Query psy11018
Match_columns 121
No_of_seqs 64 out of 66
Neff 3.3
Searched_HMMs 13730
Date Fri Aug 16 16:04:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11018.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/11018hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qzma_ c.37.1.20 (A:) ATPase 45.5 5.6 0.00041 25.2 2.2 27 20-46 30-61 (94)
2 d1i5za1 a.4.5.4 (A:138-206) Ca 26.3 34 0.0025 19.3 3.4 37 16-52 23-59 (69)
3 d2j59m1 b.55.1.1 (M:931-1063) 23.2 2.1 0.00015 26.8 -3.0 19 33-52 21-39 (133)
4 d1tf3a3 g.37.1.1 (A:71-101) Tr 20.5 38 0.0028 18.0 2.5 27 12-48 3-29 (31)
5 d3cnwa1 d.129.3.8 (A:3-140) Un 20.1 37 0.0027 20.9 2.8 18 26-43 119-136 (138)
6 d1gg3a1 a.11.2.1 (A:82-187) Er 17.9 36 0.0026 20.8 2.3 37 44-81 17-54 (106)
7 d1mixa1 a.11.2.1 (A:195-308) T 16.0 36 0.0026 20.7 1.9 49 45-95 24-76 (114)
8 d1ef1a1 a.11.2.1 (A:88-198) Mo 14.5 40 0.0029 20.6 1.9 51 44-95 17-70 (111)
9 d1y88a1 a.60.4.3 (A:128-186) H 14.4 30 0.0022 20.7 1.1 20 21-40 6-25 (59)
10 d1v5ma_ b.55.1.1 (A:) SH2 and 14.1 4 0.00029 25.9 -3.3 15 34-48 37-51 (136)
No 1
>d1qzma_ c.37.1.20 (A:) ATPase domain of protease Lon (La) {Escherichia coli [TaxId: 562]}
Probab=45.50 E-value=5.6 Score=25.16 Aligned_cols=27 Identities=15% Similarity=0.453 Sum_probs=23.8
Q ss_pred eeeeCHHHHHHHH-----HHhhHhHHHhHhhh
Q psy11018 20 DVNFDREVLHLVW-----NSGVRSWKKRLARF 46 (121)
Q Consensus 20 dv~~s~EaL~~I~-----~SgvRSWKKRl~RF 46 (121)
++.++.++|+.|- .+|+|..+|.+...
T Consensus 30 ~i~i~~~~l~~iI~~YtrEaGVR~Ler~i~~I 61 (94)
T d1qzma_ 30 ELTVDDSAIIGIIRYYTREAGVRGLEREISKL 61 (94)
T ss_dssp TEEECHHHHHHHHHHHCCCSSSHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 5889999999997 58999999998876
No 2
>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=26.34 E-value=34 Score=19.34 Aligned_cols=37 Identities=8% Similarity=0.153 Sum_probs=30.1
Q ss_pred CCceeeeeCHHHHHHHHHHhhHhHHHhHhhhhccccc
Q psy11018 16 HEGWDVNFDREVLHLVWNSGVRSWKKRLARFKRLKYR 52 (121)
Q Consensus 16 ~dGidv~~s~EaL~~I~~SgvRSWKKRl~RFkN~~il 52 (121)
++++.+.++++-|-...-...-+.-|-+.+|++.+++
T Consensus 23 ~~~i~l~lt~~~lA~~~G~sRetvsr~L~~l~~~glI 59 (69)
T d1i5za1 23 PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLI 59 (69)
T ss_dssp SSSCEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSE
T ss_pred CCeeecCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCE
Confidence 4668899999999998877777888888888775655
No 3
>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.25 E-value=2.1 Score=26.85 Aligned_cols=19 Identities=16% Similarity=0.438 Sum_probs=12.2
Q ss_pred HHhhHhHHHhHhhhhccccc
Q psy11018 33 NSGVRSWKKRLARFKRLKYR 52 (121)
Q Consensus 33 ~SgvRSWKKRl~RFkN~~il 52 (121)
..++|+|+||.+-+++ +.+
T Consensus 21 ~~~~k~Wkkr~fvL~~-~~L 39 (133)
T d2j59m1 21 GGSIRPWKQMYVVLRG-HSL 39 (133)
T ss_dssp -----CCEEEEEEEET-TEE
T ss_pred CCCCCCceEEEEEEeC-CEE
Confidence 3567899999999998 655
No 4
>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}
Probab=20.54 E-value=38 Score=17.99 Aligned_cols=27 Identities=30% Similarity=0.616 Sum_probs=21.9
Q ss_pred eeeeCCceeeeeCHHHHHHHHHHhhHhHHHhHhhhhc
Q psy11018 12 FRITHEGWDVNFDREVLHLVWNSGVRSWKKRLARFKR 48 (121)
Q Consensus 12 FtvT~dGidv~~s~EaL~~I~~SgvRSWKKRl~RFkN 48 (121)
|+-..||-|+.+...+ .-||++-||.|
T Consensus 3 f~cdsd~cdl~fttka----------nmkkhfnrfhn 29 (31)
T d1tf3a3 3 FTCDSDGCDLRFTTKA----------NMKKHFNRFHN 29 (31)
T ss_dssp EECSSSSCCCEESSHH----------HHHHHHHHHTT
T ss_pred ccccCCCcceEEeehH----------HHHHHHhhhcc
Confidence 6778899999998665 35889999987
No 5
>d3cnwa1 d.129.3.8 (A:3-140) Uncharacterized protein XoxI {Bacillus cereus [TaxId: 1396]}
Probab=20.11 E-value=37 Score=20.88 Aligned_cols=18 Identities=11% Similarity=0.571 Sum_probs=12.4
Q ss_pred HHHHHHHHHhhHhHHHhH
Q psy11018 26 EVLHLVWNSGVRSWKKRL 43 (121)
Q Consensus 26 EaL~~I~~SgvRSWKKRl 43 (121)
++++.+|..|++.=|+|+
T Consensus 119 ~~~~~~~~~~l~~L~~~f 136 (138)
T d3cnwa1 119 NLFHGIYSDGLKALQQAF 136 (138)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 466677777777777665
No 6
>d1gg3a1 a.11.2.1 (A:82-187) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.88 E-value=36 Score=20.76 Aligned_cols=37 Identities=11% Similarity=0.079 Sum_probs=25.9
Q ss_pred hhhhccccccceecccchhhhhHHhhhh-hcccccCccC
Q psy11018 44 ARFKRLKYRTGNFSAYFSLGPVLKRVFG-TEFFPSAIVV 81 (121)
Q Consensus 44 ~RFkN~~iltGVyPAs~SwlfVv~ai~~-~~~~~~d~s~ 81 (121)
-..|+ +|+.|-||.+..-.+.++|.++ +.+=..++..
T Consensus 17 lQlr~-~i~~G~~~~~~~~a~~Laal~~Qae~GD~~~~~ 54 (106)
T d1gg3a1 17 LQLRQ-DIVAGRLPCSFATLALLGSYTIQSELGDYDPEL 54 (106)
T ss_dssp HHHHH-HHHTTSSCCCHHHHHHHHHHHHHHHHCSCCTTS
T ss_pred HHHHH-HHHhcccCCCHHHHHHHHHHHHHHHhCCCCccc
Confidence 34567 9999999999444556666666 6666666654
No 7
>d1mixa1 a.11.2.1 (A:195-308) Talin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=16.02 E-value=36 Score=20.72 Aligned_cols=49 Identities=8% Similarity=-0.027 Sum_probs=28.9
Q ss_pred hhhccccccceeccc-chhhhhHHhhhh-hcccccCccC--CCCCCcceecccee
Q psy11018 45 RFKRLKYRTGNFSAY-FSLGPVLKRVFG-TEFFPSAIVV--PPVTQPFHCVQIRL 95 (121)
Q Consensus 45 RFkN~~iltGVyPAs-~SwlfVv~ai~~-~~~~~~d~s~--~~~~~i~~~~~~~l 95 (121)
+.|+ +|+.|-||.+ -... .++|... +.+-..+++. .-...+++++|..+
T Consensus 24 Q~k~-dil~G~~~~~~~~a~-~Laal~~Q~e~Gd~~~~~~~~~~~~~~~~lP~~~ 76 (114)
T d1mixa1 24 QARD-DILNGSHPVSFDKAC-EFAGYQCQIQFGPHNEQKHKPGFLELKDFLPKEY 76 (114)
T ss_dssp HHHH-HHHTTSSCCCHHHHH-HHHHHHHHHHHCSCCTTTSCTTCSCGGGTSCGGG
T ss_pred HHHH-HHHCCCCCCCHHHHH-HHHHHHHHHHhCCCCccccccchhhhcccCChhh
Confidence 4466 8999999999 4444 3444433 5555555543 22234556777654
No 8
>d1ef1a1 a.11.2.1 (A:88-198) Moesin {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.48 E-value=40 Score=20.64 Aligned_cols=51 Identities=8% Similarity=-0.097 Sum_probs=29.5
Q ss_pred hhhhccccccceecccchhhhhHHhhhh-hcccccCccCCCC--CCcceecccee
Q psy11018 44 ARFKRLKYRTGNFSAYFSLGPVLKRVFG-TEFFPSAIVVPPV--TQPFHCVQIRL 95 (121)
Q Consensus 44 ~RFkN~~iltGVyPAs~SwlfVv~ai~~-~~~~~~d~s~~~~--~~i~~~~~~~l 95 (121)
-..|+ +|+.|-||.+..-.+.+++.+. +.|=..|+..-.. -...+++|.+.
T Consensus 17 lQlr~-dil~G~~~~~~~~a~~Laal~~Qae~GD~~~~~~~~~~l~~~~~lP~~~ 70 (111)
T d1ef1a1 17 LQVKE-GILNDDIYCPPETAVLLASYAVQSKYGDFNKEVHKSGYLAGDKLLPQRV 70 (111)
T ss_dssp HHHHH-HHHTTSSCCCHHHHHHHHHHHHHHHHCSCCTTTSCTTTTTTCCCSCHHH
T ss_pred HHHHH-HHHCCCCCCCHHHHHHHHHHHHHHHhCCCCcccccHHHHHHHhcCchHH
Confidence 34577 9999999999434444555555 5554444433211 12346777653
No 9
>d1y88a1 a.60.4.3 (A:128-186) Hypothetical protein AF1548, C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=14.39 E-value=30 Score=20.67 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=16.1
Q ss_pred eeeCHHHHHHHHHHhhHhHH
Q psy11018 21 VNFDREVLHLVWNSGVRSWK 40 (121)
Q Consensus 21 v~~s~EaL~~I~~SgvRSWK 40 (121)
+++|+|+|.++.+.|+--++
T Consensus 6 lridkevldelvraglvfcr 25 (59)
T d1y88a1 6 LRIDKEVLDELVRAGLVFCR 25 (59)
T ss_dssp SSCCHHHHHHHHHTTCCBHH
T ss_pred eeecHHHHHHHHHhchhhhH
Confidence 57899999999998875444
No 10
>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.12 E-value=4 Score=25.91 Aligned_cols=15 Identities=27% Similarity=0.603 Sum_probs=13.2
Q ss_pred HhhHhHHHhHhhhhc
Q psy11018 34 SGVRSWKKRLARFKR 48 (121)
Q Consensus 34 SgvRSWKKRl~RFkN 48 (121)
.|.++||||.+.+++
T Consensus 37 ~~~~~WkkrwfvL~~ 51 (136)
T d1v5ma_ 37 GGTAQWQKCRLLLRR 51 (136)
T ss_dssp CCSCCCEEEEEEEEE
T ss_pred CCCCCceEEEEEEeC
Confidence 467999999999988
Done!