RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11018
         (121 letters)



>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter
          protein APS {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 136

 Score = 27.9 bits (61), Expect = 0.21
 Identities = 9/48 (18%), Positives = 13/48 (27%), Gaps = 1/48 (2%)

Query: 14 ITHEGWDVNFDREVLHLVWNSGVRSWKKRLARFKRLKYRTGNFSAYFS 61
          I  EG  + F           G   W+K     +R          +F 
Sbjct: 18 IQREGA-LRFMVADDAASGPGGTAQWQKCRLLLRRAVAGERFRLEFFV 64


>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding
           protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 107

 Score = 26.8 bits (58), Expect = 0.48
 Identities = 20/98 (20%), Positives = 31/98 (31%), Gaps = 15/98 (15%)

Query: 14  ITHEGWDVNFDREVLHLVWNSGVRSWKKRLARFKRLKYRTGNFSAYFSLGPVLKRVFGTE 73
           +   GW        LH   +SG+R WK+R                ++      + V G+ 
Sbjct: 9   VHIRGW--------LHKQDSSGLRLWKRRWFVLS-------GHCLFYYKDSREESVLGSV 53

Query: 74  FFPSAIVVPPVTQPFHCVQIRLFTTGDTITTVPLRADT 111
             PS  + P         +         + T  L ADT
Sbjct: 54  LLPSYNIRPDGPGAPRGRRFTFTAEHPGMRTYVLAADT 91


>d1jqka_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase
           {Rhodospirillum rubrum [TaxId: 1085]}
          Length = 610

 Score = 26.7 bits (59), Expect = 0.86
 Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 6/34 (17%)

Query: 75  FPSAIVV------PPVTQPFHCVQIRLFTTGDTI 102
              A+VV      P + +   C   ++ TT    
Sbjct: 301 ALEAMVVDVQCIMPSLPRIAECFHTQIITTDKHN 334


>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 150

 Score = 25.8 bits (55), Expect = 1.1
 Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 14 ITHEGWDVNFDREVLHLVWNSGVRSWKKRLARFKRLKYRTGNFSAYF 60
          IT  GW     +  ++   +  +RS+K+R     +L   + N + Y 
Sbjct: 18 ITKHGW---LYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYK 61


>d1v3ea_ b.68.1.1 (A:) Hemagglutinin-neuraminidase glycoprotein
           {Human parainfluenza virus type 3 [TaxId: 11216]}
          Length = 431

 Score = 25.9 bits (57), Expect = 1.5
 Identities = 7/39 (17%), Positives = 12/39 (30%)

Query: 64  PVLKRVFGTEFFPSAIVVPPVTQPFHCVQIRLFTTGDTI 102
           P L +       P   ++   T    C++       D I
Sbjct: 23  PSLMKTPKIRLMPGPGLLAMPTTVDGCIRTPSLVINDLI 61


>d1pgl11 b.121.4.2 (1:1-185) Comovirus coat proteins (VP37 and VP23)
           {BPMV (Bean pod mottle virus) [TaxId: 12260]}
          Length = 185

 Score = 24.5 bits (53), Expect = 4.2
 Identities = 14/90 (15%), Positives = 25/90 (27%), Gaps = 7/90 (7%)

Query: 1   MAEAHSAVAFSFRITHEGWDVNFDREVLHLVWNSGVRSWKKRLA--RFKRLKYRTGNFSA 58
            +  H       +     W++ F  EV     N+G   W    A      L +   N   
Sbjct: 99  NSTEHFDACRWTKSEPHSWELIFPIEVCGP--NNGFEMWSSEWANQTSWHLSFLVDNPKQ 156

Query: 59  YFSLGPVLKRVFGTEF-FPSAIVVPPVTQP 87
             +    +       F      ++P  + P
Sbjct: 157 STTF--DVLLGISQNFEIAGNTLMPAFSVP 184


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.139    0.451 

Gapped
Lambda     K      H
   0.267   0.0691    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 484,662
Number of extensions: 21296
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 12
Length of query: 121
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 46
Effective length of database: 1,377,846
Effective search space: 63380916
Effective search space used: 63380916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.0 bits)