BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11022
(492 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/281 (21%), Positives = 127/281 (45%), Gaps = 28/281 (9%)
Query: 57 GNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMC 116
GN +I+++ L+ N +I A ADL+V +V+P A +++ G +C
Sbjct: 28 GNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRG---TWLWGSFLC 84
Query: 117 HVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTT 176
+ L +LC ++ TL +IA++ Y+ + P + +++ + + +W +S L++
Sbjct: 85 ELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSF 144
Query: 177 LQFIYKVGPDYCSKKVSYMELYQ-------------GIIGSLF-FFIPIIITCILYMKIT 222
L + D + ++ YQ I S+ F+IP++I + +++
Sbjct: 145 LPIMMHWWRD---EDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVY 201
Query: 223 YKV-----RLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQI 277
+ ++ R + V+ ++ + T +F + W+PF +V V F +
Sbjct: 202 REAKEQIRKIDRASKRKTSRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDL 261
Query: 278 TPSFYYLA--WLALSKSCINSVLYCISNRHFRNAYINLFHY 316
P + ++A WL + S +N ++YC S FR A+ L +
Sbjct: 262 VPDWLFVAFNWLGYANSAMNPIIYCRSP-DFRKAFKRLLAF 301
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 379 NTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLA 438
N +I A ADL+V +V+P A +++ G +C + L +LC ++ TL
Sbjct: 47 NLFITSLACADLVVGLLVVPFGATLVVRG---TWLWGSFLCELWTSLDVLCVTASIETLC 103
Query: 439 MIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTL 480
+IA++ Y+ + P + +++ + + +W +S L++ L
Sbjct: 104 VIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFL 145
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/279 (21%), Positives = 127/279 (45%), Gaps = 26/279 (9%)
Query: 57 GNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMC 116
GN +I+++ L+ N +I A ADL+V +V+P A +++ G +C
Sbjct: 28 GNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRG---TWLWGSFLC 84
Query: 117 HVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTT 176
+ L +LC ++ TL +IA++ Y+ + P + +++ + + +W +S L++
Sbjct: 85 ELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSF 144
Query: 177 LQFIYKVGPDYCSKKVSYMELYQ-------------GIIGSLF-FFIPIIITCILYMKIT 222
L + D + ++ YQ I S+ F+IP++I + +++
Sbjct: 145 LPIMMHWWRD---EDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVY 201
Query: 223 YKVRLARQN---PSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQITP 279
+ + + S + V+ ++ + T +F + W+PF +V V F + P
Sbjct: 202 REAKEQIRKIDRASKRKRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVP 261
Query: 280 SFYYLA--WLALSKSCINSVLYCISNRHFRNAYINLFHY 316
+ ++A WL + S +N ++YC S FR A+ L +
Sbjct: 262 DWLFVAFNWLGYANSAMNPIIYCRSP-DFRKAFKRLLAF 299
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 379 NTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLA 438
N +I A ADL+V +V+P A +++ G +C + L +LC ++ TL
Sbjct: 47 NLFITSLACADLVVGLLVVPFGATLVVRG---TWLWGSFLCELWTSLDVLCVTASIETLC 103
Query: 439 MIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTL 480
+IA++ Y+ + P + +++ + + +W +S L++ L
Sbjct: 104 VIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFL 145
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 97/223 (43%), Gaps = 23/223 (10%)
Query: 116 CHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLT 175
C++Q F L + +W+L ++A+E YV +C P + F ++H I+ V W++++
Sbjct: 111 CNLQGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFR-FGENHAIMGVAFTWVMALACA 169
Query: 176 TLQFI----YKVGPDYCSKKVSYMELYQGIIGSLF--------FFIPIIITCILYMKITY 223
+ Y CS + Y ++ F F IP+I+ Y ++ +
Sbjct: 170 APPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVF 229
Query: 224 KVR-LARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQ---ITP 279
V+ A Q + + M+ M I F++ W+P+ V + F HQ P
Sbjct: 230 TVKEAAAQQQESATTQKAEKEVTRMVIIM--VIAFLICWLPYAGV-AFYIFTHQGSCFGP 286
Query: 280 SFYYL-AWLALSKSCINSVLYCISNRHFRNAYINLFHYCCCKT 321
F + A+ A + + N V+Y + N+ FRN + CC K
Sbjct: 287 IFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTL--CCGKN 327
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 419 CHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSI 475
C++Q F L + +W+L ++A+E YV +C P + F ++H I+ V W++++
Sbjct: 111 CNLQGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFR-FGENHAIMGVAFTWVMAL 166
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 97/223 (43%), Gaps = 23/223 (10%)
Query: 116 CHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLT 175
C+++ F L + +W+L ++A+E YV +C P + F ++H I+ V W++++
Sbjct: 111 CNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFR-FGENHAIMGVAFTWVMALACA 169
Query: 176 TLQFI----YKVGPDYCSKKVSYMELYQGIIGSLF--------FFIPIIITCILYMKITY 223
+ Y CS + Y ++ F F IP+I+ Y ++ +
Sbjct: 170 APPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVF 229
Query: 224 KVR-LARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQ---ITP 279
V+ A Q + + M+ M I F++ W+P+ V + F HQ P
Sbjct: 230 TVKEAAAQQQESATTQKAEKEVTRMVIIM--VIAFLICWLPYAGV-AFYIFTHQGSDFGP 286
Query: 280 SFYYL-AWLALSKSCINSVLYCISNRHFRNAYINLFHYCCCKT 321
F + A+ A + + N V+Y + N+ FRN + CC K
Sbjct: 287 IFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTL--CCGKN 327
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 419 CHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSI 475
C+++ F L + +W+L ++A+E YV +C P + F ++H I+ V W++++
Sbjct: 111 CNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFR-FGENHAIMGVAFTWVMAL 166
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 97/223 (43%), Gaps = 23/223 (10%)
Query: 116 CHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLT 175
C+++ F L + +W+L ++A+E YV +C P + F ++H I+ V W++++
Sbjct: 110 CNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFR-FGENHAIMGVAFTWVMALACA 168
Query: 176 TLQFI----YKVGPDYCSKKVSYMELYQGIIGSLF--------FFIPIIITCILYMKITY 223
+ Y CS + Y ++ F F IP+I+ Y ++ +
Sbjct: 169 APPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVF 228
Query: 224 KVR-LARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQ---ITP 279
V+ A Q + + M+ M I F++ W+P+ V + F HQ P
Sbjct: 229 TVKEAAAQQQESATTQKAEKEVTRMVIIM--VIAFLICWLPYAGV-AFYIFTHQGSDFGP 285
Query: 280 SFYYL-AWLALSKSCINSVLYCISNRHFRNAYINLFHYCCCKT 321
F + A+ A + + N V+Y + N+ FRN + CC K
Sbjct: 286 IFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTL--CCGKN 326
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 419 CHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSI 475
C+++ F L + +W+L ++A+E YV +C P + F ++H I+ V W++++
Sbjct: 110 CNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFR-FGENHAIMGVAFTWVMAL 165
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 21/222 (9%)
Query: 116 CHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLT 175
C+++ F L + +W+L ++A+E YV +C P + F ++H I+ V W++++
Sbjct: 111 CNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFR-FGENHAIMGVAFTWVMALACA 169
Query: 176 TLQFI----YKVGPDYCSKKVSYMELYQGIIGSLF--------FFIPIIITCILYMKITY 223
+ Y CS + Y ++ F F IP+I+ Y ++ +
Sbjct: 170 APPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVF 229
Query: 224 KVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQ---ITPS 280
V+ A + +Y I F++ W+P+ V + F HQ P
Sbjct: 230 TVKEAAAQQQESATTQKAEKEVTRMVIIYV-IAFLICWLPYAGV-AFYIFTHQGSCFGPI 287
Query: 281 FYYL-AWLALSKSCINSVLYCISNRHFRNAYINLFHYCCCKT 321
F + A+ A + + N V+Y + N+ FRN + CC K
Sbjct: 288 FMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTL--CCGKN 327
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 419 CHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSI 475
C+++ F L + +W+L ++A+E YV +C P + F ++H I+ V W++++
Sbjct: 111 CNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFR-FGENHAIMGVAFTWVMAL 166
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 97/223 (43%), Gaps = 23/223 (10%)
Query: 116 CHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLT 175
C+++ F L + +W+L ++A+E YV +C P + F ++H I+ V W++++
Sbjct: 111 CNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFR-FGENHAIMGVAFTWVMALACA 169
Query: 176 TLQFI----YKVGPDYCSKKVSYMELYQGIIGSLF--------FFIPIIITCILYMKITY 223
+ Y CS + Y ++ F F IP+I+ Y ++ +
Sbjct: 170 APPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVF 229
Query: 224 KVR-LARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQ---ITP 279
V+ A Q + + M+ M I F++ W+P+ V + F HQ P
Sbjct: 230 TVKEAAAQQQESATTQKAEKEVTRMVIIM--VIAFLICWLPYAGV-AFYIFTHQGSCFGP 286
Query: 280 SFYYL-AWLALSKSCINSVLYCISNRHFRNAYINLFHYCCCKT 321
F + A+ A + + N V+Y + N+ FRN + CC K
Sbjct: 287 IFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTL--CCGKN 327
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 419 CHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSI 475
C+++ F L + +W+L ++A+E YV +C P + F ++H I+ V W++++
Sbjct: 111 CNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFR-FGENHAIMGVAFTWVMAL 166
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 97/223 (43%), Gaps = 23/223 (10%)
Query: 116 CHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLT 175
C+++ F L + +W+L ++A+E YV +C P + F ++H I+ V W++++
Sbjct: 110 CNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFR-FGENHAIMGVAFTWVMALACA 168
Query: 176 TLQFI----YKVGPDYCSKKVSYMELYQGIIGSLF--------FFIPIIITCILYMKITY 223
+ Y CS + Y ++ F F IP+I+ Y ++ +
Sbjct: 169 APPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVF 228
Query: 224 KVR-LARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQ---ITP 279
V+ A Q + + M+ M I F++ W+P+ V + F HQ P
Sbjct: 229 TVKEAAAQQQESATTQKAEKEVTRMVIIM--VIAFLICWLPYAGV-AFYIFTHQGSCFGP 285
Query: 280 SFYYL-AWLALSKSCINSVLYCISNRHFRNAYINLFHYCCCKT 321
F + A+ A + + N V+Y + N+ FRN + CC K
Sbjct: 286 IFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTL--CCGKN 326
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 419 CHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSI 475
C+++ F L + +W+L ++A+E YV +C P + F ++H I+ V W++++
Sbjct: 110 CNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFR-FGENHAIMGVAFTWVMAL 165
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 64/297 (21%), Positives = 126/297 (42%), Gaps = 29/297 (9%)
Query: 57 GNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMC 116
GN +I+++ + L+ N +I A ADL++ V+P A IL + C
Sbjct: 22 GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILT---KTWTFGNFWC 78
Query: 117 HVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTT 176
+ +LC ++ TL +IA++ Y + P + + +K+ + ++M+W+VS L +
Sbjct: 79 EFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSF 138
Query: 177 L------------QFIYKVGPDYCSKKVSYMELYQGIIGSLFFFIPIIITCILYMKITYK 224
L + I + C + + Y + F++P++I +Y ++ +
Sbjct: 139 LPIQMHWYRATHQEAINCYAEETCCDFFT-NQAYAIASSIVSFYVPLVIMVFVYSRVFQE 197
Query: 225 VRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQITPSFYY- 283
+ RQ + ++ + T F + W+PF IV V + + Y
Sbjct: 198 AK--RQLQKIDKFCLK--EHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYI 253
Query: 284 -LAWLALSKSCINSVLYCISNRHFRNAYINLFHYCCCKTTVTFSRRSRGDATRPSGD 339
L W+ S N ++YC S FR A+ L C + + S ++ G+ +G+
Sbjct: 254 LLNWIGYVNSGFNPLIYCRS-PDFRIAFQELL---CLRRS---SLKAYGNGYSSNGN 303
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Query: 379 NTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLA 438
N +I A ADL++ V+P A IL + C + +LC ++ TL
Sbjct: 41 NYFITSLACADLVMGLAVVPFGAAHILT---KTWTFGNFWCEFWTSIDVLCVTASIETLC 97
Query: 439 MIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFEKSIY 487
+IA++ Y + P + + +K+ + ++M+W+VS L + L + Y
Sbjct: 98 VIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWY 146
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 57 GNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMC 116
GN +I+++ + L+ N +I A ADL++ V+P A IL + C
Sbjct: 58 GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM---KMWTFGNFWC 114
Query: 117 HVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTT 176
+ +LC ++WTL +IA++ Y + P + + +K+ + ++M+W+VS L +
Sbjct: 115 EFWTSIDVLCVTASIWTLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSF 174
Query: 177 L 177
L
Sbjct: 175 L 175
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 379 NTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLA 438
N +I A ADL++ V+P A IL + C + +LC ++WTL
Sbjct: 77 NYFITSLACADLVMGLAVVPFGAAHILM---KMWTFGNFWCEFWTSIDVLCVTASIWTLC 133
Query: 439 MIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTL 480
+IA++ Y + P + + +K+ + ++M+W+VS L + L
Sbjct: 134 VIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFL 175
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 84/186 (45%), Gaps = 13/186 (6%)
Query: 57 GNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIP-VSAVMILAGIKQAEPIKEIM 115
GNG + +V+ E L+ N + A+ADLLV+ +V+P V + + G+ I
Sbjct: 55 GNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWN---FSRIC 111
Query: 116 CHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKS---HIILSVIMIWLVSI 172
C V L ++ ++W L I+++ Y + MP +S + L + +W+++
Sbjct: 112 CDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAF 171
Query: 173 LLTT---LQFIYKVGPDYCSKKVSYMELYQGIIGSLFFFIPIIITCILYMKITYKVRLAR 229
++ F P CS +Y ++ F++P +T ++Y +I ++ R
Sbjct: 172 AVSCPLLFGFNTTGDPTVCSISNPDFVIYSSVVS---FYLPFGVTVLVYARIYVVLKQRR 228
Query: 230 QNPSFK 235
+ F+
Sbjct: 229 RKNIFE 234
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 257 FIVLWIPFCI--VMSVASFRHQITPSFY-YLAWLALSKSCINSVLYCISNRHFRNAYINL 313
FIV W+PF + V++ ++P Y WL S +N V+Y N FR A++ +
Sbjct: 410 FIVCWLPFFLTHVLNTHCQTCHVSPELYSATTWLGYVNSALNPVIYTTFNIEFRKAFLKI 469
Query: 314 F 314
Sbjct: 470 L 470
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 374 IHITGNTYIAVEALADLLVSGVVIP-VSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLV 432
+ T N + A+ADLLV+ +V+P V + + G+ I C V L ++
Sbjct: 69 LQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWN---FSRICCDVFVTLDVMMCTA 125
Query: 433 TVWTLAMIAMENYVRLCMP 451
++W L I+++ Y + MP
Sbjct: 126 SIWNLCAISIDRYTAVVMP 144
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 88/191 (46%), Gaps = 17/191 (8%)
Query: 52 VLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPI 111
V+G VGN ++ ++ ++ N YI ALAD LV+ + S V ++ + P
Sbjct: 34 VVGLVGNSLVMFVIIRYTKMKTATNIYIFNLALADALVTTTMPFQSTVYLM----NSWPF 89
Query: 112 KEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVS 171
+++C + + +++TL M++++ Y+ +C P + F + + I IWL+S
Sbjct: 90 GDVLCKIVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPLKAKIINICIWLLS 149
Query: 172 -------ILLTTLQFIYKVGPDYCS-----KKVSYMELYQGIIGSLF-FFIPIIITCILY 218
I+L + V CS S+ +L+ I +F F IP++I + Y
Sbjct: 150 SSVGISAIVLGGTKVREDVDVIECSLQFPDDDYSWWDLFMKICVFIFAFVIPVLIIIVCY 209
Query: 219 MKITYKVRLAR 229
+ +++ R
Sbjct: 210 TLMILRLKSVR 220
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 379 NTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLA 438
N YI ALAD LV+ + S V ++ + P +++C + + +++TL
Sbjct: 58 NIYIFNLALADALVTTTMPFQSTVYLM----NSWPFGDVLCKIVLSIDYYNMFTSIFTLT 113
Query: 439 MIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVS 474
M++++ Y+ +C P + F + + I IWL+S
Sbjct: 114 MMSVDRYIAVCHPVKALDFRTPLKAKIINICIWLLS 149
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 57 GNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMC 116
GN +I+++ + L+ N +I A ADL++ V+P A IL + C
Sbjct: 199 GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILT---KTWTFGNFWC 255
Query: 117 HVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTT 176
+ +LC ++ TL +IA++ Y + P + + +K+ + ++M+W+VS L +
Sbjct: 256 EFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSF 315
Query: 177 L 177
L
Sbjct: 316 L 316
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 379 NTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLA 438
N +I A ADL++ V+P A IL + C + +LC ++ TL
Sbjct: 218 NYFITSLACADLVMGLAVVPFGAAHILT---KTWTFGNFWCEFWTSIDVLCVTASIETLC 274
Query: 439 MIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTL 480
+IA++ Y + P + + +K+ + ++M+W+VS L + L
Sbjct: 275 VIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFL 316
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 57 GNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMC 116
GN +I+++ + L+ N +I A ADL++ V+P A IL + C
Sbjct: 51 GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM---KMWTFGNFWC 107
Query: 117 HVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTT 176
+ +LC ++ TL +IA++ Y + P + + +K+ + ++M+W+VS L +
Sbjct: 108 EFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSF 167
Query: 177 L 177
L
Sbjct: 168 L 168
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 379 NTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLA 438
N +I A ADL++ V+P A IL + C + +LC ++ TL
Sbjct: 70 NYFITSLACADLVMGLAVVPFGAAHILM---KMWTFGNFWCEFWTSIDVLCVTASIETLC 126
Query: 439 MIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTL 480
+IA++ Y + P + + +K+ + ++M+W+VS L + L
Sbjct: 127 VIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFL 168
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 57 GNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMC 116
GN +I+++ + L+ N +I A ADL++ V+P A IL + C
Sbjct: 50 GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM---KMWTFGNFWC 106
Query: 117 HVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTT 176
+ +LC ++ TL +IA++ Y + P + + +K+ + ++M+W+VS L +
Sbjct: 107 EFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSF 166
Query: 177 L 177
L
Sbjct: 167 L 167
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Query: 379 NTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLA 438
N +I A ADL++ V+P A IL + C + +LC ++ TL
Sbjct: 69 NYFITSLACADLVMGLAVVPFGAAHILM---KMWTFGNFWCEFWTSIDVLCVTASIETLC 125
Query: 439 MIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFEKSIY 487
+IA++ Y + P + + +K+ + ++M+W+VS L + L + Y
Sbjct: 126 VIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWY 174
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 57 GNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMC 116
GN +I+++ + L+ N +I A ADL++ V+P A IL + C
Sbjct: 27 GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM---KMWTFGNFWC 83
Query: 117 HVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTT 176
+ +LC ++ TL +IA++ Y + P + + +K+ + ++M+W+VS L +
Sbjct: 84 EFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSF 143
Query: 177 L 177
L
Sbjct: 144 L 144
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 379 NTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLA 438
N +I A ADL++ V+P A IL + C + +LC ++ TL
Sbjct: 46 NYFITSLACADLVMGLAVVPFGAAHILM---KMWTFGNFWCEFWTSIDVLCVTASIETLC 102
Query: 439 MIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTL 480
+IA++ Y + P + + +K+ + ++M+W+VS L + L
Sbjct: 103 VIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFL 144
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 57 GNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMC 116
GN +I+++ + L+ N +I A ADL++ V+P A IL + C
Sbjct: 57 GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM---KMWTFGNFWC 113
Query: 117 HVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTT 176
+ +LC ++ TL +IA++ Y + P + + +K+ + ++M+W+VS L +
Sbjct: 114 EFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSF 173
Query: 177 L 177
L
Sbjct: 174 L 174
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 379 NTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLA 438
N +I A ADL++ V+P A IL + C + +LC ++ TL
Sbjct: 76 NYFITSLACADLVMGLAVVPFGAAHILM---KMWTFGNFWCEFWTSIDVLCVTASIETLC 132
Query: 439 MIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTL 480
+IA++ Y + P + + +K+ + ++M+W+VS L + L
Sbjct: 133 VIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFL 174
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 57 GNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMC 116
GN +I+++ + L+ N +I A ADL++ V+P A IL + C
Sbjct: 58 GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM---KMWTFGNFWC 114
Query: 117 HVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTT 176
+ +LC ++ TL +IA++ Y + P + + +K+ + ++M+W+VS L +
Sbjct: 115 EFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSF 174
Query: 177 L 177
L
Sbjct: 175 L 175
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 379 NTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLA 438
N +I A ADL++ V+P A IL + C + +LC ++ TL
Sbjct: 77 NYFITSLACADLVMGLAVVPFGAAHILM---KMWTFGNFWCEFWTSIDVLCVTASIETLC 133
Query: 439 MIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTL 480
+IA++ Y + P + + +K+ + ++M+W+VS L + L
Sbjct: 134 VIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFL 175
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 57 GNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMC 116
GN +I+++ + L+ N +I A ADL++ V+P A IL + C
Sbjct: 26 GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAACILM---KMWTFGNFWC 82
Query: 117 HVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTT 176
+ +LC ++ TL +IA++ Y + P + + +K+ + ++M+W+VS L +
Sbjct: 83 EFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSF 142
Query: 177 L 177
L
Sbjct: 143 L 143
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 379 NTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLA 438
N +I A ADL++ V+P A IL + C + +LC ++ TL
Sbjct: 45 NYFITSLACADLVMGLAVVPFGAACILM---KMWTFGNFWCEFWTSIDVLCVTASIETLC 101
Query: 439 MIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTL 480
+IA++ Y + P + + +K+ + ++M+W+VS L + L
Sbjct: 102 VIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFL 143
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 85/190 (44%), Gaps = 18/190 (9%)
Query: 45 LITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAG 104
L+T GL++L ++ +V E L GN YI ++ADL+V VV+P++ + +L
Sbjct: 20 LVTVGLNLL-------VLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMS 72
Query: 105 IKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSV 164
+ +C + + S +++++ ++ ++ Y + P + +K+ ++
Sbjct: 73 ---KWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATI 129
Query: 165 IMIWLVSIL-----LTTLQFIYKVG---PDYCSKKVSYMELYQGIIGSLFFFIPIIITCI 216
+ W +S L L F+ + D C + ++ + + F++P ++
Sbjct: 130 LGAWFLSFLWVIPILGWNHFMQQTSVRREDKCETDFYDVTWFKVMTAIINFYLPTLLMLW 189
Query: 217 LYMKITYKVR 226
Y KI VR
Sbjct: 190 FYAKIYKAVR 199
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/103 (20%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Query: 374 IHITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVT 433
+H GN YI ++ADL+V VV+P++ + +L + +C + + S +
Sbjct: 39 LHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMS---KWSLGRPLCLFWLSMDYVASTAS 95
Query: 434 VWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSIL 476
++++ ++ ++ Y + P + +K+ +++ W +S L
Sbjct: 96 IFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLSFL 138
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 257 FIVLWIPFCIVMSVASFRHQITPSFYYL--AWLALSKSCINSVLYCISNRHFRNAYINLF 314
FI+ WIP+ I V +F ++ WL S +N ++Y + N +F+ + +
Sbjct: 382 FILCWIPYFIFFMVIAFCKNCCNEHLHMFTIWLGYINSTLNPLIYPLCNENFKKTFKRIL 441
Query: 315 H 315
H
Sbjct: 442 H 442
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
Complex With Neurotensin (8-13)
Length = 510
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 8/161 (4%)
Query: 21 TSATPMDTVDP-STLPYDWNRVARLLITT---GLSVLGSVGNGYMISSVMIEDHLRRRGN 76
TS + DT P S L + + +++L+T L V+G+VGN + ++ + L+ +
Sbjct: 9 TSTSESDTAGPNSDLDVNTDIYSKVLVTAIYLALFVVGTVGNSVTLFTLARKKSLQSLQS 68
Query: 77 T---YIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWT 133
T ++ AL+DLL+ + +PV + + + C +FL C+ T
Sbjct: 69 TVHYHLGSLALSDLLILLLAMPVELYNFI-WVHHPWAFGDAGCRGYYFLRDACTYATALN 127
Query: 134 LAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILL 174
+A +++ Y+ +C P + T S+S + IWL S LL
Sbjct: 128 VASLSVARYLAICHPFKAKTLMSRSRTKKFISAIWLASALL 168
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 416 EIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSI 475
+ C +FL C+ T +A +++ Y+ +C P + T S+S + IWL S
Sbjct: 107 DAGCRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIWLASA 166
Query: 476 LLTT-LQFEKSIYSRS 490
LL + F + +RS
Sbjct: 167 LLAIPMLFTMGLQNRS 182
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 60/124 (48%), Gaps = 4/124 (3%)
Query: 48 TGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQ 107
+ + +G +GN ++ ++ L+ N YI ALAD L + + SA ++ +
Sbjct: 22 SAVCAVGLLGNVLVMFGIVRYTKLKTATNIYIFNLALADALATSTLPFQSAKYLM----E 77
Query: 108 AEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMI 167
P E++C + +++TL M++++ Y+ +C P + F + + L I I
Sbjct: 78 TWPFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPAKAKLINICI 137
Query: 168 WLVS 171
W+++
Sbjct: 138 WVLA 141
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 379 NTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLA 438
N YI ALAD L + + SA ++ + P E++C + +++TL
Sbjct: 50 NIYIFNLALADALATSTLPFQSAKYLM----ETWPFGELLCKAVLSIDYYNMFTSIFTLT 105
Query: 439 MIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVS 474
M++++ Y+ +C P + F + + L I IW+++
Sbjct: 106 MMSVDRYIAVCHPVKALDFRTPAKAKLINICIWVLA 141
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 47/226 (20%), Positives = 91/226 (40%), Gaps = 30/226 (13%)
Query: 116 CHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLT 175
C F + +++++ +A + Y+ + P + + + +++ VI W++++LL
Sbjct: 105 CKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPLQPRLSATATKVVICVI--WVLALLLA 162
Query: 176 TLQFIYKVGPDYCSKKVS-----------YMELYQGIIGSLFFFIPIIITCILY--MKIT 222
Q Y S+ V Y ++Y + L +F+P+++ Y + IT
Sbjct: 163 FPQGYYSTTETMPSRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVGIT 222
Query: 223 YKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQITPSFY 282
+ S + ++ + F + W+PF I + I P Y
Sbjct: 223 LWASEIPGDSSDRYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLP----YINPDLY 278
Query: 283 --------YLA--WLALSKSCINSVLYCISNRHFRNAYINLFHYCC 318
YLA WLA+S + N ++YC N FR + + F CC
Sbjct: 279 LKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGFKHAFR-CC 323
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 97/261 (37%), Gaps = 47/261 (18%)
Query: 116 CHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLT 175
C V F+ + +++ T+AMI+++ Y + P S + +I +WL S+L
Sbjct: 108 CKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVL-- 165
Query: 176 TLQFIYKVGP------------------DYCSKKVSYME--LYQGIIGSLFFFIPIIITC 215
+ +GP DY S+ + L I+G FF PI+I
Sbjct: 166 -----WAIGPIFGWGAYTLEGVLCNCSFDYISRDSTTRSNILCMFILG---FFGPILIIF 217
Query: 216 ILYMKITYKVR---------LARQNPSFKPPVIFGWDYSLMLTNMYSYIM--FIVLWIPF 264
Y I V R N G + + L + I+ F++ W P+
Sbjct: 218 FCYFNIVMSVSNHEKEMAAMAKRLNAKELRKAQAGANAEMRLAKISIVIVSQFLLSWSPY 277
Query: 265 CIVMSVASFR--HQITPSFYYLAWLALSKSCI-NSVLYCISNRHFRNAYINLFHY---CC 318
+V +A F +TP L + S I N ++Y +S+ FR A F + CC
Sbjct: 278 AVVALLAQFGPLEWVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCC 337
Query: 319 CKTTVTFSRRSRGDATRPSGD 339
+ P+G+
Sbjct: 338 QFDDKETEDDKDAETEIPAGE 358
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 29/58 (50%)
Query: 419 CHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSIL 476
C V F+ + +++ T+AMI+++ Y + P S + +I +WL S+L
Sbjct: 108 CKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVL 165
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 97/261 (37%), Gaps = 47/261 (18%)
Query: 116 CHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLT 175
C V F+ + +++ T+AMI+++ Y + P S + +I +WL S+L
Sbjct: 107 CKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVL-- 164
Query: 176 TLQFIYKVGP------------------DYCSKKVSYME--LYQGIIGSLFFFIPIIITC 215
+ +GP DY S+ + L I+G FF PI+I
Sbjct: 165 -----WAIGPIFGWGAYTLEGVLCNCSFDYISRDSTTRSNILCMFILG---FFGPILIIF 216
Query: 216 ILYMKITYKVR---------LARQNPSFKPPVIFGWDYSLMLTNMYSYIM--FIVLWIPF 264
Y I V R N G + + L + I+ F++ W P+
Sbjct: 217 FCYFNIVMSVSNHEKEMAAMAKRLNAKELRKAQAGANAEMRLAKISIVIVSQFLLSWSPY 276
Query: 265 CIVMSVASFR--HQITPSFYYLAWLALSKSCI-NSVLYCISNRHFRNAYINLFHY---CC 318
+V +A F +TP L + S I N ++Y +S+ FR A F + CC
Sbjct: 277 AVVALLAQFGPLEWVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCC 336
Query: 319 CKTTVTFSRRSRGDATRPSGD 339
+ P+G+
Sbjct: 337 QFDDKETEDDKDAETEIPAGE 357
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 84/191 (43%), Gaps = 18/191 (9%)
Query: 52 VLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPI 111
V+G GN ++ ++ ++ N YI ALAD L + +P +V L G P
Sbjct: 29 VVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATST-LPFQSVNYLMG---TWPF 84
Query: 112 KEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVS 171
I+C + + +++TL ++++ Y+ +C P + F + + + + W++S
Sbjct: 85 GNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILS 144
Query: 172 -------ILLTTLQFIYKVGPDYCSKKVS----YMELYQGIIGSLFFFI-PIIITCILYM 219
+ + T + Y+ G C+ S Y E I +F FI P++I + Y
Sbjct: 145 SAIGLPVMFMATTK--YRQGSIDCTLTFSHPTWYWENLLKICVFIFAFIMPVLIITVCYG 202
Query: 220 KITYKVRLARQ 230
+ +++ R
Sbjct: 203 LMILRLKSVRN 213
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 379 NTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLA 438
N YI ALAD L + +P +V L G P I+C + + +++TL
Sbjct: 53 NIYIFNLALADALATST-LPFQSVNYLMG---TWPFGNILCKIVISIDYYNMFTSIFTLC 108
Query: 439 MIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVS 474
++++ Y+ +C P + F + + + + W++S
Sbjct: 109 TMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILS 144
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 255 IMFIVLWIPFCIVMSVASFRHQITPSFYYLA--WLALSKSCINSVLYCISNRHFRNAYIN 312
+ FI+ W P+ I++ V +F P Y+ WL S +N V Y + N+ FR +
Sbjct: 381 LAFIITWTPYNIMVLVNTFCDSCIPKTYWNLGYWLCYINSTVNPVCYALCNKTFRTTFKT 440
Query: 313 LFHYCCC 319
L C C
Sbjct: 441 LL-LCQC 446
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 93/202 (46%), Gaps = 18/202 (8%)
Query: 33 TLPYDWNRVARLLITTG-LSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSG 91
T PY V +++ G LS++ +GN ++ S+ + HL+ N ++ A ADL++
Sbjct: 15 TSPYKTFEVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGV 74
Query: 92 VVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPEC 151
+ + + + G P+ ++C + L + S +V L +I+ + Y + P
Sbjct: 75 FSMNLYTLYTVIGY---WPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKP--- 128
Query: 152 YTFFSKSHIILSVIMI---WLVSILL---TTLQFIYKVGPDYCSKKVSYMELYQG---II 202
T+ K ++ +MI W++S +L L + + VG Y++ +
Sbjct: 129 LTYPVKRTTKMAGMMIAAAWVLSFILWAPAILFWQFIVGVRTVEDGECYIQFFSNAAVTF 188
Query: 203 GSLF--FFIPIIITCILYMKIT 222
G+ F++P+II +LY I+
Sbjct: 189 GTAIAAFYLPVIIMTVLYWHIS 210
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 61/301 (20%), Positives = 122/301 (40%), Gaps = 49/301 (16%)
Query: 46 ITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGI 105
+ ++VL +GN + +V + +L+ N ++ A AD+LV + IP A+ I G
Sbjct: 12 VELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPF-AIAISTGF 70
Query: 106 KQAEPIKEIMCHVQWFLT---LLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIIL 162
A CH F+ L+ + ++++L IA++ Y+ + +P + +
Sbjct: 71 CAA-------CHGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKG 123
Query: 163 SVIMIWLVS--ILLTTLQFIYKVGPDYCSK----KVSYMELYQGIIGSLF---------- 206
+ + W++S I LT + +G + C + K +G + LF
Sbjct: 124 IIAICWVLSFAIGLTPM-----LGWNNCGQPKEGKAHSQGCGEGQVACLFEDVVPMNYMV 178
Query: 207 ---FFIPIIITCILYMKITYKVRLA--RQNPSFKPPVIFGWDYSLMLTNMYSYI------ 255
FF +++ +L + + ++ LA RQ + + G L
Sbjct: 179 YFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERARSTLQKEVHAAKSLAII 238
Query: 256 --MFIVLWIPFCIVMSVASFRHQITPSFYYLAWLAL----SKSCINSVLYCISNRHFRNA 309
+F + W+P I+ F + + +L +LA+ + S +N +Y R FR
Sbjct: 239 VGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQT 298
Query: 310 Y 310
+
Sbjct: 299 F 299
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 11/106 (10%)
Query: 46 ITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGI 105
+ ++VL +GN + +V + +L+ N ++ A AD+LV + IP A+ I G
Sbjct: 12 VELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADILVGVLAIPF-AITISTGF 70
Query: 106 KQAEPIKEIMCHVQWFLT---LLCSLVTVWTLAMIAMENYVRLCMP 148
A CH F+ L+ + ++++L IA++ Y+ + +P
Sbjct: 71 CAA-------CHGCLFIACFVLVLAQSSIFSLLAIAIDRYIAIAIP 109
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 11/131 (8%)
Query: 54 GSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKE 113
G VGNG +I + + LR + Y ++ADLL + +P AV +A
Sbjct: 62 GIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFV-ITLPFWAVDAVANWY----FGN 116
Query: 114 IMC---HVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLV 170
+C HV + + L S VW LA I+++ Y+ + + + +W+
Sbjct: 117 FLCKAVHVIYTVNLYSS---VWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIP 173
Query: 171 SILLTTLQFIY 181
++LLT FI+
Sbjct: 174 ALLLTIPDFIF 184
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 60/297 (20%), Positives = 119/297 (40%), Gaps = 41/297 (13%)
Query: 46 ITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGI 105
+ ++VL +GN + +V + +L+ N ++ A AD+ V + IP A+ I G
Sbjct: 12 VELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPF-AITISTGF 70
Query: 106 KQAEPIKEIMCHVQWFLT---LLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIIL 162
A CH F+ L+ + ++++L IA++ Y+ + +P + +
Sbjct: 71 CAA-------CHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKG 123
Query: 163 SVIMIWLVS--ILLTTLQFIYKVGPDYCSKKVSYMELYQGIIGSLF-------------F 207
+ + W++S I LT + G K+ S +G + LF F
Sbjct: 124 IIAICWVLSFAIGLTPMLGWNNCGQPKEGKQHS-QGCGEGQVACLFEDVVPMNYMVYFNF 182
Query: 208 FIPIIITCILYMKITYKVRLA--RQNPSFKPPVIFGWDYSLMLTNMYSYI--------MF 257
F +++ +L + + ++ LA RQ + + G L +F
Sbjct: 183 FACVLVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIVGLF 242
Query: 258 IVLWIPFCIVMSVASFRHQITPSFYYLAWLAL----SKSCINSVLYCISNRHFRNAY 310
+ W+P I+ F + + +L +LA+ + S +N +Y R FR +
Sbjct: 243 ALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTF 299
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 11/131 (8%)
Query: 54 GSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKE 113
G VGNG +I + + LR + Y ++ADLL + +P AV +A
Sbjct: 62 GIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFV-ITLPFWAVDAVANWY----FGN 116
Query: 114 IMC---HVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLV 170
+C HV + + L S VW LA I+++ Y+ + + + +W+
Sbjct: 117 FLCKAVHVIYTVNLYSS---VWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIP 173
Query: 171 SILLTTLQFIY 181
++LLT FI+
Sbjct: 174 ALLLTIPDFIF 184
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 11/131 (8%)
Query: 54 GSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKE 113
G VGNG +I + + LR + Y ++ADLL + +P AV +A
Sbjct: 62 GIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFV-ITLPFWAVDAVANWY----FGN 116
Query: 114 IMC---HVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLV 170
+C HV + + L S VW LA I+++ Y+ + + + +W+
Sbjct: 117 FLCKAVHVIYTVNLYSS---VWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIP 173
Query: 171 SILLTTLQFIY 181
++LLT FI+
Sbjct: 174 ALLLTIPDFIF 184
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.139 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,461,070
Number of Sequences: 62578
Number of extensions: 498487
Number of successful extensions: 1337
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1252
Number of HSP's gapped (non-prelim): 81
length of query: 492
length of database: 14,973,337
effective HSP length: 103
effective length of query: 389
effective length of database: 8,527,803
effective search space: 3317315367
effective search space used: 3317315367
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (25.0 bits)