Query psy11018
Match_columns 121
No_of_seqs 64 out of 66
Neff 3.3
Searched_HMMs 46136
Date Fri Aug 16 16:04:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11018.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11018hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3716|consensus 99.9 2.2E-25 4.8E-30 201.1 -2.0 101 1-107 1-114 (764)
2 PF10305 Fmp27_SW: RNA pol II 52.8 13 0.00027 26.5 2.3 23 26-48 1-23 (103)
3 PF07369 DUF1488: Protein of u 41.7 66 0.0014 21.2 4.3 30 3-32 12-41 (83)
4 COG0226 PstS ABC-type phosphat 24.9 52 0.0011 27.1 1.9 50 9-59 125-175 (318)
5 COG5474 Uncharacterized conser 22.2 74 0.0016 25.2 2.2 30 19-48 3-32 (159)
6 PF09654 DUF2396: Protein of u 21.8 59 0.0013 25.8 1.6 24 16-40 65-88 (161)
7 TIGR02652 conserved hypothetic 21.7 60 0.0013 25.9 1.6 24 16-40 68-91 (163)
8 PF12849 PBP_like_2: PBP super 20.4 80 0.0017 24.2 2.1 46 13-61 102-149 (281)
9 PF08924 DUF1906: Domain of un 19.6 82 0.0018 23.2 1.9 29 25-56 107-135 (136)
10 TIGR01352 tonB_Cterm TonB fami 19.5 1.5E+02 0.0034 18.0 2.9 33 8-40 12-50 (74)
No 1
>KOG3716|consensus
Probab=99.89 E-value=2.2e-25 Score=201.07 Aligned_cols=101 Identities=35% Similarity=0.423 Sum_probs=92.7
Q ss_pred CccccccceeeeeeeCCceeeeeCHHHHHHHHHHhhHhHHHhHhhhhccccccceeccc-chhhhhHHhhhhhcccccCc
Q psy11018 1 MAEAHSAVAFSFRITHEGWDVNFDREVLHLVWNSGVRSWKKRLARFKRLKYRTGNFSAY-FSLGPVLKRVFGTEFFPSAI 79 (121)
Q Consensus 1 MAEAHqAVaFqFtvT~dGidv~~s~EaL~~I~~SgvRSWKKRl~RFkN~~iltGVyPAs-~SwlfVv~ai~~~~~~~~d~ 79 (121)
||||||||||||+|||+|.|++.++|+++.+|++|++|||||+.|++| ++.|||||++ .||++++++|++++|.+.||
T Consensus 1 maeah~av~f~~~vt~~~~~~~~~~~~~~~~~ls~~~sw~~~~~r~~N-~~~~~v~P~~P~s~l~~~~~i~~~~~~~~d~ 79 (764)
T KOG3716|consen 1 MAEAHQAVAFQFTVTPMGPDLNKSLEALPYPYLSGFPSWKERLYRTYN-GIENGVWPASPISFLALTFAIIGTSFLKYDP 79 (764)
T ss_pred CcccccceeeeeeeccCchhhhhccccccccccccCchHHHHHHHHHH-HHHhccCCCCchhHHHHHHHHHHHHHhcCCc
Confidence 999999999999999999999999999999999999999999999999 9999999999 99999999999999999999
Q ss_pred cCCCCCCcceeccce------------eeccCceEEeeec
Q psy11018 80 VVPPVTQPFHCVQIR------------LFTTGDTITTVPL 107 (121)
Q Consensus 80 s~~~~~~i~~~~~~~------------l~tt~~~~~~~~~ 107 (121)
|+|+ .+||.. |+.+|.|.+.|-+
T Consensus 80 ~lgl-----~~Lp~~~~~~~~~l~s~~i~~~~~w~~vi~~ 114 (764)
T KOG3716|consen 80 SLGL-----RLLPKFQSEQARLLKSLAIFATGLWLTVIFL 114 (764)
T ss_pred cccc-----ccccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 556655 5566777665543
No 2
>PF10305 Fmp27_SW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019415 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a conserved region within FMP27 that contains characteristic SW and GKG sequence motifs.
Probab=52.77 E-value=13 Score=26.51 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=17.4
Q ss_pred HHHHHHHHHhhHhHHHhHhhhhc
Q psy11018 26 EVLHLVWNSGVRSWKKRLARFKR 48 (121)
Q Consensus 26 EaL~~I~~SgvRSWKKRl~RFkN 48 (121)
||.+.+..-.-+||+||+.+++.
T Consensus 1 eA~~rL~~~~S~SWi~ri~~~k~ 23 (103)
T PF10305_consen 1 EARERLQENNSTSWIRRIRKAKR 23 (103)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666777999999988854
No 3
>PF07369 DUF1488: Protein of unknown function (DUF1488); InterPro: IPR009962 This family consists of several hypothetical bacterial proteins of around 85 residues in length. The function of this family is unknown.; PDB: 2GPI_A.
Probab=41.71 E-value=66 Score=21.23 Aligned_cols=30 Identities=23% Similarity=0.283 Sum_probs=19.7
Q ss_pred cccccceeeeeeeCCceeeeeCHHHHHHHH
Q psy11018 3 EAHSAVAFSFRITHEGWDVNFDREVLHLVW 32 (121)
Q Consensus 3 EAHqAVaFqFtvT~dGidv~~s~EaL~~I~ 32 (121)
+++++|.|.-.+.-.-+...++.++|...+
T Consensus 12 ~~~~~V~F~a~~~g~~i~C~Is~~aL~~~~ 41 (83)
T PF07369_consen 12 EARQAVRFPAQVDGMQIRCAISAEALEDLF 41 (83)
T ss_dssp TTTTEEEEEEEETTEEEEEEEEHHHHHHHH
T ss_pred cCCCEEEEEEEECCEEEEEEEeHHHHHhhh
Confidence 456777774444444445556799999988
No 4
>COG0226 PstS ABC-type phosphate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=24.86 E-value=52 Score=27.10 Aligned_cols=50 Identities=10% Similarity=0.065 Sum_probs=39.2
Q ss_pred eeeeeeeCCce-eeeeCHHHHHHHHHHhhHhHHHhHhhhhccccccceeccc
Q psy11018 9 AFSFRITHEGW-DVNFDREVLHLVWNSGVRSWKKRLARFKRLKYRTGNFSAY 59 (121)
Q Consensus 9 aFqFtvT~dGi-dv~~s~EaL~~I~~SgvRSWKKRl~RFkN~~iltGVyPAs 59 (121)
|+.+-+..++. .++++.+.|+.||...+..|+.--...-| .=++=++++.
T Consensus 125 ~i~vi~N~~~~~~~~Lt~~~l~~If~G~it~W~d~~~~~~n-~~I~vv~R~~ 175 (318)
T COG0226 125 AIVVIVNLPNPDVLNLTKDQLADIFSGKITNWNDVGGQLLN-PGITVVGRSD 175 (318)
T ss_pred eEEEEEcCCCccccccCHHHHHHHhcCCCccccccCcccCC-CCceEEecCC
Confidence 55557778888 89999999999999999999965555546 3366677774
No 5
>COG5474 Uncharacterized conserved protein [Function unknown]
Probab=22.24 E-value=74 Score=25.23 Aligned_cols=30 Identities=17% Similarity=0.119 Sum_probs=26.8
Q ss_pred eeeeeCHHHHHHHHHHhhHhHHHhHhhhhc
Q psy11018 19 WDVNFDREVLHLVWNSGVRSWKKRLARFKR 48 (121)
Q Consensus 19 idv~~s~EaL~~I~~SgvRSWKKRl~RFkN 48 (121)
|.+-++.|-+.++=+|++++|-.|+.|.|.
T Consensus 3 iti~ls~e~v~~LDLSpi~q~mer~~r~~e 32 (159)
T COG5474 3 ITIVLSKEEVEELDLSPINQMMERYFRTKE 32 (159)
T ss_pred eEEEeCHHHHhhcCccHHHHHHHHHHHhHH
Confidence 456678999999999999999999999988
No 6
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=21.78 E-value=59 Score=25.83 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=20.6
Q ss_pred CCceeeeeCHHHHHHHHHHhhHhHH
Q psy11018 16 HEGWDVNFDREVLHLVWNSGVRSWK 40 (121)
Q Consensus 16 ~dGidv~~s~EaL~~I~~SgvRSWK 40 (121)
||||-+.+ ||+|..+|--|.|.-|
T Consensus 65 pDGiRfEI-heaLDrLytqGyRAtk 88 (161)
T PF09654_consen 65 PDGIRFEI-HEALDRLYTQGYRATK 88 (161)
T ss_pred CCceeEeH-HHHHHHHHhcccceee
Confidence 49987776 8999999999998876
No 7
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=21.68 E-value=60 Score=25.85 Aligned_cols=24 Identities=21% Similarity=0.435 Sum_probs=20.6
Q ss_pred CCceeeeeCHHHHHHHHHHhhHhHH
Q psy11018 16 HEGWDVNFDREVLHLVWNSGVRSWK 40 (121)
Q Consensus 16 ~dGidv~~s~EaL~~I~~SgvRSWK 40 (121)
||||-+.+ ||+|..+|--|.|.-|
T Consensus 68 pDGiRfEI-heaLDrLytqG~RAtk 91 (163)
T TIGR02652 68 PDGIRFEI-HEALDRLFTQGYRATR 91 (163)
T ss_pred CCceeEeH-HHHHHHHHhcccceee
Confidence 39987776 8999999999998876
No 8
>PF12849 PBP_like_2: PBP superfamily domain; InterPro: IPR024370 This entry represents members of the periplasmic binding domain superfamily []. It is often associated with a helix-turn-helix domain.; PDB: 1QUL_A 1OIB_A 1A54_A 1IXH_A 1A40_A 1QUJ_A 1A55_A 1IXI_A 2ABH_A 1QUK_A ....
Probab=20.36 E-value=80 Score=24.22 Aligned_cols=46 Identities=13% Similarity=0.159 Sum_probs=29.9
Q ss_pred eeeC-CceeeeeCHHHHHHHHHHhhHhHHHhHhhhhccccccceeccc-ch
Q psy11018 13 RITH-EGWDVNFDREVLHLVWNSGVRSWKKRLARFKRLKYRTGNFSAY-FS 61 (121)
Q Consensus 13 tvT~-dGidv~~s~EaL~~I~~SgvRSWKKRl~RFkN~~iltGVyPAs-~S 61 (121)
-+.. .++. +++.+.|+.||..-++.|+. +....| .-++=+.+.. ++
T Consensus 102 v~n~~np~~-~Lt~~ql~~I~~G~It~W~~-~~~~~~-~~I~~~~r~~~Sg 149 (281)
T PF12849_consen 102 VVNKDNPLN-NLTREQLRDIFSGEITNWSD-LGGGPD-RPIKVVGRSDGSG 149 (281)
T ss_dssp EEETTTTTE-EETHHHHHHHHCTS--BGGG-TTTCHS-SB-EEEEESSTSH
T ss_pred EEcCCCccc-cccHHHHHHHHhhhhhcccc-cccCCC-CceEEEeCCCCCc
Confidence 3334 4455 79999999999999999997 334445 5566666766 44
No 9
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=19.63 E-value=82 Score=23.20 Aligned_cols=29 Identities=21% Similarity=0.354 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhhHhHHHhHhhhhcccccccee
Q psy11018 25 REVLHLVWNSGVRSWKKRLARFKRLKYRTGNF 56 (121)
Q Consensus 25 ~EaL~~I~~SgvRSWKKRl~RFkN~~iltGVy 56 (121)
.+....--+.-+|.|...+.+ + ++..|||
T Consensus 107 ~~~~~~~i~~Y~~g~~~~l~~--~-gY~~GvY 135 (136)
T PF08924_consen 107 DAECDSAILPYFRGWNSALGA--S-GYRPGVY 135 (136)
T ss_dssp -HH-------HHHHHHHHHGG--G-T-EEEEE
T ss_pred chhhhhHHHHHHHHHHHHHhh--C-CCcceee
Confidence 344444445678999988887 5 7888988
No 10
>TIGR01352 tonB_Cterm TonB family C-terminal domain. This model represents the C-terminal of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to help span the periplasm.
Probab=19.47 E-value=1.5e+02 Score=18.03 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=22.6
Q ss_pred ceeeeeeeCCcee--eee---C-HHHHHHHHHHhhHhHH
Q psy11018 8 VAFSFRITHEGWD--VNF---D-REVLHLVWNSGVRSWK 40 (121)
Q Consensus 8 VaFqFtvT~dGid--v~~---s-~EaL~~I~~SgvRSWK 40 (121)
|-++|.+.+||-- +.+ + ++.|.+--...++.|+
T Consensus 12 v~v~~~i~~~G~v~~~~i~~ssg~~~ld~~a~~av~~~~ 50 (74)
T TIGR01352 12 VVVRFTVDADGRVTSVSVLKSSGDEALDRAALEAVRKAR 50 (74)
T ss_pred EEEEEEECCCCCEEEEEEEEcCCChhHHHHHHHHHHhCC
Confidence 6789999999943 322 2 4567766667777774
Done!