Query psy1102
Match_columns 138
No_of_seqs 102 out of 259
Neff 3.7
Searched_HMMs 46136
Date Fri Aug 16 16:06:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1102.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1102hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1666|consensus 99.9 4.7E-25 1E-29 180.4 7.3 90 26-116 98-190 (220)
2 PF12352 V-SNARE_C: Snare regi 99.5 5E-14 1.1E-18 93.3 4.8 63 53-116 1-63 (66)
3 KOG3065|consensus 97.8 0.00012 2.6E-09 62.1 7.8 83 40-123 58-148 (273)
4 PF03908 Sec20: Sec20; InterP 97.2 0.00078 1.7E-08 47.6 4.9 60 56-116 4-63 (92)
5 smart00397 t_SNARE Helical reg 97.2 0.0011 2.3E-08 41.9 5.0 62 52-114 4-65 (66)
6 KOG3251|consensus 90.9 0.4 8.6E-06 40.0 4.5 53 57-110 126-178 (213)
7 cd00193 t_SNARE Soluble NSF (N 89.0 0.81 1.8E-05 28.2 3.8 52 60-112 6-57 (60)
8 KOG0812|consensus 87.3 4.8 0.0001 35.4 8.7 79 35-114 201-280 (311)
9 PF05739 SNARE: SNARE domain; 80.1 4.3 9.3E-05 25.8 4.2 53 60-113 4-56 (63)
10 KOG3208|consensus 76.8 4.8 0.0001 34.1 4.6 59 56-115 145-203 (231)
11 PF10828 DUF2570: Protein of u 71.4 37 0.00079 24.7 8.6 77 11-92 9-85 (110)
12 PF10186 Atg14: UV radiation r 69.5 41 0.00088 26.8 8.2 79 43-121 81-159 (302)
13 PF12352 V-SNARE_C: Snare regi 64.1 22 0.00047 23.0 4.7 56 46-102 1-57 (66)
14 PRK10132 hypothetical protein; 61.7 35 0.00076 25.4 6.0 65 32-102 1-66 (108)
15 PRK14472 F0F1 ATP synthase sub 50.8 1.1E+02 0.0024 23.5 7.5 87 2-90 5-100 (175)
16 PF06103 DUF948: Bacterial pro 49.7 74 0.0016 21.8 5.7 48 71-119 41-88 (90)
17 TIGR02284 conserved hypothetic 42.1 31 0.00068 26.0 3.1 47 53-99 91-137 (139)
18 KOG1656|consensus 38.7 54 0.0012 27.8 4.2 42 60-102 65-106 (221)
19 CHL00019 atpF ATP synthase CF0 34.6 2.2E+02 0.0047 22.1 7.3 59 32-90 43-106 (184)
20 PF10819 DUF2564: Protein of u 34.4 60 0.0013 23.5 3.4 28 85-112 40-67 (79)
21 PF11932 DUF3450: Protein of u 33.7 2.6E+02 0.0056 22.7 7.5 58 41-98 47-104 (251)
22 KOG1666|consensus 31.2 58 0.0013 27.5 3.3 29 42-70 159-187 (220)
23 PF08649 DASH_Dad1: DASH compl 31.2 1.7E+02 0.0037 19.8 5.1 37 42-78 4-41 (58)
24 TIGR00763 lon ATP-dependent pr 30.3 2.5E+02 0.0054 26.8 7.7 63 40-102 172-244 (775)
25 PRK10787 DNA-binding ATP-depen 29.1 2.2E+02 0.0047 27.6 7.1 64 39-102 174-246 (784)
26 PF07889 DUF1664: Protein of u 28.0 2.7E+02 0.0057 21.4 6.2 60 40-102 58-117 (126)
27 PF05335 DUF745: Protein of un 27.8 1.4E+02 0.003 24.3 4.9 56 53-109 109-164 (188)
28 KOG2927|consensus 26.8 39 0.00085 30.6 1.6 22 3-24 221-242 (372)
29 PF04746 DUF575: Protein of un 24.0 30 0.00065 26.0 0.4 30 5-34 23-52 (101)
30 COG2832 Uncharacterized protei 23.1 55 0.0012 25.3 1.6 19 13-31 29-47 (119)
31 PHA02602 56 dCTP pyrophosphata 21.4 53 0.0011 26.9 1.3 44 78-122 65-108 (172)
32 PF09059 TyeA: TyeA; InterPro 21.2 1.5E+02 0.0032 21.5 3.4 21 40-60 61-82 (87)
33 PLN03223 Polycystin cation cha 21.2 3.8E+02 0.0083 28.8 7.4 46 26-71 1553-1599(1634)
34 PRK10404 hypothetical protein; 21.1 2.6E+02 0.0055 20.5 4.8 12 44-55 6-17 (101)
No 1
>KOG1666|consensus
Probab=99.91 E-value=4.7e-25 Score=180.45 Aligned_cols=90 Identities=36% Similarity=0.497 Sum_probs=82.6
Q ss_pred hhhhhhhccCCCCC---CCHHHHHHHHhhhHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccccccc
Q psy1102 26 SEYHVEYFSENSTN---INEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDF 102 (138)
Q Consensus 26 ~~~~~elf~~~~~~---~s~dQR~rLL~~terLerTs~rL~~S~Ria~ETE~IG~~IL~dL~~QREqL~rtr~rL~etDs 102 (138)
+-++++++.....+ .+++||++||+||++|+||+++|++|+|||.|||+||.+|++||+.|||+|+|||.+|+++|+
T Consensus 98 ~~~rde~~~~~~add~~~~~dQR~rLl~nTerLeRst~rl~ds~Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~ 177 (220)
T KOG1666|consen 98 AGDRDELLEALEADDQNISADQRARLLQNTERLERSTDRLKDSQRIALETEQIGSEILEDLHGQREQLERARERLRETDA 177 (220)
T ss_pred cchHHHHHhhhhccccccchhHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 55777777744433 589999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhhHhhh
Q psy1102 103 INLACGSMICQTVW 116 (138)
Q Consensus 103 ~~L~~S~ri~~~~~ 116 (138)
+ +++|++|+.+|-
T Consensus 178 ~-lgkS~kiL~tM~ 190 (220)
T KOG1666|consen 178 N-LGKSRKILTTMT 190 (220)
T ss_pred h-hhHHHHHHHHHH
Confidence 6 999999999885
No 2
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=99.48 E-value=5e-14 Score=93.33 Aligned_cols=63 Identities=32% Similarity=0.424 Sum_probs=60.3
Q ss_pred HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccccccccccccchhhhHhhh
Q psy1102 53 EEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGSMICQTVW 116 (138)
Q Consensus 53 erLerTs~rL~~S~Ria~ETE~IG~~IL~dL~~QREqL~rtr~rL~etDs~~L~~S~ri~~~~~ 116 (138)
|.|.+++++|++|++++.||+++|.+|+.+|..|||+|.+++.+|++++.. +..|++++..|.
T Consensus 1 d~l~~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~-l~~s~~~l~~I~ 63 (66)
T PF12352_consen 1 DRLLRESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSN-LPKSNSLLKRIS 63 (66)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999997 999999998874
No 3
>KOG3065|consensus
Probab=97.75 E-value=0.00012 Score=62.13 Aligned_cols=83 Identities=16% Similarity=0.083 Sum_probs=66.4
Q ss_pred CCHHHHHHHHhhh-HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccccccccccccchhh-------
Q psy1102 40 INEEQSQRLLDTS-EEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGSMI------- 111 (138)
Q Consensus 40 ~s~dQR~rLL~~t-erLerTs~rL~~S~Ria~ETE~IG~~IL~dL~~QREqL~rtr~rL~etDs~~L~~S~ri------- 111 (138)
...+..+.|.+.. ..-+.|..+..++.++|.|++..|..++..|..|+|||.+++..+++++.. +..+.+.
T Consensus 58 ~~~~~~~~l~~e~~~~~~eSl~St~~~L~~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d-~~~~er~l~~l~~~ 136 (273)
T KOG3065|consen 58 EEDEEVDELEQEIESTAQESLKSTRRMLKLAEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVD-LKRAERNLTELKGL 136 (273)
T ss_pred cchHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHH-HHHHHHHHHHHHHH
Confidence 3344555555555 667788999999999999999999999999999999999999999999998 8888664
Q ss_pred hHhhhhhhccCC
Q psy1102 112 CQTVWTWWGGAP 123 (138)
Q Consensus 112 ~~~~~~~w~~~~ 123 (138)
|..+|+=|...+
T Consensus 137 ~g~~~~p~~~~~ 148 (273)
T KOG3065|consen 137 FGLLVKPFKKKR 148 (273)
T ss_pred hcccCCccccCC
Confidence 455555555444
No 4
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=97.19 E-value=0.00078 Score=47.61 Aligned_cols=60 Identities=13% Similarity=0.118 Sum_probs=55.4
Q ss_pred HHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccccccccccccchhhhHhhh
Q psy1102 56 ERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGSMICQTVW 116 (138)
Q Consensus 56 erTs~rL~~S~Ria~ETE~IG~~IL~dL~~QREqL~rtr~rL~etDs~~L~~S~ri~~~~~ 116 (138)
...++.|.++++++.++-+-|...++.|.+|.++|..+++..+++++. +.+|++++.++.
T Consensus 4 ~~vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~-l~~s~~ll~~l~ 63 (92)
T PF03908_consen 4 SDVTESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSL-LKKSRKLLKKLE 63 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 356889999999999999999999999999999999999999999996 999999888764
No 5
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=97.18 E-value=0.0011 Score=41.90 Aligned_cols=62 Identities=23% Similarity=0.174 Sum_probs=55.2
Q ss_pred hHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccccccccccccchhhhHh
Q psy1102 52 SEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGSMICQT 114 (138)
Q Consensus 52 terLerTs~rL~~S~Ria~ETE~IG~~IL~dL~~QREqL~rtr~rL~etDs~~L~~S~ri~~~ 114 (138)
...++...+.|++..+.+.|..+++..|...+..|.+.|.+....++.++.. +.++.+-+.+
T Consensus 4 ~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~-~~~~~~~l~~ 65 (66)
T smart00397 4 DQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVN-LKKANKRLKK 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHhc
Confidence 3567788889999999999999999999999999999999999999999997 8877765554
No 6
>KOG3251|consensus
Probab=90.88 E-value=0.4 Score=39.98 Aligned_cols=53 Identities=17% Similarity=0.160 Sum_probs=44.9
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccccccccccccchh
Q psy1102 57 RTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGSM 110 (138)
Q Consensus 57 rTs~rL~~S~Ria~ETE~IG~~IL~dL~~QREqL~rtr~rL~etDs~~L~~S~r 110 (138)
+-.++|.+|++.+.|.=.-|.+|+++|..||-.|..|+.+++++-.. |+=|+.
T Consensus 126 ~~~d~l~~s~~~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~~~nt-LGlSn~ 178 (213)
T KOG3251|consen 126 QENDSLKRSHNMLDDLLESGSAILENLVEQRLTLKGTQKKILDILNT-LGLSNQ 178 (213)
T ss_pred HhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcHH
Confidence 44556777777777777889999999999999999999999998887 888864
No 7
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=89.01 E-value=0.81 Score=28.18 Aligned_cols=52 Identities=21% Similarity=0.141 Sum_probs=43.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccccccccccccchhhh
Q psy1102 60 KHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGSMIC 112 (138)
Q Consensus 60 ~rL~~S~Ria~ETE~IG~~IL~dL~~QREqL~rtr~rL~etDs~~L~~S~ri~ 112 (138)
+.|..-...+.|..+++..|...+..|.|.|.+....+..++.. +.++.+-+
T Consensus 6 ~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~-~~~~~~~l 57 (60)
T cd00193 6 EELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVN-VKRANKRL 57 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 45667777788889999999999999999999999999988886 66665433
No 8
>KOG0812|consensus
Probab=87.26 E-value=4.8 Score=35.40 Aligned_cols=79 Identities=19% Similarity=0.174 Sum_probs=60.4
Q ss_pred CCCCCCCHHHHHHHHhhh-HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccccccccccccchhhhH
Q psy1102 35 ENSTNINEEQSQRLLDTS-EEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGSMICQ 113 (138)
Q Consensus 35 ~~~~~~s~dQR~rLL~~t-erLerTs~rL~~S~Ria~ETE~IG~~IL~dL~~QREqL~rtr~rL~etDs~~L~~S~ri~~ 113 (138)
+.+....++|...||+.+ +..+.=...+++..-...|--+|=.+++.=...|+|.+.|..++++++|.. ++-+.+.+.
T Consensus 201 ~gd~~~~qqqQm~ll~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~ln-I~gA~~ell 279 (311)
T KOG0812|consen 201 MGDSSNPQQQQMALLDESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLN-IEGAHSELL 279 (311)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhh-hHHHHHHHH
Confidence 334455667777777777 666666667777777788888888888888999999999999999999995 777765443
Q ss_pred h
Q psy1102 114 T 114 (138)
Q Consensus 114 ~ 114 (138)
+
T Consensus 280 K 280 (311)
T KOG0812|consen 280 K 280 (311)
T ss_pred H
Confidence 3
No 9
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=80.10 E-value=4.3 Score=25.82 Aligned_cols=53 Identities=19% Similarity=0.202 Sum_probs=43.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccccccccccccchhhhH
Q psy1102 60 KHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGSMICQ 113 (138)
Q Consensus 60 ~rL~~S~Ria~ETE~IG~~IL~dL~~QREqL~rtr~rL~etDs~~L~~S~ri~~ 113 (138)
+.|..-...+.+.-+++..|-.++..|-+.|.+....++.+... +.++..-+.
T Consensus 4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~-l~~~~~~l~ 56 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANEN-LKKGNKKLK 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 34666677778888899999999999999999999999999986 777765433
No 10
>KOG3208|consensus
Probab=76.80 E-value=4.8 Score=34.13 Aligned_cols=59 Identities=17% Similarity=0.182 Sum_probs=45.8
Q ss_pred HHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccccccccccccchhhhHhh
Q psy1102 56 ERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGSMICQTV 115 (138)
Q Consensus 56 erTs~rL~~S~Ria~ETE~IG~~IL~dL~~QREqL~rtr~rL~etDs~~L~~S~ri~~~~ 115 (138)
.+=.++|..+-+++.|.=.++.++-++|+.||-.+.+...+|.++-.. .-.-+.|++++
T Consensus 145 lkE~~~in~s~~~vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r-~P~IN~Ll~kI 203 (231)
T KOG3208|consen 145 LKEHDHINNSIRLVDELISQAQATRENLHSQRSVLGGINNKVNNIANR-FPAINQLLQKI 203 (231)
T ss_pred HHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh-cchHHHHHHHH
Confidence 445677888889999999999999999999999999999999886553 33334444443
No 11
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=71.43 E-value=37 Score=24.73 Aligned_cols=77 Identities=18% Similarity=0.230 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhccCCCCCCCHHHHHHHHhhhHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy1102 11 LGTELALLISWCFLLSEYHVEYFSENSTNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETL 90 (138)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~elf~~~~~~~s~dQR~rLL~~terLerTs~rL~~S~Ria~ETE~IG~~IL~dL~~QREqL 90 (138)
+|.-+..|..|+|..++.-+.|--+++ .|-+.+-+..+..++-.+.+..-+.++.+-...-..+-.+-...||+|
T Consensus 9 l~~lvl~L~~~l~~qs~~i~~L~a~n~-----~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~~e~i 83 (110)
T PF10828_consen 9 LAVLVLGLGGWLWYQSQRIDRLRAENK-----AQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLRQQSEERRESI 83 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444466678899988887666655432 333333333344444444555555555555555555444445555554
Q ss_pred Hh
Q psy1102 91 QR 92 (138)
Q Consensus 91 ~r 92 (138)
..
T Consensus 84 k~ 85 (110)
T PF10828_consen 84 KT 85 (110)
T ss_pred HH
Confidence 43
No 12
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=69.53 E-value=41 Score=26.79 Aligned_cols=79 Identities=14% Similarity=0.117 Sum_probs=51.3
Q ss_pred HHHHHHHhhhHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccccccccccccchhhhHhhhhhhcc
Q psy1102 43 EQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGSMICQTVWTWWGG 121 (138)
Q Consensus 43 dQR~rLL~~terLerTs~rL~~S~Ria~ETE~IG~~IL~dL~~QREqL~rtr~rL~etDs~~L~~S~ri~~~~~~~w~~ 121 (138)
.++.++-+..++++.--+.|+.-+..+....+.-......+....+.+...+.++..+...+..+-+.+|+.+..|..+
T Consensus 81 ~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~~~l~~ifpI 159 (302)
T PF10186_consen 81 RLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRRQLIQELSEIFPI 159 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3444444444555554455555555444445555666777777888888888888887776344445699999998888
No 13
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=64.11 E-value=22 Score=23.04 Aligned_cols=56 Identities=18% Similarity=0.315 Sum_probs=40.1
Q ss_pred HHHHhhhHHHHHhhHhHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHhhhcccccccc
Q psy1102 46 QRLLDTSEEIERTGKHLETGYRIAIETEK-IATDVLKDLESQRETLQRTRTRHSHTDF 102 (138)
Q Consensus 46 ~rLL~~terLerTs~rL~~S~Ria~ETE~-IG~~IL~dL~~QREqL~rtr~rL~etDs 102 (138)
++|++.++.|+++...+.+...++.+|=+ +..+ =+.|..-+.++..+..++..++.
T Consensus 1 d~l~~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Q-re~L~~~~~kl~~i~~~l~~s~~ 57 (66)
T PF12352_consen 1 DRLLRESDSLQRSHRMADETEEIGAATLEDLRSQ-REQLKRVRDKLDDIDSNLPKSNS 57 (66)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHH
Confidence 36777888888888888888888888743 3333 45667777777777777766665
No 14
>PRK10132 hypothetical protein; Provisional
Probab=61.68 E-value=35 Score=25.38 Aligned_cols=65 Identities=12% Similarity=0.110 Sum_probs=33.7
Q ss_pred hccCCCCCCCHHHHHHHHhhhHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHhhhcccccccc
Q psy1102 32 YFSENSTNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQ-RETLQRTRTRHSHTDF 102 (138)
Q Consensus 32 lf~~~~~~~s~dQR~rLL~~terLerTs~rL~~S~Ria~ETE~IG~~IL~dL~~Q-REqL~rtr~rL~etDs 102 (138)
+|+.++...-++|+++|...-..|-.+.+.| +.+|..-+.+=+.+|+.+ ...|..+++++++...
T Consensus 1 ~~~~~~~~~~~~q~e~L~~Dl~~L~~~le~l------l~~~~~~~~~~~~~lR~r~~~~L~~ar~~l~~~~~ 66 (108)
T PRK10132 1 MFNRPNRNDVDDGVQDIQNDVNQLADSLESV------LKSWGSDAKGEAEAARRKAQALLKETRARMHGRTR 66 (108)
T ss_pred CCCCCccchhhhHHHHHHHHHHHHHHHHHHH------HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 4666665666788888887777774444433 333333333323444433 2234444545554333
No 15
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=50.81 E-value=1.1e+02 Score=23.45 Aligned_cols=87 Identities=13% Similarity=0.213 Sum_probs=43.2
Q ss_pred CCccCCCcchhHHH----HHHHHHHHHhhhhhhhhccCCCCCCCHHHHHHHHhhh-----HHHHHhhHhHHHHHHHHHHH
Q psy1102 2 GLSVPTGGFLGTEL----ALLISWCFLLSEYHVEYFSENSTNINEEQSQRLLDTS-----EEIERTGKHLETGYRIAIET 72 (138)
Q Consensus 2 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~elf~~~~~~~s~dQR~rLL~~t-----erLerTs~rL~~S~Ria~ET 72 (138)
|+-...||+++... ..+|.+..++-= ..+|--.+-...-++|+..+.+. +..+++...+++....+.+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~i~Flil~~l--L~~~l~kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a 82 (175)
T PRK14472 5 GIILLSGGLLSPNPGLIFWTAVTFVIVLLI--LKKIAWGPILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKA 82 (175)
T ss_pred hhhhhcCCccCCCHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778776653 222322222111 22222222223345555544333 44555666666666666666
Q ss_pred HHHHHHHHHHHHHhhHHH
Q psy1102 73 EKIATDVLKDLESQRETL 90 (138)
Q Consensus 73 E~IG~~IL~dL~~QREqL 90 (138)
+.-...|+.+-..+-+++
T Consensus 83 ~~ea~~ii~~A~~~a~~~ 100 (175)
T PRK14472 83 DAEADKIIREGKEYAEKL 100 (175)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666555554443
No 16
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=49.73 E-value=74 Score=21.79 Aligned_cols=48 Identities=13% Similarity=0.168 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHhhhcccccccccccccchhhhHhhhhhh
Q psy1102 71 ETEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGSMICQTVWTWW 119 (138)
Q Consensus 71 ETE~IG~~IL~dL~~QREqL~rtr~rL~etDs~~L~~S~ri~~~~~~~w 119 (138)
|.+++-.++-.-+++..+.++....++..+|.- ......+-..+..+|
T Consensus 41 ~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~-~~~v~~~g~~v~~l~ 88 (90)
T PF06103_consen 41 QVDPITKEINDLLHNTNELLEDVNEKLEKVDPV-FEAVADLGESVSELN 88 (90)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHh
Confidence 445555555555666666666666666666663 555555555554444
No 17
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=42.05 E-value=31 Score=25.99 Aligned_cols=47 Identities=13% Similarity=0.095 Sum_probs=39.6
Q ss_pred HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhccccc
Q psy1102 53 EEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSH 99 (138)
Q Consensus 53 erLerTs~rL~~S~Ria~ETE~IG~~IL~dL~~QREqL~rtr~rL~e 99 (138)
+.++++=+.+.+.++-|+|.+++...+-.-|.+|+..|.+.|++++.
T Consensus 91 ~~~e~gEd~~~~~y~~aL~~~~l~~~~r~~l~~q~~~i~~~~d~i~~ 137 (139)
T TIGR02284 91 EEAERGEDRAKKAYDETLADQDTPAAARDVALRQYPGVRACHDVIRA 137 (139)
T ss_pred HHHHHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666788888888888789999999999999999999998764
No 18
>KOG1656|consensus
Probab=38.71 E-value=54 Score=27.76 Aligned_cols=42 Identities=26% Similarity=0.304 Sum_probs=30.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccccccc
Q psy1102 60 KHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDF 102 (138)
Q Consensus 60 ~rL~~S~Ria~ETE~IG~~IL~dL~~QREqL~rtr~rL~etDs 102 (138)
+-|++=++.=.+-++|+ +++..+..||+.|+++..+..-++.
T Consensus 65 qaLkrKK~~E~qL~qid-G~l~tie~Qr~alEnA~~n~Evl~~ 106 (221)
T KOG1656|consen 65 QALKRKKRYEKQLAQID-GTLSTIEFQREALENANTNTEVLDA 106 (221)
T ss_pred HHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHcccccHHHHHH
Confidence 44555555555666665 5688999999999999887766555
No 19
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=34.58 E-value=2.2e+02 Score=22.09 Aligned_cols=59 Identities=17% Similarity=0.093 Sum_probs=35.3
Q ss_pred hccCCCCCCCHHHHHHHHhh-----hHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy1102 32 YFSENSTNINEEQSQRLLDT-----SEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETL 90 (138)
Q Consensus 32 lf~~~~~~~s~dQR~rLL~~-----terLerTs~rL~~S~Ria~ETE~IG~~IL~dL~~QREqL 90 (138)
+|.-++-...-++|+..+.+ .+..+.+...+.+.+..+.+...-+.+|+.+-...-+++
T Consensus 43 ~fl~kPI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~A~~~ae~~ 106 (184)
T CHL00019 43 YFGKGVLSDLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRVNGYSEIERE 106 (184)
T ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44434433444555554433 355666777777777777777777777777665554443
No 20
>PF10819 DUF2564: Protein of unknown function (DUF2564) ; InterPro: IPR020314 This entry contains proteins with no known function.
Probab=34.39 E-value=60 Score=23.49 Aligned_cols=28 Identities=18% Similarity=0.182 Sum_probs=12.9
Q ss_pred HhhHHHHhhhcccccccccccccchhhh
Q psy1102 85 SQRETLQRTRTRHSHTDFINLACGSMIC 112 (138)
Q Consensus 85 ~QREqL~rtr~rL~etDs~~L~~S~ri~ 112 (138)
.-|++|.+++..-.++|...+..+..++
T Consensus 40 ~Ar~ql~~a~~~at~lD~~Fl~~~~~~L 67 (79)
T PF10819_consen 40 DAREQLSQAKSHATGLDEPFLQQSEQLL 67 (79)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 3444555555444444444444444433
No 21
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=33.67 E-value=2.6e+02 Score=22.67 Aligned_cols=58 Identities=24% Similarity=0.235 Sum_probs=27.9
Q ss_pred CHHHHHHHHhhhHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccc
Q psy1102 41 NEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHS 98 (138)
Q Consensus 41 s~dQR~rLL~~terLerTs~rL~~S~Ria~ETE~IG~~IL~dL~~QREqL~rtr~rL~ 98 (138)
-.++++.|++-.+.+++-.+.|+.-.+-+...-+=-..-+.+|.+|-+.+..++..+.
T Consensus 47 ~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~ 104 (251)
T PF11932_consen 47 WDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELV 104 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555544333333333333334455555555555554443
No 22
>KOG1666|consensus
Probab=31.20 E-value=58 Score=27.54 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=18.5
Q ss_pred HHHHHHHHhhhHHHHHhhHhHHHHHHHHH
Q psy1102 42 EEQSQRLLDTSEEIERTGKHLETGYRIAI 70 (138)
Q Consensus 42 ~dQR~rLL~~terLerTs~rL~~S~Ria~ 70 (138)
..||++|....++|-.+.+.|.+|.+++.
T Consensus 159 ~~QRe~L~rar~rL~~td~~lgkS~kiL~ 187 (220)
T KOG1666|consen 159 HGQREQLERARERLRETDANLGKSRKILT 187 (220)
T ss_pred HHHHHHHHHHHHHHHhchhhhhHHHHHHH
Confidence 45666666666666666666666666543
No 23
>PF08649 DASH_Dad1: DASH complex subunit Dad1; InterPro: IPR013958 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules []. Throughout the cell cycle Dad1 remains bound to kinetochores and its association is dependent on the Mis6 and Mal2 [].
Probab=31.17 E-value=1.7e+02 Score=19.84 Aligned_cols=37 Identities=22% Similarity=0.253 Sum_probs=20.9
Q ss_pred HHHHHHHHhhh-HHHHHhhHhHHHHHHHHHHHHHHHHH
Q psy1102 42 EEQSQRLLDTS-EEIERTGKHLETGYRIAIETEKIATD 78 (138)
Q Consensus 42 ~dQR~rLL~~t-erLerTs~rL~~S~Ria~ETE~IG~~ 78 (138)
..||++|++-. +.++.-...+..=-|-+.++-+||.+
T Consensus 4 e~qR~~Li~eI~~~~e~vl~nlN~LNRsLE~~i~VGkE 41 (58)
T PF08649_consen 4 ERQRDRLIQEISESMESVLNNLNALNRSLESVISVGKE 41 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Confidence 57888888655 55555554444444444445455543
No 24
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=30.32 E-value=2.5e+02 Score=26.78 Aligned_cols=63 Identities=17% Similarity=0.275 Sum_probs=47.8
Q ss_pred CC-HHHHHHHHhhh---HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHh------hHHHHhhhcccccccc
Q psy1102 40 IN-EEQSQRLLDTS---EEIERTGKHLETGYRIAIETEKIATDVLKDLESQ------RETLQRTRTRHSHTDF 102 (138)
Q Consensus 40 ~s-~dQR~rLL~~t---erLerTs~rL~~S~Ria~ETE~IG~~IL~dL~~Q------REqL~rtr~rL~etDs 102 (138)
.+ .++||+||+.. +|++.-..-|.+-..++.=..+|...|=+++.+| ||||...+..|.+.++
T Consensus 172 l~~~~eKQ~LLE~~d~~~RL~~l~~lL~~ele~l~l~~~I~~~v~~~~~~~qr~~~Lreqlk~i~~eLg~~~~ 244 (775)
T TIGR00763 172 LKEKDELQEVLETVNIEKRLKKALELLKKELELLKLQNKITKKVEEKMEKTQREYYLREQLKAIKKELGIEKD 244 (775)
T ss_pred CCcHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 45 89999999887 7888888888777666666666777777777655 6788888888876543
No 25
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=29.08 E-value=2.2e+02 Score=27.64 Aligned_cols=64 Identities=19% Similarity=0.244 Sum_probs=50.8
Q ss_pred CCCHHHHHHHHhhh---HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHh------hHHHHhhhcccccccc
Q psy1102 39 NINEEQSQRLLDTS---EEIERTGKHLETGYRIAIETEKIATDVLKDLESQ------RETLQRTRTRHSHTDF 102 (138)
Q Consensus 39 ~~s~dQR~rLL~~t---erLerTs~rL~~S~Ria~ETE~IG~~IL~dL~~Q------REqL~rtr~rL~etDs 102 (138)
..+.++||.||+.. +|++.-..-|++-..++.=-.+|-..|=+++.+| ||||...+..|.+.|+
T Consensus 174 pl~~~eKQ~LLE~~d~~eRLe~Ll~lL~~Eleil~l~~~I~~~v~~~~~k~q~e~~lreq~~~i~~elg~~~~ 246 (784)
T PRK10787 174 PLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMDD 246 (784)
T ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhhhhhhcccccCCCc
Confidence 46789999999887 8888888888776666666667777777788777 8899999999977554
No 26
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=27.97 E-value=2.7e+02 Score=21.39 Aligned_cols=60 Identities=13% Similarity=0.175 Sum_probs=35.3
Q ss_pred CCHHHHHHHHhhhHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccccccc
Q psy1102 40 INEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDF 102 (138)
Q Consensus 40 ~s~dQR~rLL~~terLerTs~rL~~S~Ria~ETE~IG~~IL~dL~~QREqL~rtr~rL~etDs 102 (138)
.-...|.+|- .|+++-..+|++...+..+|.+-=.++-.|+.+=+..+...+..|.+.+.
T Consensus 58 ~l~~tKkhLs---qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ 117 (126)
T PF07889_consen 58 SLSSTKKHLS---QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEG 117 (126)
T ss_pred HHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4445566665 45555555666666666666555555556666666666666666655444
No 27
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=27.77 E-value=1.4e+02 Score=24.26 Aligned_cols=56 Identities=14% Similarity=0.219 Sum_probs=43.2
Q ss_pred HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccccccccccccch
Q psy1102 53 EEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGS 109 (138)
Q Consensus 53 erLerTs~rL~~S~Ria~ETE~IG~~IL~dL~~QREqL~rtr~rL~etDs~~L~~S~ 109 (138)
..++.-...|+.++.-+...+.+..+.-.+|..++.=|+.++.||+..... |..++
T Consensus 109 ~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~Q-L~~Ar 164 (188)
T PF05335_consen 109 QQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQ-LQAAR 164 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 344455556667777777778888888889999999999999999988876 65554
No 28
>KOG2927|consensus
Probab=26.78 E-value=39 Score=30.55 Aligned_cols=22 Identities=45% Similarity=0.605 Sum_probs=17.6
Q ss_pred CccCCCcchhHHHHHHHHHHHH
Q psy1102 3 LSVPTGGFLGTELALLISWCFL 24 (138)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~ 24 (138)
+|+|.||||+.-++|+|.=|++
T Consensus 221 ~sig~~gfl~~IlvLaIvRlIL 242 (372)
T KOG2927|consen 221 LSIGAGGFLAFILVLAIVRLIL 242 (372)
T ss_pred eecchhHHHHHHHHHHHHHHHH
Confidence 6789999999888887766654
No 29
>PF04746 DUF575: Protein of unknown function (DUF575); InterPro: IPR006835 This represents a conserved region found in a number of Chlamydophila pneumoniae proteins.
Probab=23.99 E-value=30 Score=26.02 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=19.1
Q ss_pred cCCCcchhHHHHHHHHHHHHhhhhhhhhcc
Q psy1102 5 VPTGGFLGTELALLISWCFLLSEYHVEYFS 34 (138)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~elf~ 34 (138)
+|.=|-+=.-+-.|+|||++.---|-.+.+
T Consensus 23 IPivGhiv~GieWLvS~c~~~~v~~p~f~S 52 (101)
T PF04746_consen 23 IPIVGHIVMGIEWLVSRCFERFVTKPMFTS 52 (101)
T ss_pred ccccceEEeehHHHHHHhhhhccCCCCCch
Confidence 455555544566799999987655544433
No 30
>COG2832 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.10 E-value=55 Score=25.27 Aligned_cols=19 Identities=32% Similarity=0.405 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHhhhhhhh
Q psy1102 13 TELALLISWCFLLSEYHVE 31 (138)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~e 31 (138)
|-.-||-.|||.+|.+|-+
T Consensus 29 TPFlLLaa~cFaRsSpRf~ 47 (119)
T COG2832 29 TPFLLLAAACFARSSPRFH 47 (119)
T ss_pred cHHHHHHHHHHHcCCcHHH
Confidence 5556888999999988754
No 31
>PHA02602 56 dCTP pyrophosphatase; Provisional
Probab=21.38 E-value=53 Score=26.86 Aligned_cols=44 Identities=16% Similarity=0.233 Sum_probs=23.7
Q ss_pred HHHHHHHHhhHHHHhhhcccccccccccccchhhhHhhhhhhccC
Q psy1102 78 DVLKDLESQRETLQRTRTRHSHTDFINLACGSMICQTVWTWWGGA 122 (138)
Q Consensus 78 ~IL~dL~~QREqL~rtr~rL~etDs~~L~~S~ri~~~~~~~w~~~ 122 (138)
+|+.=++.|-.-|..--..|...=.. ++.+-.-++.+||||---
T Consensus 65 e~l~W~~~~~~ai~dE~rEL~t~Lgg-msng~k~~s~~WK~Wk~~ 108 (172)
T PHA02602 65 EILDWLRNQDDYIADETRELYTSLGG-MSNGEKDASAVWKPWKAN 108 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-cccCCccccccchHhhhh
Confidence 44444555555554322222222222 455557788999999643
No 32
>PF09059 TyeA: TyeA; InterPro: IPR015144 This domain is composed of two pairs of parallel alpha-helices, and interacts with the bacterial protein YopN via hydrophobic residues located on the helices. Association of TyeA with the C terminus of YopN is accompanied by conformational changes in both polypeptides that create order out of disorder: the resulting structure then serves as an impediment to type III secretion of YopN []. ; PDB: 1XL3_D.
Probab=21.22 E-value=1.5e+02 Score=21.50 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=14.7
Q ss_pred CCHHHHHHHHhhh-HHHHHhhH
Q psy1102 40 INEEQSQRLLDTS-EEIERTGK 60 (138)
Q Consensus 40 ~s~dQR~rLL~~t-erLerTs~ 60 (138)
.+.+||+++|+.. +.|+.+-+
T Consensus 61 ~D~EqR~~vL~a~Q~alD~aI~ 82 (87)
T PF09059_consen 61 NDEEQRQNVLDAVQEALDQAIE 82 (87)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999887 55655433
No 33
>PLN03223 Polycystin cation channel protein; Provisional
Probab=21.22 E-value=3.8e+02 Score=28.79 Aligned_cols=46 Identities=11% Similarity=0.169 Sum_probs=21.0
Q ss_pred hhhhhhhccCCCCCCCH-HHHHHHHhhhHHHHHhhHhHHHHHHHHHH
Q psy1102 26 SEYHVEYFSENSTNINE-EQSQRLLDTSEEIERTGKHLETGYRIAIE 71 (138)
Q Consensus 26 ~~~~~elf~~~~~~~s~-dQR~rLL~~terLerTs~rL~~S~Ria~E 71 (138)
||+-++-|++-..+..+ +.=+.|.+..++|.|+-+||.++|+-+.|
T Consensus 1553 a~~~~~~~g~~p~~~~~~e~~~~l~~e~~~L~~s~erL~~~Q~~l~e 1599 (1634)
T PLN03223 1553 AHMLMDQVGQVPDDEDDDEDGDVLEKEVDQLQQSLERLAEVQRELAE 1599 (1634)
T ss_pred HHHHHHHhCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555666632221111 11234444445555555555555554444
No 34
>PRK10404 hypothetical protein; Provisional
Probab=21.08 E-value=2.6e+02 Score=20.47 Aligned_cols=12 Identities=17% Similarity=0.155 Sum_probs=5.0
Q ss_pred HHHHHHhhhHHH
Q psy1102 44 QSQRLLDTSEEI 55 (138)
Q Consensus 44 QR~rLL~~terL 55 (138)
++++|...-..|
T Consensus 6 ~~~~l~~dl~~L 17 (101)
T PRK10404 6 GDTRIDDDLTLL 17 (101)
T ss_pred hhhHHHHHHHHH
Confidence 344444444333
Done!