BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11018
(121 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q58DK1|CPT1B_BOVIN Carnitine O-palmitoyltransferase 1, muscle isoform OS=Bos taurus
GN=CPT1B PE=2 SV=1
Length = 771
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 32/47 (68%)
Query: 1 MAEAHSAVAFSFRITHEGWDVNFDREVLHLVWNSGVRSWKKRLARFK 47
MAEAH AVAF F +T EG D REVL ++ S +RSWKKRL R K
Sbjct: 1 MAEAHQAVAFQFTVTPEGVDFQLSREVLKHIYLSVIRSWKKRLIRIK 47
>sp|Q92523|CPT1B_HUMAN Carnitine O-palmitoyltransferase 1, muscle isoform OS=Homo
sapiens GN=CPT1B PE=2 SV=2
Length = 772
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/47 (57%), Positives = 31/47 (65%)
Query: 1 MAEAHSAVAFSFRITHEGWDVNFDREVLHLVWNSGVRSWKKRLARFK 47
MAEAH AVAF F +T +G D RE L V+ SG+ SWKKRL R K
Sbjct: 1 MAEAHQAVAFQFTVTPDGVDFRLSREALKHVYLSGINSWKKRLIRIK 47
>sp|Q8HY46|CPT1B_PIG Carnitine O-palmitoyltransferase 1, muscle isoform OS=Sus scrofa
GN=CPT1B PE=2 SV=1
Length = 772
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 31/47 (65%)
Query: 1 MAEAHSAVAFSFRITHEGWDVNFDREVLHLVWNSGVRSWKKRLARFK 47
MAEAH AVAF F +T EG D RE L ++ SG+ SWKKRL R K
Sbjct: 1 MAEAHQAVAFQFTVTPEGVDFRLSREALKHIYLSGINSWKKRLIRIK 47
>sp|Q63704|CPT1B_RAT Carnitine O-palmitoyltransferase 1, muscle isoform OS=Rattus
norvegicus GN=Cpt1b PE=1 SV=1
Length = 772
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 31/47 (65%)
Query: 1 MAEAHSAVAFSFRITHEGWDVNFDREVLHLVWNSGVRSWKKRLARFK 47
MAEAH AVAF F +T +G D RE L ++ SG+ SWKKRL R K
Sbjct: 1 MAEAHQAVAFQFTVTPDGVDFRLSREALRHIYLSGINSWKKRLIRIK 47
>sp|Q924X2|CPT1B_MOUSE Carnitine O-palmitoyltransferase 1, muscle isoform OS=Mus
musculus GN=Cpt1b PE=2 SV=1
Length = 772
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 31/47 (65%)
Query: 1 MAEAHSAVAFSFRITHEGWDVNFDREVLHLVWNSGVRSWKKRLARFK 47
MAEAH AVAF F +T +G D RE L ++ SG+ SWKKRL R K
Sbjct: 1 MAEAHQAVAFQFTVTPDGVDFRLSREALRHIYLSGINSWKKRLIRIK 47
>sp|P50416|CPT1A_HUMAN Carnitine O-palmitoyltransferase 1, liver isoform OS=Homo sapiens
GN=CPT1A PE=1 SV=2
Length = 773
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 31/47 (65%)
Query: 1 MAEAHSAVAFSFRITHEGWDVNFDREVLHLVWNSGVRSWKKRLARFK 47
MAEAH AVAF F +T +G D+ E L ++ SG+ SWKK+ RFK
Sbjct: 1 MAEAHQAVAFQFTVTPDGIDLRLSHEALRQIYLSGLHSWKKKFIRFK 47
>sp|P97742|CPT1A_MOUSE Carnitine O-palmitoyltransferase 1, liver isoform OS=Mus musculus
GN=Cpt1a PE=1 SV=4
Length = 773
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 30/47 (63%)
Query: 1 MAEAHSAVAFSFRITHEGWDVNFDREVLHLVWNSGVRSWKKRLARFK 47
MAEAH AVAF F +T +G D+ E L + SG+ SWKK+ RFK
Sbjct: 1 MAEAHQAVAFQFTVTPDGIDLRLSHEALKQICLSGLHSWKKKFIRFK 47
>sp|P32198|CPT1A_RAT Carnitine O-palmitoyltransferase 1, liver isoform OS=Rattus
norvegicus GN=Cpt1a PE=1 SV=2
Length = 773
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 30/47 (63%)
Query: 1 MAEAHSAVAFSFRITHEGWDVNFDREVLHLVWNSGVRSWKKRLARFK 47
MAEAH AVAF F +T +G D+ E L + SG+ SWKK+ RFK
Sbjct: 1 MAEAHQAVAFQFTVTPDGIDLRLSHEALKQICLSGLHSWKKKFIRFK 47
>sp|Q68Y62|CPT1A_HORSE Carnitine O-palmitoyltransferase 1, liver isoform OS=Equus
caballus GN=CPT1A PE=2 SV=1
Length = 776
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 30/47 (63%)
Query: 1 MAEAHSAVAFSFRITHEGWDVNFDREVLHLVWNSGVRSWKKRLARFK 47
MAEAH AVAF F +T +G D+ E L + SG+ SWKK+ RFK
Sbjct: 1 MAEAHQAVAFQFTVTPDGIDLRLSHEALKQICLSGLHSWKKKFIRFK 47
>sp|Q8TCG5|CPT1C_HUMAN Carnitine O-palmitoyltransferase 1, brain isoform OS=Homo sapiens
GN=CPT1C PE=2 SV=1
Length = 803
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 1 MAEAHSAVAFSFRITHEGWDVNFDREVLHLVWNSGVRSWKKRLARFKRLKYRTGNFSA 58
MAEAH AV F +T +G +V VL ++ SG+RSWK+ L+RF + TG F A
Sbjct: 1 MAEAHQAVGFRPSLTSDGAEVELSAPVLQEIYLSGLRSWKRHLSRFWN-DFLTGVFPA 57
>sp|F1LN46|CPT1C_RAT Carnitine O-palmitoyltransferase 1, brain isoform OS=Rattus
norvegicus GN=Cpt1c PE=1 SV=1
Length = 801
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 1 MAEAHSAVAFSFRITHEGWDVNFDREVLHLVWNSGVRSWKKRLAR 45
MAEAH A + ++ +G +V V ++ S +RSWK+ L R
Sbjct: 1 MAEAHQASSLLSSLSSDGAEVELSSSVWQEIYLSALRSWKRNLWR 45
>sp|Q8BGD5|CPT1C_MOUSE Carnitine O-palmitoyltransferase 1, brain isoform OS=Mus musculus
GN=Cpt1c PE=1 SV=1
Length = 798
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 1 MAEAHSAVAFSFRITHEGWDVNFDREVLHLVWNSGVRSWKKRLAR 45
MAEAH A + ++ +G +V V ++ +RSWK+ L R
Sbjct: 1 MAEAHQASSLLSSLSSDGAEVELSSPVWQEIYLCALRSWKRHLWR 45
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.139 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,667,390
Number of Sequences: 539616
Number of extensions: 1737557
Number of successful extensions: 3773
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3761
Number of HSP's gapped (non-prelim): 12
length of query: 121
length of database: 191,569,459
effective HSP length: 88
effective length of query: 33
effective length of database: 144,083,251
effective search space: 4754747283
effective search space used: 4754747283
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)