RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11022
(492 letters)
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Length = 348
Score = 67.3 bits (163), Expect = 9e-13
Identities = 49/292 (16%), Positives = 95/292 (32%), Gaps = 14/292 (4%)
Query: 50 LSVLGSVGNGYMISSVMIEDHLRRRGNTYIAVEALADLLVSGVVIPVSAVMILAGIKQAE 109
L +LG N + + LR N + A+ADL + + L G
Sbjct: 47 LIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFG 106
Query: 110 PIKEIMCHVQWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWL 169
P + L +L ++ LA+ + + + + +M
Sbjct: 107 PTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALA 166
Query: 170 VSILLTTLQFIYKVGPDYCSKKVSYM--------ELYQGIIGSLFFFIPIIITCILYMKI 221
+ Y CS + Y E + + + F IP+I+ Y ++
Sbjct: 167 CAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL 226
Query: 222 TYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQITPSF 281
+ V+ A + + + + I F++ W+P+ V
Sbjct: 227 VFTVKEAAAQQ-QESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGP 285
Query: 282 YYL---AWLALSKSCINSVLYCISNRHFRNAYINLFHYCCCKTTVTFSRRSR 330
++ A+ A + + N V+Y + N+ FRN + CC K + S
Sbjct: 286 IFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTL--CCGKNPLGDDEAST 335
>d1jiha2 e.8.1.7 (A:1-389) DNA polymerase eta {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 389
Score = 32.6 bits (73), Expect = 0.11
Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 10/68 (14%)
Query: 360 RDASKRTSSPYRSIIHITGNT-YIAVEALAD-------LLV--SGVVIPVSAVMILAGIK 409
SK S I HI N + VE + ++ +I VS GI
Sbjct: 13 GSPSKAYESSLACIAHIDMNAFFAQVEQMRCGLSKEDPVVCVQWNSIIAVSYAARKYGIS 72
Query: 410 QAEPIKEI 417
+ + I+E
Sbjct: 73 RMDTIQEA 80
>d2o3ia1 e.73.1.1 (A:2-390) Hypothetical protein CV3147
{Chromobacterium violaceum [TaxId: 536]}
Length = 389
Score = 29.5 bits (66), Expect = 0.96
Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 9/85 (10%)
Query: 46 ITTGLSVLGSVGNGYMISSVMIEDHLRRRGN------TYIAVEALAD---LLVSGVVIPV 96
+ G GS G G MIS+ + + R+ + V+ D ++V+ + P
Sbjct: 12 LLQGACFFGSGGGGTMISARHLAANFRKGDYYPTDKVRVVDVDEATDGDCVMVAYMGAPD 71
Query: 97 SAVMILAGIKQAEPIKEIMCHVQWF 121
+ + E ++
Sbjct: 72 AINQVQWPNGPVEAALAARQRLESQ 96
>d1d2ea2 b.44.1.1 (A:349-451) Elongation factor Tu (EF-Tu) {Cow (Bos
taurus), mitochondrial [TaxId: 9913]}
Length = 103
Score = 27.6 bits (61), Expect = 1.3
Identities = 5/50 (10%), Positives = 16/50 (32%)
Query: 303 NRHFRNAYINLFHYCCCKTTVTFSRRSRGDATRPSGDVRVHIIPGYNMYS 352
++ F + ++ + + P D+++ +I M
Sbjct: 19 HKPFVSHFMPVMFSLTWDMACRIILPPGKELAMPGEDLKLTLILRQPMIL 68
>d1t94a2 e.8.1.7 (A:75-407) DNA polymerase kappa {Human (Homo
sapiens) [TaxId: 9606]}
Length = 333
Score = 27.5 bits (60), Expect = 3.4
Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 13/94 (13%)
Query: 371 RSIIHITGNT-YIAVEALAD---------LLVSGVVIPVSAVMILAGIKQAEPIKEI--M 418
+I+HI + Y AVE + + ++ + G++ A P +
Sbjct: 27 NTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHARRFGVRAAMPGFIAKRL 86
Query: 419 CHVQWFLTLLCSLVT-VWTLAMIAMENYVRLCMP 451
C + V + +Y M
Sbjct: 87 CPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMA 120
>d1zeta2 e.8.1.7 (A:27-299) DNA polymerase iota {Human (Homo
sapiens) [TaxId: 9606]}
Length = 273
Score = 27.1 bits (59), Expect = 5.3
Identities = 13/91 (14%), Positives = 31/91 (34%), Gaps = 10/91 (10%)
Query: 371 RSIIHITGNT-YIAVE-----ALADLLV----SGVVIPVSAVMILAGIKQAEPIKEIMCH 420
R I+H+ + Y VE L D + +V+ + G+K+ +++
Sbjct: 2 RVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYLVVTCNYEARKLGVKKLMNVRDAKEK 61
Query: 421 VQWFLTLLCSLVTVWTLAMIAMENYVRLCMP 451
+ + +T + + + P
Sbjct: 62 CPQLVLVNGEDLTRYREMSYKVTELLEEFSP 92
>d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId:
1421]}
Length = 309
Score = 26.8 bits (57), Expect = 6.4
Identities = 16/138 (11%), Positives = 31/138 (22%)
Query: 218 YMKITYKVRLARQNPSFKPPVIFGWDYSLMLTNMYSYIMFIVLWIPFCIVMSVASFRHQI 277
I +R A + N + +++ A+
Sbjct: 113 SDDIAAAIRHAADQATATGTKTIISMSLGSSANNSLISSAVNYAYSKGVLIVAAAGNSGY 172
Query: 278 TPSFYYLAWLALSKSCINSVLYCISNRHFRNAYINLFHYCCCKTTVTFSRRSRGDATRPS 337
+ + + ++ N +R A + Y + S
Sbjct: 173 SQGTIGYPGALPNAIAVAALENVQQNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGS 232
Query: 338 GDVRVHIIPGYNMYSYTS 355
GYN S TS
Sbjct: 233 SVYSTWYNGGYNTISGTS 250
>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma
chain {Escherichia coli [TaxId: 562]}
Length = 225
Score = 26.0 bits (57), Expect = 9.1
Identities = 19/107 (17%), Positives = 31/107 (28%), Gaps = 7/107 (6%)
Query: 119 QWFLTLLCSLVTVWTLAMIAMENYVRLCMPPECYTFFSKSHIILSVIMIWLVSILLTTLQ 178
Q V L + RL P T +ILS+++I LLT
Sbjct: 87 QKMAMFAGGASGVLCLIGGVLLLKRRLFSPRVRATTTGADILILSLLVIQCALGLLTIPF 146
Query: 179 FIYKVGPDYCSKKVSYMELYQGIIGSLFFFIPIIITCILYMKITYKV 225
+ S M G S+ F + + +++
Sbjct: 147 SAQHMDG-------SEMMKLVGWAQSVVTFHGGASQHLDGVAFIFRL 186
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.329 0.139 0.437
Gapped
Lambda K H
0.267 0.0593 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,878,954
Number of extensions: 88376
Number of successful extensions: 260
Number of sequences better than 10.0: 1
Number of HSP's gapped: 256
Number of HSP's successfully gapped: 27
Length of query: 492
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 403
Effective length of database: 1,185,626
Effective search space: 477807278
Effective search space used: 477807278
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.3 bits)