Query psy1102
Match_columns 138
No_of_seqs 102 out of 259
Neff 3.7
Searched_HMMs 13730
Date Fri Aug 16 16:06:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1102.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1102hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d5nula_ c.23.5.1 (A:) Flavodox 27.0 5.2 0.00038 25.8 -0.4 53 72-126 12-64 (138)
2 d1wc9a_ d.278.1.2 (A:) Traffic 21.1 88 0.0064 21.5 5.4 29 105-133 61-89 (161)
3 d1oboa_ c.23.5.1 (A:) Flavodox 18.7 8.1 0.00059 26.4 -0.8 51 72-126 15-65 (169)
4 d1feca2 c.3.1.5 (A:170-286) Tr 15.8 30 0.0022 21.4 1.6 31 5-36 23-53 (117)
5 d1onfa2 c.3.1.5 (A:154-270) Gl 15.6 30 0.0022 22.0 1.5 29 5-37 27-55 (117)
6 d1m6ia2 c.3.1.5 (A:264-400) Ap 15.2 31 0.0023 22.2 1.5 15 5-19 42-56 (137)
7 d2fcra_ c.23.5.1 (A:) Flavodox 14.9 19 0.0014 24.9 0.4 52 72-126 13-64 (173)
8 d2fz5a1 c.23.5.1 (A:1-137) Fla 14.5 12 0.00086 24.0 -0.8 52 72-125 13-64 (137)
9 d1d7ya2 c.3.1.5 (A:116-236) NA 13.7 36 0.0026 21.7 1.5 29 5-37 35-63 (121)
10 d1aoga2 c.3.1.5 (A:170-286) Tr 13.6 37 0.0027 21.2 1.6 32 5-37 25-56 (117)
No 1
>d5nula_ c.23.5.1 (A:) Flavodoxin {Clostridium beijerinckii [TaxId: 1520]}
Probab=27.04 E-value=5.2 Score=25.75 Aligned_cols=53 Identities=15% Similarity=0.053 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhhcccccccccccccchhhhHhhhhhhccCCCCc
Q psy1102 72 TEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGSMICQTVWTWWGGAPPQS 126 (138)
Q Consensus 72 TE~IG~~IL~dL~~QREqL~rtr~rL~etDs~~L~~S~ri~~~~~~~w~~~~~~~ 126 (138)
||.++..|.+.|...- ++-.-.++.+++..-+.....++-...+|..|.+|..
T Consensus 12 T~~vA~~ia~~l~~~g--~~v~~~~~~~~~~~~l~~~~~~i~g~pt~~~g~~p~~ 64 (138)
T d5nula_ 12 TEKMAELIAKGIIESG--KDVNTINVSDVNIDELLNEDILILGCSAMTDEVLEES 64 (138)
T ss_dssp HHHHHHHHHHHHHHTT--CCCEEEEGGGCCHHHHTTCSEEEEEECCBTTTBCCTT
T ss_pred HHHHHHHHHHHHHhcC--CcceecccccccccccccCCeEEEEEeccCCCCCChH
Confidence 6777888887776522 1222223444443335556677777788888887754
No 2
>d1wc9a_ d.278.1.2 (A:) Trafficking protein particle complex subunit 3, Bet3 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.06 E-value=88 Score=21.46 Aligned_cols=29 Identities=21% Similarity=0.472 Sum_probs=24.8
Q ss_pred cccchhhhHhhhhhhccCCCCcccccccc
Q psy1102 105 LACGSMICQTVWTWWGGAPPQSLNWNLLG 133 (138)
Q Consensus 105 L~~S~ri~~~~~~~w~~~~~~~~~~~~~~ 133 (138)
+.-..-||..+|+-+=|.++..++||--|
T Consensus 61 l~~l~fI~~~~wk~~fgk~~d~l~~~~~~ 89 (161)
T d1wc9a_ 61 RETADVIAKVAFKMYLGITPSITNWSPAG 89 (161)
T ss_dssp HHHHHHHHHTHHHHHHSCCCEEECCCTTS
T ss_pred HHHHHHHHHHHHHHHcCCCcccceecCCC
Confidence 55557799999999999999999998654
No 3
>d1oboa_ c.23.5.1 (A:) Flavodoxin {Anabaena, pcc 7119 and 7120 [TaxId: 1163]}
Probab=18.73 E-value=8.1 Score=26.40 Aligned_cols=51 Identities=14% Similarity=0.047 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhhcccccccccccccchhhhHhhhhhhccCCCCc
Q psy1102 72 TEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGSMICQTVWTWWGGAPPQS 126 (138)
Q Consensus 72 TE~IG~~IL~dL~~QREqL~rtr~rL~etDs~~L~~S~ri~~~~~~~w~~~~~~~ 126 (138)
||.|+..|.+.|.... + . =..+.+++..-+.....++-...+|..|.||..
T Consensus 15 Te~vA~~I~~~l~~~~--~-~-v~~i~~~~~~~l~~~d~~i~g~sT~g~G~~p~~ 65 (169)
T d1oboa_ 15 TESVAEIIRDEFGNDV--V-T-LHDVSQAEVTDLNDYQYLIIGCPTLNIGELQSD 65 (169)
T ss_dssp HHHHHHHHHHHHCTTT--E-E-EEETTTCCGGGGGGCSEEEEEEEEETTTEECHH
T ss_pred HHHHHHHHHHHhccCC--c-e-EEEcccCChhhhccCCEEEEEEecCCCCCCChh
Confidence 6777888877774321 1 0 123444444446666778888899999988854
No 4
>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}
Probab=15.76 E-value=30 Score=21.44 Aligned_cols=31 Identities=16% Similarity=0.193 Sum_probs=17.5
Q ss_pred cCCCcchhHHHHHHHHHHHHhhhhhhhhccCC
Q psy1102 5 VPTGGFLGTELALLISWCFLLSEYHVEYFSEN 36 (138)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~elf~~~ 36 (138)
|--||++|.|+|-.+.=+ ...--+|.++...
T Consensus 23 IiGgG~ig~E~A~~l~~~-~~~g~~Vtli~~~ 53 (117)
T d1feca2 23 CVGGGYISIEFAGIFNAY-KARGGQVDLAYRG 53 (117)
T ss_dssp EECSSHHHHHHHHHHHHH-SCTTCEEEEEESS
T ss_pred EECCChHHHHHHHHhHhh-cccccccceeccc
Confidence 346899999999644221 1111255666544
No 5
>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}
Probab=15.56 E-value=30 Score=21.96 Aligned_cols=29 Identities=17% Similarity=0.292 Sum_probs=20.4
Q ss_pred cCCCcchhHHHHHHHHHHHHhhhhhhhhccCCC
Q psy1102 5 VPTGGFLGTELALLISWCFLLSEYHVEYFSENS 37 (138)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~elf~~~~ 37 (138)
|--||+.|.|+|..++ ....+|-++...+
T Consensus 27 IiGgG~iG~E~A~~l~----~~g~~Vtlv~~~~ 55 (117)
T d1onfa2 27 IVGSGYIAVELINVIK----RLGIDSYIFARGN 55 (117)
T ss_dssp EECCSHHHHHHHHHHH----TTTCEEEEECSSS
T ss_pred EECCchHHHHHHHHHH----hccccceeeehhc
Confidence 3468999999997653 4456777777544
No 6
>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.15 E-value=31 Score=22.20 Aligned_cols=15 Identities=53% Similarity=0.928 Sum_probs=12.2
Q ss_pred cCCCcchhHHHHHHH
Q psy1102 5 VPTGGFLGTELALLI 19 (138)
Q Consensus 5 ~~~~~~~~~~~~~~~ 19 (138)
|--|||.|.|+|.-+
T Consensus 42 IvGgG~~G~E~A~~l 56 (137)
T d1m6ia2 42 IIGGGFLGSELACAL 56 (137)
T ss_dssp EECCSHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHH
Confidence 456899999999755
No 7
>d2fcra_ c.23.5.1 (A:) Flavodoxin {Chondrus crispus [TaxId: 2769]}
Probab=14.91 E-value=19 Score=24.86 Aligned_cols=52 Identities=21% Similarity=0.158 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhhcccccccccccccchhhhHhhhhhhccCCCCc
Q psy1102 72 TEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGSMICQTVWTWWGGAPPQS 126 (138)
Q Consensus 72 TE~IG~~IL~dL~~QREqL~rtr~rL~etDs~~L~~S~ri~~~~~~~w~~~~~~~ 126 (138)
||.|+..|.+.|...-... .+-....+..-+.+...++-...+|-.|.||..
T Consensus 13 Te~vA~~Ia~~l~~~~~~~---v~~~~~~~~~~l~~~d~li~g~sT~g~Ge~p~~ 64 (173)
T d2fcra_ 13 TTEVADFIGKTLGAKADAP---IDVDDVTDPQALKDYDLLFLGAPTWNTGADTER 64 (173)
T ss_dssp HHHHHHHHHHHHGGGBCCC---EEGGGCSCGGGGGGCSEEEEEEECCSTTCSSCC
T ss_pred HHHHHHHHHHHHhhcCCCe---EEEeccchhhccccCCeEEEEEeccCCCCCchh
Confidence 6777777777775432111 111112233336666788999999999988864
No 8
>d2fz5a1 c.23.5.1 (A:1-137) Flavodoxin {Megasphaera elsdenii [TaxId: 907]}
Probab=14.51 E-value=12 Score=24.01 Aligned_cols=52 Identities=13% Similarity=0.102 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHhhhcccccccccccccchhhhHhhhhhhccCCCC
Q psy1102 72 TEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGSMICQTVWTWWGGAPPQ 125 (138)
Q Consensus 72 TE~IG~~IL~dL~~QREqL~rtr~rL~etDs~~L~~S~ri~~~~~~~w~~~~~~ 125 (138)
||.++..|.+.|.... +.-.--.+.+++..-+..+..|+-...+|..|..|.
T Consensus 13 Te~~A~~ia~~l~~~g--~~v~~~~~~~~~~~~l~~~d~ii~g~pT~~~g~~p~ 64 (137)
T d2fz5a1 13 TEAMANEIEAAVKAAG--ADVESVRFEDTNVDDVASKDVILLGCPAMGSEELED 64 (137)
T ss_dssp HHHHHHHHHHHHHHTT--CCEEEEETTSCCHHHHHTCSEEEEECCCBTTTBCCH
T ss_pred HHHHHHHHHHHHHhcC--CceEEeehhhHHHhhhhccceEEEEEecccCCcCCh
Confidence 6778888887776532 111112233444333556667777778888887664
No 9
>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}
Probab=13.71 E-value=36 Score=21.68 Aligned_cols=29 Identities=28% Similarity=0.425 Sum_probs=19.0
Q ss_pred cCCCcchhHHHHHHHHHHHHhhhhhhhhccCCC
Q psy1102 5 VPTGGFLGTELALLISWCFLLSEYHVEYFSENS 37 (138)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~elf~~~~ 37 (138)
|--|||+|.|+|-.+. ....+|-++...+
T Consensus 35 IIGgG~iG~E~A~~l~----~~g~~Vtli~~~~ 63 (121)
T d1d7ya2 35 IVGGGVIGLELAATAR----TAGVHVSLVETQP 63 (121)
T ss_dssp EECCSHHHHHHHHHHH----HTTCEEEEEESSS
T ss_pred EECcchhHHHHHHHhh----cccceEEEEeecc
Confidence 4468999999986443 2345666666444
No 10
>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}
Probab=13.60 E-value=37 Score=21.16 Aligned_cols=32 Identities=19% Similarity=0.230 Sum_probs=18.1
Q ss_pred cCCCcchhHHHHHHHHHHHHhhhhhhhhccCCC
Q psy1102 5 VPTGGFLGTELALLISWCFLLSEYHVEYFSENS 37 (138)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~elf~~~~ 37 (138)
|--||+.|.|+|..+.-. -.....|.++...+
T Consensus 25 ivGgG~ig~E~A~~l~~l-~~~~~~Vtli~~~~ 56 (117)
T d1aoga2 25 TVGGGFISVEFAGIFNAY-KPKDGQVTLCYRGE 56 (117)
T ss_dssp EECSSHHHHHHHHHHHHH-CCTTCEEEEEESSS
T ss_pred EECCcHHHHHHHHHhhhc-ccCCcEEEEEeccc
Confidence 345899999999544311 11122466766433
Done!