Query psy1102
Match_columns 138
No_of_seqs 102 out of 259
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 16:06:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1102.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1102hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nps_C Vesicle transport throu 99.9 2.5E-24 8.5E-29 150.4 4.4 74 43-117 2-75 (81)
2 1gl2_C VTI1B, vesicle transpor 99.8 2.3E-20 7.9E-25 125.5 3.2 63 53-116 2-64 (65)
3 1n7s_C SNAP-25A; neuronal snar 99.6 1.3E-15 4.4E-20 106.0 6.2 69 48-117 11-79 (79)
4 1nhl_A Synaptosomal-associated 99.3 1.4E-12 4.8E-17 84.7 3.3 53 62-115 2-54 (54)
5 1l4a_C S-SNAP25 fusion protein 98.6 4.5E-08 1.5E-12 68.9 5.4 63 52-115 19-81 (83)
6 3b5n_C Protein transport prote 98.6 6.3E-08 2.2E-12 66.2 4.8 62 53-115 5-66 (70)
7 3ljc_A ATP-dependent protease 69.4 20 0.00068 27.7 7.5 62 39-100 181-251 (252)
8 1gl2_C VTI1B, vesicle transpor 53.8 19 0.00063 23.2 4.1 28 42-69 33-60 (65)
9 1sfc_D Protein (SNAP-25B), pro 48.1 38 0.0013 22.7 5.1 53 57-110 26-78 (87)
10 2nps_C Vesicle transport throu 46.0 27 0.00093 23.4 4.1 29 42-70 43-71 (81)
11 1n7s_D SNAP-25A; neuronal snar 45.8 34 0.0012 21.6 4.3 50 60-110 10-59 (66)
12 1gl2_D Syntaxin 8, vesicle tra 35.9 38 0.0013 21.3 3.4 49 61-110 10-58 (65)
13 3b5n_D Protein transport prote 33.5 86 0.0029 20.1 4.8 47 60-107 10-56 (64)
14 1nhl_A Synaptosomal-associated 31.5 79 0.0027 19.5 4.2 28 42-69 24-51 (54)
15 1u6h_B Talin; protein-protein 30.1 24 0.00082 20.3 1.5 26 42-67 2-27 (31)
16 1l4a_D S-SNAP25 fusion protein 28.7 85 0.0029 21.2 4.4 47 62-109 32-78 (87)
17 1qoy_A Hemolysin E; toxin, mem 28.4 2E+02 0.007 24.3 7.5 70 15-84 95-171 (318)
18 1obo_A Flavodoxin; electron tr 26.6 9.5 0.00033 26.8 -0.8 51 72-126 15-65 (169)
19 2nps_D Syntaxin-6; vesicle fus 26.6 62 0.0021 21.3 3.3 49 61-110 20-68 (82)
20 1czn_A Flavodoxin; FMN binding 25.0 11 0.00039 26.4 -0.7 51 72-125 14-64 (169)
21 2fcr_A Flavodoxin; electron tr 22.9 24 0.00082 25.1 0.7 48 72-123 13-61 (173)
22 5nul_A Flavodoxin; electron tr 22.4 18 0.0006 24.5 -0.1 52 72-125 12-63 (138)
23 1n7s_C SNAP-25A; neuronal snar 22.3 1.7E+02 0.0059 19.3 4.9 18 53-70 23-40 (79)
24 3pmi_A PWWP domain-containing 21.1 41 0.0014 25.4 1.7 18 17-34 79-97 (134)
25 3hd7_B Syntaxin-1A; membrane p 20.7 2E+02 0.0068 19.8 5.2 47 62-109 23-69 (109)
26 2fz5_A Flavodoxin; alpha/beta 20.1 16 0.00053 24.3 -0.8 52 72-125 13-64 (137)
No 1
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.89 E-value=2.5e-24 Score=150.39 Aligned_cols=74 Identities=39% Similarity=0.602 Sum_probs=71.6
Q ss_pred HHHHHHHhhhHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccccccccccccchhhhHhhhh
Q psy1102 43 EQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGSMICQTVWT 117 (138)
Q Consensus 43 dQR~rLL~~terLerTs~rL~~S~Ria~ETE~IG~~IL~dL~~QREqL~rtr~rL~etDs~~L~~S~ri~~~~~~ 117 (138)
+||++||+++++|++|+++|++|+++|+|||+||.+|+++|++|||+|++++++|+++|++ +++|++||..|..
T Consensus 2 ~qR~~Ll~~t~~L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~-l~~s~k~l~~M~r 75 (81)
T 2nps_C 2 SMRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDAN-LGKSSRILTGMLR 75 (81)
T ss_dssp TTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred cHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhH-HHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999997 9999999999864
No 2
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=99.79 E-value=2.3e-20 Score=125.49 Aligned_cols=63 Identities=30% Similarity=0.481 Sum_probs=58.1
Q ss_pred HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccccccccccccchhhhHhhh
Q psy1102 53 EEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGSMICQTVW 116 (138)
Q Consensus 53 erLerTs~rL~~S~Ria~ETE~IG~~IL~dL~~QREqL~rtr~rL~etDs~~L~~S~ri~~~~~ 116 (138)
++|++|+++|++|+++|.|||+||.+|+.+|++|||+|+|++++|+++|++ +++|++++..|.
T Consensus 2 ~rL~~t~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~-l~~s~k~L~~m~ 64 (65)
T 1gl2_C 2 SHMNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNEN-LSKSRKILRSMS 64 (65)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHC--
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhH-HHHHHHHHHhhc
Confidence 689999999999999999999999999999999999999999999999997 999999998874
No 3
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=99.59 E-value=1.3e-15 Score=106.00 Aligned_cols=69 Identities=12% Similarity=0.070 Sum_probs=64.7
Q ss_pred HHhhhHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccccccccccccchhhhHhhhh
Q psy1102 48 LLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGSMICQTVWT 117 (138)
Q Consensus 48 LL~~terLerTs~rL~~S~Ria~ETE~IG~~IL~dL~~QREqL~rtr~rL~etDs~~L~~S~ri~~~~~~ 117 (138)
....++++++|+++++++.++|.|||+||.+|+.+|+.|||+|.|++.+|+++|.+ +++|.+++..|.|
T Consensus 11 ~~~~~~~~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~-l~~a~k~L~~m~k 79 (79)
T 1n7s_C 11 QRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQD-MKEAEKNLKDLGK 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhH-HHHHHHHHhhhcC
Confidence 33556999999999999999999999999999999999999999999999999997 9999999998865
No 4
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=99.28 E-value=1.4e-12 Score=84.73 Aligned_cols=53 Identities=15% Similarity=0.154 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccccccccccccchhhhHhh
Q psy1102 62 LETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGSMICQTV 115 (138)
Q Consensus 62 L~~S~Ria~ETE~IG~~IL~dL~~QREqL~rtr~rL~etDs~~L~~S~ri~~~~ 115 (138)
-.++.++|.|||++|..++.+|+.|||||.|+++.|+++|++ +++|.+++..|
T Consensus 2 t~~~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~-l~~a~k~L~~m 54 (54)
T 1nhl_A 2 TRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKD-MRETEKTLTEL 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhH-HHHHHHHHhcC
Confidence 468999999999999999999999999999999999999997 99999988754
No 5
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=98.62 E-value=4.5e-08 Score=68.92 Aligned_cols=63 Identities=11% Similarity=0.077 Sum_probs=57.1
Q ss_pred hHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccccccccccccchhhhHhh
Q psy1102 52 SEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGSMICQTV 115 (138)
Q Consensus 52 terLerTs~rL~~S~Ria~ETE~IG~~IL~dL~~QREqL~rtr~rL~etDs~~L~~S~ri~~~~ 115 (138)
...-+.|.++..++.++|.|++++|..++..|+.|+|+|.|++..|+++|.. ++.|-+.+..+
T Consensus 19 ~~~~~esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~d-l~~Aek~L~~L 81 (83)
T 1l4a_C 19 NQVTDDSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQD-MKDAEKNLEGM 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHSGGGCTTC-
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhc
Confidence 3677889999999999999999999999999999999999999999999997 99887766543
No 6
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=98.57 E-value=6.3e-08 Score=66.20 Aligned_cols=62 Identities=11% Similarity=0.064 Sum_probs=54.9
Q ss_pred HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccccccccccccchhhhHhh
Q psy1102 53 EEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGSMICQTV 115 (138)
Q Consensus 53 erLerTs~rL~~S~Ria~ETE~IG~~IL~dL~~QREqL~rtr~rL~etDs~~L~~S~ri~~~~ 115 (138)
..-+.|.++..++.++|.|+|++|..++..|+.|+|+|.|++..|+++|.. +..+.+.+..+
T Consensus 5 ~~~~esl~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~-~k~aek~l~~L 66 (70)
T 3b5n_C 5 FTKQSSVASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQ-NKVADEKVAEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh
Confidence 345778899999999999999999999999999999999999999999997 88776655443
No 7
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=69.37 E-value=20 Score=27.71 Aligned_cols=62 Identities=18% Similarity=0.251 Sum_probs=50.4
Q ss_pred CCCHHHHHHHHhhh---HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHh------hHHHHhhhcccccc
Q psy1102 39 NINEEQSQRLLDTS---EEIERTGKHLETGYRIAIETEKIATDVLKDLESQ------RETLQRTRTRHSHT 100 (138)
Q Consensus 39 ~~s~dQR~rLL~~t---erLerTs~rL~~S~Ria~ETE~IG~~IL~dL~~Q------REqL~rtr~rL~et 100 (138)
..+.++|+.||+.. +|++...+-|.+-..++.=..+|...|=+++.+| ||||...+..|.+-
T Consensus 181 ~l~~~eKQ~LLe~~d~~~Rl~~l~~lL~~e~e~~~l~~~I~~~v~~~~~k~Qrey~LrEQlk~IqkELGe~ 251 (252)
T 3ljc_A 181 PLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEM 251 (252)
T ss_dssp CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 56789999999877 8888888888888877777778888888888877 77888777776543
No 8
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=53.77 E-value=19 Score=23.21 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=22.3
Q ss_pred HHHHHHHHhhhHHHHHhhHhHHHHHHHH
Q psy1102 42 EEQSQRLLDTSEEIERTGKHLETGYRIA 69 (138)
Q Consensus 42 ~dQR~rLL~~terLerTs~rL~~S~Ria 69 (138)
..||.+|....+++...-+.|.+|.+++
T Consensus 33 ~~QREql~~t~~~l~~~d~~l~~s~k~L 60 (65)
T 1gl2_C 33 GEQRDQLERTKSRLVNTNENLSKSRKIL 60 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHhHHHhHHHhHHhHHHHHHHHH
Confidence 5788888888888888888888888765
No 9
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=48.06 E-value=38 Score=22.72 Aligned_cols=53 Identities=13% Similarity=0.171 Sum_probs=40.4
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccccccccccccchh
Q psy1102 57 RTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGSM 110 (138)
Q Consensus 57 rTs~rL~~S~Ria~ETE~IG~~IL~dL~~QREqL~rtr~rL~etDs~~L~~S~r 110 (138)
+--+.|..-..++...-++|..|=++|..|-+.|.+....++.++.. +..+.+
T Consensus 26 eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~r-l~~~~~ 78 (87)
T 1sfc_D 26 EMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTR-IDEANQ 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHH
Confidence 33344555556666667788899999999999999999999998886 665543
No 10
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=45.96 E-value=27 Score=23.38 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=20.8
Q ss_pred HHHHHHHHhhhHHHHHhhHhHHHHHHHHH
Q psy1102 42 EEQSQRLLDTSEEIERTGKHLETGYRIAI 70 (138)
Q Consensus 42 ~dQR~rLL~~terLerTs~rL~~S~Ria~ 70 (138)
..||++|....+++..+-+-+.+|.+++.
T Consensus 43 ~~QRE~l~~~~~~l~~~d~~l~~s~k~l~ 71 (81)
T 2nps_C 43 SHDRERIQRARERLRETDANLGKSSRILT 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHhHHhHHHHHHHHHH
Confidence 56777777777777777777777777643
No 11
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=45.82 E-value=34 Score=21.56 Aligned_cols=50 Identities=14% Similarity=0.182 Sum_probs=38.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccccccccccccchh
Q psy1102 60 KHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGSM 110 (138)
Q Consensus 60 ~rL~~S~Ria~ETE~IG~~IL~dL~~QREqL~rtr~rL~etDs~~L~~S~r 110 (138)
+.|..-...+...-++|..|=.+|..|-+.|.+....++.++.. +..+.+
T Consensus 10 ~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~-l~~~~~ 59 (66)
T 1n7s_D 10 ENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTR-IDEANQ 59 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHH
Confidence 34455555556666788889999999999999999999988886 665543
No 12
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=35.89 E-value=38 Score=21.27 Aligned_cols=49 Identities=16% Similarity=0.183 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccccccccccccchh
Q psy1102 61 HLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGSM 110 (138)
Q Consensus 61 rL~~S~Ria~ETE~IG~~IL~dL~~QREqL~rtr~rL~etDs~~L~~S~r 110 (138)
.|+.-...+...-++|..|=++|..|-+-|.+..+.++.++.. +..+.+
T Consensus 10 ~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~-l~~~~~ 58 (65)
T 1gl2_D 10 GLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEK-LRTEAR 58 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 3444455555556678888899999999999999998888886 655543
No 13
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=33.52 E-value=86 Score=20.13 Aligned_cols=47 Identities=21% Similarity=0.278 Sum_probs=36.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhccccccccccccc
Q psy1102 60 KHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDFINLAC 107 (138)
Q Consensus 60 ~rL~~S~Ria~ETE~IG~~IL~dL~~QREqL~rtr~rL~etDs~~L~~ 107 (138)
+.|..-..++.=.-.+|..+=++|..|=++|.+...+++.+|.. +..
T Consensus 10 ~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~r-i~~ 56 (64)
T 3b5n_D 10 RNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDIN-LHM 56 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 33445555555566788999999999999999999999998886 443
No 14
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=31.47 E-value=79 Score=19.47 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=17.2
Q ss_pred HHHHHHHHhhhHHHHHhhHhHHHHHHHH
Q psy1102 42 EEQSQRLLDTSEEIERTGKHLETGYRIA 69 (138)
Q Consensus 42 ~dQR~rLL~~terLerTs~rL~~S~Ria 69 (138)
..||.+|-...+.|+....-+.+|.+++
T Consensus 24 ~~QgEql~r~~~~ld~i~~~l~~a~k~L 51 (54)
T 1nhl_A 24 DEQKEQLNRIEEGLDQINKDMRETEKTL 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHhhHHHHHhHHHHHHhHHHHHHHHH
Confidence 3566666666666666666666666554
No 15
>1u6h_B Talin; protein-protein complex, cell adhesion; 2.38A {Gallus gallus}
Probab=30.13 E-value=24 Score=20.34 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=18.1
Q ss_pred HHHHHHHHhhhHHHHHhhHhHHHHHH
Q psy1102 42 EEQSQRLLDTSEEIERTGKHLETGYR 67 (138)
Q Consensus 42 ~dQR~rLL~~terLerTs~rL~~S~R 67 (138)
.+.|++||+....+-.++.++-++-+
T Consensus 2 ~~~q~rLl~aak~vaeata~mVeaak 27 (31)
T 1u6h_B 2 LENSRKLLSAAKILADATAKMVEAAK 27 (31)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899988888888887766543
No 16
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=28.74 E-value=85 Score=21.16 Aligned_cols=47 Identities=11% Similarity=0.164 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccccccccccccch
Q psy1102 62 LETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGS 109 (138)
Q Consensus 62 L~~S~Ria~ETE~IG~~IL~dL~~QREqL~rtr~rL~etDs~~L~~S~ 109 (138)
|..-..++..--++|..|=++|..|-+.|.+....++.++.. +..+.
T Consensus 32 Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~r-l~~~n 78 (87)
T 1l4a_D 32 MKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESR-IDEAN 78 (87)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH-HTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 333344444455678888899999999999999999999886 65553
No 17
>1qoy_A Hemolysin E; toxin, membrane pore former, cytolysin, pores; 2.0A {Escherichia coli} SCOP: h.4.4.1 PDB: 2wcd_A
Probab=28.41 E-value=2e+02 Score=24.33 Aligned_cols=70 Identities=11% Similarity=0.153 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhhhhhhhhcc-CCC--CCCCHHHHHHHHhhh----HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1102 15 LALLISWCFLLSEYHVEYFS-ENS--TNINEEQSQRLLDTS----EEIERTGKHLETGYRIAIETEKIATDVLKDLE 84 (138)
Q Consensus 15 ~~~~~~~~~~~~~~~~elf~-~~~--~~~s~dQR~rLL~~t----erLerTs~rL~~S~Ria~ETE~IG~~IL~dL~ 84 (138)
...++-||--...-=.-+.+ -++ .+.+.++|+-|-.-+ ..|++++.+|+-...+-.+|.+.=.+|+.+++
T Consensus 95 v~~VfEWCvsinsTl~~~ip~i~~~~~~lS~~dkdilW~iia~al~~L~Ka~~SLe~L~~v~~~~~~Lf~~ml~dv~ 171 (318)
T 1qoy_A 95 TQTVYEWCGVATQLLAAYILLFDEYNEKKASAQKDILIKVLDDGITKLNEAQKSLLVSSQSFNNASGKLLALDSQLT 171 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899888777666654 244 567788888776443 44999999999999999999888555555543
No 18
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=26.64 E-value=9.5 Score=26.75 Aligned_cols=51 Identities=16% Similarity=0.040 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhhcccccccccccccchhhhHhhhhhhccCCCCc
Q psy1102 72 TEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGSMICQTVWTWWGGAPPQS 126 (138)
Q Consensus 72 TE~IG~~IL~dL~~QREqL~rtr~rL~etDs~~L~~S~ri~~~~~~~w~~~~~~~ 126 (138)
|+.++..|.+.|... + -.--.+.+.+...+.....|+-..++||.|.+|..
T Consensus 15 T~~vA~~ia~~l~~~-~---v~~~~~~~~~~~~l~~~d~ii~g~p~y~~g~~p~~ 65 (169)
T 1obo_A 15 TESVAEIIRDEFGND-V---VTLHDVSQAEVTDLNDYQYLIIGCPTLNIGELQSD 65 (169)
T ss_dssp HHHHHHHHHHHHCTT-T---EEEEETTTCCGGGGGGCSEEEEEEEEETTTEECHH
T ss_pred HHHHHHHHHHHhCcC-C---cEEEEcccCCHHHHhhCCEEEEEEeeCCCCcCCHH
Confidence 666777777766542 1 00112223332336666788888899998877763
No 19
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=26.63 E-value=62 Score=21.33 Aligned_cols=49 Identities=16% Similarity=-0.003 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccccccccccccchh
Q psy1102 61 HLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGSM 110 (138)
Q Consensus 61 rL~~S~Ria~ETE~IG~~IL~dL~~QREqL~rtr~rL~etDs~~L~~S~r 110 (138)
.|+.-...+...-++|..|=++|..|-+-|....+.++.++.. |..+.+
T Consensus 20 ~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~-L~~~~~ 68 (82)
T 2nps_D 20 QLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSR-LDNVMK 68 (82)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 3444455555556678888889999999999999999888886 666654
No 20
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=25.01 E-value=11 Score=26.36 Aligned_cols=51 Identities=16% Similarity=0.158 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhhcccccccccccccchhhhHhhhhhhccCCCC
Q psy1102 72 TEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGSMICQTVWTWWGGAPPQ 125 (138)
Q Consensus 72 TE~IG~~IL~dL~~QREqL~rtr~rL~etDs~~L~~S~ri~~~~~~~w~~~~~~ 125 (138)
|+.++..|.+.|... +.-.-..+.+.+...+.....|+-..++||.|.+|.
T Consensus 14 T~~vA~~ia~~l~~~---~~v~~~~~~~~~~~~l~~~d~ii~g~pty~~g~~p~ 64 (169)
T 1czn_A 14 TQTIAESIQQEFGGE---SIVDLNDIANADASDLNAYDYLIIGCPTWNVGELQS 64 (169)
T ss_dssp HHHHHHHHHHHHTST---TTEEEEEGGGCCGGGGGGCSEEEEECCEETTTEECH
T ss_pred HHHHHHHHHHHhCcc---cceEEEEhhhCCHhHHhhCCEEEEEecccCCCcCCH
Confidence 566777777776432 110111223333333666778888899999776555
No 21
>2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1
Probab=22.92 E-value=24 Score=25.10 Aligned_cols=48 Identities=21% Similarity=0.167 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhhcccccc-cccccccchhhhHhhhhhhccCC
Q psy1102 72 TEKIATDVLKDLESQRETLQRTRTRHSHT-DFINLACGSMICQTVWTWWGGAP 123 (138)
Q Consensus 72 TE~IG~~IL~dL~~QREqL~rtr~rL~et-Ds~~L~~S~ri~~~~~~~w~~~~ 123 (138)
||.|+..|.+.|....-.+ ..+.+. +...+.....|+-..++||.|.+
T Consensus 13 T~~vA~~ia~~l~~~~~~~----~~~~~~~~~~~l~~~d~ii~g~pt~~~G~~ 61 (173)
T 2fcr_A 13 TTEVADFIGKTLGAKADAP----IDVDDVTDPQALKDYDLLFLGAPTWNTGAD 61 (173)
T ss_dssp HHHHHHHHHHHHGGGBCCC----EEGGGCSCGGGGGGCSEEEEEEECCSTTCS
T ss_pred HHHHHHHHHHHhccCCcEE----EehhhcCChhHHccCCEEEEEEeecCCCCc
Confidence 6677777777775430001 122223 22236666788888999996555
No 22
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=22.41 E-value=18 Score=24.47 Aligned_cols=52 Identities=13% Similarity=0.061 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhhcccccccccccccchhhhHhhhhhhccCCCC
Q psy1102 72 TEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGSMICQTVWTWWGGAPPQ 125 (138)
Q Consensus 72 TE~IG~~IL~dL~~QREqL~rtr~rL~etDs~~L~~S~ri~~~~~~~w~~~~~~ 125 (138)
|+.++..|.+.|....- +-.--.+.+.+...+.....|+-..++|+.+.+|.
T Consensus 12 T~~iA~~ia~~l~~~g~--~v~~~~~~~~~~~~l~~~d~iiig~pty~~g~~p~ 63 (138)
T 5nul_A 12 TEKMAELIAKGIIESGK--DVNTINVSDVNIDELLNEDILILGCSAMTDEVLEE 63 (138)
T ss_dssp HHHHHHHHHHHHHHTTC--CCEEEEGGGCCHHHHTTCSEEEEEECCBTTTBCCT
T ss_pred HHHHHHHHHHHHHHCCC--eEEEEEhhhCCHHHHhhCCEEEEEcCccCCCCCCh
Confidence 67777778777765321 00011223333223566677888889999998774
No 23
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=22.32 E-value=1.7e+02 Score=19.31 Aligned_cols=18 Identities=22% Similarity=0.185 Sum_probs=7.8
Q ss_pred HHHHHhhHhHHHHHHHHH
Q psy1102 53 EEIERTGKHLETGYRIAI 70 (138)
Q Consensus 53 erLerTs~rL~~S~Ria~ 70 (138)
++++++..-..++..+..
T Consensus 23 ~s~~~~l~~a~Ete~~G~ 40 (79)
T 1n7s_C 23 ESTRRMLQLVEESKDAGI 40 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444433
No 24
>3pmi_A PWWP domain-containing protein MUM1; structural genomics consortium, SGC, protein binding, nucLeu; HET: UNL; 2.82A {Homo sapiens}
Probab=21.15 E-value=41 Score=25.40 Aligned_cols=18 Identities=33% Similarity=0.700 Sum_probs=13.4
Q ss_pred HHHHHHHHh-hhhhhhhcc
Q psy1102 17 LLISWCFLL-SEYHVEYFS 34 (138)
Q Consensus 17 ~~~~~~~~~-~~~~~elf~ 34 (138)
--|.||+.| +|||+.|=-
T Consensus 79 qsi~Wc~sLI~~YR~~lgc 97 (134)
T 3pmi_A 79 QDIGWCVSLITDYRVRLGC 97 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred cchhhhhhhhhhhheeeec
Confidence 358899965 888887644
No 25
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=20.69 E-value=2e+02 Score=19.82 Aligned_cols=47 Identities=17% Similarity=0.042 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccccccccccccch
Q psy1102 62 LETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGS 109 (138)
Q Consensus 62 L~~S~Ria~ETE~IG~~IL~dL~~QREqL~rtr~rL~etDs~~L~~S~ 109 (138)
+.+-.+-+.|-.++=.....-...|.|.|.+...++.++..+ +.++.
T Consensus 23 I~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~-v~~g~ 69 (109)
T 3hd7_B 23 IIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDY-VERAV 69 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHH
Confidence 555556666777777888888899999999999888888875 66664
No 26
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=20.11 E-value=16 Score=24.31 Aligned_cols=52 Identities=13% Similarity=0.139 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhhcccccccccccccchhhhHhhhhhhccCCCC
Q psy1102 72 TEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGSMICQTVWTWWGGAPPQ 125 (138)
Q Consensus 72 TE~IG~~IL~dL~~QREqL~rtr~rL~etDs~~L~~S~ri~~~~~~~w~~~~~~ 125 (138)
|+.+...|.+.|...--.++ --.+.+.|...+.....++-..++||.+.||+
T Consensus 13 T~~~a~~i~~~l~~~g~~v~--~~~~~~~~~~~l~~~d~vi~g~p~y~~~~~~~ 64 (137)
T 2fz5_A 13 TEAMANEIEAAVKAAGADVE--SVRFEDTNVDDVASKDVILLGCPAMGSEELED 64 (137)
T ss_dssp HHHHHHHHHHHHHHTTCCEE--EEETTSCCHHHHHTCSEEEEECCCBTTTBCCH
T ss_pred HHHHHHHHHHHHHhCCCeEE--EEEcccCCHHHHhcCCEEEEEccccCCCCCCH
Confidence 45555556655544210000 01233333223556677788889999999997
Done!