RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11017
(142 letters)
>gnl|CDD|202804 pfam03909, BSD, BSD domain. This domain contains a distinctive
-FW- motif. It is found in a family of eukaryotic
transcription factors as well as a set of proteins of
unknown function.
Length = 60
Score = 52.6 bits (127), Expect = 2e-10
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 44 PPGVDYEFDYTTQYPVAMVTLAQDKKLEHMRFELVPATLNETTFWRNYFYRVSLITQ 100
D EFD + L +D +L + ELVP L+E FW+ YFY + I
Sbjct: 1 FSLWDNEFDADEKKEEIQALLKEDPELRKLYNELVPKKLSEEEFWKRYFYLLLFIKL 57
>gnl|CDD|128990 smart00751, BSD, domain in transcription factors and
synapse-associated proteins.
Length = 51
Score = 46.4 bits (111), Expect = 4e-08
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 50 EFDYTTQYPVAMVTLAQDKKLEHMRFELVPATLNETTFWRNYFYRVSLI 98
F + L ++ L+ + ELVP L+E FW YFY + I
Sbjct: 2 SFSLDAKKEEIESLLKENPLLKKLYNELVPKVLSEEEFWARYFYLLYKI 50
>gnl|CDD|178335 PLN02734, PLN02734, glycyl-tRNA synthetase.
Length = 684
Score = 28.2 bits (63), Expect = 1.5
Identities = 8/17 (47%), Positives = 14/17 (82%)
Query: 24 MVTLEQDKKLEHKKNFT 40
MV++ ++KK EH++ FT
Sbjct: 512 MVSISKEKKKEHQRVFT 528
>gnl|CDD|178768 PLN03229, PLN03229, acetyl-coenzyme A carboxylase carboxyl
transferase subunit alpha; Provisional.
Length = 762
Score = 27.9 bits (62), Expect = 2.2
Identities = 14/88 (15%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 27 LEQDKK--LEHKKNFTRNPPPGVD-----YEFDYTTQYPVAMVTLAQDKKLEHMRFELVP 79
+E+ K+ L+ K++ ++ ++ + + +Y A++ + ++LE++R E
Sbjct: 438 VEKLKEQILKAKESSSKPSELALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSK 497
Query: 80 ATLNETTFWRNYFYRVSLITQYFDTSLS 107
A + ++ + F+ LS
Sbjct: 498 ANSQDQLMHPVLMEKIEKLKDEFNKRLS 525
>gnl|CDD|240367 PTZ00338, PTZ00338, dimethyladenosine transferase-like protein;
Provisional.
Length = 294
Score = 27.3 bits (61), Expect = 3.3
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 22/52 (42%)
Query: 2 NSRNPPPGVDYEFDYTTQYPVAMVTLEQDKKLEHKKNFTRNPPPGVDY-EFD 52
NS NPPP V+ + V ++E K NPPP VD+ E+D
Sbjct: 174 NSFNPPPKVE-----------SSVV-----RIEPK-----NPPPDVDFEEWD 204
>gnl|CDD|107286 cd06291, PBP1_Qymf_like, Ligand binding domain of the lacI-like
transcription regulator from a novel metal-reducing
bacterium Alkaliphilus Metalliredigens (strain Qymf) and
its close homologs. This group includes the ligand
binding domain of the lacI-like transcription regulator
from a novel metal-reducing bacterium Alkaliphilus
Metalliredigens (strain Qymf) and its close homologs.
Qymf is a strict anaerobe that could be grown in the
presence of borax and its cells are straight rods that
produce endospores. This group is a member of the
LacI-GalR family repressors that are composed of two
functional domains: an N-terminal HTH (helix-turn-helix)
domain, which is responsible for the DNA-binding
specificity, and a C-terminal ligand-binding domain,
which is homologous to the sugar-binding domain of
ABC-type transport systems that contain the type I
periplasmic binding protein-like fold. As also observed
in the periplasmic binding proteins, the C-terminal
domain of the bacterial transcription repressor
undergoes a conformational change upon ligand binding
which in turn changes the DNA binding affinity of the
repressor.
Length = 265
Score = 26.8 bits (60), Expect = 3.7
Identities = 6/21 (28%), Positives = 15/21 (71%)
Query: 96 SLITQYFDTSLSSIQQPVPEL 116
+ +T+ + L++I+QP+ E+
Sbjct: 211 TKLTRLYTPELTTIRQPIEEI 231
>gnl|CDD|181392 PRK08332, PRK08332, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 1740
Score = 26.7 bits (58), Expect = 6.4
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 88 WRNYFYRVSLITQYFDTSLSSIQQPVPELWPIQFLTPALVVGL 130
W Y Y + + +Y D ++ + P+PE+ LT + VG+
Sbjct: 1331 WDEYAYVIQKVAKYLDNAIDVNKFPLPEIDYNTKLTRRIGVGM 1373
>gnl|CDD|191352 pfam05716, AKAP_110, A-kinase anchor protein 110 kDa (AKAP 110).
This family consists of several mammalian protein kinase
A anchoring protein 3 (PRKA3) or A-kinase anchor protein
110 kDa (AKAP 110) sequences. Agents that increase
intracellular cAMP are potent stimulators of sperm
motility. Anchoring inhibitor peptides, designed to
disrupt the interaction of the cAMP-dependent protein
kinase A (PKA) with A kinase-anchoring proteins (AKAPs),
are potent inhibitors of sperm motility. PKA anchoring
is a key biochemical mechanism controlling motility.
AKAP110 shares compartments with both RI and RII
isoforms of PKA and may function as a regulator of both
motility- and head-associated functions such as
capacitation and the acrosome reaction.
Length = 685
Score = 26.2 bits (57), Expect = 7.6
Identities = 16/50 (32%), Positives = 21/50 (42%)
Query: 38 NFTRNPPPGVDYEFDYTTQYPVAMVTLAQDKKLEHMRFELVPATLNETTF 87
NF P P V E + V A+ K L + F L+ L+ET F
Sbjct: 389 NFAPGPSPVVKDEQHLDSPPIVGDQEQAEKKDLSSVVFNLIRNLLSETIF 438
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.411
Gapped
Lambda K H
0.267 0.0794 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,282,189
Number of extensions: 621259
Number of successful extensions: 459
Number of sequences better than 10.0: 1
Number of HSP's gapped: 457
Number of HSP's successfully gapped: 11
Length of query: 142
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 55
Effective length of database: 7,078,804
Effective search space: 389334220
Effective search space used: 389334220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.5 bits)