RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11022
(492 letters)
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 113 bits (283), Expect = 4e-27
Identities = 63/374 (16%), Positives = 136/374 (36%), Gaps = 47/374 (12%)
Query: 3 TPDFSSNNSLFPFTTELLTSATPMDTVDPSTLPYDWNRVARLLITTGLSVLGSVGNGYMI 62
S + P + + + T D W V ++ + + + GN +I
Sbjct: 146 NLAKSRWYNQTPNRAKRVITTFRTGTWDAYAADEVW-VVGMGIVMSLIVLAIVFGNVLVI 204
Query: 63 SSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFL 122
+++ + L+ N +I A ADL++ V+P A IL C +
Sbjct: 205 TAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKT---WTFGNFWCEFWTSI 261
Query: 123 TLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYK 182
+LC ++ TL +IA++ Y + P + + +K+ + ++M+W+VS L + L
Sbjct: 262 DVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMH 321
Query: 183 VGPDYCSKKVS----------YMELYQGIIGSLF-FFIPIIITCILYMKITYKV--RLAR 229
+ ++ + I S+ F++P++I +Y ++ ++ R +
Sbjct: 322 WYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRV-FQEAKRQLQ 380
Query: 230 QNPSFKPPVIFGWDYSLMLTNMYSYIM-----------------------FIVLWIPFCI 266
+ + + + + F + W+PF I
Sbjct: 381 KIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFI 440
Query: 267 VMSVASFRHQITPS--FYYLAWLALSKSCINSVLYCISNRHFRNAYINLFHYCCCKTTVT 324
V V + + + L W+ S N ++YC + FR A+ L C + +
Sbjct: 441 VNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELL---CLRRSSL 496
Query: 325 FSRRSRGDATRPSG 338
+ + + +G
Sbjct: 497 KAYGNGYSSNGNTG 510
Score = 53.0 bits (127), Expect = 1e-07
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 375 HITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTV 434
N +I A ADL++ V+P A IL C + +LC ++
Sbjct: 214 QTVTNYFITSLACADLVMGLAVVPFGAAHILTKT---WTFGNFWCEFWTSIDVLCVTASI 270
Query: 435 WTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTL 480
TL +IA++ Y + P + + +K+ + ++M+W+VS L + L
Sbjct: 271 ETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFL 316
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 106 bits (266), Expect = 9e-26
Identities = 59/311 (18%), Positives = 124/311 (39%), Gaps = 23/311 (7%)
Query: 29 VDPSTLPYDWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLL 88
+ L W L+ + +L GN +I+++ L+ N +I A ADL+
Sbjct: 1 MGAELLSQQW-EAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLV 59
Query: 89 VSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMP 148
V +V+P A +++ G +C + L +LC ++ TL +IA++ Y+ + P
Sbjct: 60 VGLLVVPFGATLVVRGT---WLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSP 116
Query: 149 PECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKVGPDYCSKKVSYMELYQ--------- 199
+ +++ + + +W +S L++ L + D + + +
Sbjct: 117 FRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRA 176
Query: 200 -GIIGSLF-FFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYI-- 255
I S+ F+IP++I + +++ + + + + +
Sbjct: 177 YAIASSIISFYIPLLIMIFVALRVYREAKEQIRKIDRASKRKTSRVMLMREHKALKTLGI 236
Query: 256 ---MFIVLWIPFCIVMSVASFRHQITPS--FYYLAWLALSKSCINSVLYCISNRHFRNAY 310
+F + W+PF +V V F + P F WL + S +N ++YC + FR A+
Sbjct: 237 IMGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAF 295
Query: 311 INLFHYCCCKT 321
L +
Sbjct: 296 KRLLAFPRKAD 306
Score = 49.0 bits (117), Expect = 2e-06
Identities = 25/106 (23%), Positives = 52/106 (49%), Gaps = 3/106 (2%)
Query: 375 HITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTV 434
N +I A ADL+V +V+P A +++ G +C + L +LC ++
Sbjct: 43 QTLTNLFITSLACADLVVGLLVVPFGATLVVRGT---WLWGSFLCELWTSLDVLCVTASI 99
Query: 435 WTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTL 480
TL +IA++ Y+ + P + +++ + + +W +S L++ L
Sbjct: 100 ETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFL 145
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 97.8 bits (244), Expect = 1e-22
Identities = 60/291 (20%), Positives = 111/291 (38%), Gaps = 32/291 (10%)
Query: 50 LSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAE 109
L +LG N + + LR N + A+ADL + + L G
Sbjct: 48 LIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHG---YF 104
Query: 110 PIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWL 169
C+++ F L + +W+L ++A+E YV +C P + F ++H I+ V W+
Sbjct: 105 VFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF-GENHAIMGVAFTWV 163
Query: 170 VSILLTTLQFIY-----------KVGPDYCSKKVSYM-ELYQGIIGSLFFFIPIIITCIL 217
+++ + G DY + E + + + F IP+I+
Sbjct: 164 MALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFC 223
Query: 218 YMKITYKVR-----LARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVAS 272
Y ++ + V+ + K +M+ I F++ W+P+ V
Sbjct: 224 YGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMV------IAFLICWLPYAGVAFYIF 277
Query: 273 F--RHQITPSFYYL-AWLALSKSCINSVLYCISNRHFRNAYINLFHYCCCK 320
P F + A+ A + + N V+Y + N+ FRN + CC K
Sbjct: 278 THQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTL--CCGK 326
Score = 47.4 bits (113), Expect = 5e-06
Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Query: 386 ALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENY 445
A+ADL + + L G C+++ F L + +W+L ++A+E Y
Sbjct: 81 AVADLFMVFGGFTTTLYTSLHG---YFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERY 137
Query: 446 VRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQF 482
V +C P + F ++H I+ V W++++
Sbjct: 138 VVVCKPMSNFR-FGENHAIMGVAFTWVMALACAAPPL 173
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 98.8 bits (246), Expect = 2e-22
Identities = 59/315 (18%), Positives = 110/315 (34%), Gaps = 30/315 (9%)
Query: 50 LSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAE 109
++G GNG +I L+ N +I A +D S ++ +M ++ +
Sbjct: 44 CGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFS--LVNGFPLMTISCFLKKW 101
Query: 110 PIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWL 169
C V F+ + +++ T+AMI+++ Y + P S + +I +WL
Sbjct: 102 IFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWL 161
Query: 170 VSILLTTLQFIY-----------KVGPDYCSKKVSYMELYQGIIGSLFFFIPIIITCILY 218
S+L DY S+ + + L FF PI+I Y
Sbjct: 162 WSVLWAIGPIFGWGAYTLEGVLCNCSFDYISRDSTTR-SNILCMFILGFFGPILIIFFCY 220
Query: 219 MKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYS-----------YIMFIVLWIPFCIV 267
I V + + + + + F++ W P+ +V
Sbjct: 221 FNIVMSVSNHEKEMAAMAKRLNAKELRKAQAGANAEMRLAKISIVIVSQFLLSWSPYAVV 280
Query: 268 MSVASF--RHQITPSFYYL-AWLALSKSCINSVLYCISNRHFRNAYINLFHY--CCCKTT 322
+A F +TP L A + + N ++Y +S+ FR A F + CC+
Sbjct: 281 ALLAQFGPLEWVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQFD 340
Query: 323 VTFSRRSRGDATRPS 337
+ + T
Sbjct: 341 DKETEDDKDAETEIP 355
Score = 48.0 bits (114), Expect = 5e-06
Identities = 19/97 (19%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Query: 386 ALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENY 445
A +D S ++ +M ++ + C V F+ + +++ T+AMI+++ Y
Sbjct: 77 AFSDFTFS--LVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRY 134
Query: 446 VRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQF 482
+ P S + +I +WL S+L
Sbjct: 135 NVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPI 171
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 94.4 bits (235), Expect = 3e-21
Identities = 54/343 (15%), Positives = 123/343 (35%), Gaps = 30/343 (8%)
Query: 10 NSLFPFTTELLTSATPMDTVDPSTLPYDWNRVARLLITTGLSVLGSVGNGYMISSVMIED 69
+++ P ++L + + + + W V T + V VGN ++ ++
Sbjct: 2 DNVLPVDSDLSPNISTNTSEPNQFVQPAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHK 61
Query: 70 HLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLV 129
+R N ++ A A+ ++ V+ + C F +
Sbjct: 62 RMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVH---NEWYYGLFYCKFHNFFPIAAVFA 118
Query: 130 TVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFIYKVGPDYCS 189
+++++ +A + Y+ + P + S + + + +IW++++LL Q Y S
Sbjct: 119 SIYSMTAVAFDRYMAIIHPLQPRL--SATATKVVICVIWVLALLLAFPQGYYSTTETMPS 176
Query: 190 KKV-----------SYMELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPV 238
+ V Y ++Y + L +F+P+++ Y + + A + P
Sbjct: 177 RVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVGITLW-ASEIPGDSSDR 235
Query: 239 IFGWDYSL-----MLTNMYSYIMFIVLWIPFCIVMSVASFRHQITPSFYYLA------WL 287
+ M+ + F + W+PF I + + + WL
Sbjct: 236 YHEQVSAKRKVVKMM--IVVVCTFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWL 293
Query: 288 ALSKSCINSVLYCISNRHFRNAYINLFHYCCCKTTVTFSRRSR 330
A+S + N ++YC N FR + + F C + +
Sbjct: 294 AMSSTMYNPIIYCCLNDRFRLGFKHAFRCCPFISAGDYEGLEM 336
Score = 43.1 bits (102), Expect = 1e-04
Identities = 14/100 (14%), Positives = 40/100 (40%), Gaps = 5/100 (5%)
Query: 379 NTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLA 438
N ++ A A+ ++ V+ + C F + +++++
Sbjct: 68 NYFLVNLAFAEASMAAFNTVVNFTYAVH---NEWYYGLFYCKFHNFFPIAAVFASIYSMT 124
Query: 439 MIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLT 478
+A + Y+ + P + S + + + +IW++++LL
Sbjct: 125 AVAFDRYMAIIHPLQPRL--SATATKVVICVIWVLALLLA 162
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 91.0 bits (226), Expect = 6e-20
Identities = 49/352 (13%), Positives = 113/352 (32%), Gaps = 21/352 (5%)
Query: 1 MMTPDFSSNNSLFPFTTELLTSATPMDTVDPSTLPYDWNRVARLLITTGLSVLGSVGNGY 60
+ + +L T+ +V + + + V G +GN
Sbjct: 86 LKLANEGKVKEAQAAAEQLKTTRNAYIQKYLGAFLPLGLKVTIVGLYLAVCVGGLLGNCL 145
Query: 61 MISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQW 120
++ ++ ++ N YI ALAD LV + +P IL G P +C
Sbjct: 146 VMYVILRHTKMKTATNIYIFNLALADTLVL-LTLPFQGTDILLG---FWPFGNALCKTVI 201
Query: 121 FLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFI 180
+ + +TL ++++ YV +C P + S + IW ++ ++ I
Sbjct: 202 AIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWALASVVGVPVAI 261
Query: 181 YKV----------GPDYCSKKVSYMELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQ 230
+ + + + ++ I F +P+++ + Y + ++R R
Sbjct: 262 MGSAQVEDEEIECLVEIPTPQDYWGPVFAICIFLFSFIVPVLVISVCYSLMIRRLRGVRL 321
Query: 231 NPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQITPSFYYLA----- 285
+ + ++ + +F+ W P + + Q +
Sbjct: 322 LSGSREKDRNLRRITRLVLVV--VAVFVGCWTPVQVFVLAQGLGVQPSSETAVAILRFCT 379
Query: 286 WLALSKSCINSVLYCISNRHFRNAYINLFHYCCCKTTVTFSRRSRGDATRPS 337
L SC+N +LY + +F+ + + +
Sbjct: 380 ALGYVNSCLNPILYAFLDENFKACFRKFCCASALGRPLEVLFQGPHHHHHHH 431
Score = 39.8 bits (93), Expect = 0.001
Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 4/101 (3%)
Query: 379 NTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLA 438
N YI ALAD LV + +P IL G P +C + + +TL
Sbjct: 161 NIYIFNLALADTLVL-LTLPFQGTDILLG---FWPFGNALCKTVIAIDYYNMFTSTFTLT 216
Query: 439 MIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTT 479
++++ YV +C P + S + IW ++ ++
Sbjct: 217 AMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWALASVVGV 257
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 79.8 bits (196), Expect = 4e-16
Identities = 34/222 (15%), Positives = 78/222 (35%), Gaps = 28/222 (12%)
Query: 28 TVDPSTLPYDWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADL 87
P P + + ++VL +GN + +V + +L+ N ++ A AD+
Sbjct: 9 MGQPVGAPPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADI 68
Query: 88 LVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCM 147
V + IP + I C L+ + ++++L IA++ Y+ + +
Sbjct: 69 AVGVLAIPFAIT-----ISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRI 123
Query: 148 PPECYTFFSKSHIILSVIMIWLVSILL-----------------TTLQFIYKVGPDYCSK 190
P + + + + W++S + G C
Sbjct: 124 PLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLF 183
Query: 191 KVSYMELYQGIIGSLF--FFIPIIITCILYMKITYKVRLARQ 230
+ Y + + F +P+++ +Y++I AR+
Sbjct: 184 EDVVPMNYM-VYFNFFACVLVPLLLMLGVYLRI---FLAARR 221
Score = 50.5 bits (120), Expect = 7e-07
Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 4/79 (5%)
Query: 257 FIVLWIPFCIVMSVASFRHQITPS----FYYLAWLALSKSCINSVLYCISNRHFRNAYIN 312
F + W+P I+ F + + Y L+ + S +N +Y R FR +
Sbjct: 404 FALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRK 463
Query: 313 LFHYCCCKTTVTFSRRSRG 331
+ + F
Sbjct: 464 IIRSHVLRQQEPFKAHHHH 482
Score = 49.4 bits (117), Expect = 2e-06
Identities = 17/103 (16%), Positives = 40/103 (38%), Gaps = 5/103 (4%)
Query: 375 HITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTV 434
N ++ A AD+ V + IP + I C L+ + ++
Sbjct: 53 QNVTNYFVVSLAAADIAVGVLAIPFAIT-----ISTGFCAACHGCLFIACFVLVLTQSSI 107
Query: 435 WTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILL 477
++L IA++ Y+ + +P + + + + W++S +
Sbjct: 108 FSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAI 150
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 76.3 bits (187), Expect = 5e-15
Identities = 59/378 (15%), Positives = 123/378 (32%), Gaps = 18/378 (4%)
Query: 5 DFSSNNSLFPFTTELLTSAT--PMDTVDPSTLPYDWNRVARLLITTGLSVLGSVGNGYMI 62
D+ ++ P + L+S + + L L + GNG +
Sbjct: 1 DYKDDDDGAPASLSQLSSHLNYTCGAENSTGASQARPHAYYALSYCALILAIVFGNGLVC 60
Query: 63 SSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFL 122
+V+ E L+ N + A+ADLLV+ +V+P + + G I C V L
Sbjct: 61 MAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVW--NFSRICCDVFVTL 118
Query: 123 TLLCSLVTVWTLAMIAMENYVRLCMP---PECYTFFSKSHIILSVIMIWLVSILLTTLQF 179
++ ++W L I+++ Y + MP S + L + +W+++ ++
Sbjct: 119 DVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLL 178
Query: 180 IYKVGPDYCSKKVSYMELYQGIIGSLF-FFIPIIITCILYMKITYKV--RLARQNPSFKP 236
+ + I S+ F++P +T ++Y +I Y V + R+N
Sbjct: 179 FGFNTTGDPTVCSISNPDFV-IYSSVVSFYLPFGVTVLVYARI-YVVLKQRRRKNIFEML 236
Query: 237 PVIFGWDYSLMLT--NMYSYIMFIVLWIPFCIVMSVASFRHQITPSFYYLAWLALSKSCI 294
+ G + Y+ + +L + + + I + + ++
Sbjct: 237 RIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLF 296
Query: 295 NSVLYCISNRHFRNAYINLFHYCCCKTTVTFSRRSRGDATRPSGDVRVHIIPGYNMYSYT 354
N + RNA + R + + G+ V
Sbjct: 297 NQDVDAAVRGILRNAK----LKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQ 352
Query: 355 SPQRGRDASKRTSSPYRS 372
+ S Y
Sbjct: 353 KRWDEAAVNLAKSRWYNQ 370
Score = 50.1 bits (119), Expect = 8e-07
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 257 FIVLWIPFCIVMSVASFRHQITPS---FYYLAWLALSKSCINSVLYCISNRHFRNAYINL 313
FIV W+PF + + + S + WL S +N V+Y N FR A++ +
Sbjct: 410 FIVCWLPFFLTHVLNTHCQTCHVSPELYSATTWLGYVNSALNPVIYTTFNIEFRKAFLKI 469
Query: 314 FHYCCCKTTVTF 325
C V F
Sbjct: 470 LS-CGRPLEVLF 480
Score = 47.1 bits (111), Expect = 9e-06
Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 5/107 (4%)
Query: 375 HITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTV 434
T N + A+ADLLV+ +V+P + + G I C V L ++ ++
Sbjct: 70 QTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVW--NFSRICCDVFVTLDVMMCTASI 127
Query: 435 WTLAMIAMENYVRLCMP---PECYTFFSKSHIILSVIMIWLVSILLT 478
W L I+++ Y + MP S + L + +W+++ ++
Sbjct: 128 WNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVS 174
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 75.9 bits (186), Expect = 7e-15
Identities = 43/231 (18%), Positives = 92/231 (39%), Gaps = 20/231 (8%)
Query: 5 DFSSNNSLFPFTTELLTSATPMDTVDPSTLPYDWNRVARLLITTGLSVLGSVGNGYMISS 64
D + L + + D + + V ++ + + + GN +I++
Sbjct: 5 DDAMGQPGNGSAFLLAPNRSHAPDHDVTQQRDEVWVVGMGIVMSLIVLAIVFGNVLVITA 64
Query: 65 VMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTL 124
+ + L+ N +I A ADL++ V+P A IL + C + ++
Sbjct: 65 IAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMW---TFGNFWCEF--WTSI 119
Query: 125 --LCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILL-------- 174
LC ++ TL +IA++ Y + P + + +K+ + ++M+W+VS L
Sbjct: 120 DVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMH 179
Query: 175 ---TTLQFIYKVGPDYCSKKVSYMELYQGIIGSLF-FFIPIIITCILYMKI 221
T Q + + Y I S+ F++P++I +Y ++
Sbjct: 180 WYRATHQEAINCYAEETCCDFFTNQAYA-IASSIVSFYVPLVIMVFVYSRV 229
Score = 48.5 bits (115), Expect = 3e-06
Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 3/84 (3%)
Query: 256 MFIVLWIPFCIVMSVASFRHQITPS--FYYLAWLALSKSCINSVLYCISNRHFRNAYINL 313
F + W+PF IV V + + + L W+ S N ++YC + FR A+ L
Sbjct: 416 TFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQEL 474
Query: 314 FHYCCCKTTVTFSRRSRGDATRPS 337
+ S T
Sbjct: 475 LCLRRSSLKAYGNGYSSNGNTGEQ 498
Score = 45.5 bits (107), Expect = 3e-05
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 375 HITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTL--LCSLV 432
N +I A ADL++ V+P A IL + C + ++ LC
Sbjct: 72 QTVTNYFITSLACADLVMGLAVVPFGAAHILMKMW---TFGNFWCEF--WTSIDVLCVTA 126
Query: 433 TVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLT 478
++ TL +IA++ Y + P + + +K+ + ++M+W+VS L +
Sbjct: 127 SIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTS 172
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 75.1 bits (184), Expect = 1e-14
Identities = 37/216 (17%), Positives = 90/216 (41%), Gaps = 15/216 (6%)
Query: 21 TSATPMDTVDPSTLPYDWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIA 80
++ + +++ ++ + V +L+ LS++ +GN ++ S+ + HL+ N ++
Sbjct: 4 STDSSDNSLALTSPYKTFEVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLF 63
Query: 81 VEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTL--LCSLVTVWTLAMIA 138
A ADL++ + + + + G P+ ++C + +L L + S +V L +I+
Sbjct: 64 SLACADLIIGVFSMNLYTLYTVIGYW---PLGPVVCDL--WLALDYVVSNASVMNLLIIS 118
Query: 139 MENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLT--------TLQFIYKVGPDYCSK 190
+ Y + P + + + W++S +L + + V C
Sbjct: 119 FDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILWAPAILFWQFIVGVRTVEDGECYI 178
Query: 191 KVSYMELYQGIIGSLFFFIPIIITCILYMKITYKVR 226
+ F++P+II +LY I+ +
Sbjct: 179 QFFSNAAVTFGTAIAAFYLPVIIMTVLYWHISRASK 214
Score = 49.3 bits (117), Expect = 2e-06
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 257 FIVLWIPFCIVMSVASFRHQITPS--FYYLAWLALSKSCINSVLYCISNRHFRNAYINLF 314
FI+ W P+ +++ + +F P+ + WL S IN Y + N F+ + +L
Sbjct: 397 FIITWAPYNVMVLINTFCAPCIPNTVWTIGYWLCYINSTINPACYALCNATFKKTFKHLL 456
Query: 315 HYCCCK 320
C K
Sbjct: 457 M-CHYK 461
Score = 45.5 bits (107), Expect = 3e-05
Identities = 19/106 (17%), Positives = 45/106 (42%), Gaps = 7/106 (6%)
Query: 374 IHITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTL--LCSL 431
+ N ++ A ADL++ + + + + G P+ ++C + +L L + S
Sbjct: 54 LQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYW---PLGPVVCDL--WLALDYVVSN 108
Query: 432 VTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILL 477
+V L +I+ + Y + P + + + W++S +L
Sbjct: 109 ASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFIL 154
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 73.9 bits (181), Expect = 2e-14
Identities = 31/215 (14%), Positives = 74/215 (34%), Gaps = 23/215 (10%)
Query: 30 DPSTLPYDWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLV 89
D P + + ++VL +GN + +V + +L+ N ++ A AD+ V
Sbjct: 21 DDDGAPPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAV 80
Query: 90 SGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPP 149
+ IP + + C L+ + ++++L IA++ Y+ + +P
Sbjct: 81 GVLAIPFAITISTG-----FCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPL 135
Query: 150 ECYTFFSKSHIILSVIMIWLVSILLTTLQFIY-----------------KVGPDYCSKKV 192
+ + + + W++S + + G C +
Sbjct: 136 RYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFED 195
Query: 193 SYMELYQGIIGSLF-FFIPIIITCILYMKITYKVR 226
Y +P+++ +Y++I R
Sbjct: 196 VVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAAR 230
Score = 52.4 bits (125), Expect = 2e-07
Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 4/79 (5%)
Query: 257 FIVLWIPFCIVMSVASFRHQITPS----FYYLAWLALSKSCINSVLYCISNRHFRNAYIN 312
F + W+P I+ F + + Y L+ + S +N +Y R FR +
Sbjct: 363 FALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRK 422
Query: 313 LFHYCCCKTTVTFSRRSRG 331
+ + F
Sbjct: 423 IIRSHVLRQQEPFKAHHHH 441
Score = 46.2 bits (109), Expect = 2e-05
Identities = 16/103 (15%), Positives = 40/103 (38%), Gaps = 5/103 (4%)
Query: 375 HITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTV 434
N ++ A AD+ V + IP + + C L+ + ++
Sbjct: 63 QNVTNYFVVSLAAADIAVGVLAIPFAITISTG-----FCAACHGCLFIACFVLVLTQSSI 117
Query: 435 WTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILL 477
++L IA++ Y+ + +P + + + + W++S +
Sbjct: 118 FSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAI 160
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 72.4 bits (177), Expect = 8e-14
Identities = 32/195 (16%), Positives = 86/195 (44%), Gaps = 17/195 (8%)
Query: 38 WNRVARLLITTGLSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVS 97
+ +++ + + ++ N ++ +V E L GN YI ++ADL+V VV+P++
Sbjct: 6 PQLMPLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMN 65
Query: 98 AVMILAGIKQAEPIKEIMCHVQWFLTL--LCSLVTVWTLAMIAMENYVRLCMPPECYTFF 155
+ +L + +C +L++ + S +++++ ++ ++ Y + P +
Sbjct: 66 ILYLLMSKW---SLGRPLCLF--WLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYR 120
Query: 156 SKSHIILSVIMIWLVSILLTTLQFIYK--------VGPDYCSKKVSYMELYQGIIGSLF- 206
+K+ +++ W +S L + D C + ++ ++ ++
Sbjct: 121 TKTRASATILGAWFLSFLWVIPILGWNHFMQQTSVRREDKCETDFYDVTWFK-VMTAIIN 179
Query: 207 FFIPIIITCILYMKI 221
F++P ++ Y KI
Sbjct: 180 FYLPTLLMLWFYAKI 194
Score = 49.3 bits (117), Expect = 2e-06
Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 3/81 (3%)
Query: 247 MLTNMYSYIMFIVLWIPFCIVMSVASFRHQITPS--FYYLAWLALSKSCINSVLYCISNR 304
+ FI+ WIP+ I V +F + WL S +N ++Y + N
Sbjct: 372 AKQLGFIMAAFILCWIPYFIFFMVIAFCKNCCNEHLHMFTIWLGYINSTLNPLIYPLCNE 431
Query: 305 HFRNAYINLFHYCCCKTTVTF 325
+F+ + + H + F
Sbjct: 432 NFKKTFKRILH-IRSGENLYF 451
Score = 43.9 bits (103), Expect = 9e-05
Identities = 22/106 (20%), Positives = 54/106 (50%), Gaps = 7/106 (6%)
Query: 374 IHITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTL--LCSL 431
+H GN YI ++ADL+V VV+P++ + +L + +C +L++ + S
Sbjct: 39 LHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKW---SLGRPLCLF--WLSMDYVAST 93
Query: 432 VTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILL 477
+++++ ++ ++ Y + P + +K+ +++ W +S L
Sbjct: 94 ASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLSFLW 139
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 67.2 bits (163), Expect = 4e-12
Identities = 31/224 (13%), Positives = 81/224 (36%), Gaps = 9/224 (4%)
Query: 6 FSSNNSLFPFTTELLTSATPMDTVDPSTLPYDWNRVARLLITTGLSVLGSVGNGYMISSV 65
S+ S + ++ ++ S + ++ ++ + + N +++ ++
Sbjct: 30 HRSSVSDYVNYDIIVRHYNYTGKLNISADKENSIKLTSVVFIL-ICCFIILENIFVLLTI 88
Query: 66 MIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLL 125
R +I AL+DLL + + ++ +
Sbjct: 89 WKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLSGATTY----KLTPAQWFLREGSMFV 144
Query: 126 CSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQFI---YK 182
+V++L IA+E Y+ + + + + + + L + W++S++L L +
Sbjct: 145 ALSASVFSLLAIAIERYITM-LKMKLHNGSNNFRLFLLISACWVISLILGGLPIMGWNCI 203
Query: 183 VGPDYCSKKVSYMELYQGIIGSLFFFIPIIITCILYMKITYKVR 226
CS + + + + F + ++ ILY +I VR
Sbjct: 204 SALSSCSTVLPLYHKHYILFCTTVFTLLLLSIVILYCRIYSLVR 247
Score = 49.9 bits (118), Expect = 1e-06
Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 242 WDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQITPSFYYLA----WLALSKSCINSV 297
+ +L+ T + +FI W P I++ + T + A LA+ S N +
Sbjct: 415 ENVALLKTVIIVLSVFIACWAPLFILLLLDVGCKVKTCDILFRAEYFLVLAVLNSGTNPI 474
Query: 298 LYCISNRHFRNAYINLFHYCCCK 320
+Y ++N+ R A+I +
Sbjct: 475 IYTLTNKEMRRAFIRIMGRPLEV 497
Score = 42.9 bits (100), Expect = 2e-04
Identities = 18/106 (16%), Positives = 41/106 (38%), Gaps = 5/106 (4%)
Query: 375 HITGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTV 434
H +I AL+DLL + + ++ + +V
Sbjct: 95 HRPMYYFIGNLALSDLLAGVAYTANLLLSGATTY----KLTPAQWFLREGSMFVALSASV 150
Query: 435 WTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTL 480
++L IA+E Y+ + + + + + + L + W++S++L L
Sbjct: 151 FSLLAIAIERYITM-LKMKLHNGSNNFRLFLLISACWVISLILGGL 195
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 64.9 bits (158), Expect = 2e-11
Identities = 51/323 (15%), Positives = 103/323 (31%), Gaps = 31/323 (9%)
Query: 5 DFSSNNSLFPFTTELLTSATPMDTVDPSTLP---YDWNRVARLLITTGLS---VLGSVGN 58
D + + +T++ T D P + ++ + T S + G VGN
Sbjct: 7 DAGAPEGISIYTSDNYTEEMGSGDYDSMKEPCFREENANFNKIFLPTIYSIIFLTGIVGN 66
Query: 59 GYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHV 118
G +I + + LR + Y ++ADLL + +P AV +A +C
Sbjct: 67 GLVILVMGYQKKLRSMTDKYRLHLSVADLLFV-ITLPFWAVDAVAN----WYFGNFLCKA 121
Query: 119 QWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQ 178
+ + +VW LA I+++ Y+ + + + +W+ ++LLT
Sbjct: 122 VHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPD 181
Query: 179 FIY-----KVGPDYCSKK------VSYMELYQGIIGSLFFFIPIIITCILYMKITYKVRL 227
FI+ C + V + ++G +P I+ Y I K+
Sbjct: 182 FIFANVSEADDRYICDRFYPNDLWVVVFQFQHIMVG---LILPGIVILSCYCIIISKLSH 238
Query: 228 ARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVL------WIPFCIVMSVASFRHQITPSF 281
+ N + G + Y + I + +
Sbjct: 239 SGSNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVI 298
Query: 282 YYLAWLALSKSCINSVLYCISNR 304
L +++ + I
Sbjct: 299 TKDEAEKLFNQDVDAAVRGILRN 321
Score = 39.9 bits (93), Expect = 0.002
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 12/77 (15%)
Query: 255 IMFIVLWIPFCIVMSVASF------------RHQITPSFYYLAWLALSKSCINSVLYCIS 302
+ F W+P+ I +S+ SF + + LA C+N +LY
Sbjct: 420 LAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFL 479
Query: 303 NRHFRNAYINLFHYCCC 319
F+ + +
Sbjct: 480 GAKFKTSAQHALTSGRP 496
Score = 36.4 bits (84), Expect = 0.022
Identities = 20/100 (20%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Query: 379 NTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLA 438
+ Y ++ADLL + +P AV +A +C + + +VW LA
Sbjct: 84 DKYRLHLSVADLLFV-ITLPFWAVDAVAN----WYFGNFLCKAVHVIYTVNLYSSVWILA 138
Query: 439 MIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLT 478
I+++ Y+ + + + +W+ ++LLT
Sbjct: 139 FISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLT 178
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 54.2 bits (130), Expect = 5e-08
Identities = 33/234 (14%), Positives = 78/234 (33%), Gaps = 26/234 (11%)
Query: 52 VLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPI 111
V+G GN ++ ++ ++ N YI ALAD L + +P +V L G P
Sbjct: 29 VVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALAT-STLPFQSVNYLMG---TWPF 84
Query: 112 KEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVS 171
I+C + + +++TL ++++ Y+ +C P + F + + + + W++S
Sbjct: 85 GNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILS 144
Query: 172 ILLTTLQFIYKV----------GPDYCSKKVSYMELYQGIIGSLFFFIPIIITCILYMKI 221
+ + + L + + F +P++I + Y +
Sbjct: 145 SAIGLPVMFMATTKYRQGSIDCTLTFSHPTWYWENLLKICVFIFAFIMPVLIITVCYGLM 204
Query: 222 TYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRH 275
+++ R + + +
Sbjct: 205 ILRLKSVRNIFEMLRIDEGLR------------LKIYKNTEGYYTIGIGHLLTK 246
Score = 43.1 bits (101), Expect = 2e-04
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 255 IMFIVLWIPFCIVMSVASFRHQITPSFYYLAW-----LALSKSCINSVLYCISNRHFRNA 309
+FIV W P I + + + +F ++W L + SC+N VLY + +F+
Sbjct: 390 AVFIVCWTPIHIYVIIKALITIPETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRC 449
Query: 310 YINLFHYCCCKT 321
+C +
Sbjct: 450 ---FREFCIPTS 458
Score = 35.0 bits (80), Expect = 0.056
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 379 NTYIAVEALADLLVSGVVIPVSAVMILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLA 438
N YI ALAD L + +P +V L G P I+C + + +++TL
Sbjct: 53 NIYIFNLALADALAT-STLPFQSVNYLMG---TWPFGNILCKIVISIDYYNMFTSIFTLC 108
Query: 439 MIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLT 478
++++ Y+ +C P + F + + + + W++S +
Sbjct: 109 TMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIG 148
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.9 bits (126), Expect = 2e-07
Identities = 58/415 (13%), Positives = 120/415 (28%), Gaps = 115/415 (27%)
Query: 14 PFTTELLTSATPMDTV-DPSTL-PYDWNRVARLLITTGLSVLGSVGNGYMISSVMIEDHL 71
P+ LL + V + ++ + ++L+TT + + + + ++ H
Sbjct: 242 PYENCLLV----LLNVQNAKAWNAFNLS--CKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 72 RRRGNTYIAVEALADLLVSGVVI-----PVSAVMI----LAGIKQAEPIKEIMCHVQWFL 122
T E LL+ + P + L+ I AE I++ + +
Sbjct: 296 M----TLTPDEVK-SLLLKYLDCRPQDLPREVLTTNPRRLSII--AESIRDGLATWDNWK 348
Query: 123 TLLCSLVTVWTLAMIAMENYVRLCMPPE---CY---TFFSKS-HIILSVIMI-WLVSILL 174
+ C L I +E+ + + P E + + F S HI ++ + W I
Sbjct: 349 HVNC-----DKLTTI-IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402
Query: 175 TTLQFIYK------VGPDYCSKKVSYMELYQGIIGSLFFFIPIIITCILYMKI--TYKVR 226
+ + K V +S +Y L + + L+ I Y +
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIY------LELKVKLENEYALHRSIVDHYNIP 456
Query: 227 LARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQITPSFYYLAW 286
+ PP + Y YS+I ++L
Sbjct: 457 KTFDSDDLIPPYLDQ--YF------YSHIG-------------------------HHLKN 483
Query: 287 LALSKSCINSVLYCISNRHFRNAYINLFHYCCCK-TTVTFSRRSRGDATRPSGDVRV--- 342
+ + FR +++ F + K + + + G ++
Sbjct: 484 IEHPE----------RMTLFRMVFLD-FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532
Query: 343 HIIPGYNMYSYTSPQRGRD--------ASKRTSSPYRSIIHI---TGNTYIAVEA 386
+I Y + S Y ++ I + I EA
Sbjct: 533 YICDNDPKYE----RLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.019
Identities = 53/376 (14%), Positives = 106/376 (28%), Gaps = 134/376 (35%)
Query: 148 PPECYTFFSKSHIILSVIMIWL----------------VSI-LLTTLQFI-YKVGPDYCS 189
+ F++ IL WL +S L+ +Q Y V
Sbjct: 202 TLDAEKVFTQGLNILE----WLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVV---TAK 254
Query: 190 K-KVSYMELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLML 248
+ EL + G+ ++ + SF
Sbjct: 255 LLGFTPGELRSYLKGATGHSQGLVTAVA--------IAETDSWESF-------------F 293
Query: 249 TNMYSYI--MFIVLWI--------PFCIV---MSVASFRHQI-TPSFYYLAWLALSKSCI 294
++ I +F +I P + + S + PS L+ L++ +
Sbjct: 294 VSVRKAITVLF---FIGVRCYEAYPNTSLPPSILEDSLENNEGVPS-PMLSISNLTQEQV 349
Query: 295 NSVLYCISNRHF---RNAYINLF----HYCCC---KTTVTFSRRSRGDATRPSGDVRVHI 344
+ +N H + I+L + ++ + R A PSG +
Sbjct: 350 QDYVN-KTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK-AKAPSGLDQ-SR 406
Query: 345 IPGYNMYSYTSPQRGRDASKR---TSSPYRSIIHITGNTYI--AVEAL-ADLLVSGVVIP 398
IP +S +R S R +SP+ H + + A + + DL+ + V
Sbjct: 407 IP----FS----ERKLKFSNRFLPVASPF----H---SHLLVPASDLINKDLVKNNVSFN 451
Query: 399 VSAVMILAGIKQAEPIKEI-----MCHVQWFLTL-LCSLVTV----WTLAMIAMENYVRL 448
+ I P+ + + + ++ + + W
Sbjct: 452 AKDIQI--------PVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETT---------- 493
Query: 449 CMPPECYTFFSKSHII 464
T F +HI+
Sbjct: 494 -------TQFKATHIL 502
Score = 33.9 bits (77), Expect = 0.16
Identities = 30/252 (11%), Positives = 69/252 (27%), Gaps = 99/252 (39%)
Query: 218 YMKITYKVRL---ARQNPSFK------PPVIFGWDYS-LMLTNMYSY----IMFIVLWIP 263
Y + ++ + + FK F + L T + +
Sbjct: 1688 YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT---QFTQPALT------- 1737
Query: 264 FCIVMSVASFR----HQITPSFYYLA------WLALSKSCINSVLYCISNRHFRNAYINL 313
+M A+F + P+ A + AL+ + V+ + + +
Sbjct: 1738 ---LMEKAAFEDLKSKGLIPADATFAGHSLGEYAALA--SLADVM------SIESL-VEV 1785
Query: 314 FHYCCCKTTVTFSRRSRGDATRPSGDVRVHIIPGYNMYSYTSPQR-----GRDA------ 362
Y RG + + Y M + +P R ++A
Sbjct: 1786 VFY-------------RGMTMQVAVPRDELGRSNYGMIA-INPGRVAASFSQEALQYVVE 1831
Query: 363 --SKRTS---------SPYRSIIHITGNTYIAVEALADLL-------VSGVVIPVSAVMI 404
KRT + + G+ A++ + ++L + + + S +
Sbjct: 1832 RVGKRTGWLVEIVNYNVENQQYV-AAGDL-RALDTVTNVLNFIKLQKIDIIELQKSLSL- 1888
Query: 405 LAGIKQAEPIKE 416
E ++
Sbjct: 1889 -------EEVEG 1893
Score = 32.7 bits (74), Expect = 0.38
Identities = 19/95 (20%), Positives = 30/95 (31%), Gaps = 25/95 (26%)
Query: 4 PDFSSNNSLF-----PFTTELLTSATPMDTVDPSTLPYDWNRVARLLITTGLSVLGSVGN 58
FS+ F PF + LL A+ + D +N + I V +
Sbjct: 414 LKFSNR---FLPVASPFHSHLLVPASDLINKDLVKNNVSFN-AKDIQIP----VY-DTFD 464
Query: 59 GYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVV 93
G D LR + E + D ++ V
Sbjct: 465 G--------SD-LRVLSGS--ISERIVDCIIRLPV 488
Score = 32.7 bits (74), Expect = 0.38
Identities = 41/263 (15%), Positives = 68/263 (25%), Gaps = 103/263 (39%)
Query: 101 ILAGIKQAEPIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHI 160
L G +I H L L+ ++ + ++ Y + +
Sbjct: 95 YLEG-------NDI--H-----ALAAKLLQENDTTLVKTKELIK------NY--ITARIM 132
Query: 161 ILSVIMIWLVSILLTTLQ----FIYKV----GP--DYCSKKVSYMEL------YQGIIGS 204
S L + + + G DY + EL Y ++G
Sbjct: 133 AKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY------FEELRDLYQTYHVLVGD 186
Query: 205 LFFFIPIIITCILYMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWI-- 262
L F L L R + +++ + I+ W+
Sbjct: 187 LIKFS----AETLS-------ELIRTTLDAEK--------------VFTQGLNILEWLEN 221
Query: 263 PFCIVMSVASFRHQITPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFHYCC-CK- 320
P TP YL + + SC L + I L HY K
Sbjct: 222 P------------SNTPDKDYLLSIPI--SC---PLIGV---------IQLAHYVVTAKL 255
Query: 321 ---TTVTFSRRSRGDATRPSGDV 340
T +G AT S +
Sbjct: 256 LGFTPGELRSYLKG-ATGHSQGL 277
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium
meliloti} PDB: 3ju2_A
Length = 275
Score = 29.0 bits (65), Expect = 3.6
Identities = 15/110 (13%), Positives = 32/110 (29%), Gaps = 13/110 (11%)
Query: 1 MMTPDFSSNNSLF----PFTTEL-LTSATPMDTV---DPSTLPYDWNRVARLLITTGLSV 52
M S N + F + + + + R++ GL +
Sbjct: 2 MQVEGLSINLATIREQCGFAEAVDICLKHGITAIAPWRDQVAAIGLGEAGRIVRANGLKL 61
Query: 53 LGSVGNGYMISSVMIEDHLRRRGNTYI--AVEALADLLVSGVVIPVSAVM 100
G G+ + + R + AV+ A+L +V+ +
Sbjct: 62 TGLCRGGFFPAP---DASGREKAIDDNRRAVDEAAELGADCLVLVAGGLP 108
>1gxs_A P-(S)-hydroxymandelonitrIle lyase chain A; inhibitor complex,
cyanogenesis mechanism; HET: NAG FUL DKA; 2.3A {Sorghum
bicolor} SCOP: c.69.1.5
Length = 270
Score = 28.9 bits (65), Expect = 3.8
Identities = 17/95 (17%), Positives = 27/95 (28%), Gaps = 26/95 (27%)
Query: 35 PYDWNRVARLL-----ITTGLSVLGSVGNGYMISSVMI------------EDHLRRRGNT 77
Y WN+ A +L G S + + + + E
Sbjct: 93 EYAWNKAANILFAESPAGVGFS-YSNTSSDLSMGDDKMAQDTYTFLVKWFERFPHYNYRE 151
Query: 78 -YIAVEALADLLVSGVVIPVSAVMILAGIKQAEPI 111
YIA E SG IP + ++ + I
Sbjct: 152 FYIAGE-------SGHFIPQLSQVVYRNRNNSPFI 179
>2zai_A Oligosaccharyl transferase STT3 subunit related P; multi-domain
proteins (alpha and beta); 2.70A {Pyrococcus furiosus}
PDB: 2zag_A
Length = 497
Score = 28.6 bits (63), Expect = 5.8
Identities = 10/69 (14%), Positives = 21/69 (30%), Gaps = 5/69 (7%)
Query: 178 QFIYKVGPDYCSKKVSYMELYQGIIGSLFFFIPIIITCILYMKITYKVRLARQNPS---- 233
F Y + ++Y ++ L F +P K+ ++ +
Sbjct: 193 AFPYVLHLTPTIGVLAYYKVATANFIKLAFGVPASTIPGFSDKLFSNFEPVYESGNVIVY 252
Query: 234 -FKPPVIFG 241
F P I+
Sbjct: 253 RFTPFGIYK 261
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.139 0.437
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,582,157
Number of extensions: 456409
Number of successful extensions: 1074
Number of sequences better than 10.0: 1
Number of HSP's gapped: 991
Number of HSP's successfully gapped: 64
Length of query: 492
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 395
Effective length of database: 3,993,456
Effective search space: 1577415120
Effective search space used: 1577415120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 59 (26.9 bits)