RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1102
(138 letters)
>2nps_C Vesicle transport through interaction with T- snares homolog 1A;
vesicle fusion, snare complex, early endosomal snare
complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus
norvegicus}
Length = 81
Score = 66.4 bits (162), Expect = 8e-16
Identities = 26/58 (44%), Positives = 38/58 (65%)
Query: 44 QSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTD 101
LLD +E +ER+ + LE GY+IA+ETE+I ++L++L RE +QR R R TD
Sbjct: 3 MRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETD 60
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane
protein, membrane fusion protein complex, coiled coil,
transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Length = 65
Score = 59.0 bits (143), Expect = 5e-13
Identities = 17/47 (36%), Positives = 34/47 (72%)
Query: 55 IERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTD 101
+ R + +E +RIA ET++I T+++++L QR+ L+RT++R +T+
Sbjct: 4 MNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTN 50
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.3 bits (70), Expect = 0.058
Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 10/58 (17%)
Query: 42 EEQSQRL--LDTSEE------IERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQ 91
EEQ +RL LD + + E+ K LE + ++E++ + + + + + Q
Sbjct: 92 EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQ--RQSEQVEKNKINNRIADKAFYQ 147
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.16
Identities = 21/122 (17%), Positives = 38/122 (31%), Gaps = 37/122 (30%)
Query: 31 EYFSENSTNINEEQSQRLLDTSEE-----IERTGKHLETGYRIAIETEKIATDVLKDLES 85
+YF E + L T I+ + + L R ++ EK+ T L ++
Sbjct: 168 DYFEE---------LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL-NILE 217
Query: 86 QRETLQRTRTRHSHTDFIN-------------LACGSMICQTVWTWWGGAPPQSLNWNLL 132
L+ D++ LA + + + G P L L
Sbjct: 218 W---LENPSNTPD-KDYLLSIPISCPLIGVIQLAHYVVTAKLL-----GFTPGELRSYLK 268
Query: 133 GS 134
G+
Sbjct: 269 GA 270
Score = 26.2 bits (57), Expect = 5.0
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 6/33 (18%)
Query: 38 TNINEEQSQRLLDTSEEIERTGKHLETGYRIAI 70
+N+ +EQ Q + +T HL G ++ I
Sbjct: 342 SNLTQEQVQDY------VNKTNSHLPAGKQVEI 368
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion,
neurotransmission, endocytosis/exocytosis complex; 2.95A
{Loligo pealei} SCOP: h.1.15.1
Length = 83
Score = 28.8 bits (64), Expect = 0.20
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 38 TNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRH 97
T + E Q Q T + +E T + L + E+++ L L+ Q E L R
Sbjct: 9 TELEEIQQQCNQVTDDSLESTRRML----NMCEESKEAGIRTLVMLDEQGEQLDRI---E 61
Query: 98 SHTDFIN 104
D IN
Sbjct: 62 EGLDQIN 68
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle,
transport protein; 1.45A {Rattus norvegicus} SCOP:
h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C
3rk3_C 3rl0_C 1kil_C 1jth_A
Length = 79
Score = 28.7 bits (64), Expect = 0.22
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 7/68 (10%)
Query: 37 STNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTR 96
+ E Q + E +E T + L ++ E++ L L+ Q E L R
Sbjct: 4 RNELEEMQRRADQLADESLESTRRML----QLVEESKDAGIRTLVMLDEQGEQLDRV--- 56
Query: 97 HSHTDFIN 104
+ IN
Sbjct: 57 EEGMNHIN 64
>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3;
alpha-beta plait, trapp complex, palmitoylated,
transport PR; HET: PLM; 1.55A {Homo sapiens} PDB:
2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A*
1wc9_A* 2c0j_A*
Length = 200
Score = 28.8 bits (64), Expect = 0.50
Identities = 16/86 (18%), Positives = 26/86 (30%), Gaps = 17/86 (19%)
Query: 46 QRLLDTSEEIERTGKHLE-TGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDFIN 104
+L E E K L+ G+ I + L + R + R D I
Sbjct: 37 TQLCKDYENDEDVNKQLDKMGFNIGVR--------LIEDFLARSNVGRCHDFRETADVI- 87
Query: 105 LACGSMICQTVWTWWGGAPPQSLNWN 130
+ + + G P NW+
Sbjct: 88 -------AKVAFKMYLGITPSITNWS 106
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 27.9 bits (61), Expect = 1.0
Identities = 5/37 (13%), Positives = 16/37 (43%)
Query: 26 SEYHVEYFSENSTNINEEQSQRLLDTSEEIERTGKHL 62
S ++ + + ++RL ++++ + HL
Sbjct: 229 SRPALKALRQWLAPASRRSTRRLYAQAQKLRKHSSHL 265
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b*
Length = 527
Score = 27.5 bits (62), Expect = 1.4
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 9/55 (16%)
Query: 48 LLDTSEE-IERTGKH---LETGYRIAIET-----EKIATDVLKDLESQRETLQRT 93
LL +E+ I+++ H + GYR+A K A D D RE L
Sbjct: 102 LLREAEKLIDQSKIHPQTIIEGYRLASAAALDALTKAAVDNSHDKTMFREDLIHI 156
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 27.6 bits (60), Expect = 1.8
Identities = 10/67 (14%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 26 SEYHVEYFSENSTNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDL-- 83
S+ V+ + + +++L + S ++ + HL T LK+
Sbjct: 312 SKQGVKTMRMRLCPESRKSARKLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQ 371
Query: 84 ESQRETL 90
+ Q + +
Sbjct: 372 QQQNQLV 378
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide
transferase; purine ribonucleotide biosynthesis; HET:
ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Length = 433
Score = 27.2 bits (61), Expect = 1.9
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 68 IAIETEKIATDVLKDLESQ 86
I E E I D L + E
Sbjct: 86 IIPEIEAINLDALFEFEKD 104
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g*
Length = 550
Score = 27.1 bits (61), Expect = 2.1
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Query: 65 GYRIAIET-----EKIATDVLKDLESQRETLQR 92
GYR A+ ++A D+ + S RE L+R
Sbjct: 128 GYRKAVSLAVEKINELAVDITSEKSSGRELLER 160
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 27.2 bits (59), Expect = 2.2
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 30 VEYFSENSTNINEEQSQRLLDTSEEIERTGKHL 62
+E E + I EEQ+++ D + ++E+
Sbjct: 652 LENVLEINKRITEEQARKAFDRATKLEQEFTEC 684
>1xov_A PLY protein, plypsa; alpha/beta hydrolase, multi-domain, hydrolase;
1.80A {Listeria phage psa} SCOP: b.34.11.4 c.56.5.6
Length = 326
Score = 26.8 bits (59), Expect = 2.4
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 71 ETEKIATDVLKDLESQRETLQRTRTRHSHTDFINLA 106
E EK+ +L+ + ++ R S T NL
Sbjct: 38 EAEKVLNAASDELKREGHNVKTFIDRTSTTQSANLN 73
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Length = 513
Score = 26.3 bits (59), Expect = 3.4
Identities = 8/34 (23%), Positives = 11/34 (32%), Gaps = 5/34 (14%)
Query: 65 GYRIAIET-----EKIATDVLKDLESQRETLQRT 93
G+R A + A D D R+ L
Sbjct: 116 GWREATKAARQALLNSAVDHGSDEVKFRQDLMNI 149
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil,
alanine, axial stagger, radius, SIDE-chain packing,
crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Length = 147
Score = 25.8 bits (56), Expect = 3.9
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 35 ENSTNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETE---KIATDVLKDLESQRETLQ 91
E++ EE +++L+ ++ER + E E E K T+ LK LE + E L
Sbjct: 69 EDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELL 128
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin,
synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1,
SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
SCOP: h.1.15.1
Length = 70
Score = 24.8 bits (54), Expect = 4.4
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 67 RIAIETEKIATDVLKDLESQRETLQRT 93
++A + E+ + L L Q E L
Sbjct: 19 KMAQDAERAGMNTLGMLGHQSEQLNNV 45
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 26.3 bits (57), Expect = 4.4
Identities = 6/37 (16%), Positives = 17/37 (45%)
Query: 26 SEYHVEYFSENSTNINEEQSQRLLDTSEEIERTGKHL 62
S+ V+ + + +++L + S ++ + HL
Sbjct: 320 SKQGVKTMRMRLCPESRKSARKLYERSHKLRKNNHHL 356
>3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural
genomics, synthetase; 1.60A {Burkholderia pseudomallei}
PDB: 3gwe_A
Length = 365
Score = 26.0 bits (58), Expect = 5.3
Identities = 6/21 (28%), Positives = 10/21 (47%), Gaps = 2/21 (9%)
Query: 41 NEEQSQRLLDTSEE--IERTG 59
N+ +Q D E + +TG
Sbjct: 47 NDVLAQLYPDWPAEKILAKTG 67
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase;
2.70A {Sulfolobus tokodaii}
Length = 373
Score = 25.9 bits (58), Expect = 5.4
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 50 DTSEEI-ERTGKHLETGYRIAIETEKIATDVLKD 82
++ + E+ G + T Y+IA + E+I L
Sbjct: 269 QYAKLLAEKEGGEIYTLYQIAEKVEEIGIKYLGP 302
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein,
nuclear protein, neurogenesis, cytosk LIS1 binding,
differentiation; 2.24A {Rattus norvegicus}
Length = 189
Score = 25.5 bits (55), Expect = 5.5
Identities = 11/53 (20%), Positives = 19/53 (35%)
Query: 42 EEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTR 94
E+ + L + + E AIE L + ES ++QR +
Sbjct: 115 EQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLK 167
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding,
acetylation, GTP-binding, HOST-virus interaction,
nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus
musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Length = 1073
Score = 26.0 bits (56), Expect = 5.6
Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 4/95 (4%)
Query: 38 TNINEEQSQRLLDTSEE--IERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRT 95
T + + +++LLD S++ I + Y +++A +VL L+ + R T
Sbjct: 8 TMLADHAARQLLDFSQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDT 67
Query: 96 --RHSHTDFINLACGSMICQTVWTWWGGAPPQSLN 128
S ++ + T W P
Sbjct: 68 ILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCE 102
>3n5w_A Nitric oxide synthase; heme enzyme, substrate inhibitor, Zn
oxidoreductase, oxidoreductase-oxidoreductase inhibitor
COM; HET: HEM XFJ; 1.73A {Rattus norvegicus} PDB:
2hx3_A* 2hx4_A* 3b3m_A* 3b3n_A* 3b3o_A* 3b3p_A* 3hsn_A*
3hso_A* 3hsp_A* 3jt3_A* 3jt4_A* 3jt5_A* 3jt6_A* 3jt7_A*
3jt8_A* 3jt9_A* 3jta_A* 3n2r_A* 3n5v_A* 1om4_A* ...
Length = 422
Score = 26.0 bits (57), Expect = 5.6
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 31 EYFSENSTNINEEQSQRLLDTSEEIERTG------KHLETGYRIA 69
+Y+S ++ RL + ++EIE T L G + A
Sbjct: 68 QYYSSIKRFGSKAHMDRLEEVNKEIESTSTYQLKDTELIYGAKHA 112
>2c0j_B R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens} PDB: 2j3t_B*
Length = 160
Score = 25.2 bits (55), Expect = 6.3
Identities = 17/108 (15%), Positives = 27/108 (25%), Gaps = 28/108 (25%)
Query: 23 FLLSEYHVEYFSENSTNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKD 82
FL +E V + + + L +E G + G +
Sbjct: 10 FLHTEM-VAELWAHDPDPGPGGQKMSL---SVLEGMGFRV--GQALG------------- 50
Query: 83 LESQRETLQRTRTRHSHTDFINLACGSMICQTVWTWWGGAPPQSLNWN 130
E L R L +C+ +W SL N
Sbjct: 51 -----ERLPRETLAFREE----LDVLKFLCKDLWVAVFQKQMDSLRTN 89
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.6 bits (55), Expect = 6.8
Identities = 14/110 (12%), Positives = 37/110 (33%), Gaps = 35/110 (31%)
Query: 21 WCFLLSEYHV------EYFSE---------------NSTNINEEQSQRLLDTSEEIERTG 59
+ + +H+ E + + S +L+T ++++
Sbjct: 473 FYSHIG-HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK 531
Query: 60 KHL---ETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDFINLA 106
++ + Y E++ +L L E L ++ +TD + +A
Sbjct: 532 PYICDNDPKY------ERLVNAILDFLPKIEENLICSK----YTDLLRIA 571
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing
cluster, hydrophobic core, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Length = 155
Score = 25.3 bits (55), Expect = 7.1
Identities = 12/59 (20%), Positives = 28/59 (47%)
Query: 42 EEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHT 100
EE+ + + + + +E + E K+ +D LK+ E++ E +R+ T+ +
Sbjct: 48 EEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKS 106
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-;
ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP
MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1
d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A*
1ez1_A*
Length = 391
Score = 25.6 bits (57), Expect = 7.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 71 ETEKIATDVLKDLESQ 86
E E IATD+L LE +
Sbjct: 81 EIEAIATDMLIQLEEE 96
>3e7m_A Nitric oxide synthase, inducible; NOS, heme, tetrahydrobiopterin,
oxido calmodulin-binding, FAD, FMN, iron, metal-binding,
NADP, oxidoreductase; HET: HEM H4B AT2; 2.00A {Mus
musculus} SCOP: d.174.1.1 PDB: 2y37_A* 1r35_A* 3e67_A*
3e68_A* 3e6l_A* 3e6n_A* 3e6o_A* 3e6t_A* 3e7i_A* 3e65_A*
3e7t_A* 3eai_A* 3ebd_A* 3ebf_A* 3nqs_A* 1m8d_A* 1m8e_A*
1m8h_A* 1m8i_A* 1m9t_A* ...
Length = 433
Score = 25.6 bits (56), Expect = 7.3
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 31 EYFSENSTNINEEQSQRLLDTSEEIERTG------KHLETGYRIA 69
+Y+ EE RL ++EIE TG L ++A
Sbjct: 78 QYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMA 122
>1x9b_A Hypothetical membrane protein TA0354_69_121; alpha protein,
structural genomics, protein structure initiative, PSI;
NMR {Thermoplasma acidophilum} SCOP: a.10.2.1
Length = 53
Score = 23.6 bits (50), Expect = 8.0
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 40 INEEQSQRLLDTSEEIERTGKHLETGYRIAIETEK 74
IN + E+E L YRI ++ K
Sbjct: 13 INSPSKSVFVRNLNELEALAVRLGKSYRIQLDQAK 47
>2j3w_B ZGC 92866, trafficking protein particle complex protein 2;
multisubunit tethering factor, trapp, palmitate,
transport, lipoprotein; HET: PLM; 2.1A {Brachydanio
rerio} SCOP: d.278.1.2 PDB: 2j3r_B*
Length = 188
Score = 24.9 bits (54), Expect = 8.2
Identities = 18/111 (16%), Positives = 35/111 (31%), Gaps = 30/111 (27%)
Query: 20 SWCFLLSEYHVEYFSENSTNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDV 79
++ L SE V+Y +++E Q++ + G+ + G +
Sbjct: 28 AFALLFSEM-VQYCQSRVYSVSELQAR--------LADMGQGV--GASL----------- 65
Query: 80 LKDLESQRETLQRTRTRHSHTDFINLACGSMICQTVWTWWGGAPPQSLNWN 130
L+ + R + T +N+ I VW G L
Sbjct: 66 ---LDVL---VMREKNGKRETKVLNIL--LFIKVNVWKALFGKEADKLEQA 108
>2ort_A Nitric oxide synthase, inducible; L-arginine monooxygenase, heme,
dimerization, inhibitor, NOS, oxidoreductase; HET: HEM
342; 1.87A {Mus musculus} PDB: 1dd7_A* 2oro_A* 2orq_A*
2orr_A* 2ors_A* 2orp_A* 1nos_A* 1noc_A* 2nos_A* 1df1_A*
1nod_A* 2nod_A* 3nod_A* 3nw2_A* 2bhj_A* 1dwv_A* 1dww_A*
1dwx_A* 1n2n_A* 1qw4_A* ...
Length = 389
Score = 25.2 bits (55), Expect = 8.9
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 31 EYFSENSTNINEEQSQRLLDTSEEIERTG------KHLETGYRIA 69
+Y+ EE RL ++EIE TG L ++A
Sbjct: 30 QYYGSFKEAKIEEHLARLEAVTKEIETTGTYQLTLDELIFATKMA 74
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta
isoform; transferase, phosphoprotein, isoform-specific
inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A*
2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A*
2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Length = 940
Score = 25.6 bits (55), Expect = 8.9
Identities = 8/76 (10%), Positives = 24/76 (31%)
Query: 35 ENSTNINEEQSQRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTR 94
E S R+ + + + + E + + T+ + ++ ++ T+ R
Sbjct: 68 EPSARGWRAGLLRVSNRALLVNVKFEGSEESFTFQVSTKDMPLALMACALRKKATVFRQP 127
Query: 95 TRHSHTDFINLACGSM 110
++ G
Sbjct: 128 LVEQPEEYALQVNGRH 143
>1d0c_A Bovine endothelial nitric oxide synthase heme DOM; alpha-beta fold,
oxidoreductase; HET: HEM INE; 1.65A {Bos taurus} SCOP:
d.174.1.1 PDB: 1d0o_A* 1d1v_A* 1d1w_A* 1d1x_A* 1d1y_A*
1dm6_A* 1dm7_A* 1dm8_A* 1dmi_A* 1dmj_A* 1dmk_A* 1ed4_A*
1ed5_A* 1ed6_A* 1foi_A* 1foj_A* 1fol_A* 1foo_A* 1fop_A*
1nse_A* ...
Length = 444
Score = 25.3 bits (55), Expect = 10.0
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 31 EYFSENSTNINEEQSQRLLDTSEEIERTG------KHLETGYRIA 69
+Y+S + ++ +RL + E+ TG L G + A
Sbjct: 97 QYYSSIKRSGSQAHEERLQEVEAEVASTGTYHLRESELVFGAKQA 141
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.409
Gapped
Lambda K H
0.267 0.0483 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,037,177
Number of extensions: 103258
Number of successful extensions: 295
Number of sequences better than 10.0: 1
Number of HSP's gapped: 294
Number of HSP's successfully gapped: 39
Length of query: 138
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 54
Effective length of database: 4,356,429
Effective search space: 235247166
Effective search space used: 235247166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.4 bits)