RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11017
         (142 letters)



>d1x3aa1 a.240.1.1 (A:8-94) Synapse associated protein 1, SYAP1
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 87

 Score = 81.0 bits (200), Expect = 7e-22
 Identities = 38/65 (58%), Positives = 46/65 (70%)

Query: 36  KKNFTRNPPPGVDYEFDYTTQYPVAMVTLAQDKKLEHMRFELVPATLNETTFWRNYFYRV 95
           K+NF R+PP GV + FD+   YPVA+V L +D+ L  MRF LVP  + E  FWRNYFYRV
Sbjct: 18  KRNFLRDPPAGVQFNFDFDQMYPVALVMLQEDELLSKMRFALVPKLVKEEVFWRNYFYRV 77

Query: 96  SLITQ 100
           SLI Q
Sbjct: 78  SLIKQ 82


>d2evea1 b.122.1.8 (A:2-149) Hypothetical protein PSPTO5229
           {Pseudomonas syringae [TaxId: 317]}
          Length = 148

 Score = 24.9 bits (54), Expect = 3.7
 Identities = 9/38 (23%), Positives = 16/38 (42%)

Query: 36  KKNFTRNPPPGVDYEFDYTTQYPVAMVTLAQDKKLEHM 73
           K    +NP   +D  F    +  + +  L Q  +LE +
Sbjct: 85  KATTEKNPWSALDIGFVDIFKNVLGLGYLKQQSQLEQL 122


>d1ysja2 d.58.19.1 (A:178-292) Protein YxeP {Bacillus subtilis
           [TaxId: 1423]}
          Length = 115

 Score = 23.7 bits (50), Expect = 6.9
 Identities = 4/13 (30%), Positives = 5/13 (38%)

Query: 9   GVDYEFDYTTQYP 21
           G   EF +    P
Sbjct: 103 GAQAEFKWFPYLP 115



 Score = 23.7 bits (50), Expect = 6.9
 Identities = 4/13 (30%), Positives = 5/13 (38%)

Query: 46  GVDYEFDYTTQYP 58
           G   EF +    P
Sbjct: 103 GAQAEFKWFPYLP 115


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.135    0.411 

Gapped
Lambda     K      H
   0.267   0.0476    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 543,438
Number of extensions: 22842
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 8
Length of query: 142
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 65
Effective length of database: 1,350,386
Effective search space: 87775090
Effective search space used: 87775090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.9 bits)