Query psy11022
Match_columns 492
No_of_seqs 304 out of 3199
Neff 10.0
Searched_HMMs 46136
Date Fri Aug 16 16:10:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11022.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11022hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4219|consensus 100.0 6E-43 1.3E-47 322.5 21.4 281 33-318 28-337 (423)
2 PHA03234 DNA packaging protein 100.0 4.1E-40 8.9E-45 317.6 21.5 263 38-317 30-317 (338)
3 PHA03235 DNA packaging protein 100.0 2.5E-38 5.4E-43 311.8 25.1 265 37-317 29-324 (409)
4 KOG4220|consensus 100.0 1.7E-38 3.7E-43 291.9 13.8 280 33-315 23-486 (503)
5 PHA02638 CC chemokine receptor 100.0 6.7E-36 1.5E-40 296.0 24.4 264 39-318 97-399 (417)
6 PHA02834 chemokine receptor-li 100.0 2.5E-36 5.5E-41 291.5 20.3 260 39-315 27-308 (323)
7 PHA03087 G protein-coupled che 100.0 1.4E-33 3E-38 275.1 26.1 265 37-315 37-322 (335)
8 PF00001 7tm_1: 7 transmembran 100.0 5.5E-31 1.2E-35 246.6 16.9 240 57-299 1-257 (257)
9 KOG2087|consensus 99.9 7.3E-24 1.6E-28 194.5 11.3 270 42-318 26-308 (363)
10 PF10320 7TM_GPCR_Srsx: Serpen 99.9 1.9E-23 4.1E-28 194.1 11.4 250 52-314 2-257 (257)
11 PF10324 7TM_GPCR_Srw: Serpent 99.8 1.7E-19 3.6E-24 174.5 17.9 266 49-315 5-316 (318)
12 KOG4219|consensus 99.8 1.8E-19 3.8E-24 167.5 4.0 111 368-483 60-170 (423)
13 PF10328 7TM_GPCR_Srx: Serpent 99.8 9.5E-18 2.1E-22 158.3 15.8 260 49-314 2-273 (274)
14 KOG4220|consensus 99.7 7E-18 1.5E-22 156.4 6.2 112 369-483 56-167 (503)
15 PF10323 7TM_GPCR_Srv: Serpent 99.7 8.4E-17 1.8E-21 151.6 10.7 262 53-315 7-282 (283)
16 PHA03234 DNA packaging protein 99.6 9.3E-16 2E-20 148.4 9.1 106 373-485 64-169 (338)
17 PF05296 TAS2R: Mammalian tast 99.6 2.2E-13 4.7E-18 129.4 21.0 273 39-315 5-300 (303)
18 PF05462 Dicty_CAR: Slime mold 99.5 4.2E-13 9.2E-18 125.9 19.0 254 42-314 8-268 (303)
19 PF10321 7TM_GPCR_Srt: Serpent 99.5 3.6E-13 7.9E-18 127.1 18.1 271 37-315 29-306 (313)
20 PHA02834 chemokine receptor-li 99.5 1.3E-14 2.9E-19 140.2 8.6 103 375-483 59-161 (323)
21 PF00001 7tm_1: 7 transmembran 99.5 1.4E-14 3.1E-19 135.2 6.7 110 372-484 13-122 (257)
22 PHA02638 CC chemokine receptor 99.5 2.4E-14 5.2E-19 142.4 7.7 107 372-483 126-232 (417)
23 PHA03235 DNA packaging protein 99.4 1.2E-13 2.7E-18 136.6 7.2 102 375-482 66-167 (409)
24 PHA03087 G protein-coupled che 99.4 3.4E-13 7.4E-18 131.5 8.8 108 373-484 69-176 (335)
25 PF03402 V1R: Vomeronasal orga 99.2 1.6E-10 3.4E-15 105.6 11.2 234 70-310 6-263 (265)
26 KOG2087|consensus 99.1 1.2E-10 2.6E-15 108.0 8.4 112 376-487 57-172 (363)
27 PF10317 7TM_GPCR_Srd: Serpent 99.1 8.6E-09 1.9E-13 98.1 17.7 259 45-312 3-292 (292)
28 PF11710 Git3: G protein-coupl 98.9 4.3E-08 9.3E-13 87.0 12.8 158 69-230 30-199 (201)
29 PF10327 7TM_GPCR_Sri: Serpent 98.8 5E-07 1.1E-11 86.1 19.9 265 41-309 9-302 (303)
30 PF10292 7TM_GPCR_Srab: Serpen 98.8 1.8E-06 3.9E-11 83.4 21.9 273 40-314 16-304 (324)
31 PF10326 7TM_GPCR_Str: Serpent 98.7 2.2E-09 4.8E-14 103.3 0.3 260 48-311 6-307 (307)
32 PF02101 Ocular_alb: Ocular al 98.7 4.4E-06 9.6E-11 78.4 21.8 220 43-273 29-269 (405)
33 KOG4193|consensus 98.6 1.1E-06 2.4E-11 90.1 17.2 240 52-315 331-580 (610)
34 PF10318 7TM_GPCR_Srh: Serpent 98.6 3E-06 6.6E-11 81.3 19.3 269 43-315 6-301 (302)
35 PF10320 7TM_GPCR_Srsx: Serpen 98.6 1.3E-07 2.8E-12 88.2 8.8 107 370-481 17-123 (257)
36 PF02118 Srg: Srg family chemo 98.6 4.9E-07 1.1E-11 85.6 12.1 252 50-309 7-274 (275)
37 KOG4564|consensus 98.4 1.4E-05 3.1E-10 78.5 17.4 259 45-319 149-422 (473)
38 PF10319 7TM_GPCR_Srj: Serpent 98.4 7.4E-05 1.6E-09 69.5 19.7 263 46-309 10-309 (310)
39 PF10328 7TM_GPCR_Srx: Serpent 98.4 6.5E-07 1.4E-11 84.6 6.3 109 372-483 22-131 (274)
40 PF10316 7TM_GPCR_Srbc: Serpen 98.3 4.6E-05 9.9E-10 70.8 18.0 128 40-167 5-132 (273)
41 PF04789 DUF621: Protein of un 98.2 6.1E-05 1.3E-09 67.6 15.4 231 68-312 41-294 (305)
42 PF00002 7tm_2: 7 transmembran 98.1 1.5E-06 3.3E-11 80.5 1.9 203 45-265 5-215 (242)
43 PF03125 Sre: C. elegans Sre G 98.0 0.0014 3.1E-08 64.4 20.5 265 39-319 25-324 (365)
44 PF02117 7TM_GPCR_Sra: Serpent 97.9 0.00093 2E-08 64.4 18.3 268 38-308 18-301 (328)
45 PF11710 Git3: G protein-coupl 97.4 0.0004 8.7E-09 61.7 6.6 109 378-489 36-153 (201)
46 PF10324 7TM_GPCR_Srw: Serpent 97.4 0.00021 4.6E-09 69.1 5.3 117 372-488 24-149 (318)
47 PF10323 7TM_GPCR_Srv: Serpent 97.3 0.00013 2.7E-09 69.1 2.9 115 373-487 28-144 (283)
48 PF10322 7TM_GPCR_Sru: Serpent 97.1 0.019 4.2E-07 54.4 14.9 183 116-308 103-304 (307)
49 PF01534 Frizzled: Frizzled/Sm 96.6 0.25 5.5E-06 47.4 18.3 153 40-194 8-175 (328)
50 PF02076 STE3: Pheromone A rec 96.3 0.25 5.3E-06 46.5 15.5 188 73-271 24-221 (283)
51 PF05462 Dicty_CAR: Slime mold 95.7 0.03 6.4E-07 53.1 7.1 107 372-489 35-141 (303)
52 PF03383 Serpentine_r_xa: Caen 95.6 0.0066 1.4E-07 50.5 1.8 106 76-181 4-109 (153)
53 PF03383 Serpentine_r_xa: Caen 94.9 0.024 5.2E-07 47.2 3.2 59 425-483 50-108 (153)
54 PF11970 Git3_C: G protein-cou 94.9 0.065 1.4E-06 39.0 5.0 67 240-306 4-74 (76)
55 PF06681 DUF1182: Protein of u 94.6 0.31 6.8E-06 42.3 9.2 109 111-227 112-224 (226)
56 PF02175 7TM_GPCR_Srb: Serpent 94.5 0.62 1.3E-05 41.7 11.0 47 108-154 77-123 (236)
57 KOG4289|consensus 90.7 1.9 4.2E-05 48.1 10.3 178 112-311 2222-2399(2531)
58 PF10316 7TM_GPCR_Srbc: Serpen 82.3 2.2 4.8E-05 39.9 4.8 83 380-462 42-124 (273)
59 PF03402 V1R: Vomeronasal orga 82.0 3.4 7.4E-05 38.4 5.8 103 372-479 5-111 (265)
60 PF05296 TAS2R: Mammalian tast 79.8 17 0.00038 34.7 10.1 38 222-259 208-248 (303)
61 PF10317 7TM_GPCR_Srd: Serpent 78.5 5.4 0.00012 37.9 6.2 102 375-482 31-140 (292)
62 PF00002 7tm_2: 7 transmembran 74.9 0.95 2.1E-05 41.6 0.0 102 373-482 30-131 (242)
63 PF10292 7TM_GPCR_Srab: Serpen 71.9 9.7 0.00021 36.8 6.2 109 374-483 47-159 (324)
64 PF10321 7TM_GPCR_Srt: Serpent 69.1 4.2 9.1E-05 38.9 2.9 88 373-468 62-155 (313)
65 PF02101 Ocular_alb: Ocular al 58.8 56 0.0012 31.9 8.2 91 381-479 70-170 (405)
66 PF10325 7TM_GPCR_Srz: Serpent 56.9 1.7E+02 0.0036 27.2 14.1 109 120-230 86-198 (267)
67 PF04789 DUF621: Protein of un 54.4 39 0.00084 31.4 6.0 106 376-481 47-152 (305)
68 PF13853 7tm_4: Olfactory rece 53.8 0.8 1.7E-05 38.3 -4.4 79 162-241 5-101 (144)
69 PF02118 Srg: Srg family chemo 48.1 7.5 0.00016 36.4 0.7 60 417-477 79-138 (275)
70 PF06681 DUF1182: Protein of u 46.5 80 0.0017 28.0 6.5 42 414-455 112-153 (226)
71 PF11044 TMEMspv1-c74-12: Plec 43.0 36 0.00078 21.5 2.8 25 207-231 11-35 (49)
72 PF06024 DUF912: Nucleopolyhed 40.0 99 0.0021 24.0 5.6 13 59-71 80-92 (101)
73 PF00003 7tm_3: 7 transmembran 38.8 46 0.00099 30.3 4.3 28 111-138 51-78 (238)
74 PF02175 7TM_GPCR_Srb: Serpent 37.2 46 0.00099 30.1 3.8 45 414-458 80-124 (236)
75 PF10326 7TM_GPCR_Str: Serpent 30.1 25 0.00055 33.5 1.2 64 415-479 78-141 (307)
76 PF02117 7TM_GPCR_Sra: Serpent 29.2 44 0.00094 32.4 2.6 64 414-478 96-159 (328)
77 PF10318 7TM_GPCR_Srh: Serpent 25.5 98 0.0021 29.3 4.3 106 375-482 40-146 (302)
78 PF11683 DUF3278: Protein of u 21.4 4.5E+02 0.0097 21.3 10.6 42 139-180 11-53 (129)
79 PF15086 UPF0542: Uncharacteri 21.1 98 0.0021 22.1 2.4 34 196-229 18-52 (74)
No 1
>KOG4219|consensus
Probab=100.00 E-value=6e-43 Score=322.51 Aligned_cols=281 Identities=20% Similarity=0.382 Sum_probs=238.8
Q ss_pred CCCcchHHHHHHHHHHHHHHHHhhhcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCccccc
Q psy11022 33 TLPYDWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIK 112 (492)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~ 112 (492)
...+.+...+.++++.++.+++++||+++++++..+|++|+.+|+|++|||+||++++++..++.......+ +|.+|
T Consensus 28 f~lp~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~---~W~~G 104 (423)
T KOG4219|consen 28 FVLPAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQ---EWYFG 104 (423)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh---ccccc
Confidence 345667788899999999999999999999999999999999999999999999999999999988877775 59999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhcc---------
Q psy11022 113 EIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKV--------- 183 (492)
Q Consensus 113 ~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~--------- 183 (492)
.+.|++..|+......+|++++++||+|||.||.||++.+ .++|.++..++++|+.++++++|..++..
T Consensus 105 ~f~C~f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~~r--~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~d~ 182 (423)
T KOG4219|consen 105 SFYCRFVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQPR--PSRRSSKIIILLIWALALLLALPQLLYSSVEELYLYDG 182 (423)
T ss_pred cceeeeccccchhhhhHhHHHHHHHHHHHHHHHhhhcccC--CCCcceeehhHHHHHHHHHHhccceeeeeeEEeeccCC
Confidence 9999999999999999999999999999999999997654 89999999999999999999999877421
Q ss_pred -cccccccccccc-----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC--CcccchhhHHHHH
Q psy11022 184 -GPDYCSKKVSYM-----------ELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKP--PVIFGWDYSLMLT 249 (492)
Q Consensus 184 -~~~~C~~~~~~~-----------~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~--~~~~~~~~~~~~~ 249 (492)
....|...++.. ..|.....++.+++|++++...|.+|.+++++.+..+.+.. .++.+.++|+.|+
T Consensus 183 ~~~~~~~~~~pe~~~~~~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~~gd~~d~~~~~~kak~K~vkm 262 (423)
T KOG4219|consen 183 ESRVVCVTAWPEHVCPTENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRIPGDQQDRKHEQLKAKKKVVKM 262 (423)
T ss_pred cceEEEEEecccccCCcchhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccCccchhchhhHHHHHHHHHHHH
Confidence 122344443221 22666677899999999999999999999998764333222 3445668899999
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHhccCC------cchHHHHHHHHHhhcccccchhhhhcChHHHHHHHHHhcccc
Q psy11022 250 NMYSYIMFIVLWIPFCIVMSVASFRHQ------ITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFHYCC 318 (492)
Q Consensus 250 ~~~~~~~f~i~~~P~~i~~~~~~~~~~------~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~~~~~ 318 (492)
++++++.|.+||+|+.+..++....+. ...++....||++.|++.||+||++.|++||..+++.|++|.
T Consensus 263 liiVV~~FaicWlPyh~y~il~~~~~~i~~~k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~gf~~~fr~cp 337 (423)
T KOG4219|consen 263 LIIVVVIFAICWLPYHIYFILNATNPEINRKKFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRFRGGFRRAFRWCP 337 (423)
T ss_pred HHHHHHHHHHhccChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccHhhhhhHHHHHHHHhhhhheee
Confidence 999999999999999999998876332 334445567999999999999999999999999999998664
No 2
>PHA03234 DNA packaging protein UL33; Provisional
Probab=100.00 E-value=4.1e-40 Score=317.58 Aligned_cols=263 Identities=12% Similarity=0.109 Sum_probs=204.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhcceeeeee--eeccccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCcccccccc
Q psy11022 38 WNRVARLLITTGLSVLGSVGNGYMISSV--MIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIM 115 (492)
Q Consensus 38 ~~~~~~~~~~~~~~i~gl~gN~~vi~~i--~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~ 115 (492)
..+.....++.+++++|++||+++++++ .+++++|+++|+|+.|||++|++.+ +.+|....... ..|.+|+..
T Consensus 30 ~~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~-l~lp~~~~~~~----~~w~fG~~l 104 (338)
T PHA03234 30 KAQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHM-LCVFFLTLNRE----ALFNFNQAF 104 (338)
T ss_pred HHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHH-HHHHHHHHHHh----CCccCchhH
Confidence 4677889999999999999999999854 4566778999999999999999998 45666554322 248999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhcc------cccccc
Q psy11022 116 CHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKV------GPDYCS 189 (492)
Q Consensus 116 C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~------~~~~C~ 189 (492)
|++..++......+|++++++||+|||+||++|.+++. ++++....+++.|+.+++.++|.+.+.. +...|.
T Consensus 105 Ck~~~~~~~~~~~~Si~~L~~ISiDRY~aIv~p~~~~~--~~~~~~~~i~~~Wi~s~l~~~P~l~~~~~~~~~~~~~~C~ 182 (338)
T PHA03234 105 CQCVLFIYHASCSYSICMLAIIATIRYKTLHRRKKNDK--KNNHIGRNIGILFLASAMCAIPAALFVKTEGKKGNYGKCN 182 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHeeeechhhhhh--hhhhHHHHHHHHHHHHHHHHhhHhHeeeeeecCCCCCcCc
Confidence 99999999999999999999999999999999976542 3344445566679999999999876421 114687
Q ss_pred cccccchhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHhHh
Q psy11022 190 KKVSYMELYQGI------IGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIP 263 (492)
Q Consensus 190 ~~~~~~~~~~~~------~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~P 263 (492)
..++....+... ...+.+++|++++.+||.+|.+++++.+ .++++|++|++++++++|++||+|
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~f~iPl~im~~cY~~I~~~L~~~~----------~~~~~k~~k~i~~vv~vF~iCWlP 252 (338)
T PHA03234 183 IHISSKKAYDLFIAIKIVFCFIWGIFPTMIFSFFYVIFCKALHALT----------EKKHKKTLFFIRILILSFLCIQIP 252 (338)
T ss_pred ccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------hhhhhhhhhHHHHHHHHHHHHHhH
Confidence 765432222221 1223468999999999999999987642 134678999999999999999999
Q ss_pred HHHHHHHHhcc----C--C-----cchHHHHHHHHHhhcccccchhhhhcChHHHHHHHHHhccc
Q psy11022 264 FCIVMSVASFR----H--Q-----ITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFHYC 317 (492)
Q Consensus 264 ~~i~~~~~~~~----~--~-----~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~~~~ 317 (492)
+.+..++.... . . ......+..+++++||++||+||++.+++||+++++++++.
T Consensus 253 y~iv~l~~~~~~~~~~~~c~~~~~~~~~~~v~~~La~~nsclNPiIY~f~~~~FR~~~~~~~~~~ 317 (338)
T PHA03234 253 NIAILICEIAFLYIANNSCFGLAQREILQIIIRLMPEIHCFSNPLVYAFTGGDFRLRFTACFQDF 317 (338)
T ss_pred HHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 99987654331 0 0 11224456689999999999999999999999999988653
No 3
>PHA03235 DNA packaging protein UL33; Provisional
Probab=100.00 E-value=2.5e-38 Score=311.78 Aligned_cols=265 Identities=14% Similarity=0.166 Sum_probs=205.4
Q ss_pred chHHHHHHHHHHHHHHHHhhhcceeeeeeee-cccc-ccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCccccccc
Q psy11022 37 DWNRVARLLITTGLSVLGSVGNGYMISSVMI-EDHL-RRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEI 114 (492)
Q Consensus 37 ~~~~~~~~~~~~~~~i~gl~gN~~vi~~i~~-~~~l-r~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~ 114 (492)
+..+....+++.+++++|++||+++++++.+ +|.. ++.+++|+.|||++|++.. +.+|+.+.. .. ..|..|+.
T Consensus 29 ~~~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~l-~~lP~~i~~---~~-~~~~~g~~ 103 (409)
T PHA03235 29 SAARTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLTV-FVLPFIMLS---NQ-GLLSGSVA 103 (409)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHHH-HHHHHHHHh---cC-ccccCCCC
Confidence 4467789999999999999999999987543 3332 3566899999999999874 788877643 11 12445578
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhcc-----------
Q psy11022 115 MCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKV----------- 183 (492)
Q Consensus 115 ~C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~----------- 183 (492)
.|++..++...+..+|++++++||+|||++|++|.+ .+..+++++...++++|+.+++.++|+..+..
T Consensus 104 ~Ck~~~~l~~~~~~~Si~tL~~ISiDRY~aI~~p~~-~~~~~~~~a~~ii~~iWi~sll~s~P~~~~~~~~~~~~~~~~~ 182 (409)
T PHA03235 104 GCKFASLLYYASCTVGFATVALIAADRYRVIHQRTR-ARSSAYRSTYKILGLTWFASLICSGPAPVYTTVVAHDDVDPEA 182 (409)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHHHHHHeechhh-ccCcccchhhhhHHHHHHHHHHHHHHHHHHHhhhhccccCcCC
Confidence 999999999999999999999999999999999964 44456888999999999999999998654321
Q ss_pred -cccccccccccch------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccchhhHHHHHHHHHHHH
Q psy11022 184 -GPDYCSKKVSYME------LYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIM 256 (492)
Q Consensus 184 -~~~~C~~~~~~~~------~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (492)
+...|...+.... .|.....++.+++|+++++++|.+|++++++++++ +++|..+++.++++.
T Consensus 183 ~~~~~C~~~~~~~~~~~~~~~y~i~l~i~~f~iPl~im~~~Y~~I~~~l~~~~~~----------~~~k~~~~v~iivv~ 252 (409)
T PHA03235 183 PGYETCVIYFRADQVKTVLSTFKVLLTLVWGIAPVVMMTWFYTFFYRTLKRASYK----------KRSRTLTFVCILLLS 252 (409)
T ss_pred CCcceeeEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----------cchhhhhhHHHHHHH
Confidence 1235865433221 23344556778999999999999999999886431 234667888888999
Q ss_pred HHHHhHhHHHHHHHHhccC-----------CcchHHHHHHHHHhhcccccchhhhhcChHHHHHHHHHhccc
Q psy11022 257 FIVLWIPFCIVMSVASFRH-----------QITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFHYC 317 (492)
Q Consensus 257 f~i~~~P~~i~~~~~~~~~-----------~~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~~~~ 317 (492)
|++||+|+.+..++..+.. .......+..++.++|+++||+||++.+++||+++++.++.+
T Consensus 253 F~iCWlPy~v~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~La~~ns~lNPiIY~~~~~~FRk~~~~~l~~~ 324 (409)
T PHA03235 253 FLCLQTPFVAIMIFDSYATLIWPSDCEHINLRDAVSTLSRLVPNLHCLLNPILYAFLGNDFLKRFRQCFRGE 324 (409)
T ss_pred HHHHHhHHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHHHHHhHhHHHHHHhhHHHHHHHHHHHhhh
Confidence 9999999999888754311 112334566789999999999999999999999999998653
No 4
>KOG4220|consensus
Probab=100.00 E-value=1.7e-38 Score=291.88 Aligned_cols=280 Identities=21% Similarity=0.344 Sum_probs=243.8
Q ss_pred CCCcchHHHHHHHHHHHHHHHHhhhcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCccccc
Q psy11022 33 TLPYDWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIK 112 (492)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~ 112 (492)
.....+.-+.++++...++++.++||++|++.+..+|+|++..|+|+++||+||++.+.+.+|.+....+.+. |++|
T Consensus 23 ~~~~~~q~v~i~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg~---W~LG 99 (503)
T KOG4220|consen 23 TRYETWQVVFIVVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMGY---WPLG 99 (503)
T ss_pred CCccceEEEeeehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHHcc---cccc
Confidence 3444555667888899999999999999999999999999999999999999999999999999999999885 9999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhc--------cc
Q psy11022 113 EIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYK--------VG 184 (492)
Q Consensus 113 ~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~--------~~ 184 (492)
...|.+...+-+....+|++.++.|++|||+.|.+|+.|+.++|.+++...|+++|++|+++-.|.+++. ..
T Consensus 100 ~~~CdlWLalDYvaSNASVmNLLiISFDRYFsVTrPLtYrakRTtkrA~~MI~~AW~iSfiLWaPaIl~WqyivGkrTv~ 179 (503)
T KOG4220|consen 100 PLVCDLWLALDYVASNASVMNLLIISFDRYFSVTRPLTYRAKRTTKRAGLMIGAAWVLSFVLWAPAILFWQYIVGKRTVP 179 (503)
T ss_pred hHHHHHHHHHHHHhhhhhhhhhheeeeecceeecccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhHhheeeeecC
Confidence 9999999999999999999999999999999999999999999999999999999999999998877643 24
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---------------------------------
Q psy11022 185 PDYCSKKVSYMELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQN--------------------------------- 231 (492)
Q Consensus 185 ~~~C~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~--------------------------------- 231 (492)
.+.|..+.-.......-..+..|.+|..+|++.|.+|++..+++.++
T Consensus 180 ~~eC~iQFlsnp~iTfGTAiAAFYlPVtiM~~LY~rIyret~kR~k~~~~lq~s~~~~~~~~~~~~~~~~~~~~s~r~~p 259 (503)
T KOG4220|consen 180 DGECYIQFLSNPAITFGTAIAAFYLPVTIMTILYWRIYRETRKRQKELAKLQASLPSFSAIKLSPESPKGDSKSSGRSSP 259 (503)
T ss_pred CCceEEEeecCceeehhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccCcccccccccCCCCCCC
Confidence 56798875444555566667889999999999999999999875421
Q ss_pred ------------------------------------------------------------------C-------------
Q psy11022 232 ------------------------------------------------------------------P------------- 232 (492)
Q Consensus 232 ------------------------------------------------------------------~------------- 232 (492)
.
T Consensus 260 ~~~~~~~~~~~~~~~~~k~ps~~~~~~~~~s~~edsd~~~~~s~~~s~~~~~~se~~~~~~v~~~~~~~~~~~D~~~~~~ 339 (503)
T KOG4220|consen 260 SEEGKREPLTNGCISNSKAPSLTPTESWKPSEKEDSDESSSESLTSSPLERPGSELSEIEAVVAKMPANQRKVDEEGLNT 339 (503)
T ss_pred ccccccccCCCCccccccCcccCCccCCCCccccccccccccccccCCccccccccccccceeccCCCCcCCCCcccccc
Confidence 0
Q ss_pred ------CC------------------------------CC--------------------------CcccchhhHHHHHH
Q psy11022 233 ------SF------------------------------KP--------------------------PVIFGWDYSLMLTN 250 (492)
Q Consensus 233 ------~~------------------------------~~--------------------------~~~~~~~~~~~~~~ 250 (492)
.+ ++ +....+|+|++|++
T Consensus 340 ~i~i~~~~~~p~s~sc~p~~~~t~~~~~s~~ns~~gk~r~~~~~~~~~~~~kkf~~~~r~q~~k~k~~~~~rErKAAkTL 419 (503)
T KOG4220|consen 340 LIQIPTDQMLPKSDSCVPIFSATDTDKTTDTNSGAGKRRAGPVARKTGLDYKKFAKRARSQSRKKKKMSLVRERKAAKTL 419 (503)
T ss_pred ccccccccCCCCCCcccccccccccccCCccCccccccccCccccccchhhhhhhhhhhhhhhhhcchhhHHHHHHHHHH
Confidence 00 00 00013578999999
Q ss_pred HHHHHHHHHHhHhHHHHHHHHhc--cCCcchHHHHHHHHHhhcccccchhhhhcChHHHHHHHHHhc
Q psy11022 251 MYSYIMFIVLWIPFCIVMSVASF--RHQITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFH 315 (492)
Q Consensus 251 ~~~~~~f~i~~~P~~i~~~~~~~--~~~~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~~ 315 (492)
..+.+.|+++|.||.|+.++..+ ...+..+..+..||-|+||.+||+.|.+.|+.||+.+++++.
T Consensus 420 sAILlAFIiTWtPYNImVlv~tFC~~CiP~tlW~~gYwLCYINSTiNP~CYALCNatFrkTfk~lL~ 486 (503)
T KOG4220|consen 420 SAILLAFILTWTPYNIMVLVNTFCKNCIPETLWTFGYWLCYINSTINPLCYALCNATFRKTFKRLLL 486 (503)
T ss_pred HHHHHHHHHHcccceeeeehHhhcccccchhHhhhhhheeeecccccHHHHHHHhHHHHHHHHHhhe
Confidence 99999999999999999999988 556778888889999999999999999999999999999995
No 5
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=100.00 E-value=6.7e-36 Score=295.95 Aligned_cols=264 Identities=19% Similarity=0.322 Sum_probs=212.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCccccccccchh
Q psy11022 39 NRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHV 118 (492)
Q Consensus 39 ~~~~~~~~~~~~~i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~ 118 (492)
......+++.+++++|++||+++++++. +|++|+++|++++|||++|++.. +.+|+.+..... .|.+|+..|++
T Consensus 97 ~~~~l~~~y~lvfvlgliGN~LVl~il~-~k~lrt~t~i~llnLAisDLl~~-l~lPf~i~~~~~----~W~fg~~~Ck~ 170 (417)
T PHA02638 97 ISEYIKIFYIIIFILGLFGNAAIIMILF-CKKIKTITDIYIFNLAISDLIFV-IDFPFIIYNEFD----QWIFGDFMCKV 170 (417)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCHhHHHHHHHHHHHHHHH-HHHHHHHHHHhc----cccccccchhh
Confidence 4567788899999999999999997664 58889999999999999999886 688987765432 48999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhcc-----------c---
Q psy11022 119 QWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKV-----------G--- 184 (492)
Q Consensus 119 ~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~-----------~--- 184 (492)
..++...+..++++.++++++|||+||++|.++++..+++.....++++|+.+++.++|++.+.. +
T Consensus 171 ~~~l~~~~~~~Si~~L~~isiDRYlaIv~p~~~~~~~~~~~~~i~~~~iW~~s~l~slP~~~~~~~~~~~~~~~~~~~~~ 250 (417)
T PHA02638 171 ISASYYIGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLIITSPAYFIFEASNIIFSAQDSNETI 250 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccceecHhhhHhhHhHHHHHHHHHHHHHHHHhhccccccccccCCCCc
Confidence 99999999999999999999999999999998877778888888899999999999999876421 1
Q ss_pred -ccccccccccch--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccchhhHHHHHHHHHHH
Q psy11022 185 -PDYCSKKVSYME--------LYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYI 255 (492)
Q Consensus 185 -~~~C~~~~~~~~--------~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (492)
...|....+... .+.....++.+++|++++++||.+|+++++|.++ ++++|..|+++.+++
T Consensus 251 ~~~~C~~~~~~~~~~~~~~~~~~~~~~~i~~f~lPl~vmi~cY~~I~~~L~~~~~----------~~k~k~~rli~~ivi 320 (417)
T PHA02638 251 SNYQCTLIEDNEKNNISFLGRILQFEINILGMFIPIIIFAFCYIKIILKLKQLKK----------SKKTKSIIIVSIIII 320 (417)
T ss_pred cCCeeeeeccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------cccchhhhhHHHHHH
Confidence 225765432211 1122234567899999999999999999987532 224567899999999
Q ss_pred HHHHHhHhHHHHHHHHhccC----------C------cchHHHHHHHHHhhcccccchhhhhcChHHHHHHHHHhcccc
Q psy11022 256 MFIVLWIPFCIVMSVASFRH----------Q------ITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFHYCC 318 (492)
Q Consensus 256 ~f~i~~~P~~i~~~~~~~~~----------~------~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~~~~~ 318 (492)
.|++||+|+.+..++..... . ......+...++++|+++||+||++.+++||+++++++++..
T Consensus 321 ~f~lcW~Py~i~~ll~~~~~~~~~~~~~~~~~c~~~~l~~~~~vt~~la~~~sclNPiIY~f~~~~FR~~l~~~~~~~~ 399 (417)
T PHA02638 321 CSLICWIPLNIVILFATMYSFKGFNSIISEHICGFIKLGYAMMLAEAISLTHCCINPLIYTLIGENFRMHLLMIFRNIF 399 (417)
T ss_pred HHHHHHhhHHHHHHHHHHHHhhccccccccccccHHHHHHHHHHHHHHHHHHHhhhHHHHHHhCHHHHHHHHHHHHHhc
Confidence 99999999999888765421 0 112234566889999999999999999999999999885443
No 6
>PHA02834 chemokine receptor-like protein; Provisional
Probab=100.00 E-value=2.5e-36 Score=291.47 Aligned_cols=260 Identities=18% Similarity=0.301 Sum_probs=203.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCccccccccchh
Q psy11022 39 NRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHV 118 (492)
Q Consensus 39 ~~~~~~~~~~~~~i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~ 118 (492)
.+....+++.+++++|++||+++++++.++|+ +++.|+|+.|||++|++. .+.+|+.+..... .|.+|+..|++
T Consensus 27 ~~~~~~~~~~li~v~~~~gN~lVi~vi~~~~~-~~~~n~~i~nLAiaDll~-~~~lP~~i~~~~~----~w~~g~~~C~~ 100 (323)
T PHA02834 27 VNYFVIVFYILLFIFGLIGNVLVIAVLIVKRF-MFVVDVYLFNIAMSDLML-VFSFPFIIHNDLN----EWIFGEFMCKL 100 (323)
T ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHHHHhccc-cchhhhhhHHHHHHHHHH-HHHHHHHHHHHcC----CcCCcchHHHh
Confidence 35677899999999999999999998877555 457899999999999986 4688887654432 48999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhcc-----cccccccccc
Q psy11022 119 QWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKV-----GPDYCSKKVS 193 (492)
Q Consensus 119 ~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~-----~~~~C~~~~~ 193 (492)
..++...+..+|++++++||+|||++|++|++++. .+.+++...++.+|+.+++.++|+..... +...|.....
T Consensus 101 ~~~~~~~~~~~Si~tL~~IsidRY~aI~~P~~~~~-~~~~~~~~~i~~iWi~s~l~~~P~~~~~~~~~~~~~~~C~~~~~ 179 (323)
T PHA02834 101 VLGVYFVGFFSNMFFVTLISIDRYILVVNATKIKN-KSISLSVLLSVAAWVCSVILSMPAMVLYYVDNTDNLKQCIFNDY 179 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhheeCchhccC-CccchHHHHHHHHHHHHHHHHhhHHHHHHhccCCCceEEeccCC
Confidence 99999999999999999999999999999987644 45567777888999999999998865321 2235863322
Q ss_pred c-chh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHhHhHHHHH
Q psy11022 194 Y-MEL----YQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVM 268 (492)
Q Consensus 194 ~-~~~----~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~ 268 (492)
. ... +.....+..+++|++++.++|.+|.+++|++++ ++++|..|+++++++.|++||+|+.+..
T Consensus 180 ~~~~~~~~~~~~~~~i~~f~iPl~ii~~~Y~~I~~~l~~~~~----------~~~~k~~k~~~~vv~~F~icWlPy~i~~ 249 (323)
T PHA02834 180 HENFSWSAFFNFEINIFGIVIPLIILIYCYSKILYTLKNCKN----------KNKTRSIKIILTVVTFTVVFWVPFNIVL 249 (323)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----------cccceEEeehhHHHHHHHHHHhhHHHHH
Confidence 1 111 112234578899999999999999999987532 1245678899999999999999999988
Q ss_pred HHHhccCC-----c----ch---HHHHHHHHHhhcccccchhhhhcChHHHHHHHHHhc
Q psy11022 269 SVASFRHQ-----I----TP---SFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFH 315 (492)
Q Consensus 269 ~~~~~~~~-----~----~~---~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~~ 315 (492)
++..+.+. . .. ...+..+++++||++||+||++.|++||++++++++
T Consensus 250 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~iNPiIY~~~~~~fR~~~~~~~~ 308 (323)
T PHA02834 250 FINSLQSVGLIDIGCYHFKKIVYSIDIAELISFVHCCVNPIIYAFVGKNFKKVFKNMFC 308 (323)
T ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHhhccccHHHHHHhcHHHHHHHHHHHH
Confidence 76544110 0 11 123556899999999999999999999999999884
No 7
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=100.00 E-value=1.4e-33 Score=275.08 Aligned_cols=265 Identities=18% Similarity=0.284 Sum_probs=212.5
Q ss_pred chHHHHHHHHHHHHHHHHhhhcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCccccccccc
Q psy11022 37 DWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMC 116 (492)
Q Consensus 37 ~~~~~~~~~~~~~~~i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C 116 (492)
+........++.+++++|++||+++++++.++ ++|++.|+++.|||++|++.+ +..|......... .|.+|+..|
T Consensus 37 ~~~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~-~~~~~~~~~~~~~---~~~~~~~~C 111 (335)
T PHA03087 37 DTNSTILIVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFV-MTLPFQIYYYILF---QWSFGEFAC 111 (335)
T ss_pred cchhhHHHHHHHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHH-HhHHHHHHHHhCC---CCCCCcHHH
Confidence 33567888899999999999999999998877 889999999999999999887 4566655333222 478899999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhc-----ccccccccc
Q psy11022 117 HVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYK-----VGPDYCSKK 191 (492)
Q Consensus 117 ~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~-----~~~~~C~~~ 191 (492)
+...++......+|++++++||+|||++|++|++|+...+.+++..+++++|+.+++.++|+.... .+...|...
T Consensus 112 ~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~p~~~~~~~~~~~~~~~~~~iWl~~~~~~~p~~~~~~~~~~~~~~~C~~~ 191 (335)
T PHA03087 112 KIVSGLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIISIIETTPILFVYTTKKDHETLICCMF 191 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhHHHHHHHHHHHHHHhccHhheeeeeccCCCceEEec
Confidence 999999999999999999999999999999999998899999999999999999999998876642 223456555
Q ss_pred cccc-hhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHhHhHHH
Q psy11022 192 VSYM-ELY----QGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCI 266 (492)
Q Consensus 192 ~~~~-~~~----~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i 266 (492)
++.. ..+ ......+.+++|.++++++|.++.++++++++ .++++|..|++..++++|++||.|+.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~i~~~l~~~~~---------~~~~~k~~k~l~~iv~~f~i~w~P~~i 262 (335)
T PHA03087 192 YNNKTMNWKLFINFEINIIGMLIPLTILLYCYSKILITLKGINK---------SKKNKKAIKLVLIIVILFVIFWLPFNV 262 (335)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------chhcchHHHhHHHHHHHHHHHHHHHHH
Confidence 4321 111 11234567899999999999999998887642 234568899999999999999999998
Q ss_pred HHHHHhc-----cCC------cchHHHHHHHHHhhcccccchhhhhcChHHHHHHHHHhc
Q psy11022 267 VMSVASF-----RHQ------ITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFH 315 (492)
Q Consensus 267 ~~~~~~~-----~~~------~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~~ 315 (492)
..++... .+. ......+..++..+|+++||+||++++++||+++++.++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~~NPiIY~~~~~~fr~~~~~~~~ 322 (335)
T PHA03087 263 SVFVYSLHILHFKSGCKAVKYIQYALHVTEIISLSHCCINPLIYAFVSEFFNKHKKKSLK 322 (335)
T ss_pred HHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhHHHHcCHHHHHHHHHHHH
Confidence 7766533 110 112233456788899999999999999999999999885
No 8
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=99.97 E-value=5.5e-31 Score=246.59 Aligned_cols=240 Identities=24% Similarity=0.458 Sum_probs=207.0
Q ss_pred hcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCccccccccchhhHHHHHHHHHHHHHHHHH
Q psy11022 57 GNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAM 136 (492)
Q Consensus 57 gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ 136 (492)
||+++++++.++|++|++.+++++|||++|++.++...|........+ .|..++..|++..++.......+.+++++
T Consensus 1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~---~~~~~~~~C~~~~~~~~~~~~~s~~~~~~ 77 (257)
T PF00001_consen 1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFD---DWIFSSFLCRIFGFLFYFSSFSSIFSLVA 77 (257)
T ss_dssp HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHS---SCTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhehhhhhhhccCCChhHHHHHHHHHHHHhhccccccccccccccc---ccccccccccccccccccccccccccccc
Confidence 899999999999999999999999999999999988888887776663 47889999999999999999999999999
Q ss_pred HHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhcc----c---ccccccccccc--hhHHHHHHHHHH
Q psy11022 137 IAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKV----G---PDYCSKKVSYM--ELYQGIIGSLFF 207 (492)
Q Consensus 137 ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~----~---~~~C~~~~~~~--~~~~~~~~~~~~ 207 (492)
+++|||++|++|.+|++..+++++...++++|+.+++.++|+..... . ...|....+.. ..+......+.+
T Consensus 78 is~dRy~~i~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~ 157 (257)
T PF00001_consen 78 ISIDRYLAICHPLRYRRIRTRRRARIIIILIWIISFLISLPPLFFSWVYFVSDGSQSFCFIDFSSSSSQIYFIYFFIVFF 157 (257)
T ss_dssp HHHHHHHHHHSHHTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEESTCCCEEEEESCSSSHHHHHHHHHHHHHT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999866421 1 24688776554 367777788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCC----CCcccchhhHHHHHHHHHHHHHHHHhHhHHHHHHHHhccCCc----ch
Q psy11022 208 FIPIIITCILYMKITYKVRLARQNPSFK----PPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQI----TP 279 (492)
Q Consensus 208 ~ip~~ii~~~y~~i~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~~~~~~~~~~----~~ 279 (492)
++|++++.++|.++++++||++++.++. .+++.++|+|.++++..++++|++||+|+.+..++....+.. ..
T Consensus 158 ~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~ 237 (257)
T PF00001_consen 158 ILPLIIILICYIRILRKLRRQRKRIKSQSSSSSRRRSRRERRAARTLLIIVLVFLLCWLPYFILSLLSVFSPSSSLISSI 237 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTCCHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTSTCSHHH
T ss_pred ccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccCCceeHHHHHHHHcCccchhhHH
Confidence 9999999999999999999988765442 244567789999999999999999999999999888874333 45
Q ss_pred HHHHHHHHHhhcccccchhh
Q psy11022 280 SFYYLAWLALSKSCINSVLY 299 (492)
Q Consensus 280 ~~~~~~~l~~~~s~~nP~IY 299 (492)
......++.++|+++||+||
T Consensus 238 ~~~~~~~l~~~~s~~nP~iY 257 (257)
T PF00001_consen 238 LFYISYFLAFLNSCLNPIIY 257 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCcEEC
Confidence 56667789999999999998
No 9
>KOG2087|consensus
Probab=99.90 E-value=7.3e-24 Score=194.51 Aligned_cols=270 Identities=17% Similarity=0.219 Sum_probs=205.2
Q ss_pred HHHHHHHHHHHHHhhhcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCC-C---ccccccccch
Q psy11022 42 ARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIK-Q---AEPIKEIMCH 117 (492)
Q Consensus 42 ~~~~~~~~~~i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~-~---~~~~~~~~C~ 117 (492)
++-+..-+++.++++||.+|+......|...++...+++|||.+|+++++-.........-.... . .|-.+...|+
T Consensus 26 ~lRi~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~ai~W~tg~gC~ 105 (363)
T KOG2087|consen 26 ILRISVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYKHAIDWQTGLGCP 105 (363)
T ss_pred eeeehhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHHHHhhhhcCCCc
Confidence 44556667889999999999999988888778889999999999999994322222222111110 0 2333567799
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhcc---ccccccccc--
Q psy11022 118 VQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKV---GPDYCSKKV-- 192 (492)
Q Consensus 118 ~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~---~~~~C~~~~-- 192 (492)
+.+|+..+....|+++++.+++||++.|++|++-.+....|....+.+..|+.+++.++.|.+... ..+.|.+-.
T Consensus 106 ~aGflavFASElSv~~LT~itlEr~l~i~~p~~~~~~~~lr~~~~ill~~wl~~~l~A~~Pl~g~s~Y~~~~vClPL~~~ 185 (363)
T KOG2087|consen 106 VAGFLAVFASELSVFLLTLITLERWLSITYPFRLDRKAKLRPLVLILLLGWLFAFLMALLPLFGISSYGASSVCLPLHIE 185 (363)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhheeccccCCCcccccHHHHHHHHHHHHHHHHHhccccCCCCCcccceeeecccC
Confidence 999999999999999999999999999999998888777777999999999999999988876543 235677652
Q ss_pred ccchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q psy11022 193 SYMEL-YQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVA 271 (492)
Q Consensus 193 ~~~~~-~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~~~~ 271 (492)
+.... +.....+....+.++++.++|++++..++|...+...+. .+.+|-+..++.+-.+||.|..+..+..
T Consensus 186 ~~~s~g~y~~~~l~~N~lafiiia~~Y~~iy~~l~~~~~~~~~~~-------~~~akr~a~LvfTd~icw~Pi~f~~~~a 258 (363)
T KOG2087|consen 186 EPLSTGYYLVALLGLNLLAFIIIAFSYGKIYCSLRKGDLSATLIS-------TSVAKRMAFLVFTDCICWCPIAFFKFSA 258 (363)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhhhhheeeecCCCccccch-------hhhhhCeeEEEEccccccCchheeeeHH
Confidence 22233 677777888999999999999999999888644332221 4567777888889999999998887776
Q ss_pred hccCCcchHHH---HHHHHHhhcccccchhhhhcChHHHHHHHHHhcccc
Q psy11022 272 SFRHQITPSFY---YLAWLALSKSCINSVLYCISNRHFRNAYINLFHYCC 318 (492)
Q Consensus 272 ~~~~~~~~~~~---~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~~~~~ 318 (492)
..+.......+ +..+..-+|+++||++|.+.++.||+.++.+..+..
T Consensus 259 l~~~~li~~~~sk~llv~flPlns~~NP~LYa~fT~~fk~d~~~l~~k~~ 308 (363)
T KOG2087|consen 259 LIGVELISVSYSKWLLVFFLPLNSCLNPFLYAFFTPVFKEDLFLLLSKVG 308 (363)
T ss_pred hcCCcccChhhceeEEEEEEEcccccCchhHHHcCHHHHHHHHHHHhhcc
Confidence 66332222221 222333489999999999999999999999886653
No 10
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.90 E-value=1.9e-23 Score=194.14 Aligned_cols=250 Identities=19% Similarity=0.280 Sum_probs=189.8
Q ss_pred HHHhhhcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCccccccccchhhHHHHHHHHHHHH
Q psy11022 52 VLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTV 131 (492)
Q Consensus 52 i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~ 131 (492)
++|++||..++.++.++|++|+|.+++++.+|++|++.+...+|...... .+ ....+..|..+.+...++...+.
T Consensus 2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~~-~~----~~i~~~~Cf~~~~~~~f~~~~qs 76 (257)
T PF10320_consen 2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLFLF-RD----HQITRSECFWQIFFYIFFQCAQS 76 (257)
T ss_pred EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHHHH-hh----eeccHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999988888776433 22 24456679999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhcc--cccccccccccchhHHHHHHHHHHHH
Q psy11022 132 WTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKV--GPDYCSKKVSYMELYQGIIGSLFFFI 209 (492)
Q Consensus 132 ~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~--~~~~C~~~~~~~~~~~~~~~~~~~~i 209 (492)
..+++|++||++||+.|++|++..+.+..........+.+.......+...+ ....|.+.................++
T Consensus 77 ~~~l~i~iDr~iaV~~P~~Y~~~~~~~y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~C~pp~a~~~~~~~~~~~~~~~i 156 (257)
T PF10320_consen 77 VIMLAIAIDRLIAVCFPLRYRTISTRKYLIILLIFPVIYSIFFTVIGFLYRDDETIVICNPPLAFHGTASQIWSYSNIII 156 (257)
T ss_pred HHHHHHHhhheeeEeehhhhhhcccccchhhHhHHHHHHHHHHHhheeEecCCcccccCCCccccCccHHHHHHHHHHHH
Confidence 9999999999999999999999988887777667777777766555544433 35679887544333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHhHhHHHHHHHHhccCCcc----hHHHHHH
Q psy11022 210 PIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQIT----PSFYYLA 285 (492)
Q Consensus 210 p~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~~~~~~~~~~~----~~~~~~~ 285 (492)
-++.++.|.......++++++ ..++++|..|.+...++.|+..|.-..+...+....+... .......
T Consensus 157 -nv~tvivY~i~~~~~~~k~~~-------~~~~~~kv~ksL~v~v~i~i~~w~~s~~~~~v~~~~~~~~~~~~~i~~~~~ 228 (257)
T PF10320_consen 157 -NVITVIVYIITIIIFKRKSRS-------NSSRSKKVFKSLKVTVIIFIFSWFLSQIINTVSLALGLDGETIAIIQMYAG 228 (257)
T ss_pred -HHHHHHHHHHHHHHHHHHccc-------cchhHHHHHHHhhhheeeeeHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 344566777777777775443 3455788999999999999999987776666555422222 2334456
Q ss_pred HHHhhcccccchhhhhcChHHHHHHHHHh
Q psy11022 286 WLALSKSCINSVLYCISNRHFRNAYINLF 314 (492)
Q Consensus 286 ~l~~~~s~~nP~IY~~~~~~~R~~~~~~~ 314 (492)
++...+.+.|.++|.++|+|+|+++++++
T Consensus 229 i~v~~~~s~~ffV~~~~S~EYR~af~~~~ 257 (257)
T PF10320_consen 229 IFVNISYSQNFFVYYWRSSEYRKAFRELF 257 (257)
T ss_pred HHHHHHHHHHheEEEEcCHHHHHHHHHhC
Confidence 78889999999999999999999999875
No 11
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=99.83 E-value=1.7e-19 Score=174.49 Aligned_cols=266 Identities=18% Similarity=0.237 Sum_probs=198.1
Q ss_pred HHHHHHhhhcceeeeeeeecccccc-chhhHHHHHHHHHHHhhhchhcHHHHHHHhcC--CC----ccccccccchhhHH
Q psy11022 49 GLSVLGSVGNGYMISSVMIEDHLRR-RGNTYIAVEALADLLVSGVVIPVSAVMILAGI--KQ----AEPIKEIMCHVQWF 121 (492)
Q Consensus 49 ~~~i~gl~gN~~vi~~i~~~~~lr~-~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~--~~----~~~~~~~~C~~~~~ 121 (492)
+++++|+++|.+.++++ .+|++|+ +.|.++..+|++|++..+..++.......... .. ..........+...
T Consensus 5 ~~~~~g~~~N~~h~~VL-trk~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~~~~~~ 83 (318)
T PF10324_consen 5 ILSIFGLFINIFHLIVL-TRKSMRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFKLIMES 83 (318)
T ss_pred EEeHHHHHHHHHHhhhc-CChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHH
Confidence 35689999999999666 5688887 88999999999999999888888776655442 11 11111122344457
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccc--cccchhhHHhHhhHHHHHHHHHhhhhhhhc---------cccccccc
Q psy11022 122 LTLLCSLVTVWTLAMIAMENYVRLCMPPECY--TFFSKSHIILSVIMIWLVSILLTTLQFIYK---------VGPDYCSK 190 (492)
Q Consensus 122 ~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~--~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~---------~~~~~C~~ 190 (492)
+...+...|.|..++||+.|++++.+|+..+ +..+++.+...+.++++++.+++.+.+... ...+.|..
T Consensus 84 l~~~~~~~S~WL~V~mA~iR~l~i~~p~~~~~~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~~~i~~~~~~~~p~~~C~~ 163 (318)
T PF10324_consen 84 LSDIFRRISIWLGVLMALIRYLSIKFPMSSRFQKLSKPKFAIIVILIVFIISFLFSIPYFFRYKIVEVSDPWVPPPNCSG 163 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeeeeehHHHHHHHHHHHHHhhceEEEEeccccccCCCceee
Confidence 7788899999999999999999999997653 355677788888888899988888876521 12345862
Q ss_pred cc-----cc------------c----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccchhhHHHHH
Q psy11022 191 KV-----SY------------M----ELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLT 249 (492)
Q Consensus 191 ~~-----~~------------~----~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 249 (492)
.. +. . ..+....+++.-++|.++..+....+.+++||.++++++..+++.+++.+.+++
T Consensus 164 ~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~gi~~kiiP~il~~ilti~Li~~Lrk~~~~r~~~~~~~~~~~~~tt~l 243 (318)
T PF10324_consen 164 FPENYTFPRYMLNISELFTENDCLFFRIYFFIDGIFFKIIPCILLPILTILLIIELRKAKKRRKKLSSSKSKKSDRTTKL 243 (318)
T ss_pred ccccccccccchhhhhhhhhhHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHhccHhhhcccccccccccchHHH
Confidence 11 00 0 112222233457899999999999999999998766555443335567789999
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHhccCC-------cchHHHHHHHHHhhcccccchhhhhcChHHHHHHHHHhc
Q psy11022 250 NMYSYIMFIVLWIPFCIVMSVASFRHQ-------ITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFH 315 (492)
Q Consensus 250 ~~~~~~~f~i~~~P~~i~~~~~~~~~~-------~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~~ 315 (492)
+..+++.|+++-+|..+..++...... ......+...+..+|+..|++||..++.+||+++|++++
T Consensus 244 i~~~ti~f~i~e~p~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~h~~ic~~mSsqYR~t~~~~f~ 316 (318)
T PF10324_consen 244 ILFMTISFLISELPQGIIFLLESFFEEDSGLIFIIIQLSIIFNILITINSSIHFFICCFMSSQYRKTVKKLFG 316 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHHhc
Confidence 999999999999999999998775211 123344556788899999999999999999999999995
No 12
>KOG4219|consensus
Probab=99.77 E-value=1.8e-19 Score=167.52 Aligned_cols=111 Identities=21% Similarity=0.285 Sum_probs=104.6
Q ss_pred CCcccccccccchHhHHHHHhhHhhhccchhHHHHHHHhcCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceee
Q psy11022 368 SPYRSIIHITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVR 447 (492)
Q Consensus 368 ~~~~~~l~~~~~~~~~~la~~D~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~a 447 (492)
...+.++|+.+|+++.|||+||++++++..|+......+. .|.+|..+|++..|+......+|+++|+|||+|||+|
T Consensus 60 il~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~---~W~~G~f~C~f~nf~~itav~vSVfTlvAiA~DRy~A 136 (423)
T KOG4219|consen 60 ILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQ---EWYFGSFYCRFVNFFPITAVFVSVFTLVAIAIDRYMA 136 (423)
T ss_pred EeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh---ccccccceeeeccccchhhhhHhHHHHHHHHHHHHHH
Confidence 3466789999999999999999999999999999988888 8999999999999999999999999999999999999
Q ss_pred eeccCcccceeehhHHHHHHHHHHHHHHHHhhhccc
Q psy11022 448 LCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFE 483 (492)
Q Consensus 448 i~~p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~ 483 (492)
|.||++.+ .+++.+++.++.+|++|+++++|...
T Consensus 137 Ii~Pl~~r--~s~r~sk~iIllIW~lA~l~a~P~~l 170 (423)
T KOG4219|consen 137 IIHPLQPR--PSRRSSKIIILLIWALALLLALPQLL 170 (423)
T ss_pred HhhhcccC--CCCcceeehhHHHHHHHHHHhcccee
Confidence 99999844 89999999999999999999999884
No 13
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.77 E-value=9.5e-18 Score=158.29 Aligned_cols=260 Identities=16% Similarity=0.218 Sum_probs=189.7
Q ss_pred HHHHHHhhhcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCccccccc-cchhhHHHHHHHH
Q psy11022 49 GLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEI-MCHVQWFLTLLCS 127 (492)
Q Consensus 49 ~~~i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~-~C~~~~~~~~~~~ 127 (492)
+++++|++.|.+++..+.+.|++|++.+.+..+.|++|.+.++..+....+....+... ..+. .-.+.+.....++
T Consensus 2 ~~s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~l~~~~P~~~~~~~~---~~~~~~s~~~g~~~~~~y 78 (274)
T PF10328_consen 2 LISIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIFLFWVVPMTLLDISF---LPSSLNSIIFGFIGMFCY 78 (274)
T ss_pred eeeHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc---CchHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999986666666666555422 1221 3445588889999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhc-ccccc-----ccc-c-cccchhHH
Q psy11022 128 LVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYK-VGPDY-----CSK-K-VSYMELYQ 199 (492)
Q Consensus 128 ~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~-~~~~~-----C~~-~-~~~~~~~~ 199 (492)
..+.++..+||++|++||..|.+|++..+.+.+..++++.|++++....+..... +...+ -.. . .+....+.
T Consensus 79 ~~~~~~~~liaiNRf~ai~fP~~y~~~fs~~~T~~~i~~~~~~~~~~~~~~~~~~~C~~~y~~~~~~~~~~~~~~C~~~~ 158 (274)
T PF10328_consen 79 FIGPLSHLLIAINRFCAIFFPFKYKKIFSFKNTIILIAFIWLLSIIISTILYFPDGCYFYYDPETWSWSYPTDPPCGNYS 158 (274)
T ss_pred HHHHHHHHHHHHHHHheeeeHHHHHhHcCccceehhhhHHHHHHHHHHHHhhhcCCCcceeccceeeeecCCCCccchhh
Confidence 9999999999999999999999999999999999999999999997765554421 11100 000 0 01122333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---CCCCCcccchhhHHHHHHHHHHHHHHHHhHhHHHHHHHHhccCC
Q psy11022 200 GIIGSLFFFIPIIITCILYMKITYKVRLARQNP---SFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQ 276 (492)
Q Consensus 200 ~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~~~~~~~~~ 276 (492)
.........+-.+++.+++..++.++++.+++. .++.++++++|.+..++....-..+++.+.-+.....+ .+.
T Consensus 159 ~~~~~~~~~~~~~~~~~lni~t~ikl~~~~~~~~~~~~~s~~r~rke~~f~~Qs~~Q~~~~~i~~~~~~~~~~~---~~~ 235 (274)
T PF10328_consen 159 WYFDFYKNFILVIISNILNIITFIKLRKFRKKISVSSSESKKRRRKEIRFFIQSFIQDLLYLIDLIFYFFIPPL---SSN 235 (274)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccc
Confidence 334444555556667777777777777665543 34455667778899999999999999988777655433 223
Q ss_pred cchHHHHHHHHHhhcccccchhhhhcChHHHHHHHHHh
Q psy11022 277 ITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLF 314 (492)
Q Consensus 277 ~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~ 314 (492)
....+..........+++|++|+...|+|+|+.+++..
T Consensus 236 ~~~~F~~~t~~w~~~h~~DG~i~l~fN~~~r~~~~~~~ 273 (274)
T PF10328_consen 236 RWWQFFCTTFSWVLVHALDGLIMLIFNSEIRRKIRKKK 273 (274)
T ss_pred cHHHHHHHHHHHHHHHHhcceeEeEEcHHHHHHHHhcc
Confidence 33333344444667788999999999999999998753
No 14
>KOG4220|consensus
Probab=99.71 E-value=7e-18 Score=156.44 Aligned_cols=112 Identities=18% Similarity=0.280 Sum_probs=106.0
Q ss_pred CcccccccccchHhHHHHHhhHhhhccchhHHHHHHHhcCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeee
Q psy11022 369 PYRSIIHITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRL 448 (492)
Q Consensus 369 ~~~~~l~~~~~~~~~~la~~D~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai 448 (492)
.-+..+++..|+|+.+||+||+..|++.+|........| .|+.|...|.++..++....-+|+++|..||+|||..|
T Consensus 56 KvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg---~W~LG~~~CdlWLalDYvaSNASVmNLLiISFDRYFsV 132 (503)
T KOG4220|consen 56 KVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMG---YWPLGPLVCDLWLALDYVASNASVMNLLIISFDRYFSV 132 (503)
T ss_pred EecceeeeecceeehHHHHhhhhhheeechHHHHHHHHc---ccccchHHHHHHHHHHHHhhhhhhhhhheeeeecceee
Confidence 345688999999999999999999999999999999999 89999999999999999999999999999999999999
Q ss_pred eccCcccceeehhHHHHHHHHHHHHHHHHhhhccc
Q psy11022 449 CMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFE 483 (492)
Q Consensus 449 ~~p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~ 483 (492)
.+||.|+...|++++..||+++|++|+++..|-..
T Consensus 133 TrPLtYrakRTtkrA~~MI~~AW~iSfiLWaPaIl 167 (503)
T KOG4220|consen 133 TRPLTYRAKRTTKRAGLMIGAAWVLSFVLWAPAIL 167 (503)
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998876553
No 15
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.69 E-value=8.4e-17 Score=151.62 Aligned_cols=262 Identities=13% Similarity=0.192 Sum_probs=176.2
Q ss_pred HHhhhcceeeeeeeeccc----cccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCC-ccccccccchhhHHHHHHHH
Q psy11022 53 LGSVGNGYMISSVMIEDH----LRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQ-AEPIKEIMCHVQWFLTLLCS 127 (492)
Q Consensus 53 ~gl~gN~~vi~~i~~~~~----lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~-~~~~~~~~C~~~~~~~~~~~ 127 (492)
+.+.-...++.++.+.|+ ++++.+.++.+.+++|++..+...............+ ....++..-++.........
T Consensus 7 ~tlply~~il~~l~~~r~~~~~~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~y~~~ 86 (283)
T PF10323_consen 7 VTLPLYIFILYCLLKLRKRSKTFKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSYQTYYAAIYYNIAYYFL 86 (283)
T ss_pred ehHHHHHHHHHHHHHcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 344445555555555443 5678899999999999998865444433333211111 11223333556666777778
Q ss_pred HHHHHHHHHHHHHHHHHHhcCc-ccccccchhhHHhHhhHHHHHHHHHhhhhhhhcc-----cccccccccccchhHHHH
Q psy11022 128 LVTVWTLAMIAMENYVRLCMPP-ECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKV-----GPDYCSKKVSYMELYQGI 201 (492)
Q Consensus 128 ~~s~~~l~~ia~dRy~aI~~P~-~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~-----~~~~C~~~~~~~~~~~~~ 201 (492)
.......+++|++||.||++|. ++.+..++.+.+.++++-|+.++++++|.+...+ .+..=....+........
T Consensus 87 ~~~~~gi~lls~nR~~ai~~P~~~~~~~~~~~~~~~i~~i~wi~p~li~~~~~~~~~~~f~~~~~~~~~~d~~~~~~~~~ 166 (283)
T PF10323_consen 87 YIQCIGIVLLSLNRYLAICFPTSRHTKFWQPAKIWIIILIQWIPPLLISLPFFFDTDFYFDNEENMSLFVDPEFIQRNFL 166 (283)
T ss_pred HHHHHhHHHHHHhhhheEEeecHHHhhhccccchhheeeeeehhhhhheeeeeccCceeeecccceeeecCHHHHHHHHH
Confidence 8899999999999999999998 7777889999999999999999999988543211 111000001111223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHhHhHHHHHHHHhccCCcchHH
Q psy11022 202 IGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQITPSF 281 (492)
Q Consensus 202 ~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~~~~~~~~~~~~~~ 281 (492)
.......+..+..+++|..+...+||+.++..++.+++.++|.+.+.+..+...++++...-+......... .......
T Consensus 167 ~~~~~~~~~cv~~iv~Y~~i~~~iRk~~k~~s~~~s~~~~rE~~L~~~~~i~~~a~~~~~~~~~~~~~~~~~-~~~~~~~ 245 (283)
T PF10323_consen 167 IAFIFVSVTCVICIVCYGIIFIFIRKRNKKKSKSSSRSRRREIRLAIQVFILFCAFFVILVYYIFSNYFAQN-FNTDPIF 245 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccchHHH
Confidence 444666677888899999999999988765555566777888888888877777666655444433333332 2222122
Q ss_pred H---HHHHHHhhcccccchhhhhcChHHHHHHHHHhc
Q psy11022 282 Y---YLAWLALSKSCINSVLYCISNRHFRNAYINLFH 315 (492)
Q Consensus 282 ~---~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~~ 315 (492)
+ ....+....|.+||+.-.+.|+++|+++++.++
T Consensus 246 ~~r~~y~~~~~~~s~inP~~LLi~n~~lr~~~~~~~~ 282 (283)
T PF10323_consen 246 YLRAFYPILNGLLSFINPWMLLIFNKDLRKQVRRMLK 282 (283)
T ss_pred HHHHHHHHHHHHHHhhhhHHhhhccHHHHHHHHHHcC
Confidence 2 334566788999999999999999999999875
No 16
>PHA03234 DNA packaging protein UL33; Provisional
Probab=99.62 E-value=9.3e-16 Score=148.36 Aligned_cols=106 Identities=15% Similarity=0.122 Sum_probs=87.7
Q ss_pred ccccccchHhHHHHHhhHhhhccchhHHHHHHHhcCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeeccC
Q psy11022 373 IIHITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPP 452 (492)
Q Consensus 373 ~l~~~~~~~~~~la~~D~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~p~ 452 (492)
++|+++|+++.|||+||+++++ ..|+.+... .+ .|++|+..|++.+++...+.++|+++|++||+|||.||+||.
T Consensus 64 ~~rt~tn~fi~NLAvaDLL~~l-~lp~~~~~~-~~---~w~fG~~lCk~~~~~~~~~~~~Si~~L~~ISiDRY~aIv~p~ 138 (338)
T PHA03234 64 AKHNATSFYLITLFASDFLHML-CVFFLTLNR-EA---LFNFNQAFCQCVLFIYHASCSYSICMLAIIATIRYKTLHRRK 138 (338)
T ss_pred ccccHHHHHHHHHHHHHHHHHH-HHHHHHHHH-hC---CccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHeeeechh
Confidence 4688999999999999999975 556554432 33 599999999999999999999999999999999999999999
Q ss_pred cccceeehhHHHHHHHHHHHHHHHHhhhccccc
Q psy11022 453 ECYTFFSKSHIILSVIMIWLVSILLTTLQFEKS 485 (492)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~ 485 (492)
+++. +++++...++++|+.+++.++|++...
T Consensus 139 ~~~~--~~~~~~~~i~~~Wi~s~l~~~P~l~~~ 169 (338)
T PHA03234 139 KNDK--KNNHIGRNIGILFLASAMCAIPAALFV 169 (338)
T ss_pred hhhh--hhhhHHHHHHHHHHHHHHHHhhHhHee
Confidence 7642 344555666777999999999987543
No 17
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=99.58 E-value=2.2e-13 Score=129.44 Aligned_cols=273 Identities=14% Similarity=0.172 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcceeeeeeeecc---ccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCcccccccc
Q psy11022 39 NRVARLLITTGLSVLGSVGNGYMISSVMIED---HLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIM 115 (492)
Q Consensus 39 ~~~~~~~~~~~~~i~gl~gN~~vi~~i~~~~---~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~ 115 (492)
.+.+..++..+..++|++||+.++.+-..+. +.-+|.+..+.+||+++++.............+... ....+..
T Consensus 5 ~~~i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~~---~~~~~~~ 81 (303)
T PF05296_consen 5 LEIIFLIILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSFLSFFFPN---IYFSENV 81 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch---hhhhhhH
Confidence 4567788888999999999999998876542 223488999999999999988655544444443332 2344556
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchh----hHHhHhhHHHHHHH--HHhhhhhhhcc-c---c
Q psy11022 116 CHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKS----HIILSVIMIWLVSI--LLTTLQFIYKV-G---P 185 (492)
Q Consensus 116 C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~----~~~~~i~~~w~~s~--~~~~~~~~~~~-~---~ 185 (492)
++...++..+....|.|..+++++--++.|+..-+.--..=++ .+..++.+.++.++ ....|...... + .
T Consensus 82 ~~~~~~~~~f~~~~s~W~tt~LsvfYcvKI~~fs~~~Fl~LK~rI~~~v~~lLl~s~l~s~~~~~~~~~~~~~~~~~~~~ 161 (303)
T PF05296_consen 82 YKIIDFLWMFSNSSSLWFTTWLSVFYCVKIANFSHPFFLWLKRRISKVVPWLLLGSLLISFLNLLSIPLFIDNHINNNNT 161 (303)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHheeeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeeccccc
Confidence 8888999999999999999999999999998763211111222 23345566677777 33333332211 0 1
Q ss_pred cccccc-----cccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC----cccchhhHHHHHHHHHHH
Q psy11022 186 DYCSKK-----VSYM-ELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPP----VIFGWDYSLMLTNMYSYI 255 (492)
Q Consensus 186 ~~C~~~-----~~~~-~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 255 (492)
..+... .+.. ..+......+...+|++++.++...+...++||.++.+++.+ .+.+.+.|+.|++....+
T Consensus 162 ~~~~N~t~~~~~~~~~~~~~~~~~~~~~~lPf~i~l~s~~lli~SL~rH~r~M~~n~~g~~~ps~~aH~~a~k~~~sfl~ 241 (303)
T PF05296_consen 162 NNSRNSTSNFQESKSSYFYFFILFNLGSFLPFLIFLVSSILLIFSLWRHMRRMQKNATGFRDPSTEAHIRAIKTMISFLI 241 (303)
T ss_pred cCCCcceEEeecchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHHHHHHHHHHHH
Confidence 111111 1111 122222334788999999999999999888888776554443 344566777777777766
Q ss_pred HHHHHhHhHHHHHHHHhccCCcchHHHHHHHHHhhcccccchhhhhcChHHHHHHHHHhc
Q psy11022 256 MFIVLWIPFCIVMSVASFRHQITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFH 315 (492)
Q Consensus 256 ~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~~ 315 (492)
.|.++++-..+ .......+.......+...+....+..+|+|..+.|+++|+++++.+.
T Consensus 242 ly~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~yps~hs~iLIlgn~KLr~~~~~il~ 300 (303)
T PF05296_consen 242 LYIIYFLSLIL-SFLSFFFPENSIWFWVCEIIIALYPSGHSIILILGNPKLRQALLKILW 300 (303)
T ss_pred HHHHHHHHHHH-HHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHh
Confidence 66665544332 122222344455566777788899999999999999999999999884
No 18
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=99.55 E-value=4.2e-13 Score=125.88 Aligned_cols=254 Identities=17% Similarity=0.168 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHHHhhhcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCccccccccchhhHH
Q psy11022 42 ARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWF 121 (492)
Q Consensus 42 ~~~~~~~~~~i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~ 121 (492)
....+..+.++++++|-++++..++..|++|++.+-++.-++++|++..+..+... .... ...++..|.++++
T Consensus 8 ~~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~~---~~~~----~~~~s~lC~~Qaf 80 (303)
T PF05462_consen 8 TLYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIMT---LSPS----AGENSFLCQFQAF 80 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHH---hccc----CCCCCcchhhHhH
Confidence 45566667789999999999999999999999999999999999998774333221 1111 2345667999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhh---cccccccccccccchhH
Q psy11022 122 LTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIY---KVGPDYCSKKVSYMELY 198 (492)
Q Consensus 122 ~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~---~~~~~~C~~~~~~~~~~ 198 (492)
+..+...++.+-.++||++=|+.+++... ..+|.-+...+.+|.++++.+..++.. +.....|+...+. ..+
T Consensus 81 liq~f~~as~lWt~~iA~nly~~~~~~~~----~~~k~e~~Y~l~~wGiPli~a~i~l~~~~~g~~G~WCWI~~~~-~~~ 155 (303)
T PF05462_consen 81 LIQFFMLASFLWTLCIAFNLYLTFVKRYD----ELEKLEKYYHLVCWGIPLIPAVIPLIGNDYGPAGNWCWIKPEW-DVW 155 (303)
T ss_pred HHHHhhHHHHHHHHHHHHHhhheeEEcCc----cHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCceeecCCC-cch
Confidence 99999999999999999999999987522 235555667889999999887766543 3344579887543 222
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHhHhHHHHHHHHhcc
Q psy11022 199 QGIIGSLFFFIPIIITCI----LYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFR 274 (492)
Q Consensus 199 ~~~~~~~~~~ip~~ii~~----~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~~~~~~~ 274 (492)
.. ..+.+|+.++.. .+....+...+..+. ....+++++.|...-+..-.++|++||.|..+..+.....
T Consensus 156 r~----~lfY~Pl~ii~~~~~ilv~i~~~~~y~~~~~---~~sd~~~~~~~~~~kL~~Yp~ifiicw~fa~INRI~~~~~ 228 (303)
T PF05462_consen 156 RF----ALFYIPLWIIIIISAILVGITMRYIYRVIRN---GVSDNKDKHLKYQLKLVNYPLIFIICWIFATINRIYNFIG 228 (303)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22 233444332222 122222222221111 1111122223333335567789999999999999998886
Q ss_pred CCcchHHHHHHHHHhhcccccchhhhhcChHHHHHHHHHh
Q psy11022 275 HQITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLF 314 (492)
Q Consensus 275 ~~~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~ 314 (492)
+.+......-..+.-++..+|.++|++.|+.+++.+...+
T Consensus 229 ~~~~~l~~Lh~~~s~lqGf~nsivy~~n~~~~~~~~~~~~ 268 (303)
T PF05462_consen 229 KNPFWLSVLHVGFSPLQGFFNSIVYGYNNSLMWRYLGSKI 268 (303)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 6555544444567778889999999999998888877655
No 19
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.54 E-value=3.6e-13 Score=127.09 Aligned_cols=271 Identities=10% Similarity=0.047 Sum_probs=181.5
Q ss_pred chHHHHHHHHHHHHHHHHhhhcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCccccccccc
Q psy11022 37 DWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMC 116 (492)
Q Consensus 37 ~~~~~~~~~~~~~~~i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C 116 (492)
+..+...++.+.+.+++-.+.++.++.++.+++..|.+.+-++.-||+.|+......-...-.....+.. +--.+..=
T Consensus 29 g~~~p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~~si~tG~l~i~G~v--fC~~P~~~ 106 (313)
T PF10321_consen 29 GVKRPILGIYFLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFINSIITGILAIFGAV--FCSYPRFI 106 (313)
T ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHhhhhhhhHHHhcCcc--ccCCchHh
Confidence 4456788999999999999999999999888777778999999999999999874432222222222211 11111112
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHH--hhhhhhhcccccccccc---
Q psy11022 117 HVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILL--TTLQFIYKVGPDYCSKK--- 191 (492)
Q Consensus 117 ~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~--~~~~~~~~~~~~~C~~~--- 191 (492)
.+.+.+...+..++...-..+++||..-+..|......+..+++...+.+..++++.. -.++..++.+...-..+
T Consensus 107 ~i~G~~~~~~W~~~c~~~i~LainR~~~l~~~~~~~~~F~g~~~~~~l~~~~iY~~y~~~fT~pv~Fns~~~sw~fDP~i 186 (313)
T PF10321_consen 107 YIMGCIALGSWCGSCIICILLAINRCCELNFPFKLKFLFEGKRTYIVLFLPIIYGFYFSFFTPPVLFNSEYMSWFFDPMI 186 (313)
T ss_pred hhhhccchhhHHHHHHHHHHHHHHHHHHHhcchhhHHhhcCceEEeeehhHHHHHHHHHHHcCcccCCCCcceEecCccc
Confidence 3345556677888999999999999999999865555666666555444443333322 23555544433221111
Q ss_pred --cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHhHhHHHHHH
Q psy11022 192 --VSYMELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMS 269 (492)
Q Consensus 192 --~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~~ 269 (492)
.+..+.|....-....++-.+.+.++|..+...++++++.. ...+..|.+++...+..++.+...+.++-+.
T Consensus 187 ~~g~~~~~Y~N~~~~~nN~~~~~~t~~lY~~l~~~l~~k~~~~--~s~~~~k~~~qI~iQs~iIC~f~~i~a~iyv---- 260 (313)
T PF10321_consen 187 FEGKSPELYSNIPHTFNNIIVVICTTFLYIYLCYYLIKKSKYS--TSSQLSKAQRQIFIQSVIICFFHAIAAVIYV---- 260 (313)
T ss_pred cCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cchhhhhhhHHHHHHHHHHHHHHHHHHHHHH----
Confidence 11223355555566677778889999999999998876544 3334455566666666666666665544443
Q ss_pred HHhccCCcchHHHHHHHHHhhcccccchhhhhcChHHHHHHHHHhc
Q psy11022 270 VASFRHQITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFH 315 (492)
Q Consensus 270 ~~~~~~~~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~~ 315 (492)
...+.+.+++..........+++..+|+||...||..|++++++++
T Consensus 261 ~m~f~~~p~~~i~~~~~~Wql~~g~~~iIYl~lNrtIR~~~~k~~~ 306 (313)
T PF10321_consen 261 YMQFFPPPPWLIIIGQISWQLSHGCPPIIYLTLNRTIRNSVLKMLG 306 (313)
T ss_pred eeeeecccHHHHHHHHHHHhccCCccceEEEEECHHHHHHHHHHHc
Confidence 2333455667777778899999999999999999999999999985
No 20
>PHA02834 chemokine receptor-like protein; Provisional
Probab=99.54 E-value=1.3e-14 Score=140.19 Aligned_cols=103 Identities=16% Similarity=0.250 Sum_probs=88.5
Q ss_pred ccccchHhHHHHHhhHhhhccchhHHHHHHHhcCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeeccCcc
Q psy11022 375 HITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPEC 454 (492)
Q Consensus 375 ~~~~~~~~~~la~~D~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~p~~~ 454 (492)
+++.|+++.|||++|+++ .+.+|+.+... .+ +|.+|+..|++.+++...+..+|++++++||+|||.+|+||+++
T Consensus 59 ~~~~n~~i~nLAiaDll~-~~~lP~~i~~~-~~---~w~~g~~~C~~~~~~~~~~~~~Si~tL~~IsidRY~aI~~P~~~ 133 (323)
T PHA02834 59 MFVVDVYLFNIAMSDLML-VFSFPFIIHND-LN---EWIFGEFMCKLVLGVYFVGFFSNMFFVTLISIDRYILVVNATKI 133 (323)
T ss_pred cchhhhhhHHHHHHHHHH-HHHHHHHHHHH-cC---CcCCcchHHHhHHHHHHHHHHHHHHHHHHHHHHHhhheeCchhc
Confidence 346799999999999986 66889876543 34 58999999999999999999999999999999999999999986
Q ss_pred cceeehhHHHHHHHHHHHHHHHHhhhccc
Q psy11022 455 YTFFSKSHIILSVIMIWLVSILLTTLQFE 483 (492)
Q Consensus 455 ~~~~~~~~~~~~~~~~W~~~~~~~~~~~~ 483 (492)
+. .+.+++...++.+|+.|+++++|++.
T Consensus 134 ~~-~~~~~~~~~i~~iWi~s~l~~~P~~~ 161 (323)
T PHA02834 134 KN-KSISLSVLLSVAAWVCSVILSMPAMV 161 (323)
T ss_pred cC-CccchHHHHHHHHHHHHHHHHhhHHH
Confidence 54 45677888889999999999998864
No 21
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=99.52 E-value=1.4e-14 Score=135.18 Aligned_cols=110 Identities=22% Similarity=0.416 Sum_probs=101.6
Q ss_pred cccccccchHhHHHHHhhHhhhccchhHHHHHHHhcCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeecc
Q psy11022 372 SIIHITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMP 451 (492)
Q Consensus 372 ~~l~~~~~~~~~~la~~D~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~p 451 (492)
.++|++.++++.|||++|++.++...|........+ .|..++..|++..++...+...|.++++++++|||.+|++|
T Consensus 13 ~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~---~~~~~~~~C~~~~~~~~~~~~~s~~~~~~is~dRy~~i~~p 89 (257)
T PF00001_consen 13 KRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFD---DWIFSSFLCRIFGFLFYFSSFSSIFSLVAISIDRYLAICHP 89 (257)
T ss_dssp GGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHS---SCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH
T ss_pred ccCCChhHHHHHHHHHHHHhhccccccccccccccc---ccccccccccccccccccccccccccccccccccccccccc
Confidence 466789999999999999999999999888877776 68899999999999999999999999999999999999999
Q ss_pred CcccceeehhHHHHHHHHHHHHHHHHhhhcccc
Q psy11022 452 PECYTFFSKSHIILSVIMIWLVSILLTTLQFEK 484 (492)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~ 484 (492)
++|++..+++++...++++|+.++++++|++..
T Consensus 90 ~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~ 122 (257)
T PF00001_consen 90 LRYRRIRTRRRARIIIILIWIISFLISLPPLFF 122 (257)
T ss_dssp HTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999998644
No 22
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=99.51 E-value=2.4e-14 Score=142.35 Aligned_cols=107 Identities=16% Similarity=0.281 Sum_probs=95.7
Q ss_pred cccccccchHhHHHHHhhHhhhccchhHHHHHHHhcCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeecc
Q psy11022 372 SIIHITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMP 451 (492)
Q Consensus 372 ~~l~~~~~~~~~~la~~D~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~p 451 (492)
.++|++++++++|||++|++. ++..|+.+... .+ .|.+|+..|++..++...+.++|++++++|++|||+||+||
T Consensus 126 k~lrt~t~i~llnLAisDLl~-~l~lPf~i~~~-~~---~W~fg~~~Ck~~~~l~~~~~~~Si~~L~~isiDRYlaIv~p 200 (417)
T PHA02638 126 KKIKTITDIYIFNLAISDLIF-VIDFPFIIYNE-FD---QWIFGDFMCKVISASYYIGFFSNMFLITLMSIDRYFAILYP 200 (417)
T ss_pred ccCCCHhHHHHHHHHHHHHHH-HHHHHHHHHHH-hc---cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 367888999999999999987 46889877654 34 69999999999999999999999999999999999999999
Q ss_pred CcccceeehhHHHHHHHHHHHHHHHHhhhccc
Q psy11022 452 PECYTFFSKSHIILSVIMIWLVSILLTTLQFE 483 (492)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~ 483 (492)
.++++..+++++...++++|++++++++|++.
T Consensus 201 ~~~~~~~~~~~~~i~~~~iW~~s~l~slP~~~ 232 (417)
T PHA02638 201 ISFQKYRTFNIGIILCIISWILSLIITSPAYF 232 (417)
T ss_pred ccccceecHhhhHhhHhHHHHHHHHHHHHHHH
Confidence 99887778888888999999999999999874
No 23
>PHA03235 DNA packaging protein UL33; Provisional
Probab=99.44 E-value=1.2e-13 Score=136.65 Aligned_cols=102 Identities=18% Similarity=0.147 Sum_probs=84.7
Q ss_pred ccccchHhHHHHHhhHhhhccchhHHHHHHHhcCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeeccCcc
Q psy11022 375 HITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPEC 454 (492)
Q Consensus 375 ~~~~~~~~~~la~~D~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~p~~~ 454 (492)
++..++|+.|||++|+++ ++.+|+.+.. +.+ .|..|...|++.+++...++.+|+++|++||+|||.+|++|.++
T Consensus 66 ~~~~~~~I~NLAvsDLl~-l~~lP~~i~~---~~~-~~~~g~~~Ck~~~~l~~~~~~~Si~tL~~ISiDRY~aI~~p~~~ 140 (409)
T PHA03235 66 FSTPTLYMTNLYLANLLT-VFVLPFIMLS---NQG-LLSGSVAGCKFASLLYYASCTVGFATVALIAADRYRVIHQRTRA 140 (409)
T ss_pred CCccHHHHHHHHHHHHHH-HHHHHHHHHh---cCc-cccCCCCeehhHHHHHHHHHHHHHHHHHHHHHHHHHHeechhhc
Confidence 356689999999999987 5678876542 211 23345789999999999999999999999999999999999865
Q ss_pred cceeehhHHHHHHHHHHHHHHHHhhhcc
Q psy11022 455 YTFFSKSHIILSVIMIWLVSILLTTLQF 482 (492)
Q Consensus 455 ~~~~~~~~~~~~~~~~W~~~~~~~~~~~ 482 (492)
. ..+++++...++++|+.|+++++|+.
T Consensus 141 ~-~~~~~~a~~ii~~iWi~sll~s~P~~ 167 (409)
T PHA03235 141 R-SSAYRSTYKILGLTWFASLICSGPAP 167 (409)
T ss_pred c-CcccchhhhhHHHHHHHHHHHHHHHH
Confidence 4 35688999999999999999999864
No 24
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=99.42 E-value=3.4e-13 Score=131.53 Aligned_cols=108 Identities=17% Similarity=0.237 Sum_probs=96.9
Q ss_pred ccccccchHhHHHHHhhHhhhccchhHHHHHHHhcCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeeccC
Q psy11022 373 IIHITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPP 452 (492)
Q Consensus 373 ~l~~~~~~~~~~la~~D~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~p~ 452 (492)
+.|++.++++.|||++|++.++ ..|........+ .|.+|+..|++..++......+|++++++||+|||.+|++|+
T Consensus 69 ~~~~~~~~ll~~laisDll~~~-~~~~~~~~~~~~---~~~~~~~~C~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~p~ 144 (335)
T PHA03087 69 KIKTPMDIYLLNLAVSDLLFVM-TLPFQIYYYILF---QWSFGEFACKIVSGLYYIGFYNSMNFITVMSVDRYIAIVHPV 144 (335)
T ss_pred cccCchHHHHHHHHHHHHHHHH-hHHHHHHHHhCC---CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 7889999999999999998755 567666555555 688999999999999999999999999999999999999999
Q ss_pred cccceeehhHHHHHHHHHHHHHHHHhhhcccc
Q psy11022 453 ECYTFFSKSHIILSVIMIWLVSILLTTLQFEK 484 (492)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~ 484 (492)
+|....+++++...++++|+.+++.++|++..
T Consensus 145 ~~~~~~~~~~~~~~~~~iWl~~~~~~~p~~~~ 176 (335)
T PHA03087 145 KSNKINTVKYGYIVSLVIWIISIIETTPILFV 176 (335)
T ss_pred ccccccchhhhHHHHHHHHHHHHHHhccHhhe
Confidence 99999999999999999999999999888653
No 25
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=99.19 E-value=1.6e-10 Score=105.59 Aligned_cols=234 Identities=13% Similarity=0.125 Sum_probs=162.5
Q ss_pred ccccchhhHHHHHHHHHHHhhhc-hhcHHHHHHHhcCCCccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-c
Q psy11022 70 HLRRRGNTYIAVEALADLLVSGV-VIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLC-M 147 (492)
Q Consensus 70 ~lr~~~~~~l~~Lai~Dll~~~~-~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~-~ 147 (492)
+..+|.+..+.+||+++++..+. .+|.... ..+.. .+++..||...++...+-..|+.+.++++. |.||. .
T Consensus 6 ~r~kp~dlIl~hLa~aN~lvLl~rGip~~~~--~~~~~---~~~d~gCK~v~Y~~RV~RglSictTCLLSv--fQAItIS 78 (265)
T PF03402_consen 6 HRLKPIDLILIHLALANILVLLSRGIPQTMA--FFGWK---FFDDIGCKIVFYIYRVARGLSICTTCLLSV--FQAITIS 78 (265)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHhhHHHHHH--Hhhcc---cCCCceeeeeeeehHHhchhhHHhhhHHHH--HhhEEEe
Confidence 33578999999999999988754 5564322 22221 358899999999999999999999999999 55665 4
Q ss_pred Cccccc----ccchhhHHhHhhHHHHHHHHHhhhhhhh--c----------ccccccccccccchhHH--HHHHHHHHHH
Q psy11022 148 PPECYT----FFSKSHIILSVIMIWLVSILLTTLQFIY--K----------VGPDYCSKKVSYMELYQ--GIIGSLFFFI 209 (492)
Q Consensus 148 P~~~~~----~~t~~~~~~~i~~~w~~s~~~~~~~~~~--~----------~~~~~C~~~~~~~~~~~--~~~~~~~~~i 209 (492)
|-.... ....+.....+...|++.+++....... . ...++|.....+..... .....+--++
T Consensus 79 P~~s~w~~lK~k~pk~i~~~~~~~Wilnlli~~~~~~~~~~~~n~t~~~~~~~~~yCs~~~~~~~~~~~~~~~~~~~D~~ 158 (265)
T PF03402_consen 79 PSNSRWAELKVKAPKYIGPSCLFCWILNLLININVLVYIIATPNSTNNNFTYSLGYCSSVPISYIVSSLFATLLSFRDVL 158 (265)
T ss_pred cCCchhhhhhhhcCCccccHHHHHHHHHHhhhcceeEEEEecCccccCceeecCCeEEEEecchhhhhhhhhHHHhhHHH
Confidence 522111 1333455666778899988776532221 1 12346765533322222 2222344467
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCC----CcccchhhHHHHHHHHHHHHHHHHhHhHHHHHHHHhccCCcchHHHHHH
Q psy11022 210 PIIITCILYMKITYKVRLARQNPSFKP----PVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQITPSFYYLA 285 (492)
Q Consensus 210 p~~ii~~~y~~i~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~ 285 (492)
.+.+|..+.+.+...+.||+++.+.-+ ..+...|.|+++++++.+..|+..+....+...+.........+.....
T Consensus 159 fvgLM~~aSgyMV~~L~RH~q~VqhIhs~~~s~r~SpE~RAtktILlLVs~FV~fY~l~si~~~~~~~~~~~~~~~~~~~ 238 (265)
T PF03402_consen 159 FVGLMIWASGYMVFLLYRHHQQVQHIHSSSLSPRSSPETRATKTILLLVSTFVSFYGLSSILFIYLTSFKNSPWLLNISV 238 (265)
T ss_pred HHHHHHhhhhhheeeeeecccccccCcCCCCCCCCChhHHHhCeEeeHHHHHHHHHhHHHHHHHHHHHhcCCcceeEHHH
Confidence 778888888888888988877654333 3445679999999999999999999888776655444333444455667
Q ss_pred HHHhhcccccchhhhhcChHHHHHH
Q psy11022 286 WLALSKSCINSVLYCISNRHFRNAY 310 (492)
Q Consensus 286 ~l~~~~s~~nP~IY~~~~~~~R~~~ 310 (492)
++....+++-|++....++++.+.+
T Consensus 239 ~ls~cfptisPfvLI~~d~~i~~~~ 263 (265)
T PF03402_consen 239 FLSSCFPTISPFVLISSDKRIIKFL 263 (265)
T ss_pred HHhHHhHhhChHHhhccCchHHHHh
Confidence 8888999999999999999887754
No 26
>KOG2087|consensus
Probab=99.14 E-value=1.2e-10 Score=107.96 Aligned_cols=112 Identities=20% Similarity=0.245 Sum_probs=94.9
Q ss_pred cccchHhHHHHHhhHhhhccchhHHHHHHHhcC----cCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeecc
Q psy11022 376 ITGNTYIAVEALADLLVSGVVIPVSAVMILAGI----KQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMP 451 (492)
Q Consensus 376 ~~~~~~~~~la~~D~~~~~~~~p~~~~~~~~~~----~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~p 451 (492)
++...++.|||++|+++|+...-+...+....+ +..||-....|++.||+..++.+.|++.|+.+++||++.|++|
T Consensus 57 ~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~ai~W~tg~gC~~aGflavFASElSv~~LT~itlEr~l~i~~p 136 (363)
T KOG2087|consen 57 NSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYKHAIDWQTGLGCPVAGFLAVFASELSVFLLTLITLERWLSITYP 136 (363)
T ss_pred cchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhheecc
Confidence 377889999999999999988887777664322 1246777789999999999999999999999999999999999
Q ss_pred CcccceeehhHHHHHHHHHHHHHHHHhhhcccccee
Q psy11022 452 PECYTFFSKSHIILSVIMIWLVSILLTTLQFEKSIY 487 (492)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~ 487 (492)
++-.+.-..|..+....+.|+.+++.++.|..++.+
T Consensus 137 ~~~~~~~~lr~~~~ill~~wl~~~l~A~~Pl~g~s~ 172 (363)
T KOG2087|consen 137 FRLDRKAKLRPLVLILLLGWLFAFLMALLPLFGISS 172 (363)
T ss_pred ccCCCcccccHHHHHHHHHHHHHHHHHhccccCCCC
Confidence 997776666779999999999999999977755443
No 27
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=99.06 E-value=8.6e-09 Score=98.10 Aligned_cols=259 Identities=17% Similarity=0.194 Sum_probs=167.3
Q ss_pred HHHHHHHHHHhhhcceeeeeeeec-cccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCC--------cccccccc
Q psy11022 45 LITTGLSVLGSVGNGYMISSVMIE-DHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQ--------AEPIKEIM 115 (492)
Q Consensus 45 ~~~~~~~i~gl~gN~~vi~~i~~~-~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~--------~~~~~~~~ 115 (492)
++..+.+.+|++.|.++++.+.++ ++.-+...+++.|-|++|++.+....... ......... --.+|+..
T Consensus 3 i~~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~~~~q-~R~i~~~~~~~~~~~GpC~~~~~~~ 81 (292)
T PF10317_consen 3 IYHPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISAFLTQ-PRIIPNGTSIAVISYGPCRYFGPWF 81 (292)
T ss_pred EeHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhccCCCCcEEEEeeecceecCcHH
Confidence 356778899999999999877654 34345667899999999999884333322 222222111 12346677
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhccc-----------
Q psy11022 116 CHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKVG----------- 184 (492)
Q Consensus 116 C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~----------- 184 (492)
|.....+...+...+.+.+.+--..||..+.++-. ++++....++..+..++...........+
T Consensus 82 C~~~y~~~~~~~~~s~~~i~~sf~yRy~iL~~~~~-----~~~~~i~~~~l~~~p~~~~~i~~~~~~~~~~~~~~~~~~~ 156 (292)
T PF10317_consen 82 CFFCYHIMLHFSIHSGWSIILSFYYRYYILRNPSP-----SRKRIIFICILIYIPSFSMLIFFFFSPTDSEPVEAELNQF 156 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----chhHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHh
Confidence 88888888888899999999999999999988722 56666777777777777665543321110
Q ss_pred -cccc----cccc-ccchhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccchhhHHHHHHHHHH
Q psy11022 185 -PDYC----SKKV-SYMELYQGIIGS----LFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSY 254 (492)
Q Consensus 185 -~~~C----~~~~-~~~~~~~~~~~~----~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (492)
+++- .... .+.......... .......+++.++--++.+.++++ ..+..+++++.+++..|.+.+..
T Consensus 157 ~p~y~~~~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~R~ki~~~L~~~---~~~~S~~tk~~h~~lv~~Lt~Q~ 233 (292)
T PF10317_consen 157 HPEYNLENYSISGFSDISSPPSLINILIMTIPIFPIPIVIFFLRRKILKFLNKK---SSSMSERTKSMHRQLVKGLTIQA 233 (292)
T ss_pred CcccccccceeeeecchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh---hhhcCHHHHHHHHHHHHHHHHHH
Confidence 1110 0000 000111111111 111112223333444444444442 23444556677888999999999
Q ss_pred HHHHHHhHhHHHHHHHHhc-cCCcchHHHHHHHHHhhcccccchhhhhcChHHHHHHHH
Q psy11022 255 IMFIVLWIPFCIVMSVASF-RHQITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYIN 312 (492)
Q Consensus 255 ~~f~i~~~P~~i~~~~~~~-~~~~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~ 312 (492)
..=.++..|.....++... ........+....+..+.+.+||++....-+.+|++++|
T Consensus 234 ~lP~~~~~p~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~P~itl~fv~PYR~~i~r 292 (292)
T PF10317_consen 234 LLPLFFYIPGVIIYFLSQFTGYEHPFLEYLIFMLASLPPLIDPLITLYFVRPYRKAILR 292 (292)
T ss_pred HhHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhchHhheeeeHhHHHHhcC
Confidence 9999999988877777666 455566667777788899999999999999999999864
No 28
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=98.86 E-value=4.3e-08 Score=86.96 Aligned_cols=158 Identities=17% Similarity=0.174 Sum_probs=108.0
Q ss_pred cccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy11022 69 DHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMP 148 (492)
Q Consensus 69 ~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P 148 (492)
+++|.-.+.++.||.++|++.++..+.........+. -..++..|..++++......++-+...+||++-|+.|.+|
T Consensus 30 ~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l~~~~---i~~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~v~~~ 106 (201)
T PF11710_consen 30 YRRRSFRHQLILNLLLADFIQALAFLISPIRWLARGG---IIAPSPFCQAQGFFLQVGDEASDLWILAIAIHTFLIVFRP 106 (201)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---eeCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4445666779999999999999665553443333221 2345677999999999999999999999999999999999
Q ss_pred ccccc---------ccchhhHHhHhhHHHHHHHHHhhhh---hhhcccccccccccccchhHHHHHHHHHHHHHHHHHHH
Q psy11022 149 PECYT---------FFSKSHIILSVIMIWLVSILLTTLQ---FIYKVGPDYCSKKVSYMELYQGIIGSLFFFIPIIITCI 216 (492)
Q Consensus 149 ~~~~~---------~~t~~~~~~~i~~~w~~s~~~~~~~---~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~ip~~ii~~ 216 (492)
-...+ ...+..+.....+.|++...++... -.+......|....++ ..+.....-+--.+..+.+++
T Consensus 107 ~~~~~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~la~i~~~~~~Y~~~g~WCWi~~~~-~~~Rl~l~y~~~~~~~~~~i~ 185 (201)
T PF11710_consen 107 NWKRKRSKNVEGGLYPYRYWVWVIWILVPLLLASLAFIGLGGPGYGPAGAWCWIPSRY-EWYRLWLHYIWRFIIIFAIII 185 (201)
T ss_pred ccccccccccccceEEeeeeeehHHHHHHHHHHHHHHhccccCcccccCcEEEECCCc-HHHHHHHHHHHHHHHHHHHHH
Confidence 21110 1112223333445566655544333 3345566789888665 344555555566667888899
Q ss_pred HHHHHHHHHHHhhc
Q psy11022 217 LYMKITYKVRLARQ 230 (492)
Q Consensus 217 ~y~~i~~~l~~~~~ 230 (492)
.|..++..+||+-+
T Consensus 186 iY~~if~~lrr~~~ 199 (201)
T PF11710_consen 186 IYIAIFFYLRRRIR 199 (201)
T ss_pred HHHHHHHHHhhhhc
Confidence 99999999999754
No 29
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=98.83 E-value=5e-07 Score=86.06 Aligned_cols=265 Identities=11% Similarity=0.053 Sum_probs=171.8
Q ss_pred HHHHHHHHHHHHHHhhhcceeeeeeee-ccccccchhh---HHHHHHHHHHHhhhchhcHHHHHHHhcCCCccccc--cc
Q psy11022 41 VARLLITTGLSVLGSVGNGYMISSVMI-EDHLRRRGNT---YIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIK--EI 114 (492)
Q Consensus 41 ~~~~~~~~~~~i~gl~gN~~vi~~i~~-~~~lr~~~~~---~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~--~~ 114 (492)
.++...+-+++.++++.|.+.++.+.. .+++.+-.++ +-....+.|+-.+++.-|..+.....++...+... +.
T Consensus 9 ~~li~~~~~ig~iS~~~n~~~iyLi~fks~k~~~fry~ll~~Qi~~~l~di~~t~L~qpipLfP~~agy~~G~l~~~f~i 88 (303)
T PF10327_consen 9 QWLINYYHIIGVISFILNSLGIYLIIFKSPKLDNFRYYLLYFQISCTLTDIHLTFLMQPIPLFPIPAGYCVGFLARYFGI 88 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeEEEecCCccchhhHHHHHHHHHHHhhhhhhhhccchhhcceeEEEEEeehhhcCCC
Confidence 356677888899999999999977654 4555543333 23456789999998888988887777654321111 12
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhc-----------c
Q psy11022 115 MCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYK-----------V 183 (492)
Q Consensus 115 ~C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~-----------~ 183 (492)
.+.....+..+......-.+..--+-|..+|.+..+.+ ..++..-........+.+..........+ .
T Consensus 89 ~~h~~~~i~~~l~~~q~~~L~~CF~~KHQaIa~i~~~~-~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~eeq~~yI~~ 167 (303)
T PF10327_consen 89 SSHYLMTIWIFLFIFQIESLVICFLRKHQAIARILSKH-VLPKWFYIFFYFFCILFPFFIFICFYFSGMSREEQMEYIRE 167 (303)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-cCcHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 34444455566666666677777788999999985433 34454444444555555544443322211 1
Q ss_pred cccccccc---------cccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccchhhHHHHHHHH
Q psy11022 184 GPDYCSKK---------VSYM--ELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMY 252 (492)
Q Consensus 184 ~~~~C~~~---------~~~~--~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (492)
+.+.|... ++.. .................+..+++..+++.+++.+++. ..++.+++|++.+.+.+
T Consensus 168 nyP~~~~~F~~l~nf~iY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~L~~~k~~i---S~~ty~kHk~av~SLi~ 244 (303)
T PF10327_consen 168 NYPEYLSWFSSLPNFAIYDFNPWFIFFFILAFFGGFLCFVIFIFLTIDMFRMLKKLKKKI---SKQTYQKHKEAVRSLIA 244 (303)
T ss_pred hCCchhHHHhcCCCEEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CHHHHHHHHHHHHHHHH
Confidence 22223222 1111 1112222334456667777788888888888776433 33467889999999999
Q ss_pred HHHHHHHHhHhHHHHHHHHhc-cCCcchHHHHHHHHHhhcccccchhhhhcChHHHHH
Q psy11022 253 SYIMFIVLWIPFCIVMSVASF-RHQITPSFYYLAWLALSKSCINSVLYCISNRHFRNA 309 (492)
Q Consensus 253 ~~~~f~i~~~P~~i~~~~~~~-~~~~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~ 309 (492)
-.++-.+|-+|..+....... .+...............+|.+|-++..+.++++|+-
T Consensus 245 Q~~~~~i~~~P~~~~~~~~~~~~~~~q~i~~~~~~~f~~HS~~n~ivli~t~ppYR~f 302 (303)
T PF10327_consen 245 QFATSSICILPPFIFVVVVIFEFEDAQVISEICLAIFSSHSSVNMIVLIITTPPYRKF 302 (303)
T ss_pred HHHHHHHHHHHHHHhhhhheecCCCcHHHHHHHHHHHHHhhHhhheeeeEcCcchhhc
Confidence 999989999998887766555 344455555666777899999999999999999984
No 30
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=98.77 E-value=1.8e-06 Score=83.38 Aligned_cols=273 Identities=11% Similarity=0.074 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHHHHHhhhcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHH---HHHhcCCC-cccccccc
Q psy11022 40 RVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAV---MILAGIKQ-AEPIKEIM 115 (492)
Q Consensus 40 ~~~~~~~~~~~~i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~---~~~~~~~~-~~~~~~~~ 115 (492)
-.....+-.+++++|++.++..+..+..++.+|...-+++....++.++.++.-+..... ......+. +...+...
T Consensus 16 l~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~H~N~ril~~~~~~~~l~~~~~r~~~h~~~l~~~~~~~~~Cd~~~~~~~ 95 (324)
T PF10292_consen 16 LRLSLIFNLLLSIIAFPVIIYALWKIRNSKLFHFNTRILFIVHCFSFLIHCTGRIILHTYDLYNYFFPDDPCDMIPSTYR 95 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccchhH
Confidence 344555677788999999988887777777788878888888888888887543333322 22221111 44556677
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhh---h-cccccccccc
Q psy11022 116 CHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFI---Y-KVGPDYCSKK 191 (492)
Q Consensus 116 C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~---~-~~~~~~C~~~ 191 (492)
|........++...+..+..++.+||++|-++.-+|.+ .++.....+..+.|+.++......+. + +....+|...
T Consensus 96 C~~lR~~~~~~~~~~~~t~v~l~IER~iAT~~~~~YE~-~~~~~Gi~l~~~qi~is~~~~~~~~~~~~~~~~~~~yC~~~ 174 (324)
T PF10292_consen 96 CFILRIPYNFGLFLVSFTTVSLVIERTIATFFSKSYEK-SGKWLGILLAFFQILISLLILYFVYSDEDFPNERMYYCQAS 174 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcC-CCccHHHHHHHHHHHHHHHHHHHHHhhhhccCccceeeEEe
Confidence 99999999999999999999999999999999955554 34444455556666666655443332 2 2234578877
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-C--CCcccchhhHHHHHHHHHHHHHHHHhHhHHHHH
Q psy11022 192 VSYMELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSF-K--PPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVM 268 (492)
Q Consensus 192 ~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~ 268 (492)
.+...........+..++ -++..+.+..++++=+|.+++... . .+=+.+++.|..+.+...+....+.-..+.+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~-~i~~~i~f~~L~~~Nkk~r~~~~~~~LS~RYQl~ENl~slr~L~p~~~~~~i~~~~~~~~~ 253 (324)
T PF10292_consen 175 SSSSPYRVNIPFIVILVL-QILALILFRYLLRKNKKLRKQQKHSTLSERYQLEENLRSLRLLKPFIILSSIFIFFYIFAS 253 (324)
T ss_pred cCCCchhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhccCCCcchHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544222222222222222 222222333333333332221111 1 111224456677776655555444444444333
Q ss_pred HHHh-ccCC-cchHHH-HHH--HHHhhcccccchhhhhcChHHHHHHHHHh
Q psy11022 269 SVAS-FRHQ-ITPSFY-YLA--WLALSKSCINSVLYCISNRHFRNAYINLF 314 (492)
Q Consensus 269 ~~~~-~~~~-~~~~~~-~~~--~l~~~~s~~nP~IY~~~~~~~R~~~~~~~ 314 (492)
.... +.+. +..... +.. ...-.++.+-|++.....++.|++.++-+
T Consensus 254 ~~~~~~~~~~~~~~y~al~e~~~~~P~Y~ii~~~~~~~~~k~~r~~~~~~l 304 (324)
T PF10292_consen 254 IFLRLFNPSMSKPNYFALAELNHIFPLYSIISPLILYRKIKKIRKKRKKRL 304 (324)
T ss_pred HHHHHhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322 2222 222222 112 23335778889988888888888876655
No 31
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=98.73 E-value=2.2e-09 Score=103.26 Aligned_cols=260 Identities=15% Similarity=0.126 Sum_probs=160.0
Q ss_pred HHHHHHHhhhcceeeeeeeeccccc-cchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCC-------Cccccccccchhh
Q psy11022 48 TGLSVLGSVGNGYMISSVMIEDHLR-RRGNTYIAVEALADLLVSGVVIPVSAVMILAGIK-------QAEPIKEIMCHVQ 119 (492)
Q Consensus 48 ~~~~i~gl~gN~~vi~~i~~~~~lr-~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~-------~~~~~~~~~C~~~ 119 (492)
-+.++++++.|.+.++.+.++.+.. -.--.++...|+.|++.+.+-....-..+..+.. ..+..+.......
T Consensus 6 ~~~~~~s~~~N~~Li~Li~~~s~k~~G~Yk~Lm~~fs~~~i~fs~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (307)
T PF10326_consen 6 YIGFVLSLFLNSLLIYLILTKSPKSLGSYKYLMIYFSIFEIIFSILDFLVQPIIHSYGSSFVVFSDSGPFFLSKSIGQIL 85 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEehhHHHHHHHHHHHHHHHhceeecCCeeEEEeecccccccchheeeh
Confidence 4567899999999998876532222 2334577778889988876443322222111111 1223344456666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhh-hcc---------------
Q psy11022 120 WFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFI-YKV--------------- 183 (492)
Q Consensus 120 ~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~-~~~--------------- 183 (492)
..+...+...+...++.--+.||.++++|- +-+..+.++.....+..-+.++.+...... ...
T Consensus 86 ~~~y~~~f~~~~~llaihFiYRY~av~~~~-~l~~f~~~~~~~w~~~~~~~~~~W~~~~~~~~~~~~~~~~~lr~~~~~~ 164 (307)
T PF10326_consen 86 LAIYCGCFGMSFSLLAIHFIYRYWAVCRPK-KLRYFSGWRFIIWFLIPIIFGIIWFLLVYFFFSPDEESDEYLREELLEN 164 (307)
T ss_pred hhhhhhhHHHHHHHHHhHhhhheeeeccch-hhccccccceeeeehhhhhhcccceEEEeehhccchhhhhhhccccccc
Confidence 777788888889999999999999999994 334445454443333333333333221111 000
Q ss_pred ---cccc-------ccc-cccc------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccchhhHH
Q psy11022 184 ---GPDY-------CSK-KVSY------MELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSL 246 (492)
Q Consensus 184 ---~~~~-------C~~-~~~~------~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 246 (492)
+.+. -.. +.+. ..............+.+.++++|-.++++++++..+.. .++.++-+++.
T Consensus 165 y~~~i~~~~y~~~~~y~~~~nG~~~~~~~~~~~~~~~~~im~~s~~iii~cg~~~~~~i~~~~~~~---S~~~~~lq~QL 241 (307)
T PF10326_consen 165 YGLDIDEIPYVGFVYYPKDENGSKELNWPSFIGMLIMCIIMSISFFIIIYCGIKIYKKIKKLSSIM---SSKTRKLQKQL 241 (307)
T ss_pred cCCCccceeEEEEEEeeeccCCceeechhhheeeeecchhHHhHHHHHHHHHhhhHHHHhcccccc---ChhhHHHHHHH
Confidence 0000 000 0000 01112222335567888899999999999985543332 44555667888
Q ss_pred HHHHHHHHHH-HHHHhHhHHHHHHHHhccCCcchHHHHHHHHHhhcccccchhhhhcChHHHHHHH
Q psy11022 247 MLTNMYSYIM-FIVLWIPFCIVMSVASFRHQITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYI 311 (492)
Q Consensus 247 ~~~~~~~~~~-f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~ 311 (492)
.+.+.+.+++ .++...|..+......++-..............+.|++||++-.+.-||+|++++
T Consensus 242 f~aLv~Qt~iP~i~~~~P~~~~~~~p~~~i~~~~~~~~~~~~~~~yP~iDpl~~i~~ik~yR~~i~ 307 (307)
T PF10326_consen 242 FKALVIQTIIPFIFMYIPVFIVFILPFFGIDLGFFSNIISILISLYPAIDPLPVIFIIKDYRKAIK 307 (307)
T ss_pred HHHHHHHhhhhheeeecchhheeeeeccCCCCCccccHhhhhEEEEeehhhheeeEeeHHHHHhhC
Confidence 8888877766 7778899887777666654444445556667778999999999999999999874
No 32
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=98.72 E-value=4.4e-06 Score=78.42 Aligned_cols=220 Identities=19% Similarity=0.181 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHhhhcceeeeeeeecc--c--cccc--hhhHHHHHHHHHHHhhhchhcHHHHHHHhcCC-Cc-------
Q psy11022 43 RLLITTGLSVLGSVGNGYMISSVMIED--H--LRRR--GNTYIAVEALADLLVSGVVIPVSAVMILAGIK-QA------- 108 (492)
Q Consensus 43 ~~~~~~~~~i~gl~gN~~vi~~i~~~~--~--lr~~--~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~-~~------- 108 (492)
.-.+....+.+|+.|-++-++=-.+.. + .++| ..-.+..||+||++.++-.+............ ++
T Consensus 29 f~avCLgSs~l~l~gallQLlp~rr~~~~~~~~~sp~~~~rIl~~la~aDlLaclGVivRS~vWl~~p~~~~s~s~~~~~ 108 (405)
T PF02101_consen 29 FNAVCLGSSVLSLLGALLQLLPRRRSAGPRAPARSPSSSRRILFWLAVADLLACLGVIVRSSVWLGFPNFIDSISDVNGT 108 (405)
T ss_pred hhhhHHHHHHHHHHHHHHhhccccccccccccccCCcCCchhHHHHHHHHHHhhhhHHHHhhhhhcCCcccccccCCCCC
Confidence 344555566777777776664221111 0 1112 24588899999999985544444332222110 00
Q ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhh--hhccccc
Q psy11022 109 EPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQF--IYKVGPD 186 (492)
Q Consensus 109 ~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~--~~~~~~~ 186 (492)
-......|........+++.++.+-+.+-|+|=|+.+.+-- .+.+.+..-..+|..+.++..-.. ++..+..
T Consensus 109 d~wp~afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~~~~a------g~~~~~lYH~~aWgl~~lL~~~Gl~~Ly~Ps~~ 182 (405)
T PF02101_consen 109 DIWPAAFCVGSSMWIQLFYSATFWWTFCYAVDVYLVIRRSA------GRSTIWLYHMMAWGLPALLCAEGLAMLYYPSIS 182 (405)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeeccC------CCcchhHHHHHHHHHHHHHHHhccceeecCCHH
Confidence 01123568888888888999999999999999999885431 122334556788999888876433 2334445
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhcCCCCCCCcc-cchhhHHHHHHHHHHHHHHHHh
Q psy11022 187 YCSKKVSYMELYQGIIGSLFFFIPIIITC----ILYMKITYKVRLARQNPSFKPPVI-FGWDYSLMLTNMYSYIMFIVLW 261 (492)
Q Consensus 187 ~C~~~~~~~~~~~~~~~~~~~~ip~~ii~----~~y~~i~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~f~i~~ 261 (492)
.|....++...++ +...+|+++.. +.|.+..+++-+.-+.+...-..+ ++......+-.+.+.++|.+||
T Consensus 183 ~Ce~~l~~alphY-----vttY~PlllVlvaNPiLy~~a~~~V~~~lk~r~g~yT~~ER~l~~~IK~kFf~I~lVF~iCW 257 (405)
T PF02101_consen 183 RCESGLEHALPHY-----VTTYIPLLLVLVANPILYIKAVRAVASLLKGRQGIYTENERRLGAQIKIKFFKIMLVFYICW 257 (405)
T ss_pred hhhhhhhhcchhH-----HHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5764433322221 22334444444 455555555544433322222221 2222334445677889999999
Q ss_pred HhHHHHHHHHhc
Q psy11022 262 IPFCIVMSVASF 273 (492)
Q Consensus 262 ~P~~i~~~~~~~ 273 (492)
+|..+-.++..+
T Consensus 258 lpNIINg~LL~~ 269 (405)
T PF02101_consen 258 LPNIINGSLLFY 269 (405)
T ss_pred hhhhHhHHHHHH
Confidence 999987775543
No 33
>KOG4193|consensus
Probab=98.65 E-value=1.1e-06 Score=90.07 Aligned_cols=240 Identities=13% Similarity=0.164 Sum_probs=147.7
Q ss_pred HHHhhhcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCccccccc-cchhhHHHHHHHHHHH
Q psy11022 52 VLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEI-MCHVQWFLTLLCSLVT 130 (492)
Q Consensus 52 i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~-~C~~~~~~~~~~~~~s 130 (492)
++++++=.+.+++.+.-|++++-.+....||+++=++.-++ .+.+... ...+. .|....++.+++..++
T Consensus 331 ~iSlvcL~lti~ty~~~~~l~~~~~~i~~~l~~~L~l~~l~--------fL~~~~~--~~~~~~~C~~~a~llhff~Laa 400 (610)
T KOG4193|consen 331 IISLVCLLLTIATYLLFRKLQNDRTKIHINLCLCLFLAELL--------FLLGIDR--TSTSVVLCIAAAILLHFFFLAA 400 (610)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH--------Hhccccc--ccCcccccHHHHHHHHHHHHHH
Confidence 33333333344444444666554477778888872222111 1111111 11222 6999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhcc-------cccccccccccchhHHHHHH
Q psy11022 131 VWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKV-------GPDYCSKKVSYMELYQGIIG 203 (492)
Q Consensus 131 ~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~-------~~~~C~~~~~~~~~~~~~~~ 203 (492)
..-+.++++.-|..++.= .+...+++.....+..|..++++.......+. ...+|+.+.+....+.
T Consensus 401 F~Wm~leg~hl~~~~v~v---f~~~~~~~~l~~~~~gwg~Pavvv~Isa~~~~~~~~~~~~~~~CWl~~~~~~~~~---- 473 (610)
T KOG4193|consen 401 FFWMLLEGFHLYLLLVEV---FRSRPRRRKLLYSLYGWGVPAVVVGVSALVDPDLEGQYGTPRVCWLDTQNGFIWS---- 473 (610)
T ss_pred HHHHHHHHHHHHHHHHHH---hccccchHHHHHHHHHhhhhHHHHhheeEEeccCccccccCCceEEecCCceEEE----
Confidence 999999999999965543 33345555566657999999988776554332 2346888865433322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhhcCCCC-CCCcccchhhHHHHHHHHHHHHHHHHhHhHHHHHHHHhccCCcchHH
Q psy11022 204 SLFFFIPIIITCILYMKITYKVR-LARQNPSF-KPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQITPSF 281 (492)
Q Consensus 204 ~~~~~ip~~ii~~~y~~i~~~l~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~~~~~~~~~~~~~~ 281 (492)
++.|+.+++.+++.++...- +.-++..+ +...++....+..+..+.++.+.-+.|.-.. ............
T Consensus 474 ---F~GPv~~ii~~Ni~~Fv~t~~~l~~~~~~~~~~~~~~~~~~~~~~~l~L~~lLGlTW~fgi----~s~~~~~~~v~~ 546 (610)
T KOG4193|consen 474 ---FLGPVTLIILVNIVMFVVTLKKLLRRLSKLQPIASKLENISLIRSALALLFLLGLTWIFGI----FSWLPGTSVVFA 546 (610)
T ss_pred ---EehHHHHHHHHHHHHHHHHHHHHhhcccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcccchHHH
Confidence 66777777777755443332 22111111 1112222222567777778778888885432 222222566677
Q ss_pred HHHHHHHhhcccccchhhhhcChHHHHHHHHHhc
Q psy11022 282 YYLAWLALSKSCINSVLYCISNRHFRNAYINLFH 315 (492)
Q Consensus 282 ~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~~ 315 (492)
|+..++-.++..+=.+.|++++++.|++.++.++
T Consensus 547 YlFti~NalQG~fIFi~~cll~~kvr~~~~k~~~ 580 (610)
T KOG4193|consen 547 YLFTIFNALQGVFIFIFHCLLRKKVRKEYRKWLC 580 (610)
T ss_pred HHHHHHHHhhhhHhhHhhhhhhHHHHHHHHHHhc
Confidence 7777777888888899999999999999999885
No 34
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=98.65 E-value=3e-06 Score=81.28 Aligned_cols=269 Identities=12% Similarity=0.128 Sum_probs=164.2
Q ss_pred HHHHHHHHHHHHhhhcceeeeeeeec-cccccchhhHHH----HHHHHHHHhhhchhcHHHHHHHhcCCCc-cccccccc
Q psy11022 43 RLLITTGLSVLGSVGNGYMISSVMIE-DHLRRRGNTYIA----VEALADLLVSGVVIPVSAVMILAGIKQA-EPIKEIMC 116 (492)
Q Consensus 43 ~~~~~~~~~i~gl~gN~~vi~~i~~~-~~lr~~~~~~l~----~Lai~Dll~~~~~~p~~~~~~~~~~~~~-~~~~~~~C 116 (492)
.....=++.++++.-|.+.++++.++ ++.-+..-..++ -..+.|+..+.+..|........+.... ...-+.-.
T Consensus 6 ~~~~~h~~~~i~~Pi~~~~~y~Il~ktp~~m~~~k~~ll~~~~~~~~~d~~~~~l~~P~~~~P~~~~~~~G~l~~~gv~~ 85 (302)
T PF10318_consen 6 YSIVLHIITIISIPIYIFGFYCILFKTPKSMKSVKWYLLNHHFWNFLLDLYLSFLIIPYFFFPSPAGYPLGILSYFGVPT 85 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeEeChhhhHHHHHHHHHHHHHHHHHHHHhhhEEeeeeccchHHhhCCcchhhcccCh
Confidence 44555667777888888888766554 332222222232 3457888888888887766666554331 11112346
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhccc----------cc
Q psy11022 117 HVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKVG----------PD 186 (492)
Q Consensus 117 ~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~----------~~ 186 (492)
.++.++..........+...+--+||.++..+-+ +...++.........++.+.....|......+ ..
T Consensus 86 ~~q~~i~~~~~~~~~~S~~~lFe~R~~~i~~~~~--~~~~~~~r~~~~~~~y~~~~~~~~~~~~~~pdQ~~~k~~~~~~~ 163 (302)
T PF10318_consen 86 PIQFYIGVTLLAFVGVSILSLFENRYQIIIRNRS--RSLWKKIRIIFIIFNYIIAFLFFIPIYLSIPDQEEAKQEVLKKY 163 (302)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccc--cccchhhHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHhhc
Confidence 7777888888888888999999999999997633 22223333444455555555555554432111 11
Q ss_pred ccccc--c--------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccchhhHHHHHHHHHHHH
Q psy11022 187 YCSKK--V--------SYMELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIM 256 (492)
Q Consensus 187 ~C~~~--~--------~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (492)
.|... . +.+..+.........++....+.+....+.+.++++.+ .+..++++|.++|..+.+.+.+++
T Consensus 164 pc~~~~~~~~~~~fv~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~--~~~S~~T~k~Qkkfl~~l~iQ~~i 241 (302)
T PF10318_consen 164 PCPPPEFFDNPPVFVLSTDSWYILIIIIIFLLIIFIQIIFFAFLIIYYLLKSQK--KTMSKKTRKMQKKFLIALIIQVLI 241 (302)
T ss_pred cCCchhhcCCCCeEEEcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch--hhhCHHHHHHHHHHHHHHHHHHHH
Confidence 23221 0 11122323333333344444444444455555555543 444556667788888888777766
Q ss_pred HH-HHhHhHHHHHHHHhccCCcchHHHHHHHHHhhcccccchhhhhcChHHHHHHHHHhc
Q psy11022 257 FI-VLWIPFCIVMSVASFRHQITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFH 315 (492)
Q Consensus 257 f~-i~~~P~~i~~~~~~~~~~~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~~ 315 (492)
.+ +.-.|..........+............+...+..+.-++..+.+|.+|+.++++++
T Consensus 242 p~~~l~~P~~~~~~~~~~~~~~q~~~n~~~~~~~~HG~~sti~mi~~~~pYR~~~~~~~~ 301 (302)
T PF10318_consen 242 PFIFLFIPLIYFIISIIFGYYNQALNNISFIIISLHGIASTIVMILVHKPYRKFLLSLFR 301 (302)
T ss_pred HHHHHhhhHHHHHHHHhccccccccchHHHHHHHhccHHHHHHHhhccHHHHHHHHHHhc
Confidence 44 445677766665555555566666777788899999999999999999999999985
No 35
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=98.62 E-value=1.3e-07 Score=88.17 Aligned_cols=107 Identities=18% Similarity=0.287 Sum_probs=86.5
Q ss_pred cccccccccchHhHHHHHhhHhhhccchhHHHHHHHhcCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeee
Q psy11022 370 YRSIIHITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLC 449 (492)
Q Consensus 370 ~~~~l~~~~~~~~~~la~~D~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~ 449 (492)
.++++|++.++++..+|++|++.++..+|.....+ ++ -......|-.+.+...++...+...+.+|++||++||+
T Consensus 17 ~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~~--~~---~~i~~~~Cf~~~~~~~f~~~~qs~~~l~i~iDr~iaV~ 91 (257)
T PF10320_consen 17 RNKSLRSPCYILICILCFADLICLLGTLPFMLFLF--RD---HQITRSECFWQIFFYIFFQCAQSVIMLAIAIDRLIAVC 91 (257)
T ss_pred hccccccchHHHHHHHHHHHHHHHhhHHHHHHHHH--hh---eeccHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEe
Confidence 45689999999999999999999888888776333 21 22677789999999999999999999999999999999
Q ss_pred ccCcccceeehhHHHHHHHHHHHHHHHHhhhc
Q psy11022 450 MPPECYTFFSKSHIILSVIMIWLVSILLTTLQ 481 (492)
Q Consensus 450 ~p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~ 481 (492)
.|++|++..+.+-...+.....+.+......-
T Consensus 92 ~P~~Y~~~~~~~y~~~~~~~~~~~s~~~~~~~ 123 (257)
T PF10320_consen 92 FPLRYRTISTRKYLIILLIFPVIYSIFFTVIG 123 (257)
T ss_pred ehhhhhhcccccchhhHhHHHHHHHHHHHhhe
Confidence 99999998888766666566666666554433
No 36
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=98.59 E-value=4.9e-07 Score=85.56 Aligned_cols=252 Identities=13% Similarity=0.120 Sum_probs=138.0
Q ss_pred HHHHHhhhcceeeeeeeeccc--c-ccchhhHHHHHHHHHHHhhhchhcH-HHHHHHhcCCC----ccccccccchhhHH
Q psy11022 50 LSVLGSVGNGYMISSVMIEDH--L-RRRGNTYIAVEALADLLVSGVVIPV-SAVMILAGIKQ----AEPIKEIMCHVQWF 121 (492)
Q Consensus 50 ~~i~gl~gN~~vi~~i~~~~~--l-r~~~~~~l~~Lai~Dll~~~~~~p~-~~~~~~~~~~~----~~~~~~~~C~~~~~ 121 (492)
-++.+++.+..+++++.++|+ . +++.+.+...-++.|+++-+...+. -+......... .....+.......+
T Consensus 7 Ygi~s~~l~~~~~~~i~~~~~~~~~~~sFy~l~~~d~~~ni~~~ln~~~~~Rl~~~~~~~~~~~~~~~~~~~~~l~~~~~ 86 (275)
T PF02118_consen 7 YGIPSLILYIFILYVIWKSKKKSYFKSSFYRLYIMDLIMNILTYLNTWITLRLPSYTPPFCPFFLPFFENPPFFLNIFYF 86 (275)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCCccHHHHHHHhHHHHHHHHHHHHHHHhccccCccchhHHHHHcCCcHHHHHHHH
Confidence 345666777777777777766 4 5666666666667777664332221 11111000000 00223344667778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhc------ccccccccccccc
Q psy11022 122 LTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYK------VGPDYCSKKVSYM 195 (492)
Q Consensus 122 ~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~------~~~~~C~~~~~~~ 195 (492)
+......+...+...+++||+-++..|.++.+..++.. ...++++.++++....+.+... .+...-.......
T Consensus 87 l~~~~~~~Q~~~~~~is~nR~t~v~~p~~~~~~W~~~~-~~~i~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (275)
T PF02118_consen 87 LQYYFAYVQYLSTILISLNRFTSVLFPIRYEKFWKRYY-WIIIIIIFLLPFSFTWNIFISPTYVVYDNGGFSYSYNDTVS 165 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHhhh-hhheeeeeehhHHHHHHHHccccEEEEECCceEEEEEeccc
Confidence 88889999999999999999999999988877666544 3445555555554433333211 1111111111111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHhHhHHHHHHHHhccC
Q psy11022 196 ELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRH 275 (492)
Q Consensus 196 ~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~~~~~~~~ 275 (492)
............++..++.++++....+++++.++ +.++.|++..+..+...+.+.+.-....+.........
T Consensus 166 ~~~~~~~~~~~~i~~~ii~i~~~~~~~~~l~~~~~-------~~~~~er~L~~is~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (275)
T PF02118_consen 166 WASLSIFSLIYFIIIIIITIITNIITYRRLRKLSK-------RIKSVERNLTIISFIISFVQLLIAIWQIINSFAFFFDF 238 (275)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 12222333344555556666777777777776531 12244666666666666666655444443211111112
Q ss_pred Cc--chHHHHHHHHHhhcccccchhhhhcChHHHHH
Q psy11022 276 QI--TPSFYYLAWLALSKSCINSVLYCISNRHFRNA 309 (492)
Q Consensus 276 ~~--~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~ 309 (492)
.+ ...........-.-+...|++-...++++|++
T Consensus 239 ~~~~~~~~~~~~f~sD~ltl~~P~iLl~fs~~vR~~ 274 (275)
T PF02118_consen 239 LPISSFLYYLLPFASDLLTLSQPYILLIFSKNVRRQ 274 (275)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHheECHhhhcc
Confidence 11 22222222333355777899999999999986
No 37
>KOG4564|consensus
Probab=98.42 E-value=1.4e-05 Score=78.52 Aligned_cols=259 Identities=13% Similarity=0.121 Sum_probs=159.2
Q ss_pred HHHHHHHHHHhhhcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCC-----cc----cccccc
Q psy11022 45 LITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQ-----AE----PIKEIM 115 (492)
Q Consensus 45 ~~~~~~~i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~-----~~----~~~~~~ 115 (492)
+++.+-..++++.=++.+.++..-|++|-..|++=.||.++=++-+...+............. .. ..+...
T Consensus 149 ~lytvGyslSl~sL~vAl~If~~FR~L~CtRn~IH~nLF~SfiLra~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 228 (473)
T KOG4564|consen 149 ILYTVGYSLSLVSLLVALIIFLYFRSLHCTRNYIHMNLFASFILRAASVLIKDLVLVVNGEQDASSDTSLHCLISSNPVG 228 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccchh
Confidence 344443333333333334444556899999999999999999988865555544333222210 11 245677
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhc--ccccccccccc
Q psy11022 116 CHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYK--VGPDYCSKKVS 193 (492)
Q Consensus 116 C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~--~~~~~C~~~~~ 193 (492)
|+....+...+..+..+-+.+=++.-|-.++--.. -.+++-....++.|.+++++..+..+-. .+...|+...+
T Consensus 229 Ck~~~~~~~Yf~~aNf~WmlvEGlYLhtLlv~~~~----ser~~~~~y~~iGWG~P~v~v~~Wai~r~~~~d~~CW~~~~ 304 (473)
T KOG4564|consen 229 CKLLFVFFQYFVLANFFWMLVEGLYLHTLLVVAFF----SERRYFWLYLLIGWGVPAVFVVVWAIVRLYLEDTGCWDSND 304 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeec----cCccHHHHHHHHhhCCcHHHhhhHHhHheeeccccccccCC
Confidence 99999888888888888887777766655543321 1255667778999999999988766532 22235876654
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHhHhHHHHHHHHhc
Q psy11022 194 YMELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASF 273 (492)
Q Consensus 194 ~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~~~~~~ 273 (492)
....+.++. .-.++++++-.+..+.|.+.+-++-+..+.. .....+|++|..++++=+|-+-.+.+ .+
T Consensus 305 ~~~~~WIi~--gPi~~ai~vNf~flinIvrILv~KLr~~~~~---~~~~y~K~vKaTLvLIPLfGI~~ilf-------~~ 372 (473)
T KOG4564|consen 305 TGHIWWIIR--GPILLAILVNFIFLINIVRILVTKLRASNAS---ETDQYRKLVKATLVLIPLFGIHYILF-------AF 372 (473)
T ss_pred CcceEEEEe--ccHHHHHHHHHHHHHHHHHHHHHHhcCcccc---chHHHHHHHHHHHHHHHHcCCeeEEE-------Ee
Confidence 322222221 2234455556666666777665543332222 22336778887777765555543221 12
Q ss_pred cCCc----chHHHHHHHHHhhcccccchhhhhcChHHHHHHHHHhccccc
Q psy11022 274 RHQI----TPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFHYCCC 319 (492)
Q Consensus 274 ~~~~----~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~~~~~~ 319 (492)
.+.. ....++...+..++..+=.++|++.|+|.|.++||.+.+.+-
T Consensus 373 ~P~~~~~~~v~~~~~~~L~SfQGf~VAvlYCFlN~EVq~elrr~W~r~~~ 422 (473)
T KOG4564|consen 373 RPDEDTLREVYLYFELFLGSFQGFFVAVLYCFLNGEVQAELRRKWSRWRL 422 (473)
T ss_pred cCchHHHHHHHHHHHHHHHhccchheehheeecCHHHHHHHHHHHHhcCh
Confidence 2222 222334456777888999999999999999999999865443
No 38
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=98.37 E-value=7.4e-05 Score=69.49 Aligned_cols=263 Identities=13% Similarity=0.099 Sum_probs=141.0
Q ss_pred HHHHHHHHHhhhcceeeeeeeecccccc-chhhHHHHHHHHHHHhhhc--hhcHHHHHHHhcC----CCccccc-cccch
Q psy11022 46 ITTGLSVLGSVGNGYMISSVMIEDHLRR-RGNTYIAVEALADLLVSGV--VIPVSAVMILAGI----KQAEPIK-EIMCH 117 (492)
Q Consensus 46 ~~~~~~i~gl~gN~~vi~~i~~~~~lr~-~~~~~l~~Lai~Dll~~~~--~~p~~~~~~~~~~----~~~~~~~-~~~C~ 117 (492)
+=-+.++++.+.|-+.++.+..+|+.+- .-.++++--|+-|++.++. .+|..+...-... .+.|-.+ +..-.
T Consensus 10 ~Pk~~~~lsf~~Np~fiyli~~~~~~~~G~Yr~LL~~Fa~fn~~~S~~~~~vp~~vh~yry~F~~fi~dG~F~~~s~l~~ 89 (310)
T PF10319_consen 10 IPKIFGILSFIVNPIFIYLIFTEKKSQFGNYRYLLLFFAIFNLIYSVVDLLVPICVHGYRYAFVVFISDGPFFEKSELGQ 89 (310)
T ss_pred HHHHHHHHHHHHhhhhheeEEcccccccccHHHHHHHHHHHHHHHHHHHHHhhheeeccceEEEEEEcCCcCcCcchHHH
Confidence 3345678899999999999988887653 4457889999999999864 3443322211100 0011110 11111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhh-----------------
Q psy11022 118 VQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFI----------------- 180 (492)
Q Consensus 118 ~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~----------------- 180 (492)
.....-......|-..+..--+.||+++++|..-++.+.+......+...-.....+...-..
T Consensus 90 ~~ls~RCsfIs~sYaIL~~HFvYRYl~l~~~~~~~~~F~p~gl~~s~~~~~~h~~~W~~ic~~~~~ad~EiR~YIre~F~ 169 (310)
T PF10319_consen 90 HLLSIRCSFISGSYAILHIHFVYRYLVLFNSKFINKYFMPYGLIGSILYCLFHFASWHVICYFCMYADDEIRDYIRESFR 169 (310)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhCcHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Confidence 122223344455555666777899999999954444444444333333322222222221111
Q ss_pred --hcccccc-----ccccc-ccchhHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHhhcCCCCCCCcccchhhHHHHHH
Q psy11022 181 --YKVGPDY-----CSKKV-SYMELYQGIIGS-LFFFIPIIITCILYMKITY-KVRLARQNPSFKPPVIFGWDYSLMLTN 250 (492)
Q Consensus 181 --~~~~~~~-----C~~~~-~~~~~~~~~~~~-~~~~ip~~ii~~~y~~i~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (492)
++.+... +.... ++........++ ....+.... +..|...-. ..+|-+++.....+++.+-+++..|.+
T Consensus 170 e~YG~Ds~diNml~alY~eaS~~~v~rSW~gi~~~T~iS~~S-i~~y~vlg~~I~~kL~~~~~~mS~~T~~lq~qL~~AL 248 (310)
T PF10319_consen 170 EVYGVDSMDINMLIALYNEASDETVFRSWIGIIILTIISSYS-IILYFVLGYKIMKKLNKMSSTMSKKTKRLQRQLFKAL 248 (310)
T ss_pred HHhCCCCCcCceEeeeeccCchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhchhhhCHhHHHHHHHHHHHH
Confidence 0111110 11111 111222222222 222222222 222333322 223333344445555666778888888
Q ss_pred HHHHHH-HHHHhHhHHHHHHHHhcc-CCcchHHHHHHHHHhhcccccchhhhhcChHHHHH
Q psy11022 251 MYSYIM-FIVLWIPFCIVMSVASFR-HQITPSFYYLAWLALSKSCINSVLYCISNRHFRNA 309 (492)
Q Consensus 251 ~~~~~~-f~i~~~P~~i~~~~~~~~-~~~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~ 309 (492)
.+.+++ .+++..|..+......+. +...+..+........=+.+||+.-.+.-+.+|++
T Consensus 249 ~vQT~IPi~vsf~Pc~~~wy~pif~i~~~~~~n~~~~iAls~FPf~DPlAii~~lP~~R~r 309 (310)
T PF10319_consen 249 IVQTVIPICVSFSPCVLSWYGPIFGIDLGRWNNYFSVIALSAFPFLDPLAIILCLPAFRNR 309 (310)
T ss_pred HHHHHhHHHHhhccHHHHHhHHHHcCChhHHHHHHHHHHHHHccccCchHhheecHHhhcc
Confidence 887766 678888988877666664 33445555555555567999999999999999986
No 39
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=98.36 E-value=6.5e-07 Score=84.56 Aligned_cols=109 Identities=18% Similarity=0.356 Sum_probs=88.4
Q ss_pred cccccccchHhHHHHHhhHhhhccchhHHHHHHHhcCcCcccccccch-hHHHHHHHHHHHHHHHHHHHHhhhceeeeec
Q psy11022 372 SIIHITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMC-HVQWFLTLLCSLVTVWTLAMIAMENYVRLCM 450 (492)
Q Consensus 372 ~~l~~~~~~~~~~la~~D~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C-~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~ 450 (492)
..+|++.+.+..+.|++|++.++..+-+..+....+. -...+... .+.+.........+.++..+||++|+.||+.
T Consensus 22 ~~~~~sF~~l~~~~a~~n~i~~~~~l~~~~P~~~~~~---~~~~~~~~s~~~g~~~~~~y~~~~~~~~liaiNRf~ai~f 98 (274)
T PF10328_consen 22 KSLRNSFGILCASQAIANIIICLIFLFWVVPMTLLDI---SFLPSSLNSIIFGFIGMFCYFIGPLSHLLIAINRFCAIFF 98 (274)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc---ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeee
Confidence 3677888999999999999998866655666666553 22333333 4448888888889999999999999999999
Q ss_pred cCcccceeehhHHHHHHHHHHHHHHHHhhhccc
Q psy11022 451 PPECYTFFSKSHIILSVIMIWLVSILLTTLQFE 483 (492)
Q Consensus 451 p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~ 483 (492)
|.+|++..+.+.+..+++.+|++++....+++.
T Consensus 99 P~~y~~~fs~~~T~~~i~~~~~~~~~~~~~~~~ 131 (274)
T PF10328_consen 99 PFKYKKIFSFKNTIILIAFIWLLSIIISTILYF 131 (274)
T ss_pred HHHHHhHcCccceehhhhHHHHHHHHHHHHhhh
Confidence 999999999999999999999999977666554
No 40
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=98.35 E-value=4.6e-05 Score=70.78 Aligned_cols=128 Identities=11% Similarity=0.051 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHhhhcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCccccccccchhh
Q psy11022 40 RVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQ 119 (492)
Q Consensus 40 ~~~~~~~~~~~~i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~ 119 (492)
..+...+-++.+.+....|..++..+..+|+.+++.-.++---.+.|.+.+....+............+....+..-...
T Consensus 5 ~~iv~~i~i~~s~~~~~iN~~lL~~if~~Kk~kk~~l~LfY~Rf~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~ 84 (273)
T PF10316_consen 5 AIIVSIIGIIFSIITCLINFYLLYSIFYSKKKKKPDLSLFYFRFAIDVFYGFSVFIYLIYYILFSLFPEFLDYKNLIFYI 84 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCEEeeHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhccccEEeeh
Confidence 34556677778899999999999988877774455556777789999999977666655555433221111122233344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHH
Q psy11022 120 WFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMI 167 (492)
Q Consensus 120 ~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~ 167 (492)
++...............||+||.+|+..|..|++.+.+-......+.+
T Consensus 85 ~~p~~~~~~iR~~l~~~Ia~dR~~A~~fPI~y~~~r~k~~~~~I~~~~ 132 (273)
T PF10316_consen 85 GWPSSNLGSIRSILALIIALDRVFAVYFPIFYHNYRKKIPNFIIIIIA 132 (273)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCccccHHHHHHHH
Confidence 455556667888899999999999999999888866655444433333
No 41
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=98.24 E-value=6.1e-05 Score=67.61 Aligned_cols=231 Identities=13% Similarity=0.269 Sum_probs=142.5
Q ss_pred cccccc-chhhHHHHHHHHHHHhhhc----hhcHHHHHHHhcCCCccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy11022 68 EDHLRR-RGNTYIAVEALADLLVSGV----VIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENY 142 (492)
Q Consensus 68 ~~~lr~-~~~~~l~~Lai~Dll~~~~----~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy 142 (492)
.++.|+ +...|+..|.++-++.+.+ .+|..+....... -..+..-.+..+...++.++-.+.-..||+.|.
T Consensus 41 W~~Fk~m~ffwFl~qlt~s~fi~S~lNl~inVPatlfsl~t~~----~~~s~~f~~~Sy~idf~h~siLfsNlviaIqR~ 116 (305)
T PF04789_consen 41 WSHFKPMKFFWFLTQLTISVFIISSLNLLINVPATLFSLITKE----FVQSELFIFMSYLIDFCHYSILFSNLVIAIQRF 116 (305)
T ss_pred HHhcccchHHHHHHHHHHHHHHHHhhhheEeCcHHHHHhhhHH----HhccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344444 6788999999998887754 4454443333221 222333556678888999999999999999998
Q ss_pred HHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhcccc----------cccccc-----cccchhHHHHHHHHHH
Q psy11022 143 VRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKVGP----------DYCSKK-----VSYMELYQGIIGSLFF 207 (492)
Q Consensus 143 ~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~----------~~C~~~-----~~~~~~~~~~~~~~~~ 207 (492)
...-.--.-.+.+.+....+....+|+.+..........++.. -.|... .+..+.....-..+.+
T Consensus 117 fVFFfr~~t~~~F~s~~iyiWL~~vWils~~v~~~l~~~nC~Y~y~~~~~~y~L~C~~~~~~v~~~~P~~IqiiE~ilQ~ 196 (305)
T PF04789_consen 117 FVFFFRNLTDKVFESPVIYIWLLLVWILSIGVVYSLMSNNCRYRYNKWSKHYQLNCETCNSVVDISPPRGIQIIEIILQF 196 (305)
T ss_pred eeeeehhhhhhhccchHHHHHHHHHHHHHHHHHHHHHhCCCeeecccccccEEEEcCCCCeeEeeCCCCchhHHHHHHHH
Confidence 7765321222345566777888899999988765444322211 135544 2333556667777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHhHhHHHHHHHHhccCCcchHH---HHH
Q psy11022 208 FIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQITPSF---YYL 284 (492)
Q Consensus 208 ~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~~~~~~~~~~~~~~---~~~ 284 (492)
.+|+++... |+.+..++..+++.. ..+.|.+..|..+.+. ++...+..+...-....-.....+ ++.
T Consensus 197 ~IPi~Il~i-YiAIIiKI~~MKkss------LnK~Ei~ILKQAifIF---vlFQ~ss~VFl~~qt~~~~~~tAFlIKR~i 266 (305)
T PF04789_consen 197 GIPIFILVI-YIAIIIKIIKMKKSS------LNKNEITILKQAIFIF---VLFQASSCVFLLCQTFKFNVATAFLIKRII 266 (305)
T ss_pred hHHHHHHHH-HHHHHHHHHHHhhcc------CCchhHHHHHHHHHHH---HHHHHHHHHHHhheeeeecchHHHHHHHHH
Confidence 998876655 544444444443222 2244777777776654 444555544444444332333332 333
Q ss_pred HHHHhhcccccchhhhhcChHHHHHHHH
Q psy11022 285 AWLALSKSCINSVLYCISNRHFRNAYIN 312 (492)
Q Consensus 285 ~~l~~~~s~~nP~IY~~~~~~~R~~~~~ 312 (492)
..+-....+.-|..+.+.+||.|+-+-.
T Consensus 267 NT~ei~agaatP~ffffTs~eirk~~s~ 294 (305)
T PF04789_consen 267 NTMEIFAGAATPCFFFFTSKEIRKLVSS 294 (305)
T ss_pred HHHHHHhhccCCeEEEEehHHHHHHHHh
Confidence 4455567889999999999999998743
No 42
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=98.07 E-value=1.5e-06 Score=80.52 Aligned_cols=203 Identities=13% Similarity=0.100 Sum_probs=3.9
Q ss_pred HHHHHHHHHHhhhcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCccccccccchhhHHHHH
Q psy11022 45 LITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTL 124 (492)
Q Consensus 45 ~~~~~~~i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~ 124 (492)
++..+-+.+++++-.+.+......|++|+..+....||++++++..+..+... ....... ....+..|...+.+.+
T Consensus 5 ~i~~vg~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~~~-~~~~~~~---~~~~~~~C~~~a~~~h 80 (242)
T PF00002_consen 5 IISYVGCSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLIGI-SQTFSPI---STTNHCLCRAIAILLH 80 (242)
T ss_dssp HHHHHHHH------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHheeh-hhccccc---cccccccchhhhhHhH
Confidence 34445555666666666666666688888778899999999998875443321 1111110 0111224999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhc---ccccccccccccchhHHHH
Q psy11022 125 LCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYK---VGPDYCSKKVSYMELYQGI 201 (492)
Q Consensus 125 ~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~---~~~~~C~~~~~~~~~~~~~ 201 (492)
.+..++..-+.+.++|-|..+..+.. ..+++.+...+..|.+++++.......+ .+.+.|+...+....
T Consensus 81 y~~la~f~Wm~~~~~~l~~~~~~~~~----~~~~~~~~~~~~gwg~P~~iv~i~~~~~~~~y~~~~CWl~~~~~~~---- 152 (242)
T PF00002_consen 81 YFFLASFFWMLVEAFYLYRLLVKVFN----SSRRRFWWYYLIGWGIPALIVVISVAVNSDGYGNDNCWLSNDWGFI---- 152 (242)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhheeEEEeec----ccchhhheeeeeeecCcceeeeeeeeecccccccccccccCCCceE----
Confidence 99999999999999999999988722 1245556677889999998877665544 234568555422111
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHhhcCCCCCCCcccchhh-HHHHHHHHHHHHHHHHhHhHH
Q psy11022 202 IGSLFFFIPIIITCILY----MKITYKVRLARQNPSFKPPVIFGWDY-SLMLTNMYSYIMFIVLWIPFC 265 (492)
Q Consensus 202 ~~~~~~~ip~~ii~~~y----~~i~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~f~i~~~P~~ 265 (492)
..+..|..++...+ ..+.++++++.++ ++.++.++++ +..+....+..++.+.|....
T Consensus 153 ---~~f~~P~~~~l~in~vi~~~v~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~L~~llg~~w~~~~ 215 (242)
T PF00002_consen 153 ---WAFVGPVLIILLINIVIFILVLRVLVRKSRS---SDKSEKKKRRKKILRASLILLPLLGITWLFGI 215 (242)
T ss_dssp ---------------------------------------------------------------------
T ss_pred ---EEEEecccceecccchhheeeEEeehhhhhh---hhhhhccchhhhHHHHHHHHHHHHHHHheeee
Confidence 22344554444433 3444444443331 1111122222 366666777777788887643
No 43
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=97.95 E-value=0.0014 Score=64.41 Aligned_cols=265 Identities=14% Similarity=0.107 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcceeeeeeeeccccccchhhHHHHHHHHHH---HhhhchhcHHHHHHHh-cCC-----Ccc
Q psy11022 39 NRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADL---LVSGVVIPVSAVMILA-GIK-----QAE 109 (492)
Q Consensus 39 ~~~~~~~~~~~~~i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dl---l~~~~~~p~~~~~~~~-~~~-----~~~ 109 (492)
......++-.++.+++..-......++.+.|..|.-.+.+.......-+ +.=+...|........ +.. .-|
T Consensus 25 ~~~~~~i~e~~l~~~~~~~~~~~~~i~~~~r~FH~N~~~l~~~~~~~w~e~~i~k~~i~~y~~~~~~~~~~~~~~~~~~~ 104 (365)
T PF03125_consen 25 FYIILLIFELILYIICFYFTFKSCYIILKIRQFHRNLNILFIFILLQWFELIIGKILIIPYQIGIITLGDISIGTYIQWW 104 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeeecCccchhhhhhh
Confidence 4555555555666666655555556677778888765555444433332 2222333333222110 000 001
Q ss_pred cc-----------cccc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhH-HhHhhHHHHHHHHHhh
Q psy11022 110 PI-----------KEIM-CHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHI-ILSVIMIWLVSILLTT 176 (492)
Q Consensus 110 ~~-----------~~~~-C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~-~~~i~~~w~~s~~~~~ 176 (492)
.. .+.. -.+.+++...........+.++++||.+|-..--.|.++ +++.. ..+++..-++++..+.
T Consensus 105 t~~~~~m~~v~~~~~~~~l~~~~~l~~~y~~~~~~~~~~~~iER~~AT~~i~dYEk~-~R~~I~~~l~~~~~~~~~~~s~ 183 (365)
T PF03125_consen 105 TDDPSEMIPVNSFNDSWPLFIGGFLRWHYMFSAIFCLLAIVIERCFATYFIKDYEKK-SRRWISILLIIFSQIFSIIFSY 183 (365)
T ss_pred ccCcccceeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCchHHHHHHHHHHHHHHHHHH
Confidence 11 1111 223345555555666899999999999999888666554 33322 2223333333333332
Q ss_pred hhhhhcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhcCCCC-C-----CCcccchhhHH
Q psy11022 177 LQFIYKVGPDYCSKKVSYMELYQGIIGSLFFFIPIIITCILYMKITY----KVRLARQNPSF-K-----PPVIFGWDYSL 246 (492)
Q Consensus 177 ~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~----~l~~~~~~~~~-~-----~~~~~~~~~~~ 246 (492)
.... . ...........+++.++-...+..+.+ ..++.++..++ + ++=+-+++.|.
T Consensus 184 ~~~~-~--------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~N~~~~~~l~~~~~~~~~YSLs~RFQi~ENir~ 248 (365)
T PF03125_consen 184 FVIF-N--------------IIPFIFHVIIFIVSNIISFVLFFILYRYNRKRLKKLENPRRKISKYSLSQRFQIKENIRS 248 (365)
T ss_pred HHHH-H--------------hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCceechhhHhhHHHHHHH
Confidence 1111 0 000111112222222222222222222 11222211111 1 01112334455
Q ss_pred HHHHH---HHHHHHHHHhHhHHHHHHHHhccCCcchHHHHHHHHHhhcccccchhhhhcChHHHHHHHHHhccccc
Q psy11022 247 MLTNM---YSYIMFIVLWIPFCIVMSVASFRHQITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFHYCCC 319 (492)
Q Consensus 247 ~~~~~---~~~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~~~~~~~~~ 319 (492)
.+.+. ...+.+.+.-....+....+...+..............+++.+=|.+-....++.|+++++.+....|
T Consensus 249 l~l~~~~vi~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~e~~i~l~~~~i~~~~i~s~~~wrk~f~~~~~~~~~ 324 (365)
T PF03125_consen 249 LKLLKRVVIVIAFFIILCLIILILLSFDLSPSYRTILNHIFENCIFLNPIFICPVIIFSVPSWRKEFKRSFPKIRC 324 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHHHHhhHHHHHHHHHcCHHHHHHHHHhhhhhhc
Confidence 55443 33333333222222222222222222333445556777888888888889999999999998865444
No 44
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=97.93 E-value=0.00093 Score=64.43 Aligned_cols=268 Identities=10% Similarity=0.067 Sum_probs=140.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhcceeeeeeeeccccccc-hhhHHHHHHHHHHHhhhchhcH---HHHHHHhcCCC--cccc
Q psy11022 38 WNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRR-GNTYIAVEALADLLVSGVVIPV---SAVMILAGIKQ--AEPI 111 (492)
Q Consensus 38 ~~~~~~~~~~~~~~i~gl~gN~~vi~~i~~~~~lr~~-~~~~l~~Lai~Dll~~~~~~p~---~~~~~~~~~~~--~~~~ 111 (492)
+.-....++..++.++++++....+-.++++.-..+. ...++.+|..+++=.. ...-. .+...+...++ +..+
T Consensus 18 ~~~~~~~~~~~~~~~~t~~~s~~Ai~~l~~ksif~~sTr~LL~~~l~~a~~Hq~-~y~~~~~~~lyrsf~~~~dpC~i~f 96 (328)
T PF02117_consen 18 WNFRINQIFILIIIIITFIFSVFAIKKLWKKSIFSNSTRILLISNLLFANIHQI-SYAIIQIWSLYRSFFYSDDPCSILF 96 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCCeeeEe
Confidence 3445566677777788888877777666555445553 4556777776666433 21111 12222222222 5677
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhcc---ccccc
Q psy11022 112 KEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKV---GPDYC 188 (492)
Q Consensus 112 ~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~---~~~~C 188 (492)
.+..|........++.....+.-.++.+||.+|-..| ++..+.+......+.+.+-+.++.........++ ....|
T Consensus 97 ~~~eC~~~~~~~~~~~~~~~~~q~aL~idRl~at~~~-~~~~~~~~~~g~~l~i~~li~s~~~~~~i~~~~p~~gyv~~C 175 (328)
T PF02117_consen 97 TSSECFPYYYFYYFTNSGMIFIQFALTIDRLLATFFP-KYYSKKSYIIGIILSILVLILSFITGFIIYWDDPLDGYVPSC 175 (328)
T ss_pred ecCceeeeehHHHHHHHHHHHHHHHHHHHHHHHHhch-hhhhhhhHHHHHHHHHHHHHHHHHHeeEEEeCCCCccccccc
Confidence 7788999999999999999999999999999999988 4444333333333333333334433322221111 22457
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcc--cchhhHHHHHHHHHHHHHHHHhHhHHH
Q psy11022 189 SKKVSYMELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVI--FGWDYSLMLTNMYSYIMFIVLWIPFCI 266 (492)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~f~i~~~P~~i 266 (492)
................+.+.+.++ .++....+.+.-+|..++.+-+-.++ .++....++.+..+.+.-+++..-+.+
T Consensus 176 ~~~p~~s~~~~~~~~~~~~~l~i~-~~i~s~~l~~~nkk~e~~~~f~v~~Ry~~~Eni~ST~aI~~i~~~Q~i~~~iys~ 254 (328)
T PF02117_consen 176 FYPPKNSVNRFNIFLIVCFVLTIF-NLIVSIFLMYYNKKKEKKTRFDVNSRYQKRENINSTKAICIISISQFICMFIYSF 254 (328)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766443222222222222222222 22334444444444433322222121 234456677777777776666665554
Q ss_pred HHHH-Hhc-cCCcchHHHHHHHHHhhc---ccccchhhhhcChHHHH
Q psy11022 267 VMSV-ASF-RHQITPSFYYLAWLALSK---SCINSVLYCISNRHFRN 308 (492)
Q Consensus 267 ~~~~-~~~-~~~~~~~~~~~~~l~~~~---s~~nP~IY~~~~~~~R~ 308 (492)
.... ... ...++..+.......+.- ...=|++-.+.-+..|+
T Consensus 255 ~v~~l~~~~~~i~~~~~~~~~~~~Yt~py~~l~lP~li~~~~~~~~~ 301 (328)
T PF02117_consen 255 GVFILRNFRSSISPETFHNIVLWFYTFPYAALSLPLLIIYRIRRIRR 301 (328)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 3333 333 344444444444333333 33446655554444433
No 45
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=97.40 E-value=0.0004 Score=61.72 Aligned_cols=109 Identities=14% Similarity=0.139 Sum_probs=75.6
Q ss_pred cchHhHHHHHhhHhhhccchhHHHHHHHhcCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeeccC-----
Q psy11022 378 GNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPP----- 452 (492)
Q Consensus 378 ~~~~~~~la~~D~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~p~----- 452 (492)
.+.++.||.++|++.++..+.........+ .-..+...|..+|++....-.++-+...+||+.=|+.|.+|-
T Consensus 36 R~~LIl~L~~aD~~qal~~~i~~~~~l~~~---~i~~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~v~~~~~~~~~ 112 (201)
T PF11710_consen 36 RHQLILNLLLADFIQALAFLISPIRWLARG---GIIAPSPFCQAQGFFLQVGDEASDLWILAIAIHTFLIVFRPNWKRKR 112 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CeeCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc
Confidence 344999999999999876555445555444 334577899999999999999999999999999999999991
Q ss_pred -cccc---eeehhHHHHHHHHHHHHHHHHhhhccccceeee
Q psy11022 453 -ECYT---FFSKSHIILSVIMIWLVSILLTTLQFEKSIYSR 489 (492)
Q Consensus 453 -~~~~---~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 489 (492)
+..+ ...+........++|++...++......+.|-+
T Consensus 113 ~~~~~~gl~~~~~~v~~~~~~~~~~~~~la~i~~~~~~Y~~ 153 (201)
T PF11710_consen 113 SKNVEGGLYPYRYWVWVIWILVPLLLASLAFIGLGGPGYGP 153 (201)
T ss_pred ccccccceEEeeeeeehHHHHHHHHHHHHHHhccccCcccc
Confidence 1110 112233344445777777666655534444544
No 46
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=97.39 E-value=0.00021 Score=69.09 Aligned_cols=117 Identities=13% Similarity=0.193 Sum_probs=88.1
Q ss_pred ccccc-ccchHhHHHHHhhHhhhccchhHHHHHHHhc--CcCccccc----ccchhHHHHHHHHHHHHHHHHHHHHhhhc
Q psy11022 372 SIIHI-TGNTYIAVEALADLLVSGVVIPVSAVMILAG--IKQAEPIK----EIMCHVQWFLTLLCSLVTVWTLAMIAMEN 444 (492)
Q Consensus 372 ~~l~~-~~~~~~~~la~~D~~~~~~~~p~~~~~~~~~--~~~~~~~~----~~~C~~~~~~~~~~~~~s~~~l~~is~dR 444 (492)
..+|+ +.|.++..+|++|++..+..++......... .+.++... .....+...+...+--.|.|.-++||+.|
T Consensus 24 k~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~~~~~~l~~~~~~~S~WL~V~mA~iR 103 (318)
T PF10324_consen 24 KSMRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFKLIMESLSDIFRRISIWLGVLMALIR 103 (318)
T ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34565 7899999999999999988888887666544 12222211 11234445666778889999999999999
Q ss_pred eeeeeccCccc--ceeehhHHHHHHHHHHHHHHHHhhhccccceee
Q psy11022 445 YVRLCMPPECY--TFFSKSHIILSVIMIWLVSILLTTLQFEKSIYS 488 (492)
Q Consensus 445 y~ai~~p~~~~--~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 488 (492)
+.+|.+|++.+ +.-+++.+...+.++++.+.++..+.+.+.++.
T Consensus 104 ~l~i~~p~~~~~~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~~~i~ 149 (318)
T PF10324_consen 104 YLSIKFPMSSRFQKLSKPKFAIIVILIVFIISFLFSIPYFFRYKIV 149 (318)
T ss_pred HHHHHhhccccccccCCCCeeeeehHHHHHHHHHHHHHhhceEEEE
Confidence 99999998754 345788888899999999999998888555443
No 47
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=97.34 E-value=0.00013 Score=69.10 Aligned_cols=115 Identities=11% Similarity=0.240 Sum_probs=80.7
Q ss_pred ccccccchHhHHHHHhhHhhhccchhHHHHHHH-hcCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeecc
Q psy11022 373 IIHITGNTYIAVEALADLLVSGVVIPVSAVMIL-AGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMP 451 (492)
Q Consensus 373 ~l~~~~~~~~~~la~~D~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~p 451 (492)
..+++.+.++.+-+++|++..+........... .+..-....++..-++................+.+|++||.||++|
T Consensus 28 ~~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~y~~~~~~~~gi~lls~nR~~ai~~P 107 (283)
T PF10323_consen 28 TFKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSYQTYYAAIYYNIAYYFLYIQCIGIVLLSLNRYLAICFP 107 (283)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhHHHHHHhhhheEEee
Confidence 367888999999999999986644333222222 0000011122223344455555566677788899999999999999
Q ss_pred C-cccceeehhHHHHHHHHHHHHHHHHhhhcccccee
Q psy11022 452 P-ECYTFFSKSHIILSVIMIWLVSILLTTLQFEKSIY 487 (492)
Q Consensus 452 ~-~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~ 487 (492)
. ++.+.-++.+.+.++++-|+.+.+.++|.+.++.+
T Consensus 108 ~~~~~~~~~~~~~~~i~~i~wi~p~li~~~~~~~~~~ 144 (283)
T PF10323_consen 108 TSRHTKFWQPAKIWIIILIQWIPPLLISLPFFFDTDF 144 (283)
T ss_pred cHHHhhhccccchhheeeeeehhhhhheeeeeccCce
Confidence 9 88888899999999999999999999987644433
No 48
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].
Probab=97.11 E-value=0.019 Score=54.42 Aligned_cols=183 Identities=16% Similarity=0.223 Sum_probs=108.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhcccccccccccc--
Q psy11022 116 CHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKVGPDYCSKKVS-- 193 (492)
Q Consensus 116 C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~C~~~~~-- 193 (492)
=+...+......+.+...-.+.++-|.+.+..|.++ +...++-.....-++.++++..+.|.+. ..+.|..-..
T Consensus 103 Lk~l~~~~~~~~Y~s~lf~~Lfc~~Rl~il~~p~~~-~~i~~~i~~~~~P~i~i~p~~~~f~~~p---a~G~C~Ql~~Pf 178 (307)
T PF10322_consen 103 LKILVFFYYYFNYSSMLFPVLFCLLRLIILYSPRNH-KKICRKIFRIWIPFIFIYPFCFTFPMFP---ALGYCRQLDPPF 178 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHheeCccch-hHHHHhHHHHHHHHHHHHHHHHHHHccC---CcEEEEeCCCCC
Confidence 466678888889999999999999999999999544 4455555566666777777777766543 3344543311
Q ss_pred ------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-c-CCCCCCCcccchhhHHHHHHHHHHHHHHH
Q psy11022 194 ------------YMELYQGIIGSLFFFIPIIITCILYMKITYKVRLAR-Q-NPSFKPPVIFGWDYSLMLTNMYSYIMFIV 259 (492)
Q Consensus 194 ------------~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~i 259 (492)
...............+-.+.+++.+..+++++||.+ + ...++.++.+|.|+..+.|++.+++-++.
T Consensus 179 ~fGAI~I~~~~~~~~~~~~~~~l~~s~~~~~~iii~N~lm~~Klr~~k~~l~~~~~s~~~~KAE~SLT~Tmi~mliP~i~ 258 (307)
T PF10322_consen 179 PFGAIIITSTGSWFNIRNSIFHLFFSIFWMISIIILNILMFFKLRKLKSSLSSQRRSKQSRKAERSLTLTMISMLIPYIT 258 (307)
T ss_pred CCCEEEEEEEcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhcccchhhheeHHHHHHHHHHHHHH
Confidence 112222333455566667788889999999999876 2 22334445556666666666666544432
Q ss_pred HhHhHHHHHHHHhccCCcchHHHHHH---HHHhhcccccchhhhhcChHHHH
Q psy11022 260 LWIPFCIVMSVASFRHQITPSFYYLA---WLALSKSCINSVLYCISNRHFRN 308 (492)
Q Consensus 260 ~~~P~~i~~~~~~~~~~~~~~~~~~~---~l~~~~s~~nP~IY~~~~~~~R~ 308 (492)
..+..+.....+ ....+... +..-+..++=|.++.+..+-||+
T Consensus 259 ----n~i~~i~~~~~~--~~~~y~~~iRp~~~D~~~~iv~w~FY~THP~Fkk 304 (307)
T PF10322_consen 259 ----NGIISISFLFFP--SYSSYILLIRPFGNDCRTCIVPWYFYLTHPIFKK 304 (307)
T ss_pred ----HHHHHHHHhcCc--hHHHHHHHHhhhhhccceeEEEEEeeecChhhcC
Confidence 222222222212 22222221 23335555667777776666654
No 49
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=96.62 E-value=0.25 Score=47.38 Aligned_cols=153 Identities=9% Similarity=0.062 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHhhhcceeeeeeeeccccccchhhHHHHHHHHHHHhhhchhcHHHHH-HHhc-CC-----C---cc
Q psy11022 40 RVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVM-ILAG-IK-----Q---AE 109 (492)
Q Consensus 40 ~~~~~~~~~~~~i~gl~gN~~vi~~i~~~~~lr~~~~~~l~~Lai~Dll~~~~~~p~~~~~-~~~~-~~-----~---~~ 109 (492)
+...-....+.+.+..+.+.+.+..+..+++..+-+..-+.-++++-.+.++..+...+.. .... .. . ..
T Consensus 8 ~~~~~~wi~~~s~ic~~~t~ftv~Tf~id~~rf~yPerpi~fl~~Cy~~~s~~~l~~~~~g~~~i~C~~~~~~~~~~~~~ 87 (328)
T PF01534_consen 8 KEFARIWIGVWSVICFISTLFTVLTFLIDRSRFRYPERPIIFLSFCYFIVSLGYLIRFILGRESIACRSQDGTERILVQD 87 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccchhhHHHHHHHHHHHHHHHHHhccCCCcCCCcCCCCceeEeec
Confidence 3344555556666666667666666655655333335666667777777664443333321 0000 00 0 12
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhc-----cc
Q psy11022 110 PIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYK-----VG 184 (492)
Q Consensus 110 ~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~-----~~ 184 (492)
..++..|.+...+.+++..++..--+.+++.=|++-..- ..++. -.++....-+++|.++.+.++..+... .-
T Consensus 88 ~~~~~~C~~~F~l~Yyf~mAa~~WWviLt~~W~lsa~~k-w~~e~-i~~~s~yfH~~aW~iP~~~ti~vL~~~~VdgD~l 165 (328)
T PF01534_consen 88 GLENSSCTVVFLLLYYFGMAASLWWVILTLTWFLSAGLK-WGSEA-IEKKSSYFHLVAWGIPAVLTIAVLALRKVDGDEL 165 (328)
T ss_pred CCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc-cCcch-hhhhcchhhhHHhhhhHHHHHHHHHhcccccccc
Confidence 334577999999999888888888888899999997654 22232 335566678999999999887766542 23
Q ss_pred cccccccccc
Q psy11022 185 PDYCSKKVSY 194 (492)
Q Consensus 185 ~~~C~~~~~~ 194 (492)
.+.|.....+
T Consensus 166 tGiC~Vg~~~ 175 (328)
T PF01534_consen 166 TGICFVGNQN 175 (328)
T ss_pred cceeEEeCCC
Confidence 4579877544
No 50
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=96.25 E-value=0.25 Score=46.49 Aligned_cols=188 Identities=12% Similarity=0.043 Sum_probs=102.0
Q ss_pred cchhhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q psy11022 73 RRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECY 152 (492)
Q Consensus 73 ~~~~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~ 152 (492)
.++-.++.-+.++++...+- ......+. -.--+.+|.+..-+.......-....++|+-.-| .|..+....
T Consensus 24 ~~~~~li~Wl~l~nl~~~IN-------aiIW~~n~-~~~~~~wCDI~~kl~~~~~~g~~~a~lcI~r~L~-~I~s~r~~~ 94 (283)
T PF02076_consen 24 IGTCSLIFWLFLSNLIYFIN-------AIIWRDND-INWWPVWCDISTKLIIGSSVGIPAASLCIMRRLY-RIASARAVS 94 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHh-------hhhcCCCC-CccCceeeeehHHHHHHHHHHHHHHHHHHHHHHH-HHhccccCC
Confidence 46677888888888877621 12222221 1112278999998888887776666666665544 355542222
Q ss_pred c--ccchhhHHhHhhHHHHHHHHHhhhhhhhcc------cccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11022 153 T--FFSKSHIILSVIMIWLVSILLTTLQFIYKV------GPDYCSKKVSYMELYQGIIGSLFFFIPIIITCILYMKITYK 224 (492)
Q Consensus 153 ~--~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~------~~~~C~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~ 224 (492)
. ..++|+..+=.++++.++++.....++.+. +..-|.......-.......+--.++.++...++-.- +++
T Consensus 95 ~~~~~~rr~~~~d~~i~~g~Pil~m~l~yivQ~~Rf~I~e~~GC~~~~~~s~~~~~l~~iwp~i~~lia~vYa~lt-~~~ 173 (283)
T PF02076_consen 95 LSRSEKRRRIIIDLLICFGIPILQMALHYIVQGHRFDIVEDVGCYPAIYPSWPTIFLFIIWPPIFSLIAAVYAILT-LRR 173 (283)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeEecccCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 1 223666777788888888888777666433 3345777654433333333333333333333333322 333
Q ss_pred HHHhhcC-CCCCCCc-ccchhhHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q psy11022 225 VRLARQN-PSFKPPV-IFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVA 271 (492)
Q Consensus 225 l~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~~~~ 271 (492)
..|++++ ++.-+.+ ..-+.+|..| +..+.++.+++.+|..+..+..
T Consensus 174 f~~rr~~f~~~l~~s~s~l~~~Rf~R-L~~la~~~i~~~~P~~i~~~v~ 221 (283)
T PF02076_consen 174 FIRRRKQFRDILSSSNSGLNTSRFFR-LLALALVIILIYLPLSIYYLVS 221 (283)
T ss_pred HHHHHHHHHHHHhcCCCcccHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333322 1111111 1112334444 6667778888899998888873
No 51
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=95.74 E-value=0.03 Score=53.14 Aligned_cols=107 Identities=15% Similarity=0.188 Sum_probs=81.5
Q ss_pred cccccccchHhHHHHHhhHhhhccchhHHHHHHHhcCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeecc
Q psy11022 372 SIIHITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMP 451 (492)
Q Consensus 372 ~~l~~~~~~~~~~la~~D~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~p 451 (492)
+++|++.+-++.-++++|++..+..+.. .... .-..+...|.+++++..++..++.+=.++||++=|..+++.
T Consensus 35 k~~r~~~~rli~yl~~~~ll~~v~~~~~----~~~~---~~~~~s~lC~~Qafliq~f~~as~lWt~~iA~nly~~~~~~ 107 (303)
T PF05462_consen 35 KRLRKPINRLIFYLSIANLLTNVASMIM----TLSP---SAGENSFLCQFQAFLIQFFMLASFLWTLCIAFNLYLTFVKR 107 (303)
T ss_pred HHhCccHHHHHHHHHHHHHHHHHHHHHH----Hhcc---cCCCCCcchhhHhHHHHHhhHHHHHHHHHHHHHhhheeEEc
Confidence 3678888888889999999876433221 1112 11245678999999999999999988899999999999986
Q ss_pred CcccceeehhHHHHHHHHHHHHHHHHhhhccccceeee
Q psy11022 452 PECYTFFSKSHIILSVIMIWLVSILLTTLQFEKSIYSR 489 (492)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~ 489 (492)
... .++.-....+.+|.++++.++.++..+.|..
T Consensus 108 ~~~----~~k~e~~Y~l~~wGiPli~a~i~l~~~~~g~ 141 (303)
T PF05462_consen 108 YDE----LEKLEKYYHLVCWGIPLIPAVIPLIGNDYGP 141 (303)
T ss_pred Ccc----HHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 432 2555567889999999999998887777654
No 52
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].
Probab=95.58 E-value=0.0066 Score=50.48 Aligned_cols=106 Identities=8% Similarity=0.111 Sum_probs=68.9
Q ss_pred hhHHHHHHHHHHHhhhchhcHHHHHHHhcCCCccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc
Q psy11022 76 NTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFF 155 (492)
Q Consensus 76 ~~~l~~Lai~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~ 155 (492)
-.++.++.+++++..+...................+.+..=+....+..+++....+...+|+++|-..|.+|.+...++
T Consensus 4 ~vYI~~M~i~gi~~~~~~~v~~~~~~~~~~~~Y~~yr~~~G~~~TL~~tf~Yl~plfltvLMti~Ri~iV~~P~~~~~~F 83 (153)
T PF03383_consen 4 FVYIYNMIICGIIDKFFIFVDFWIPLFLPDEGYEEYRQFFGKEVTLFGTFSYLHPLFLTVLMTINRIYIVLFPFGSEIWF 83 (153)
T ss_pred EEEEeHHHHhhHHHHHHHHhhhhhhhccChhHHHHHHHHhCCEEeeeehHHHHHHHHHHHHHHHhheEEEEecCCCcccc
Confidence 35677888888877644222222111111111111111222333456778888899999999999999999998766689
Q ss_pred chhhHHhHhhHHHHHHHHHhhhhhhh
Q psy11022 156 SKSHIILSVIMIWLVSILLTTLQFIY 181 (492)
Q Consensus 156 t~~~~~~~i~~~w~~s~~~~~~~~~~ 181 (492)
|.++.+..+.+..+..+..-+.++..
T Consensus 84 s~~kl~~YC~~i~i~~~i~LlIPy~S 109 (153)
T PF03383_consen 84 SDKKLWIYCGIIAILSFISLLIPYFS 109 (153)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhcCC
Confidence 99999999988777777766666553
No 53
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].
Probab=94.95 E-value=0.024 Score=47.23 Aligned_cols=59 Identities=10% Similarity=0.205 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHhhhceeeeeccCcccceeehhHHHHHHHHHHHHHHHHhhhccc
Q psy11022 425 LTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFE 483 (492)
Q Consensus 425 ~~~~~~~~s~~~l~~is~dRy~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~ 483 (492)
++.++.....+.-..|+++|-..|.+|.+....+|.+|.+.-+.+..++.+..-+.|+.
T Consensus 50 ~~tf~Yl~plfltvLMti~Ri~iV~~P~~~~~~Fs~~kl~~YC~~i~i~~~i~LlIPy~ 108 (153)
T PF03383_consen 50 FGTFSYLHPLFLTVLMTINRIYIVLFPFGSEIWFSDKKLWIYCGIIAILSFISLLIPYF 108 (153)
T ss_pred eehHHHHHHHHHHHHHHHhheEEEEecCCCccccccchhHHHHHHHHHHHHHHHHhhcC
Confidence 44556777888888999999999999998666799999999999888888887777763
No 54
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=94.90 E-value=0.065 Score=39.05 Aligned_cols=67 Identities=13% Similarity=0.263 Sum_probs=49.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHhH-hHHHHHHHHhc--c-CCcchHHHHHHHHHhhcccccchhhhhcChHH
Q psy11022 240 FGWDYSLMLTNMYSYIMFIVLWI-PFCIVMSVASF--R-HQITPSFYYLAWLALSKSCINSVLYCISNRHF 306 (492)
Q Consensus 240 ~~~~~~~~~~~~~~~~~f~i~~~-P~~i~~~~~~~--~-~~~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~ 306 (492)
+++-+|..+.+++--++|+++|+ |...-...... . ....+...+...+..+|..+|-++|.++-|..
T Consensus 4 r~~i~r~lr~mfiYP~~Yi~lwlfP~~~~~~~~~~~~~~~p~~~l~~i~~~~~~~~G~VD~lvf~~~erpw 74 (76)
T PF11970_consen 4 RKRIRRQLRSMFIYPLVYIVLWLFPFAAHRMQYMYEIGHGPSFWLFCIAGFMQPSQGFVDCLVFTLRERPW 74 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHccCHHHhhheeeecccC
Confidence 34456778888999999999999 86655554442 2 22345566677888899999999999876543
No 55
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans. The function of this family is unknown.
Probab=94.64 E-value=0.31 Score=42.32 Aligned_cols=109 Identities=16% Similarity=0.168 Sum_probs=57.7
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhc--cccccc
Q psy11022 111 IKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYK--VGPDYC 188 (492)
Q Consensus 111 ~~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~--~~~~~C 188 (492)
..-..|.+..-+...+........+++|+|||+-|+.-.| .+.......-.++-+.-+..++..+..+ ..++.|
T Consensus 112 ytI~vCSflk~f~S~t~s~~~vip~aVAIyRy~~VV~k~r----l~~~f~v~v~~iit~~~~~~a~~~~~~G~~t~NdiC 187 (226)
T PF06681_consen 112 YTIFVCSFLKNFTSSTTSCAQVIPVAVAIYRYLIVVLKKR----LSVWFVVVVHVIITFPFIFYAILNFPFGEPTPNDIC 187 (226)
T ss_pred EEEEeehHHHhHHHHHhhhhccchhhhhhhhhheeeeccc----CCchHHHHHHHHHHHHHHHHHHHhcccCCCCcCCee
Confidence 3557799888877777766666677899999999987633 2222222222222222222233322222 345678
Q ss_pred cccccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11022 189 SKKVSY--MELYQGIIGSLFFFIPIIITCILYMKITYKVRL 227 (492)
Q Consensus 189 ~~~~~~--~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~ 227 (492)
..-.-. .....+.. ...++ ++-++.+..+++.+||
T Consensus 188 a~L~fs~~~~~Vri~~---tl~l~-lfAVl~N~~i~~fvkk 224 (226)
T PF06681_consen 188 AILRFSKSMELVRISY---TLGLN-LFAVLLNFVILRFVKK 224 (226)
T ss_pred eEEEEccchHHHHHHH---HhHHH-HHHHHHHHhHheeeec
Confidence 876322 12222222 22222 3344456666666554
No 56
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=94.50 E-value=0.62 Score=41.69 Aligned_cols=47 Identities=11% Similarity=0.082 Sum_probs=40.0
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc
Q psy11022 108 AEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTF 154 (492)
Q Consensus 108 ~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~ 154 (492)
+...++..++.......+....+++.-..+++||++|...--+|.+.
T Consensus 77 dLiI~~~~~K~~h~~~~flmT~~ml~PigftIERfiAl~~A~~YE~~ 123 (236)
T PF02175_consen 77 DLIIDPTLFKYGHLTGLFLMTIPMLFPIGFTIERFIALKMAEKYENT 123 (236)
T ss_pred eEEEchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccC
Confidence 45666777899999999999999999999999999999987555553
No 57
>KOG4289|consensus
Probab=90.70 E-value=1.9 Score=48.11 Aligned_cols=178 Identities=15% Similarity=0.157 Sum_probs=101.2
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhHHhHhhHHHHHHHHHhhhhhhhcccccccccc
Q psy11022 112 KEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKVGPDYCSKK 191 (492)
Q Consensus 112 ~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~~~~~~~C~~~ 191 (492)
.++.|.+...+.++.+.++...+.+-++.-|.....-.. ........++.|.++.+++...+..+ +.|+..
T Consensus 2222 nq~~CtvvailLhf~~~stFaWlfl~gLhlYRml~e~v~------tg~mrfy~~vGwgvPa~itglavgld---DfCwlS 2292 (2531)
T KOG4289|consen 2222 NQFYCTVVAILLHFTYLSTFAWLFLEGLHLYRMLTENVD------TGPMRFYYLVGWGVPALITGLAVGLD---DFCWLS 2292 (2531)
T ss_pred CchhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCC------CCceeEEEEeecchhhheeeeeeccc---ceeecc
Confidence 566799999999998888888888888777777765311 11122235667888877765554433 678776
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q psy11022 192 VSYMELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVA 271 (492)
Q Consensus 192 ~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~~P~~i~~~~~ 271 (492)
......+ .+..|+.+.+.+....+...-|.+-. ++.+.-..|-..+..+..+++++..-..|+-.. .
T Consensus 2293 ~h~~LiW-------sfagPigl~i~ms~~~~~lsa~vSc~-~k~~~f~kK~~v~~lq~~fl~llllsatwl~~l-----l 2359 (2531)
T KOG4289|consen 2293 PHDTLIW-------SFAGPIGLVILMSFYAAALSARVSCH-KKYQVFVKKGNVSVLQHSFLLLLLLSATWLLGL-----L 2359 (2531)
T ss_pred cchheee-------eecccceeeehHHHHHHHHHHHHhhh-hhheeeeeccchhhhHHHHHHHHHHHHHHHHHH-----H
Confidence 4321111 22333333222222222111111000 000001112233455666666666666665432 2
Q ss_pred hccCCcchHHHHHHHHHhhcccccchhhhhcChHHHHHHH
Q psy11022 272 SFRHQITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYI 311 (492)
Q Consensus 272 ~~~~~~~~~~~~~~~l~~~~s~~nP~IY~~~~~~~R~~~~ 311 (492)
...+..-..+++...+.++...+--++|+..|++.|++.+
T Consensus 2360 ~vn~~~l~fhyl~a~~~~lqg~~Vlll~cVl~~~~raa~~ 2399 (2531)
T KOG4289|consen 2360 AVNPDPLEFHYLFASIIGLQGPFVLLLWCVLNIEVRAALK 2399 (2531)
T ss_pred hcCCchHHHHHHHHHHHHhhhHHHHHHHhhhcHHHHHhhc
Confidence 3345566677777777777777778889999999999987
No 58
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=82.34 E-value=2.2 Score=39.91 Aligned_cols=83 Identities=10% Similarity=-0.042 Sum_probs=50.2
Q ss_pred hHhHHHHHhhHhhhccchhHHHHHHHhcCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeeccCcccceee
Q psy11022 380 TYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFS 459 (492)
Q Consensus 380 ~~~~~la~~D~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~p~~~~~~~~ 459 (492)
.++--..+.|.+.|....+............+....+..=-..+.-....+.........||+||-+|+..|..|++...
T Consensus 42 ~LfY~Rf~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~p~~~~~~iR~~l~~~Ia~dR~~A~~fPI~y~~~r~ 121 (273)
T PF10316_consen 42 SLFYFRFAIDVFYGFSVFIYLIYYILFSLFPEFLDYKNLIFYIGWPSSNLGSIRSILALIIALDRVFAVYFPIFYHNYRK 121 (273)
T ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhccccEEeehhhhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCc
Confidence 34445678999999888776666655321111110111111122233445566777888999999999999988776554
Q ss_pred hhH
Q psy11022 460 KSH 462 (492)
Q Consensus 460 ~~~ 462 (492)
+-.
T Consensus 122 k~~ 124 (273)
T PF10316_consen 122 KIP 124 (273)
T ss_pred ccc
Confidence 433
No 59
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=81.99 E-value=3.4 Score=38.36 Aligned_cols=103 Identities=16% Similarity=0.231 Sum_probs=72.0
Q ss_pred cccccccchHhHHHHHhhHhhhcc-chhHHHHHHHhcCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeec
Q psy11022 372 SIIHITGNTYIAVEALADLLVSGV-VIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCM 450 (492)
Q Consensus 372 ~~l~~~~~~~~~~la~~D~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~ 450 (492)
++..+|.+.-+.+||+++.++-+. .+|.... ..+.+ .+++..||+..++.=..-..|+.+-+..|.-.-+.|.-
T Consensus 5 ~~r~kp~dlIl~hLa~aN~lvLl~rGip~~~~--~~~~~---~~~d~gCK~v~Y~~RV~RglSictTCLLSvfQAItISP 79 (265)
T PF03402_consen 5 GHRLKPIDLILIHLALANILVLLSRGIPQTMA--FFGWK---FFDDIGCKIVFYIYRVARGLSICTTCLLSVFQAITISP 79 (265)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHhhHHHHHH--Hhhcc---cCCCceeeeeeeehHHhchhhHHhhhHHHHHhhEEEec
Confidence 345678999999999999988543 4554322 33311 26899999999999999999999999998876666543
Q ss_pred cCc---ccceeehhHHHHHHHHHHHHHHHHhh
Q psy11022 451 PPE---CYTFFSKSHIILSVIMIWLVSILLTT 479 (492)
Q Consensus 451 p~~---~~~~~~~~~~~~~~~~~W~~~~~~~~ 479 (492)
.-. .-+...++.....+...|++-.++..
T Consensus 80 ~~s~w~~lK~k~pk~i~~~~~~~Wilnlli~~ 111 (265)
T PF03402_consen 80 SNSRWAELKVKAPKYIGPSCLFCWILNLLINI 111 (265)
T ss_pred CCchhhhhhhhcCCccccHHHHHHHHHHhhhc
Confidence 221 11223455666677788999887654
No 60
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=79.80 E-value=17 Score=34.65 Aligned_cols=38 Identities=11% Similarity=0.078 Sum_probs=19.2
Q ss_pred HHHHHHhh---cCCCCCCCcccchhhHHHHHHHHHHHHHHH
Q psy11022 222 TYKVRLAR---QNPSFKPPVIFGWDYSLMLTNMYSYIMFIV 259 (492)
Q Consensus 222 ~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i 259 (492)
.|+.||.+ ...+..+.+...+-.|.....++.-..|++
T Consensus 208 ~rH~r~M~~n~~g~~~ps~~aH~~a~k~~~sfl~ly~~~~~ 248 (303)
T PF05296_consen 208 WRHMRRMQKNATGFRDPSTEAHIRAIKTMISFLILYIIYFL 248 (303)
T ss_pred HHHHHHhhCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444443 333455555555666665555544444443
No 61
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=78.54 E-value=5.4 Score=37.90 Aligned_cols=102 Identities=19% Similarity=0.251 Sum_probs=72.1
Q ss_pred ccccchHhHHHHHhhHhhhccchhHHHHHHHhcC--------cCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhcee
Q psy11022 375 HITGNTYIAVEALADLLVSGVVIPVSAVMILAGI--------KQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYV 446 (492)
Q Consensus 375 ~~~~~~~~~~la~~D~~~~~~~~p~~~~~~~~~~--------~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ 446 (492)
-+...+++.|-|+.|+..++..+- ........+ ..+-.+|+..|.....+...+...+.+.+.+--..||.
T Consensus 31 l~~~~~~l~~~~~~~~~~~~~~~~-~q~R~i~~~~~~~~~~~GpC~~~~~~~C~~~y~~~~~~~~~s~~~i~~sf~yRy~ 109 (292)
T PF10317_consen 31 LRTYSILLLNTAIFDLISIISAFL-TQPRIIPNGTSIAVISYGPCRYFGPWFCFFCYHIMLHFSIHSGWSIILSFYYRYY 109 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hhhhccCCCCcEEEEeeecceecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999988654332 222222211 12345788889888888878888888888888889999
Q ss_pred eeeccCcccceeehhHHHHHHHHHHHHHHHHhhhcc
Q psy11022 447 RLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQF 482 (492)
Q Consensus 447 ai~~p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~ 482 (492)
.+.++-. ++++...+++..+..++...+..+
T Consensus 110 iL~~~~~-----~~~~~i~~~~l~~~p~~~~~i~~~ 140 (292)
T PF10317_consen 110 ILRNPSP-----SRKRIIFICILIYIPSFSMLIFFF 140 (292)
T ss_pred HhcCCCC-----chhHHHHHHHHHHHHHHHHHHHHh
Confidence 9988753 567777788888888877665444
No 62
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=74.95 E-value=0.95 Score=41.62 Aligned_cols=102 Identities=13% Similarity=0.107 Sum_probs=0.0
Q ss_pred ccccccchHhHHHHHhhHhhhccchhHHHHHHHhcCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeeccC
Q psy11022 373 IIHITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPP 452 (492)
Q Consensus 373 ~l~~~~~~~~~~la~~D~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~p~ 452 (492)
++|+..+....||++++++..+..+. .......+ .-...+..|...+.+.+.+..++..=+.++++|=|..++++.
T Consensus 30 ~lr~~~~~i~~~l~~sll~~~~~~l~-~~~~~~~~---~~~~~~~~C~~~a~~~hy~~la~f~Wm~~~~~~l~~~~~~~~ 105 (242)
T PF00002_consen 30 KLRSFRNKIHLNLCLSLLLANLSFLI-GISQTFSP---ISTTNHCLCRAIAILLHYFFLASFFWMLVEAFYLYRLLVKVF 105 (242)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhcccchhhhhhhHHHHHHHHHHHhe-ehhhcccc---ccccccccchhhhhHhHHHHHHHHHHHHHHHHHhheeEEEee
Confidence 44555577788999999887553321 11111111 000112359999999999999999889999999999998884
Q ss_pred cccceeehhHHHHHHHHHHHHHHHHhhhcc
Q psy11022 453 ECYTFFSKSHIILSVIMIWLVSILLTTLQF 482 (492)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~ 482 (492)
.. .+++.+...+..|.+++++.....
T Consensus 106 ~~----~~~~~~~~~~~gwg~P~~iv~i~~ 131 (242)
T PF00002_consen 106 NS----SRRRFWWYYLIGWGIPALIVVISV 131 (242)
T ss_dssp ------------------------------
T ss_pred cc----cchhhheeeeeeecCcceeeeeee
Confidence 31 244556677788999987766444
No 63
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=71.86 E-value=9.7 Score=36.79 Aligned_cols=109 Identities=12% Similarity=0.072 Sum_probs=66.0
Q ss_pred cccccchHhHHHHHhhHhhhccchhHH---HHHHHh-cCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeee
Q psy11022 374 IHITGNTYIAVEALADLLVSGVVIPVS---AVMILA-GIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLC 449 (492)
Q Consensus 374 l~~~~~~~~~~la~~D~~~~~~~~p~~---~~~~~~-~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~ 449 (492)
.|.-..+++....++.++-++.-...- +..+.. .+.-+...+..-|-.......+.......+..++++||++|-+
T Consensus 47 ~H~N~ril~~~~~~~~l~~~~~r~~~h~~~l~~~~~~~~~Cd~~~~~~~C~~lR~~~~~~~~~~~~t~v~l~IER~iAT~ 126 (324)
T PF10292_consen 47 FHFNTRILFIVHCFSFLIHCTGRIILHTYDLYNYFFPDDPCDMIPSTYRCFILRIPYNFGLFLVSFTTVSLVIERTIATF 126 (324)
T ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444556666666665543222211 122221 1111123455568777778888888899999999999999999
Q ss_pred ccCcccceeehhHHHHHHHHHHHHHHHHhhhccc
Q psy11022 450 MPPECYTFFSKSHIILSVIMIWLVSILLTTLQFE 483 (492)
Q Consensus 450 ~p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~ 483 (492)
+.-+|.+. ++.....++.+-|.+++......+.
T Consensus 127 ~~~~YE~~-~~~~Gi~l~~~qi~is~~~~~~~~~ 159 (324)
T PF10292_consen 127 FSKSYEKS-GKWLGILLAFFQILISLLILYFVYS 159 (324)
T ss_pred hHHHhcCC-CccHHHHHHHHHHHHHHHHHHHHHh
Confidence 99888854 4444455666667777665544443
No 64
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=69.10 E-value=4.2 Score=38.93 Aligned_cols=88 Identities=9% Similarity=0.178 Sum_probs=56.2
Q ss_pred ccccccchHhHHHHHhhHhhhccchhHHHHHHHhcCcCcccccccchhHHH------HHHHHHHHHHHHHHHHHhhhcee
Q psy11022 373 IIHITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQW------FLTLLCSLVTVWTLAMIAMENYV 446 (492)
Q Consensus 373 ~l~~~~~~~~~~la~~D~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~------~~~~~~~~~s~~~l~~is~dRy~ 446 (492)
..|++.+-.+.-||+.|++.....-...-.... .|...|+.-. .+....=.++...-..+++||..
T Consensus 62 ~~k~~~ykiM~~L~i~Di~~l~~~si~tG~l~i--------~G~vfC~~P~~~~i~G~~~~~~W~~~c~~~i~LainR~~ 133 (313)
T PF10321_consen 62 LFKMSCYKIMFFLAIFDIIQLFINSIITGILAI--------FGAVFCSYPRFIYIMGCIALGSWCGSCIICILLAINRCC 133 (313)
T ss_pred cccCcHHHHHHHHHHHHHHHHHhhhhhhhHHHh--------cCccccCCchHhhhhhccchhhHHHHHHHHHHHHHHHHH
Confidence 446889999999999999875433221111111 3555665433 33333444666667788999999
Q ss_pred eeeccCcccceeehhHHHHHHH
Q psy11022 447 RLCMPPECYTFFSKSHIILSVI 468 (492)
Q Consensus 447 ai~~p~~~~~~~~~~~~~~~~~ 468 (492)
-+.+|......+..++....+.
T Consensus 134 ~l~~~~~~~~~F~g~~~~~~l~ 155 (313)
T PF10321_consen 134 ELNFPFKLKFLFEGKRTYIVLF 155 (313)
T ss_pred HHhcchhhHHhhcCceEEeeeh
Confidence 9999987777777666544433
No 65
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=58.85 E-value=56 Score=31.86 Aligned_cols=91 Identities=24% Similarity=0.206 Sum_probs=58.4
Q ss_pred HhHHHHHhhHhhhccchhHHHHHHHhcCcCccc----------ccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeec
Q psy11022 381 YIAVEALADLLVSGVVIPVSAVMILAGIKQAEP----------IKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCM 450 (492)
Q Consensus 381 ~~~~la~~D~~~~~~~~p~~~~~~~~~~~~~~~----------~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~ 450 (492)
-+..||+||++.++-.+.......... .... .....|.....-..+++.++-+=+.+.|+|=|+.+-+
T Consensus 70 Il~~la~aDlLaclGVivRS~vWl~~p--~~~~s~s~~~~~d~wp~afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~~~ 147 (405)
T PF02101_consen 70 ILFWLAVADLLACLGVIVRSSVWLGFP--NFIDSISDVNGTDIWPAAFCVGSSMWIQLFYSATFWWTFCYAVDVYLVIRR 147 (405)
T ss_pred hHHHHHHHHHHhhhhHHHHhhhhhcCC--cccccccCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeec
Confidence 567999999998765544444332221 1110 1335798887777789999999999999999998754
Q ss_pred cCcccceeehhHHHHHHHHHHHHHHHHhh
Q psy11022 451 PPECYTFFSKSHIILSVIMIWLVSILLTT 479 (492)
Q Consensus 451 p~~~~~~~~~~~~~~~~~~~W~~~~~~~~ 479 (492)
--. +.+.+.-=..+|.++.++..
T Consensus 148 ~ag------~~~~~lYH~~aWgl~~lL~~ 170 (405)
T PF02101_consen 148 SAG------RSTIWLYHMMAWGLPALLCA 170 (405)
T ss_pred cCC------CcchhHHHHHHHHHHHHHHH
Confidence 321 11223444667777776543
No 66
>PF10325 7TM_GPCR_Srz: Serpentine type 7TM GPCR chemoreceptor Srz; InterPro: IPR018817 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class z (Srz), a solo family amongst the superfamilies of chemoreceptors [, ]. The genes encoding Srz appear to be under strong adaptive evolutionary pressure [].
Probab=56.91 E-value=1.7e+02 Score=27.20 Aligned_cols=109 Identities=17% Similarity=0.342 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cccccchhhHHhHhhHHHHHHHHHhhhhhhh---cccccccccccccc
Q psy11022 120 WFLTLLCSLVTVWTLAMIAMENYVRLCMPPE-CYTFFSKSHIILSVIMIWLVSILLTTLQFIY---KVGPDYCSKKVSYM 195 (492)
Q Consensus 120 ~~~~~~~~~~s~~~l~~ia~dRy~aI~~P~~-~~~~~t~~~~~~~i~~~w~~s~~~~~~~~~~---~~~~~~C~~~~~~~ 195 (492)
.........+--..+.++|++|++---.|-. .....+++.....+....+...+-.+..... ....+.+.. .+..
T Consensus 86 ~~~l~i~~~v~~lllsLLAIqRFllyFfP~~Ek~v~~~~k~~~~~I~~lY~~~~~k~i~~~~~~~~~~~~~~~~~-~~~~ 164 (267)
T PF10325_consen 86 IFILYIITQVFHLLLSLLAIQRFLLYFFPSSEKYVNFSQKNIKKIIWFLYIFFILKDIVFFIWYFISFNNESTEE-IETF 164 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchh-hhHH
Confidence 3444455566667889999999999999941 1223444544444444444433332221111 111111110 1111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy11022 196 ELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQ 230 (492)
Q Consensus 196 ~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~ 230 (492)
............ +-+.+....|+-|...+||.+.
T Consensus 165 ~~~~~~~~~~~~-~ll~~S~lLYIPI~isirK~~~ 198 (267)
T PF10325_consen 165 SYIYVIFYIILN-ILLFLSALLYIPIFISIRKLSH 198 (267)
T ss_pred HHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHhhc
Confidence 111111122222 3466677889999999998764
No 67
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=54.37 E-value=39 Score=31.36 Aligned_cols=106 Identities=11% Similarity=0.233 Sum_probs=62.5
Q ss_pred cccchHhHHHHHhhHhhhccchhHHHHHHHhcCcCcccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeeccCccc
Q psy11022 376 ITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECY 455 (492)
Q Consensus 376 ~~~~~~~~~la~~D~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~p~~~~ 455 (492)
.+...++.+|.++-+.++...+-+.++.-+.+..+.....+..-.+..+..-++.++-.+.-..||++|..-..+--+..
T Consensus 47 m~ffwFl~qlt~s~fi~S~lNl~inVPatlfsl~t~~~~~s~~f~~~Sy~idf~h~siLfsNlviaIqR~fVFFfr~~t~ 126 (305)
T PF04789_consen 47 MKFFWFLTQLTISVFIISSLNLLINVPATLFSLITKEFVQSELFIFMSYLIDFCHYSILFSNLVIAIQRFFVFFFRNLTD 126 (305)
T ss_pred chHHHHHHHHHHHHHHHHhhhheEeCcHHHHHhhhHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhheeeeehhhhh
Confidence 45667888999888887765443333332211100011111122222333334555666777899999987776444444
Q ss_pred ceeehhHHHHHHHHHHHHHHHHhhhc
Q psy11022 456 TFFSKSHIILSVIMIWLVSILLTTLQ 481 (492)
Q Consensus 456 ~~~~~~~~~~~~~~~W~~~~~~~~~~ 481 (492)
+.+.+.-.-+....+|++++..-...
T Consensus 127 ~~F~s~~iyiWL~~vWils~~v~~~l 152 (305)
T PF04789_consen 127 KVFESPVIYIWLLLVWILSIGVVYSL 152 (305)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHH
Confidence 55667777788889999998765533
No 68
>PF13853 7tm_4: Olfactory receptor
Probab=53.76 E-value=0.8 Score=38.34 Aligned_cols=79 Identities=14% Similarity=0.196 Sum_probs=46.0
Q ss_pred hHhhHHHHHHHHHhhhhhhhccccc--------ccc---------cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11022 162 LSVIMIWLVSILLTTLQFIYKVGPD--------YCS---------KKVSYMELYQGIIGSLFFFIPIIITCILYMKITYK 224 (492)
Q Consensus 162 ~~i~~~w~~s~~~~~~~~~~~~~~~--------~C~---------~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~ 224 (492)
.+.+..|+.+++..++......... .|. +.. ..+.+.........+.|+.++.++|.+|++.
T Consensus 5 ~l~~~~~~~~~~~~l~~~~~~~~l~~~nii~~f~c~~~ll~LaC~dt~-~~~~~~~~~~~~~~~~~~~~Il~SY~~Il~a 83 (144)
T PF13853_consen 5 LLAAGSWLSGLLNSLPHTLLTLSLCFCNIIHHFCCDPPLLKLACSDTS-INEIVGFVVAIFILLGPLLLILFSYIRILRA 83 (144)
T ss_pred hhhHHHHHHHHHHHHHHHHHHeeCCCCCCCcceeeCHHHhcccCCchh-hhheeeecccceeEEEEeeccccceeEEEeh
Confidence 4566778888877776654322111 122 111 1122333344466788999999999999998
Q ss_pred HHHhh-cCCCCCCCcccc
Q psy11022 225 VRLAR-QNPSFKPPVIFG 241 (492)
Q Consensus 225 l~~~~-~~~~~~~~~~~~ 241 (492)
+.|.+ +++++|+-++..
T Consensus 84 vlki~S~~~r~KAfsTC~ 101 (144)
T PF13853_consen 84 VLKIPSAEGRSKAFSTCS 101 (144)
T ss_pred hhcccccccccccccccc
Confidence 88874 333444433333
No 69
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=48.11 E-value=7.5 Score=36.38 Aligned_cols=60 Identities=15% Similarity=0.397 Sum_probs=42.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhceeeeeccCcccceeehhHHHHHHHHHHHHHHHH
Q psy11022 417 IMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILL 477 (492)
Q Consensus 417 ~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~~~ 477 (492)
...+...++...+..+.......||+||+-+|..|.+|.+.=+ |.....++.+.++.+..
T Consensus 79 ~~l~~~~~l~~~~~~~Q~~~~~~is~nR~t~v~~p~~~~~~W~-~~~~~~i~~i~~~p~~~ 138 (275)
T PF02118_consen 79 FFLNIFYFLQYYFAYVQYLSTILISLNRFTSVLFPIRYEKFWK-RYYWIIIIIIFLLPFSF 138 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHH-hhhhhheeeeeehhHHH
Confidence 3456666677777788888889999999999999999887544 34444555555555443
No 70
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans. The function of this family is unknown.
Probab=46.51 E-value=80 Score=27.96 Aligned_cols=42 Identities=10% Similarity=0.065 Sum_probs=31.1
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeeccCccc
Q psy11022 414 IKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECY 455 (492)
Q Consensus 414 ~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~p~~~~ 455 (492)
..-.+|.+.--+........-...+++|+|||.-|+.-.|-+
T Consensus 112 ytI~vCSflk~f~S~t~s~~~vip~aVAIyRy~~VV~k~rl~ 153 (226)
T PF06681_consen 112 YTIFVCSFLKNFTSSTTSCAQVIPVAVAIYRYLIVVLKKRLS 153 (226)
T ss_pred EEEEeehHHHhHHHHHhhhhccchhhhhhhhhheeeecccCC
Confidence 356689887666655556666666789999999999877644
No 71
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=43.03 E-value=36 Score=21.50 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC
Q psy11022 207 FFIPIIITCILYMKITYKVRLARQN 231 (492)
Q Consensus 207 ~~ip~~ii~~~y~~i~~~l~~~~~~ 231 (492)
.++-+.+....-..|+..+++.+.+
T Consensus 11 vvIil~If~~iGl~IyQkikqIrgK 35 (49)
T PF11044_consen 11 VVIILGIFAWIGLSIYQKIKQIRGK 35 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333444444455677777776543
No 72
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=39.97 E-value=99 Score=23.97 Aligned_cols=13 Identities=8% Similarity=0.028 Sum_probs=7.3
Q ss_pred ceeeeeeeecccc
Q psy11022 59 GYMISSVMIEDHL 71 (492)
Q Consensus 59 ~~vi~~i~~~~~l 71 (492)
++.-++++|+|+-
T Consensus 80 ~IyYFVILRer~~ 92 (101)
T PF06024_consen 80 AIYYFVILRERQK 92 (101)
T ss_pred hheEEEEEecccc
Confidence 3445666666653
No 73
>PF00003 7tm_3: 7 transmembrane sweet-taste receptor of 3 GCPR; InterPro: IPR017978 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). GPCR family 3 receptors (also known as family C) are structurally similar to other GPCRs, but do not show any significant sequence similarity and thus represent a distinct group. Structurally they are composed of four elements; an N-terminal signal sequence; a large hydrophilic extracellular agonist-binding region containing several conserved cysteine residues which could be involved in disulphide bonds; a shorter region containing seven transmembrane domains; and a C-terminal cytoplasmic domain of variable length []. Family 3 members include the metabotropic glutamate receptors, the extracellular calcium-sensing receptors, the gamma-amino-butyric acid (GABA) type B receptors, and the vomeronasal type-2 receptors [, , , ]. As these receptors regulate many important physiological processes they are potentially promising targets for drug development. This entry represents the C-terminal region of family 3 GPCR receptor proteins, which contains the seven transmembrane region. The seven TM regions assemble in such a way as to produce a docking pocket into which such molecules as cyclamate and lactisole have been found to bind and consequently confer the taste of sweetness []. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=38.75 E-value=46 Score=30.26 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=17.4
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHH
Q psy11022 111 IKEIMCHVQWFLTLLCSLVTVWTLAMIA 138 (492)
Q Consensus 111 ~~~~~C~~~~~~~~~~~~~s~~~l~~ia 138 (492)
.++..|....+....+.......+.+=+
T Consensus 51 ~s~~~C~~r~~~~~l~f~l~~~~ll~K~ 78 (238)
T PF00003_consen 51 PSDILCTLRRWLFSLGFTLIFSALLAKT 78 (238)
T ss_pred cCCcEEEEeeeeeeeehHhhhhHHHHhh
Confidence 3455699988876666555555544444
No 74
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=37.18 E-value=46 Score=30.12 Aligned_cols=45 Identities=11% Similarity=0.104 Sum_probs=37.3
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeeccCccccee
Q psy11022 414 IKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFF 458 (492)
Q Consensus 414 ~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~p~~~~~~~ 458 (492)
..+..||.........+..+++.-..+++||++|.-+.-+|.+..
T Consensus 80 I~~~~~K~~h~~~~flmT~~ml~PigftIERfiAl~~A~~YE~~r 124 (236)
T PF02175_consen 80 IDPTLFKYGHLTGLFLMTIPMLFPIGFTIERFIALKMAEKYENTR 124 (236)
T ss_pred EchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccCc
Confidence 455567777777888888999999999999999999988887653
No 75
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=30.12 E-value=25 Score=33.47 Aligned_cols=64 Identities=16% Similarity=0.236 Sum_probs=35.8
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeeccCcccceeehhHHHHHHHHHHHHHHHHhh
Q psy11022 415 KEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTT 479 (492)
Q Consensus 415 ~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~~~~~ 479 (492)
+....+....+...+...+...++.-=+.||.++++|-+-+ .++.++.....+..-+.++.|+.
T Consensus 78 ~~~~~~~l~~~y~~~f~~~~~llaihFiYRY~av~~~~~l~-~f~~~~~~~w~~~~~~~~~~W~~ 141 (307)
T PF10326_consen 78 SKSIGQILLAIYCGCFGMSFSLLAIHFIYRYWAVCRPKKLR-YFSGWRFIIWFLIPIIFGIIWFL 141 (307)
T ss_pred cchheeehhhhhhhhHHHHHHHHHhHhhhheeeeccchhhc-cccccceeeeehhhhhhcccceE
Confidence 33344444445555555566666666679999999998643 24444443333333344444443
No 76
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=29.23 E-value=44 Score=32.35 Aligned_cols=64 Identities=9% Similarity=0.177 Sum_probs=41.9
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeeccCcccceeehhHHHHHHHHHHHHHHHHh
Q psy11022 414 IKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLT 478 (492)
Q Consensus 414 ~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~~~~ 478 (492)
+...-|..............++.-+++.+||..|-..|-.+++ .+......+.+.+-+.++...
T Consensus 96 f~~~eC~~~~~~~~~~~~~~~~~q~aL~idRl~at~~~~~~~~-~~~~~g~~l~i~~li~s~~~~ 159 (328)
T PF02117_consen 96 FTSSECFPYYYFYYFTNSGMIFIQFALTIDRLLATFFPKYYSK-KSYIIGIILSILVLILSFITG 159 (328)
T ss_pred eecCceeeeehHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhh-hhHHHHHHHHHHHHHHHHHHe
Confidence 4445687777777777777788899999999999998865442 333333333344444444444
No 77
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=25.49 E-value=98 Score=29.33 Aligned_cols=106 Identities=13% Similarity=0.068 Sum_probs=62.2
Q ss_pred ccccchHhHHHHHhhHhhhccchhHHHHHHHhcCcC-cccccccchhHHHHHHHHHHHHHHHHHHHHhhhceeeeeccCc
Q psy11022 375 HITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQ-AEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPE 453 (492)
Q Consensus 375 ~~~~~~~~~~la~~D~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~p~~ 453 (492)
|...-.+..-..+.|+..+.+..|+...-...+.-. -...-..-..++.++..........+...+=-+||.+++.+-+
T Consensus 40 k~~ll~~~~~~~~~d~~~~~l~~P~~~~P~~~~~~~G~l~~~gv~~~~q~~i~~~~~~~~~~S~~~lFe~R~~~i~~~~~ 119 (302)
T PF10318_consen 40 KWYLLNHHFWNFLLDLYLSFLIIPYFFFPSPAGYPLGILSYFGVPTPIQFYIGVTLLAFVGVSILSLFENRYQIIIRNRS 119 (302)
T ss_pred HHHHHHHHHHHHHHHHHhhhEEeeeeccchHHhhCCcchhhcccChHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccc
Confidence 333344444566899999998888666554433111 0111112356666666666666666677777899999997754
Q ss_pred ccceeehhHHHHHHHHHHHHHHHHhhhcc
Q psy11022 454 CYTFFSKSHIILSVIMIWLVSILLTTLQF 482 (492)
Q Consensus 454 ~~~~~~~~~~~~~~~~~W~~~~~~~~~~~ 482 (492)
+...++......+..++.+.....|.+
T Consensus 120 --~~~~~~~r~~~~~~~y~~~~~~~~~~~ 146 (302)
T PF10318_consen 120 --RSLWKKIRIIFIIFNYIIAFLFFIPIY 146 (302)
T ss_pred --cccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 223333344455555666666665555
No 78
>PF11683 DUF3278: Protein of unknown function (DUF3278); InterPro: IPR021697 This bacterial family of proteins has no known function.
Probab=21.36 E-value=4.5e+02 Score=21.32 Aligned_cols=42 Identities=14% Similarity=0.234 Sum_probs=21.9
Q ss_pred HHHHHHHhcCccccc-ccchhhHHhHhhHHHHHHHHHhhhhhh
Q psy11022 139 MENYVRLCMPPECYT-FFSKSHIILSVIMIWLVSILLTTLQFI 180 (492)
Q Consensus 139 ~dRy~aI~~P~~~~~-~~t~~~~~~~i~~~w~~s~~~~~~~~~ 180 (492)
+-|++-|.-|+.-++ ..-.|-........|.+.++..+..++
T Consensus 11 iK~fygI~GplDE~r~~ei~rign~a~i~l~~~~l~~~li~l~ 53 (129)
T PF11683_consen 11 IKRFYGIQGPLDEYRRQEINRIGNNAFIILFYYSLLLNLISLL 53 (129)
T ss_pred HHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777875332 222333333445556666665555544
No 79
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=21.08 E-value=98 Score=22.11 Aligned_cols=34 Identities=18% Similarity=0.338 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhh
Q psy11022 196 ELYQGIIGSLFFFIPIIITCI-LYMKITYKVRLAR 229 (492)
Q Consensus 196 ~~~~~~~~~~~~~ip~~ii~~-~y~~i~~~l~~~~ 229 (492)
..+..+..++..+.|++++.. +..++.+.+.+..
T Consensus 18 dP~~Fl~~vll~LtPlfiisa~lSwkLaK~ie~~e 52 (74)
T PF15086_consen 18 DPYEFLTTVLLILTPLFIISAVLSWKLAKAIEKEE 52 (74)
T ss_pred ChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677777888877664 5666666665543
Done!