RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy11017
         (142 letters)



>1x3a_A Synapse associated protein 1; BSD domain, homolog of the drosophila
           SAP47, structural genomics, NPPSFA; NMR {Homo sapiens}
           SCOP: a.240.1.1
          Length = 100

 Score = 86.2 bits (213), Expect = 3e-23
 Identities = 38/65 (58%), Positives = 46/65 (70%)

Query: 36  KKNFTRNPPPGVDYEFDYTTQYPVAMVTLAQDKKLEHMRFELVPATLNETTFWRNYFYRV 95
           K+NF R+PP GV + FD+   YPVA+V L +D+ L  MRF LVP  + E  FWRNYFYRV
Sbjct: 25  KRNFLRDPPAGVQFNFDFDQMYPVALVMLQEDELLSKMRFALVPKLVKEEVFWRNYFYRV 84

Query: 96  SLITQ 100
           SLI Q
Sbjct: 85  SLIKQ 89


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 27.5 bits (60), Expect = 1.7
 Identities = 23/166 (13%), Positives = 52/166 (31%), Gaps = 50/166 (30%)

Query: 4   RNPPPGV----DYEFDYTTQYPVAMVTLEQDKKLEHKK-----NFTRN------PPPGVD 48
           + P            +   +       LE +  L H+      N  +        PP +D
Sbjct: 419 KQPKESTISIPSIYLELKVK-------LENEYAL-HRSIVDHYNIPKTFDSDDLIPPYLD 470

Query: 49  -YEFDYTTQYPVA--MVTLAQDKKLEHMR-----FELVPATL-NETTFWRNYFYRVSLIT 99
            Y + +     +   +  +   +++   R     F  +   + +++T W      ++ + 
Sbjct: 471 QYFYSH-----IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525

Query: 100 Q------YFDTSLSSIQQPVPELWPIQFLTPALVVGLSSNLYQSTY 139
           Q      Y   +    ++ V  +  + FL       +  NL  S Y
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAI--LDFL-----PKIEENLICSKY 564


>3kkc_A TETR family transcriptional regulator; APC20805, structural
           genomics, PSI-2, protein structure initiative; 2.50A
           {Streptococcus agalactiae 2603V}
          Length = 177

 Score = 25.9 bits (57), Expect = 4.1
 Identities = 10/69 (14%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 60  AMVTLAQDKKLEHMRF-ELV-PATLNETTFWRNYFYRVSLITQYFDTSLSSIQQPVPELW 117
           A ++L Q+     +   +++  A +  +TF+ +Y  +  L+ +  +     + +   ++ 
Sbjct: 20  AFISLLQENDYSKITVQDVIGLANVGRSTFYSHYESKEVLLKELCEDLFHHLFKQGRDVT 79

Query: 118 PIQFLTPAL 126
             ++L   L
Sbjct: 80  FEEYLVHIL 88


>2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine
           methyltransferase; structural genomics, target 6426D,
           PSI; 1.90A {Streptococcus mutans} PDB: 3l7s_A 3l7r_A
           3t0c_A
          Length = 755

 Score = 25.2 bits (55), Expect = 9.6
 Identities = 24/106 (22%), Positives = 35/106 (33%), Gaps = 10/106 (9%)

Query: 43  PPPGVDYEFDYTTQYPVAMVTLAQDKKLEHMRFELV-PATLNETTFWRNYFYRVSLITQY 101
            PP +  +  +     V     AQ      ++  L  P T+   +F R    R  L  Q 
Sbjct: 509 KPPIIYGDVQHLEPITVEETVYAQSLTDRPVKGMLTGPITITNWSFERTDIPRDQLFNQI 568

Query: 102 FDTSLSSIQQPVPEL-----WPIQFLTPALVVGLSSNLYQSTYYLD 142
                 +I+  +  L       IQ    AL  GL     +   YLD
Sbjct: 569 ----GLAIKDEIKLLENAGIAIIQVDEAALREGLPLRKSKQKAYLD 610


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.318    0.135    0.411 

Gapped
Lambda     K      H
   0.267   0.0643    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,178,009
Number of extensions: 111683
Number of successful extensions: 175
Number of sequences better than 10.0: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 8
Length of query: 142
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 58
Effective length of database: 4,356,429
Effective search space: 252672882
Effective search space used: 252672882
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.0 bits)