RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11022
(492 letters)
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 82.4 bits (204), Expect = 9e-18
Identities = 45/247 (18%), Positives = 101/247 (40%), Gaps = 20/247 (8%)
Query: 70 HLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLV 129
LR N ++ A+ADLL + P + ++ G P + +C + FL ++
Sbjct: 8 KLRTPTNIFLLNLAVADLLFLLTLPPWALYYLVGGDW---PFGDALCKLVGFLFVVNGYA 64
Query: 130 TVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIY-------K 182
++ L I+++ Y+ + P + + ++++W++++LL+ ++ +
Sbjct: 65 SILLLTAISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLPPLLFSWLRTVEE 124
Query: 183 VGPDYCS---KKVSYMELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVI 239
C + S Y + L F +P+++ + Y I +R ++ + +
Sbjct: 125 GNVTTCLIDFPEESTKRSYTLLSTLLGFVLPLLVILVCYTLILRTLRKRARSGASQARAK 184
Query: 240 FGWDYSLMLTNMYSYIM--FIVLWIPFCIVMSVASFRHQITPSFYYLA-----WLALSKS 292
M ++ F++ W+P+ IV+ + S A WLA S
Sbjct: 185 RSSSKERKAAKMLLVVVVVFVLCWLPYHIVLLLDSLCPLSIWRLLPTALLITLWLAYVNS 244
Query: 293 CINSVLY 299
C+N ++Y
Sbjct: 245 CLNPIIY 251
Score = 54.2 bits (131), Expect = 3e-08
Identities = 19/104 (18%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Query: 379 NTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLA 438
N ++ A+ADLL + P + ++ G P + +C + FL ++ ++ L
Sbjct: 14 NIFLLNLAVADLLFLLTLPPWALYYLVGGDW---PFGDALCKLVGFLFVVNGYASILLLT 70
Query: 439 MIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQF 482
I+++ Y+ + P + + ++++W++++LL+
Sbjct: 71 AISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLPPL 114
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional.
Length = 323
Score = 40.3 bits (94), Expect = 0.001
Identities = 39/191 (20%), Positives = 75/191 (39%), Gaps = 36/191 (18%)
Query: 161 ILSVIMIWLVSILLTT-LQFIYKVGPDYCSKKVSYMELYQGIIGSLFF---------FIP 210
+L + W+ S++L+ +Y V K+ + + ++ S FF IP
Sbjct: 142 VLLSVAAWVCSVILSMPAMVLYYVDNTDNLKQCIFNDYHENFSWSAFFNFEINIFGIVIP 201
Query: 211 IIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSV 270
+II Y KI Y ++ + + I + +V W+PF IV+ +
Sbjct: 202 LIILIYCYSKILYTLKNCKNKNKTRSIKII----------LTVVTFTVVFWVPFNIVLFI 251
Query: 271 ASFR------------HQITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFHYCC 318
S + +I S ++ C+N ++Y ++F+ + N+F
Sbjct: 252 NSLQSVGLIDIGCYHFKKIVYSIDIAELISFVHCCVNPIIYAFVGKNFKKVFKNMF---- 307
Query: 319 CKTTVTFSRRS 329
C+T F R+S
Sbjct: 308 CRTNNIFIRQS 318
>gnl|CDD|215559 PLN03074, PLN03074, auxin influx permease; Provisional.
Length = 473
Score = 37.4 bits (87), Expect = 0.016
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
Query: 201 IIGSLFF-FIPIIITCILYMKITYKVRLARQNPSFKPP-VIFGWDYSLMLTNMYSYIMFI 258
+G+L F II + +M +TY+ ARQN + KPP + W T MY F+
Sbjct: 379 AVGALLVSFTVYIIPSLAHM-LTYRSASARQNAAEKPPFFLPSW------TGMYVVNAFV 431
Query: 259 VLWI 262
V+W+
Sbjct: 432 VVWV 435
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 30.9 bits (70), Expect = 1.5
Identities = 40/216 (18%), Positives = 87/216 (40%), Gaps = 32/216 (14%)
Query: 113 EIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSI 172
E C + L + ++ + +++++ Y+ + P + + + + ++IW++SI
Sbjct: 108 EFACKIVSGLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIISI 167
Query: 173 LLTT-LQFIYKVGPDYCSK--------KVSYMELYQGIIGSLF-FFIPIIITCILYMKI- 221
+ TT + F+Y D+ + K +L+ ++ IP+ I Y KI
Sbjct: 168 IETTPILFVYTTKKDHETLICCMFYNNKTMNWKLFINFEINIIGMLIPLTILLYCYSKIL 227
Query: 222 TYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQ----- 276
+ + + K L+L + I+F++ W+PF + + V S
Sbjct: 228 ITLKGINKSKKNKKA-------IKLVLIIV---ILFVIFWLPFNVSVFVYSLHILHFKSG 277
Query: 277 -ITPSFYYLAW-----LALSKSCINSVLYCISNRHF 306
+ A ++LS CIN ++Y + F
Sbjct: 278 CKAVKYIQYALHVTEIISLSHCCINPLIYAFVSEFF 313
>gnl|CDD|217039 pfam02446, Glyco_hydro_77, 4-alpha-glucanotransferase. These
enzymes EC:2.4.1.25 transfer a segment of a
(1,4)-alpha-D-glucan to a new 4-position in an acceptor,
which may be glucose or (1,4)-alpha-D-glucan.
Length = 493
Score = 30.8 bits (70), Expect = 1.9
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 7/58 (12%)
Query: 361 DASKRTSSPYRSIIHITGNT-YIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEI 417
+SSPY S N YI +EAL + + L +++ + +
Sbjct: 43 PTGPGSSSPYSSFSAFALNPLYIDLEALPEF------GLLPKATRLEDLQELSDLDRV 94
>gnl|CDD|180140 PRK05575, cbiC, precorrin-8X methylmutase; Validated.
Length = 204
Score = 29.4 bits (66), Expect = 3.0
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 12/73 (16%)
Query: 363 SKRTSSPYRSIIHITGN------TYI---AVEALADLLVSGVVIPVSAVMILAGI-KQAE 412
S+ + +IH T + YI A+EA ++L G I M L+GI K+A
Sbjct: 28 SEEELKIVKRVIHTTADFEYKDLIYIREGAIEAAKEILKKGTKIYTDTNMALSGINKKA- 86
Query: 413 PIKEIMCHVQWFL 425
+K++ VQ ++
Sbjct: 87 -LKKLNSTVQCYV 98
>gnl|CDD|114381 pfam05653, Mg_trans_NIPA, Magnesium transporter NIPA. NIPA
(nonimprinted in Prader-Willi/Angelman syndrome) is a
family of integral membrane proteins which function as
magnesium transporters.
Length = 300
Score = 29.4 bits (66), Expect = 3.9
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 6/109 (5%)
Query: 62 ISSVMIEDHLRRRGNTYIAVE-ALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQW 120
+ ++I R G T I V + L+ S V+ V A+ I IK K + + Q+
Sbjct: 155 VVLILIFFVEPRHGQTNILVYITICSLIGSLTVMSVKALGI--AIKLTFSGKNQLGYPQF 212
Query: 121 FLTLLCSLVTVWTLAMI---AMENYVRLCMPPECYTFFSKSHIILSVIM 166
++ L+ + V T A++ + + P Y FF+ S I S I+
Sbjct: 213 WIFLVVVVTCVVTQINYLNKALDIFNTSIVTPVYYVFFTTSVIAASAIL 261
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 28.4 bits (63), Expect = 9.1
Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 26/144 (18%)
Query: 202 IGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLW 261
I L FIPIII Y+KI K++ +++ K +I S+++ I ++ W
Sbjct: 277 INILGMFIPIIIFAFCYIKIILKLKQLKKSKKTKSIIIV----SIII------ICSLICW 326
Query: 262 IPFCIVM------SVASFRHQITP---SFYYLAW-------LALSKSCINSVLYCISNRH 305
IP IV+ S F I+ F L + ++L+ CIN ++Y + +
Sbjct: 327 IPLNIVILFATMYSFKGFNSIISEHICGFIKLGYAMMLAEAISLTHCCINPLIYTLIGEN 386
Query: 306 FRNAYINLFHYCCCKTTVTFSRRS 329
FR + +F +F + S
Sbjct: 387 FRMHLLMIFRNIFTNAKFSFRKSS 410
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.329 0.139 0.437
Gapped
Lambda K H
0.267 0.0736 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,185,165
Number of extensions: 2483849
Number of successful extensions: 3960
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3908
Number of HSP's successfully gapped: 162
Length of query: 492
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 391
Effective length of database: 6,457,848
Effective search space: 2525018568
Effective search space used: 2525018568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 61 (27.3 bits)