RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1102
(138 letters)
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus
carota) [TaxId: 4039]}
Length = 319
Score = 28.0 bits (62), Expect = 0.35
Identities = 15/70 (21%), Positives = 23/70 (32%)
Query: 57 RTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGSMICQTVW 116
RT + TG I +D+ S L R +S T + + ++I W
Sbjct: 190 RTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINPAGW 249
Query: 117 TWWGGAPPQS 126
W G
Sbjct: 250 FPWDGNFALD 259
>d1xova2 c.56.5.6 (A:1-180) Endolysin Ply, catalytic domain
{Bacteriophage Psa [TaxId: 171618]}
Length = 180
Score = 27.3 bits (60), Expect = 0.60
Identities = 9/41 (21%), Positives = 15/41 (36%)
Query: 65 GYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDFINL 105
E EK+ +L+ + ++ R S T NL
Sbjct: 20 ILSEIKEAEKVLNAASDELKREGHNVKTFIDRTSTTQSANL 60
>d1wc9a_ d.278.1.2 (A:) Trafficking protein particle complex subunit
3, Bet3 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Length = 161
Score = 27.0 bits (60), Expect = 0.66
Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 17/86 (19%)
Query: 46 QRLLDTSEEIERTGKHLET-GYRIAIETEKIATDVLKDLESQRETLQRTRTRHSHTDFIN 104
+L E E K L+ GY I + ++ D L R DF
Sbjct: 17 TQLCKDYENDEDVNKQLDRMGYNIGV---RLIEDFLARSNVGRCH-----------DFRE 62
Query: 105 LACGSMICQTVWTWWGGAPPQSLNWN 130
A +I + + + G P NW+
Sbjct: 63 TA--DVIAKVAFKMYLGITPSITNWS 86
>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide
transformylase PurT, N-domain {Escherichia coli [TaxId:
562]}
Length = 111
Score = 25.6 bits (56), Expect = 1.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 61 HLETGYRIAIETEKIATDVLKDLESQ 86
LE + I E E IATD+L LE +
Sbjct: 71 ELEKPHYIVPEIEAIATDMLIQLEEE 96
>d1om4a_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 418
Score = 26.2 bits (58), Expect = 1.5
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 31 EYFSENSTNINEEQSQRLLDTSEEIERTG 59
+Y+S ++ RL + ++EIE T
Sbjct: 66 QYYSSIKRFGSKAHMDRLEEVNKEIESTS 94
>d2gf4a1 a.8.10.1 (A:1-89) Nypothetical protein Vng1086c
{Halobacterium salinarium [TaxId: 2242]}
Length = 89
Score = 25.1 bits (55), Expect = 1.5
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 23 FLLSEYHVEYFSENSTNINEEQSQRLLDTSEE 54
FLL SE+ + S+R+ + +++
Sbjct: 56 FLLGNALAAAMSEDEFSSAGRISKRMEELADD 87
>d1q2oa_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase
domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 416
Score = 25.9 bits (57), Expect = 2.0
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 31 EYFSENSTNINEEQSQRLLDTSEEIERTG 59
+Y+S + ++ +RL + E+ TG
Sbjct: 69 QYYSSIKRSGSQAHEERLQEVEAEVASTG 97
>d3e7ma1 d.174.1.1 (A:77-497) Nitric oxide (NO) synthase oxygenase
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 421
Score = 25.9 bits (57), Expect = 2.1
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 31 EYFSENSTNINEEQSQRLLDTSEEIERTG 59
+Y+ EE RL ++EIE TG
Sbjct: 67 QYYGSFKEAKIEEHLARLEAVTKEIETTG 95
>d1x9ba_ a.10.2.1 (A:) Hypothetical membrane protein Ta0354,
soluble domain {Thermoplasma acidophilum [TaxId: 2303]}
Length = 53
Score = 23.9 bits (51), Expect = 2.2
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 40 INEEQSQRLLDTSEEIERTGKHLETGYRIAIETEK 74
IN + E+E L YRI ++ K
Sbjct: 13 INSPSKSVFVRNLNELEALAVRLGKSYRIQLDQAK 47
>g1n13.1 d.155.1.2 (A:,B:) Arginine decarboxylase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 159
Score = 25.1 bits (55), Expect = 2.4
Identities = 8/67 (11%), Positives = 22/67 (32%)
Query: 12 GTELALLISWCFLLSEYHVEYFSENSTNINEEQSQRLLDTSEEIERTGKHLETGYRIAIE 71
G ++ IS + E +++++++ + +I + E +I
Sbjct: 80 GETISAAISVAIPKDKSLCGLIMEYEGKCSKKEAEKTVREMAKIGFEMRGWELDRIESIA 139
Query: 72 TEKIATD 78
E
Sbjct: 140 VEHTVEK 146
>d2b4va2 d.218.1.10 (A:30-288) RNA editing terminal uridyl
transferase 2, TUTase 2, RET2 {Trypanosoma brucei
[TaxId: 5691]}
Length = 259
Score = 24.9 bits (54), Expect = 3.9
Identities = 15/103 (14%), Positives = 31/103 (30%), Gaps = 19/103 (18%)
Query: 42 EEQSQRLLDTSEEIERTGKHLETGY-----------RIAIETEKIATDVLKDLESQRETL 90
E Q++R ++++ K Y R + + A D ++ L
Sbjct: 83 EVQAKR----TDKLRTVIKRYVPHYLRNNLLGLTEARTPVVKLRFANDEKVA-RARYTPL 137
Query: 91 QRTRTRHSHT---DFINLACGSMICQTVWTWWGGAPPQSLNWN 130
R + T D N G + + G + + +
Sbjct: 138 SEEEDRKARTALLDVRNQCVGDNDVEYIAEKMGRDNVEGIRVD 180
>d1m7va_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase
domain {Bacillus subtilis [TaxId: 1423]}
Length = 363
Score = 24.7 bits (54), Expect = 5.0
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Query: 25 LSEYHVEYFSENSTNINEEQSQRLLDTSEEIERTGKHLET 64
++E + E EE RL EI+RTG ++ T
Sbjct: 15 IAECYQEL------GKEEEVKDRLDSIKSEIDRTGSYVHT 48
>d1ykga1 c.23.5.2 (A:63-208) Sulfite reductase alpha-component CysJ
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 146
Score = 23.9 bits (51), Expect = 5.8
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Query: 72 TEKIATDVLKDLESQRETLQRTRTRHSHTDFINLACGSMICQTVWTWWGGAPPQSLNW 129
++A + DL + + L F +A ++ T G PP+
Sbjct: 12 ARRVAEALRDDLLAAK--LNVKLVNAGDYKFKQIASEKLLIVVTSTQGEGEPPEEAVA 67
>d1q06a_ a.6.1.3 (A:) Transcriptional regulator CueR {Escherichia
coli [TaxId: 562]}
Length = 127
Score = 23.9 bits (51), Expect = 6.1
Identities = 8/51 (15%), Positives = 20/51 (39%)
Query: 46 QRLLDTSEEIERTGKHLETGYRIAIETEKIATDVLKDLESQRETLQRTRTR 96
+++ EE R + + ++ + + ++E E LQ R +
Sbjct: 54 RQVGFNLEESGELVNLFNDPQRHSADVKRRTLEKVAEIERHIEELQSMRDQ 104
>d1d8ia_ d.63.1.1 (A:) mRNA triphosphatase CET1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 24.0 bits (52), Expect = 6.8
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 66 YRIAIETEKI--ATDVLKDLESQRETLQRTRTRHS--HTDFI 103
+I++ E D + +SQ +RT+ R S H D
Sbjct: 188 VKISLNLELPVPDNDPPEKYKSQSPISERTKDRVSYIHNDSC 229
>d2j44a1 b.3.1.3 (A:110-223) Pullulanase PulA {Streptococcus
pneumoniae [TaxId: 1313]}
Length = 114
Score = 23.7 bits (51), Expect = 7.3
Identities = 5/16 (31%), Positives = 6/16 (37%)
Query: 115 VWTWWGGAPPQSLNWN 130
+W W P S W
Sbjct: 25 LWYWGDVKNPSSAQWP 40
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.409
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 508,081
Number of extensions: 19988
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 23
Length of query: 138
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 62
Effective length of database: 1,364,116
Effective search space: 84575192
Effective search space used: 84575192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.4 bits)