Query psy11018
Match_columns 121
No_of_seqs 64 out of 66
Neff 3.3
Searched_HMMs 29240
Date Fri Aug 16 16:04:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11018.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11018hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2le3_A Carnitine O-palmitoyltr 99.9 3E-27 1E-31 148.0 3.4 42 1-42 1-42 (42)
2 1qzm_A ATP-dependent protease 40.7 16 0.00053 25.1 2.2 27 20-46 30-61 (94)
3 2v4x_A JSRV capsid, capsid pro 36.2 13 0.00046 27.5 1.4 21 21-41 109-129 (140)
4 2kgf_A Capsid protein P27; ret 34.7 13 0.00043 27.6 1.0 21 21-41 114-134 (140)
5 4ard_A Capsid protein P27; vir 29.7 25 0.00086 25.3 1.9 22 20-41 95-116 (116)
6 3f08_A Uncharacterized protein 23.4 46 0.0016 22.8 2.2 36 12-47 105-140 (146)
7 2l5r_A Antimicrobial peptide a 23.1 71 0.0024 17.6 2.5 17 28-44 2-18 (26)
8 1p7n_A GAG polyprotein capsid 22.3 55 0.0019 25.1 2.6 21 24-45 154-174 (176)
9 4f7g_A Talin-1; alpha-helix bu 19.8 52 0.0018 24.0 2.0 52 44-96 34-88 (222)
10 2xb0_X Chromo domain-containin 18.9 40 0.0014 26.9 1.3 31 25-88 177-207 (270)
No 1
>2le3_A Carnitine O-palmitoyltransferase 1, liver isoform; membrane protein, amphiphilic structure, membrane-protein interaction, structural switch; NMR {Homo sapiens}
Probab=99.93 E-value=3e-27 Score=147.97 Aligned_cols=42 Identities=50% Similarity=0.877 Sum_probs=41.4
Q ss_pred CccccccceeeeeeeCCceeeeeCHHHHHHHHHHhhHhHHHh
Q psy11018 1 MAEAHSAVAFSFRITHEGWDVNFDREVLHLVWNSGVRSWKKR 42 (121)
Q Consensus 1 MAEAHqAVaFqFtvT~dGidv~~s~EaL~~I~~SgvRSWKKR 42 (121)
||||||||||||+|||||+|++||+|+|++||+||+||||||
T Consensus 1 MAEAhqAVaf~ftvt~eG~~~~~~~e~l~~i~~s~~rSwkkr 42 (42)
T 2le3_A 1 MAEAHQAVAFQFTVTPDGIDLRLSHEALRQIYLSGLHSWKKK 42 (42)
T ss_dssp CCCHHHHCSEEEEEETTEEEEEECHHHHHHHHHHHHHHHSCC
T ss_pred CchhhhhheeeeeecCCCccccccHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999986
No 2
>1qzm_A ATP-dependent protease LA; oligomerization domain, AAA+ protein, hydrolase; 1.90A {Escherichia coli} SCOP: c.37.1.20
Probab=40.73 E-value=16 Score=25.05 Aligned_cols=27 Identities=15% Similarity=0.453 Sum_probs=23.9
Q ss_pred eeeeCHHHHHHHH-----HHhhHhHHHhHhhh
Q psy11018 20 DVNFDREVLHLVW-----NSGVRSWKKRLARF 46 (121)
Q Consensus 20 dv~~s~EaL~~I~-----~SgvRSWKKRl~RF 46 (121)
++.++.++|+.|- -+|+|+..|.+...
T Consensus 30 ~~~i~d~al~~iI~~YTREaGVRnLer~i~~i 61 (94)
T 1qzm_A 30 ELTVDDSAIIGIIRYYTREAGVRGLEREISKL 61 (94)
T ss_dssp TEEECHHHHHHHHHHHCCCSSSHHHHHHHHHH
T ss_pred hceECHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 5889999999997 68999999988876
No 3
>2v4x_A JSRV capsid, capsid protein P27; virion, zinc-finger, metal-binding, CAPS protein, structural protein, viral nucleoprotein; HET: MSE; 1.5A {Jaagsiekte sheep retrovirus}
Probab=36.19 E-value=13 Score=27.49 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=19.3
Q ss_pred eeeCHHHHHHHHHHhhHhHHH
Q psy11018 21 VNFDREVLHLVWNSGVRSWKK 41 (121)
Q Consensus 21 v~~s~EaL~~I~~SgvRSWKK 41 (121)
.+++..+|.+|-.+++|+|||
T Consensus 109 ~~~~~~~l~qi~~~Al~AWr~ 129 (140)
T 2v4x_A 109 LNFLPGAYAQISNAARQAWKR 129 (140)
T ss_dssp SSSCTTHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHHHHh
Confidence 478999999999999999995
No 4
>2kgf_A Capsid protein P27; retrovirus capsid protein, N-terminal core domain (SCOP), viral protein; NMR {Mason-pfizer monkey virus}
Probab=34.75 E-value=13 Score=27.60 Aligned_cols=21 Identities=14% Similarity=0.594 Sum_probs=19.1
Q ss_pred eeeCHHHHHHHHHHhhHhHHH
Q psy11018 21 VNFDREVLHLVWNSGVRSWKK 41 (121)
Q Consensus 21 v~~s~EaL~~I~~SgvRSWKK 41 (121)
.+++..+|.+|-.+++|+|||
T Consensus 114 ~~~~~~~l~qi~~~Al~AWr~ 134 (140)
T 2kgf_A 114 MQYDPGLFAQIQAAATKAWRK 134 (140)
T ss_dssp HHCCHHHHHHHHHHHHHHTTC
T ss_pred hcCCHHHHHHHHHHHHHHHHh
Confidence 378899999999999999995
No 5
>4ard_A Capsid protein P27; viral protein, retrovirus, GAG; 7.00A {Mason-pfizer monkey virus}
Probab=29.71 E-value=25 Score=25.30 Aligned_cols=22 Identities=14% Similarity=0.581 Sum_probs=19.7
Q ss_pred eeeeCHHHHHHHHHHhhHhHHH
Q psy11018 20 DVNFDREVLHLVWNSGVRSWKK 41 (121)
Q Consensus 20 dv~~s~EaL~~I~~SgvRSWKK 41 (121)
..+++..++.+|-..++|.|+|
T Consensus 95 Q~~y~~~ayeQI~~~AikAW~k 116 (116)
T 4ard_A 95 QMQYDPGLFAQIQAAATKAWRK 116 (116)
T ss_pred HHcCCHHHHHHHHHHHHHHhcC
Confidence 4578899999999999999997
No 6
>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} SCOP: d.129.3.8 PDB: 3cnw_A
Probab=23.41 E-value=46 Score=22.85 Aligned_cols=36 Identities=8% Similarity=0.153 Sum_probs=23.9
Q ss_pred eeeeCCceeeeeCHHHHHHHHHHhhHhHHHhHhhhh
Q psy11018 12 FRITHEGWDVNFDREVLHLVWNSGVRSWKKRLARFK 47 (121)
Q Consensus 12 FtvT~dGidv~~s~EaL~~I~~SgvRSWKKRl~RFk 47 (121)
+...++|.+-..-.++++.+|.+|+++=||++..+.
T Consensus 105 ~~~~p~g~~~~~~~~~~~~~~~~~L~~Lk~~~e~~~ 140 (146)
T 3f08_A 105 GTFTPVAVSDEEAINLVHGIYSDGLKALQHAFLDLE 140 (146)
T ss_dssp EEEEESSSCHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 333444443322377889999999999999887653
No 7
>2l5r_A Antimicrobial peptide alyteserin-1C; alpha helix, antimicrobial protein; NMR {Alytes obstetricans}
Probab=23.14 E-value=71 Score=17.56 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=14.2
Q ss_pred HHHHHHHhhHhHHHhHh
Q psy11018 28 LHLVWNSGVRSWKKRLA 44 (121)
Q Consensus 28 L~~I~~SgvRSWKKRl~ 44 (121)
|++||..|+-|-.|-++
T Consensus 2 lkeifkaglgslvkgia 18 (26)
T 2l5r_A 2 LKEIFKAGLGSLVKGIA 18 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHH
Confidence 78999999999887554
No 8
>1p7n_A GAG polyprotein capsid protein P27; retrovirus, immature GAG, V protein; 2.60A {Rous sarcoma virus} SCOP: a.73.1.1
Probab=22.26 E-value=55 Score=25.08 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=18.1
Q ss_pred CHHHHHHHHHHhhHhHHHhHhh
Q psy11018 24 DREVLHLVWNSGVRSWKKRLAR 45 (121)
Q Consensus 24 s~EaL~~I~~SgvRSWKKRl~R 45 (121)
+..+|.+|-.+++++||| +.|
T Consensus 154 ~~~~~~qi~~~Al~Awr~-l~~ 174 (176)
T 1p7n_A 154 RPGELVAITASALQAFRE-VAR 174 (176)
T ss_dssp CHHHHHHHHHHHHHHHHH-HHH
T ss_pred ChhHHHHHHHHHHHHHHH-hhc
Confidence 889999999999999995 443
No 9
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus}
Probab=19.77 E-value=52 Score=23.96 Aligned_cols=52 Identities=8% Similarity=-0.005 Sum_probs=32.5
Q ss_pred hhhhccccccceecccchhhhhHHhhhh-hcccccCccCCC--CCCcceeccceee
Q psy11018 44 ARFKRLKYRTGNFSAYFSLGPVLKRVFG-TEFFPSAIVVPP--VTQPFHCVQIRLF 96 (121)
Q Consensus 44 ~RFkN~~iltGVyPAs~SwlfVv~ai~~-~~~~~~d~s~~~--~~~i~~~~~~~l~ 96 (121)
.+.|+ ++++|-||.+..-.+.+++.+. +.+-..|+.... ...+.+++|.++-
T Consensus 34 lQ~~~-dil~G~~~~~~e~a~~LAal~~Qae~Gd~~~~~~~~~~~~l~~~lP~~~~ 88 (222)
T 4f7g_A 34 VQARD-DILNGSHPVSFDKACEFAGFQCQIQFGPHNEQKHKAGFLDLKDFLPKEYV 88 (222)
T ss_dssp HHHHH-HHHTTSSCCCHHHHHHHHHHHHHHHHCSCCTTTSCSSCSCGGGTSCGGGG
T ss_pred HHHHH-HHhCCcccCCHHHHHHHHHHHHHHHHCCCCchhcccCccchhhccCHHHH
Confidence 45577 9999999999334455555554 566665654321 1356678887753
No 10
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=18.92 E-value=40 Score=26.94 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhHhHHHhHhhhhccccccceecccchhhhhHHhhhhhcccccCccCCCCCCcc
Q psy11018 25 REVLHLVWNSGVRSWKKRLARFKRLKYRTGNFSAYFSLGPVLKRVFGTEFFPSAIVVPPVTQPF 88 (121)
Q Consensus 25 ~EaL~~I~~SgvRSWKKRl~RFkN~~iltGVyPAs~SwlfVv~ai~~~~~~~~d~s~~~~~~i~ 88 (121)
.-.|.-||.-|.=+|-. ++.||++++.++|+
T Consensus 177 ~~LLvGIykyGyG~We~---------------------------------Ir~Dp~L~L~dKi~ 207 (270)
T 2xb0_X 177 EKLLIGVFKYGYGSWTQ---------------------------------IRDDPFLGITDKIF 207 (270)
T ss_dssp HHHHHHHHHHCTTCHHH---------------------------------HHHCTTTCCGGGCC
T ss_pred HHHHHHHHHHcCCcHHH---------------------------------HhcCcccCCcceec
Confidence 55788888888888875 67899999999986
Done!