BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1102
(138 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96AJ9|VTI1A_HUMAN Vesicle transport through interaction with t-SNAREs homolog 1A
OS=Homo sapiens GN=VTI1A PE=1 SV=2
Length = 217
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 39 NINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHS 98
N +E Q LLD +E +ER+ + LE GY+IA+ETE+I ++L++L RE +QR R R
Sbjct: 109 NSSENQRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARERLR 168
Query: 99 HTDFINLACGSMIC 112
TD NL S I
Sbjct: 169 ETD-ANLGKSSRIL 181
>sp|O89116|VTI1A_MOUSE Vesicle transport through interaction with t-SNAREs homolog 1A
OS=Mus musculus GN=Vti1a PE=1 SV=1
Length = 217
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 36 NSTNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRT 95
++ N +E Q LLD +E +ER+ + LE GY+IA+ETE+I ++L++L RE +QR R
Sbjct: 106 DAGNSSENQRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARD 165
Query: 96 RHSHTDFINLACGSMIC 112
R D NL S I
Sbjct: 166 RLRDAD-ANLGKSSRIL 181
>sp|Q9JI51|VTI1A_RAT Vesicle transport through interaction with t-SNAREs homolog 1A
OS=Rattus norvegicus GN=Vti1a PE=1 SV=1
Length = 224
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 34 SENSTNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRT 93
SEN E+ LLD +E +ER+ + LE GY+IA+ETE+I ++L++L RE +QR
Sbjct: 111 SENQLIKLREERAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRA 170
Query: 94 RTRHSHTDFINLACGSMIC 112
R R TD NL S I
Sbjct: 171 RERLRETD-ANLGKSSRIL 188
>sp|Q04338|VTI1_YEAST t-SNARE VTI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=VTI1 PE=1 SV=3
Length = 217
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 40/59 (67%)
Query: 36 NSTNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTR 94
N++NI+++Q Q+LL ++++G L+ RIA ETE I + ++ DL SQRETL+ R
Sbjct: 108 NASNIDDDQRQQLLSNHAILQKSGDRLKDASRIANETEGIGSQIMMDLRSQRETLENAR 166
>sp|O88384|VTI1B_MOUSE Vesicle transport through interaction with t-SNAREs homolog 1B
OS=Mus musculus GN=Vti1b PE=1 SV=1
Length = 232
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 55/86 (63%), Gaps = 4/86 (4%)
Query: 32 YFSENSTNINEEQSQR--LLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRET 89
Y EN ++N QSQR LL +E + R + +E +RIA ET++I T+++++L QR+
Sbjct: 115 YTLENE-HLNRLQSQRALLLQGTESLNRATQSIERSHRIATETDQIGTEIIEELGEQRDQ 173
Query: 90 LQRTRTRHSHTDFINLACGSMICQTV 115
L+RT++R +T+ NL+ I +++
Sbjct: 174 LERTKSRLVNTNE-NLSKSRKILRSM 198
>sp|P58200|VTI1B_RAT Vesicle transport through interaction with t-SNAREs homolog 1B
OS=Rattus norvegicus GN=Vti1b PE=1 SV=2
Length = 232
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 55/86 (63%), Gaps = 4/86 (4%)
Query: 32 YFSENSTNINEEQSQR--LLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRET 89
Y EN ++N QSQR LL +E + R + +E +RIA ET++I ++++++L QR+
Sbjct: 115 YTLENE-HLNRLQSQRALLLQGTESLNRATQSIERSHRIAAETDQIGSEIIEELGEQRDQ 173
Query: 90 LQRTRTRHSHTDFINLACGSMICQTV 115
L+RT++R +T+ NL+ I +++
Sbjct: 174 LERTKSRLVNTNE-NLSKSRKILRSM 198
>sp|Q9UEU0|VTI1B_HUMAN Vesicle transport through interaction with t-SNAREs homolog 1B
OS=Homo sapiens GN=VTI1B PE=1 SV=3
Length = 232
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 54/86 (62%), Gaps = 4/86 (4%)
Query: 32 YFSENSTNINEEQSQR--LLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRET 89
Y EN ++N QSQR LL +E + R + +E +RIA ET++I ++++++L QR+
Sbjct: 115 YAVENE-HMNRLQSQRAMLLQGTESLNRATQSIERSHRIATETDQIGSEIIEELGEQRDQ 173
Query: 90 LQRTRTRHSHTDFINLACGSMICQTV 115
L+RT++R +T NL+ I +++
Sbjct: 174 LERTKSRLVNTSE-NLSKSRKILRSM 198
>sp|Q2KIU0|VTI1B_BOVIN Vesicle transport through interaction with t-SNAREs homolog 1B
OS=Bos taurus GN=VTI1B PE=2 SV=1
Length = 232
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 54/86 (62%), Gaps = 4/86 (4%)
Query: 32 YFSENSTNINEEQSQR--LLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRET 89
Y EN ++N QSQR LL ++ + R + +E +RIA ET++I ++++++L QR+
Sbjct: 115 YAVENE-HMNRLQSQRALLLQGTDSLNRATQSIERSHRIAAETDQIGSEIIEELGEQRDQ 173
Query: 90 LQRTRTRHSHTDFINLACGSMICQTV 115
L+RT++R +T NL+ I +++
Sbjct: 174 LERTKSRLVNTSE-NLSKSRKILRSM 198
>sp|Q9SEL6|VTI11_ARATH Vesicle transport v-SNARE 11 OS=Arabidopsis thaliana GN=VTI11 PE=1
SV=2
Length = 221
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%)
Query: 43 EQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQR 92
+Q RL+ ++E + RT ++ R +ETE+I +L+DL QR++L R
Sbjct: 118 DQRARLMMSTERLGRTTDRVKDSRRTMMETEEIGVSILQDLHGQRQSLLR 167
>sp|Q9LVP9|VTI13_ARATH Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana GN=VTI13 PE=2
SV=1
Length = 221
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 31/50 (62%)
Query: 43 EQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQR 92
+Q RL+ +++ + RT ++ R +ETE++ +L+DL QR++L R
Sbjct: 118 DQRSRLMMSTDHLGRTTDRIKDSRRTILETEELGVSILQDLHGQRQSLLR 167
>sp|P78768|VTI1_SCHPO Vesicle transport v-SNARE protein vti1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=vti1 PE=2 SV=2
Length = 214
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 43 EQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQ 91
+Q RLL + +E++ + L RIA ETE I +L+DL QR L+
Sbjct: 112 DQRTRLLQGTNRLEQSSQRLLESQRIANETEGIGASILRDLHGQRNQLE 160
>sp|O94049|ACS1_CANAX Acetyl-coenzyme A synthetase 1 OS=Candida albicans GN=ACS1 PE=3
SV=1
Length = 675
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 43 EQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDF 102
+ R++ T++E +R GK IET+KI D LK+ R + RT +SH F
Sbjct: 198 DADSRIVITADESKRGGK--------TIETKKIVDDALKECPKVRNVIVFKRTGNSHVPF 249
>sp|Q9SEL5|VTI12_ARATH Vesicle transport v-SNARE 12 OS=Arabidopsis thaliana GN=VTI12 PE=1
SV=3
Length = 222
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 31/51 (60%)
Query: 40 INEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETL 90
++ +Q RL + E ++++ + R+ +ETE++ +++DL QR+TL
Sbjct: 116 VSADQRGRLAMSVERLDQSSDRIRESRRLMLETEEVGISIVQDLSQQRQTL 166
>sp|Q5T2S8|ARMC4_HUMAN Armadillo repeat-containing protein 4 OS=Homo sapiens GN=ARMC4 PE=2
SV=1
Length = 1044
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 63 ETGYRIAIETEKIATDVLKDLESQRETLQ 91
E YR AI+ E+I +++K+L S+ E LQ
Sbjct: 662 EENYRAAIKAERIIENLVKNLNSENEQLQ 690
>sp|Q16X15|MED24_AEDAE Mediator of RNA polymerase II transcription subunit 24 OS=Aedes
aegypti GN=MED24 PE=3 SV=1
Length = 1005
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 9 GFLGTELALLISWCFLLSEYHVEYFSENSTNINEEQSQRLLDTSEEIERTGKHLE 63
G L + L+ W + E+ +E FSEN + E+Q E +E+T LE
Sbjct: 126 GLLTKAMLSLVYWLMQIYEHAIETFSENRSLTTEQQ--------EVVEKTANVLE 172
>sp|Q8K5B1|IL31R_MOUSE Interleukin-31 receptor subunit alpha OS=Mus musculus GN=Il31ra
PE=1 SV=3
Length = 716
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 14/15 (93%)
Query: 28 YHVEYFSENSTNINE 42
YH++YF+ENSTN+ E
Sbjct: 252 YHIQYFAENSTNLTE 266
>sp|O60011|ACS1_KLULA Acetyl-coenzyme A synthetase 1 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=ACS1 PE=3 SV=2
Length = 707
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 11/73 (15%)
Query: 33 FSENS--TNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETL 90
FS NS IN+ S+ ++ T++E +R GK IET++I + LKD L
Sbjct: 217 FSSNSLRDRINDAYSKTVI-TTDESKRGGK--------TIETKRIVDEALKDTPQVTNVL 267
Query: 91 QRTRTRHSHTDFI 103
RT + + +I
Sbjct: 268 VFKRTHNENIKYI 280
>sp|Q8C966|PF21B_MOUSE PHD finger protein 21B OS=Mus musculus GN=Phf21b PE=2 SV=1
Length = 487
Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 19 ISWCFLLSEYHVEYFSENSTNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATD 78
+ W +L+ H Y + + + EE+ Q+LL E++ + LE R ++A+
Sbjct: 362 VPWTGMLAIVH-SYVTHKT--VKEEEKQKLLQRGSELQSEHQQLEERDR------QLASA 412
Query: 79 VLKDLESQRETLQRTRTRHSHTDFI 103
V K LE + L R R S D I
Sbjct: 413 VKKCLELKTSLLARQRGTQSSLDRI 437
>sp|Q49L08|RPOC2_EUCGG DNA-directed RNA polymerase subunit beta'' OS=Eucalyptus globulus
subsp. globulus GN=rpoC2 PE=3 SV=1
Length = 1392
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 19 ISWCFLLSEYHVEYFSENSTNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIA 76
++W FL Y+ YF E ST I+ Q + + I + G HL++G + ++ + +
Sbjct: 1050 LNWYFLHHNYYHNYFEERSTIISLGQ---FICENVCISKNGPHLKSGQVLIVQVDSVV 1104
>sp|Q8CNY4|TIG_STAES Trigger factor OS=Staphylococcus epidermidis (strain ATCC 12228)
GN=tig PE=3 SV=1
Length = 433
Score = 29.3 bits (64), Expect = 8.0, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 40 INEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRT 95
IN E + + + + I++ G L+T Y+I+ + E+ D +KD QR T T
Sbjct: 309 INTELDRMIQEFGQRIQQQGLDLQTYYQISGQNEEQLRDQMKDDAEQRVKTNLTLT 364
>sp|Q5HNM8|TIG_STAEQ Trigger factor OS=Staphylococcus epidermidis (strain ATCC 35984 /
RP62A) GN=tig PE=3 SV=1
Length = 433
Score = 29.3 bits (64), Expect = 8.0, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 40 INEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRT 95
IN E + + + + I++ G L+T Y+I+ + E+ D +KD QR T T
Sbjct: 309 INTELDRMIQEFGQRIQQQGLDLQTYYQISGQNEEQLRDQMKDDAEQRVKTNLTLT 364
>sp|Q01969|OMPA_THEMA Outer membrane protein alpha OS=Thermotoga maritima (strain ATCC
43589 / MSB8 / DSM 3109 / JCM 10099) GN=omp-alpha PE=1
SV=2
Length = 400
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 40 INEEQSQRLLDTSEE----IERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRT 95
+NE+ ++++LDT E IE K L Y ++TE D + L+ + +Q+T
Sbjct: 268 LNEDLNKKILDTKAELSAKIESQEKTLNMVYTKLLDTESKLNDEISALKEKDAEIQKTVD 327
Query: 96 RHSHTDFINL 105
H D +NL
Sbjct: 328 LHEQ-DIVNL 336
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,822,376
Number of Sequences: 539616
Number of extensions: 1802524
Number of successful extensions: 6651
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 6615
Number of HSP's gapped (non-prelim): 60
length of query: 138
length of database: 191,569,459
effective HSP length: 103
effective length of query: 35
effective length of database: 135,989,011
effective search space: 4759615385
effective search space used: 4759615385
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)