Query psy11025
Match_columns 535
No_of_seqs 288 out of 672
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 16:13:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11025.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11025hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09751 Es2: Nuclear protein 100.0 1.7E-67 3.6E-72 561.2 21.1 282 31-317 1-327 (414)
2 KOG2627|consensus 100.0 6.1E-64 1.3E-68 511.3 18.5 277 26-316 32-327 (488)
3 KOG1586|consensus 100.0 3E-36 6.5E-41 290.1 19.1 211 291-533 8-237 (288)
4 PF14938 SNAP: Soluble NSF att 100.0 6.7E-29 1.5E-33 252.9 19.4 197 316-534 27-239 (282)
5 KOG1585|consensus 99.9 2.5E-25 5.5E-30 216.0 16.5 194 310-533 17-231 (308)
6 KOG1586|consensus 99.9 2.2E-23 4.8E-28 201.4 17.1 181 320-510 59-278 (288)
7 PF14938 SNAP: Soluble NSF att 99.9 2.4E-21 5.2E-26 197.5 16.2 188 319-509 52-278 (282)
8 KOG1585|consensus 99.9 4E-21 8.7E-26 186.9 14.9 165 320-488 69-242 (308)
9 KOG4626|consensus 97.7 0.00049 1.1E-08 75.7 14.1 60 356-421 323-383 (966)
10 KOG1840|consensus 97.7 0.0021 4.6E-08 70.9 19.2 140 316-457 255-434 (508)
11 PF13424 TPR_12: Tetratricopep 97.5 0.0015 3.3E-08 52.9 11.2 72 352-423 4-77 (78)
12 TIGR03302 OM_YfiO outer membra 97.5 0.018 3.9E-07 56.4 20.6 172 320-521 38-229 (235)
13 PF09976 TPR_21: Tetratricopep 97.3 0.012 2.5E-07 53.9 15.6 135 350-520 9-143 (145)
14 KOG1840|consensus 97.3 0.024 5.2E-07 62.8 20.3 177 320-520 204-392 (508)
15 TIGR02521 type_IV_pilW type IV 97.2 0.015 3.3E-07 54.6 15.5 125 320-458 36-161 (234)
16 PF09976 TPR_21: Tetratricopep 97.0 0.039 8.5E-07 50.4 15.5 128 319-457 9-143 (145)
17 PRK11788 tetratricopeptide rep 96.9 0.063 1.4E-06 56.3 18.9 129 321-460 147-277 (389)
18 KOG4626|consensus 96.9 0.015 3.2E-07 64.5 14.1 138 317-469 267-457 (966)
19 KOG2003|consensus 96.8 0.079 1.7E-06 57.0 17.7 139 316-460 504-688 (840)
20 PRK11788 tetratricopeptide rep 96.7 0.057 1.2E-06 56.7 16.2 98 355-459 109-207 (389)
21 TIGR00990 3a0801s09 mitochondr 96.6 0.07 1.5E-06 60.4 17.4 22 499-520 546-567 (615)
22 PRK11189 lipoprotein NlpI; Pro 96.6 0.13 2.9E-06 52.9 17.9 182 322-520 71-261 (296)
23 TIGR00990 3a0801s09 mitochondr 96.5 0.056 1.2E-06 61.2 15.8 120 360-520 372-492 (615)
24 TIGR02521 type_IV_pilW type IV 96.5 0.19 4.1E-06 47.2 17.1 156 322-520 72-228 (234)
25 TIGR03302 OM_YfiO outer membra 96.4 0.071 1.5E-06 52.1 14.1 135 321-459 76-230 (235)
26 COG3063 PilF Tfp pilus assembl 96.4 0.067 1.4E-06 53.2 13.4 198 317-533 30-246 (250)
27 TIGR02917 PEP_TPR_lipo putativ 96.4 0.087 1.9E-06 60.1 16.7 26 356-381 638-664 (899)
28 KOG1155|consensus 96.4 0.041 8.8E-07 59.4 12.7 65 353-423 432-497 (559)
29 KOG3616|consensus 96.4 0.015 3.3E-07 65.3 9.6 61 377-437 750-810 (1636)
30 PRK10803 tol-pal system protei 96.4 0.039 8.5E-07 56.2 12.0 106 318-427 146-252 (263)
31 PF13525 YfiO: Outer membrane 96.3 0.11 2.4E-06 50.5 14.5 159 352-528 5-175 (203)
32 PRK09782 bacteriophage N4 rece 96.2 0.18 4E-06 60.3 18.3 23 498-520 680-702 (987)
33 TIGR02917 PEP_TPR_lipo putativ 96.2 0.27 5.8E-06 56.1 19.1 54 368-421 549-630 (899)
34 cd00189 TPR Tetratricopeptide 96.2 0.048 1E-06 42.5 9.1 88 322-419 7-95 (100)
35 PRK11447 cellulose synthase su 96.1 0.094 2E-06 63.9 15.5 22 499-520 675-696 (1157)
36 TIGR02795 tol_pal_ybgF tol-pal 96.1 0.06 1.3E-06 46.0 9.9 98 321-422 8-106 (119)
37 PRK10866 outer membrane biogen 96.0 0.18 4E-06 50.6 14.8 161 351-529 31-213 (243)
38 PF10602 RPN7: 26S proteasome 96.0 0.29 6.4E-06 46.8 15.4 127 374-526 18-145 (177)
39 PRK15174 Vi polysaccharide exp 96.0 0.27 5.7E-06 56.5 17.7 19 401-419 221-239 (656)
40 KOG1155|consensus 95.9 0.041 8.9E-07 59.3 9.9 95 320-418 437-533 (559)
41 PRK12370 invasion protein regu 95.9 0.3 6.6E-06 54.7 17.4 22 499-520 445-466 (553)
42 KOG1129|consensus 95.9 0.12 2.5E-06 53.9 12.4 93 319-422 227-320 (478)
43 PF13424 TPR_12: Tetratricopep 95.8 0.071 1.5E-06 43.0 8.6 63 321-383 11-77 (78)
44 cd05804 StaR_like StaR_like; a 95.5 0.76 1.6E-05 47.5 17.5 93 397-520 119-211 (355)
45 cd00189 TPR Tetratricopeptide 95.3 0.2 4.3E-06 38.9 9.7 87 358-457 5-93 (100)
46 PF10602 RPN7: 26S proteasome 95.3 2.3 4.9E-05 40.7 18.4 105 350-457 33-138 (177)
47 PRK11447 cellulose synthase su 95.2 0.66 1.4E-05 56.7 18.1 74 380-459 581-664 (1157)
48 PRK10049 pgaA outer membrane p 95.2 0.44 9.5E-06 55.6 16.0 23 498-520 430-452 (765)
49 PLN03088 SGT1, suppressor of 95.2 0.18 3.8E-06 53.5 11.6 84 329-422 16-100 (356)
50 PRK15174 Vi polysaccharide exp 95.2 0.87 1.9E-05 52.3 17.9 48 368-421 228-279 (656)
51 PRK02603 photosystem I assembl 95.1 0.25 5.5E-06 46.3 11.3 99 322-421 42-142 (172)
52 PLN03088 SGT1, suppressor of 95.1 0.17 3.6E-06 53.7 11.1 100 352-464 2-102 (356)
53 PF12895 Apc3: Anaphase-promot 95.1 0.19 4E-06 41.4 9.1 81 366-457 3-83 (84)
54 KOG3617|consensus 95.0 0.75 1.6E-05 53.0 16.0 100 320-421 876-996 (1416)
55 TIGR02795 tol_pal_ybgF tol-pal 94.7 0.38 8.1E-06 41.0 10.3 98 357-460 7-104 (119)
56 KOG0553|consensus 94.6 0.36 7.9E-06 49.7 11.4 90 356-457 85-174 (304)
57 CHL00033 ycf3 photosystem I as 94.6 0.48 1E-05 44.2 11.6 95 328-423 48-144 (168)
58 COG3063 PilF Tfp pilus assembl 94.5 0.35 7.5E-06 48.2 10.4 140 350-529 32-177 (250)
59 PRK15359 type III secretion sy 94.4 0.39 8.5E-06 44.0 10.3 87 365-464 37-124 (144)
60 TIGR02552 LcrH_SycD type III s 94.4 0.62 1.3E-05 41.1 11.4 92 321-422 23-115 (135)
61 PRK10803 tol-pal system protei 94.4 0.49 1.1E-05 48.2 11.9 99 356-460 146-245 (263)
62 KOG1126|consensus 94.4 0.15 3.2E-06 57.1 8.6 120 336-461 422-586 (638)
63 PRK09782 bacteriophage N4 rece 94.3 1.5 3.3E-05 52.6 17.6 20 440-459 685-704 (987)
64 PF13414 TPR_11: TPR repeat; P 94.1 0.43 9.3E-06 37.3 8.6 60 355-420 5-66 (69)
65 PF12895 Apc3: Anaphase-promot 94.0 0.57 1.2E-05 38.4 9.5 81 329-418 3-84 (84)
66 PRK15363 pathogenicity island 94.0 0.8 1.7E-05 43.1 11.4 102 349-463 32-134 (157)
67 PRK12370 invasion protein regu 93.9 2.2 4.8E-05 47.9 17.0 18 441-458 450-467 (553)
68 CHL00033 ycf3 photosystem I as 93.8 1.4 3.1E-05 41.0 12.9 106 349-457 31-138 (168)
69 PF11817 Foie-gras_1: Foie gra 93.7 0.63 1.4E-05 46.8 11.1 83 368-450 154-236 (247)
70 PRK04841 transcriptional regul 93.7 4.6 0.0001 47.6 20.0 130 365-520 504-637 (903)
71 KOG3617|consensus 93.7 1.1 2.4E-05 51.7 13.7 66 353-418 1021-1106(1416)
72 PF12688 TPR_5: Tetratrico pep 93.5 0.56 1.2E-05 42.1 9.2 95 355-455 3-98 (120)
73 PRK15359 type III secretion sy 93.5 1 2.3E-05 41.2 11.3 97 316-422 22-122 (144)
74 cd05804 StaR_like StaR_like; a 93.5 7.1 0.00015 40.3 19.0 92 322-419 121-213 (355)
75 PF13429 TPR_15: Tetratricopep 93.4 0.37 8E-06 48.7 9.0 87 322-419 51-137 (280)
76 PRK15179 Vi polysaccharide bio 93.4 3 6.5E-05 48.3 17.2 148 331-520 65-213 (694)
77 PRK10866 outer membrane biogen 93.4 9.6 0.00021 38.2 21.4 139 321-460 38-203 (243)
78 PF13429 TPR_15: Tetratricopep 93.3 0.9 2E-05 45.8 11.6 126 319-458 114-240 (280)
79 PF13432 TPR_16: Tetratricopep 92.9 0.39 8.4E-06 37.2 6.4 56 359-420 4-59 (65)
80 PRK04841 transcriptional regul 92.9 10 0.00023 44.6 21.2 59 364-423 585-643 (903)
81 KOG3616|consensus 92.7 3.5 7.6E-05 47.2 15.4 85 353-438 661-752 (1636)
82 COG2956 Predicted N-acetylgluc 92.5 10 0.00022 39.9 17.6 135 320-467 112-247 (389)
83 PRK02603 photosystem I assembl 92.5 2.1 4.6E-05 40.0 12.1 67 353-422 35-102 (172)
84 PF13525 YfiO: Outer membrane 92.4 11 0.00024 36.4 20.2 133 327-460 17-169 (203)
85 PF12688 TPR_5: Tetratrico pep 92.4 2 4.4E-05 38.5 11.2 95 320-418 6-101 (120)
86 KOG2003|consensus 92.4 2.4 5.1E-05 46.1 13.2 48 368-421 540-587 (840)
87 KOG0553|consensus 92.3 1.1 2.4E-05 46.2 10.4 94 389-520 79-174 (304)
88 PRK15363 pathogenicity island 92.3 1.7 3.6E-05 41.0 10.7 81 404-520 47-128 (157)
89 TIGR02552 LcrH_SycD type III s 91.7 4.5 9.8E-05 35.5 12.7 100 348-460 13-113 (135)
90 PRK15179 Vi polysaccharide bio 91.6 3.1 6.8E-05 48.2 14.3 123 322-460 93-216 (694)
91 KOG2076|consensus 91.6 2.6 5.6E-05 49.1 13.3 79 320-402 178-271 (895)
92 COG2976 Uncharacterized protei 90.8 12 0.00026 36.7 15.1 138 351-526 52-191 (207)
93 KOG2047|consensus 90.8 4.1 8.9E-05 46.1 13.4 84 331-417 566-654 (835)
94 PF13176 TPR_7: Tetratricopept 90.7 0.57 1.2E-05 32.5 4.5 28 394-421 1-28 (36)
95 PF03704 BTAD: Bacterial trans 90.6 5.3 0.00012 36.0 12.3 90 365-460 19-124 (146)
96 KOG2002|consensus 90.4 5.2 0.00011 47.2 14.2 160 353-520 414-589 (1018)
97 PF09986 DUF2225: Uncharacteri 90.1 10 0.00022 37.5 14.5 95 331-425 93-198 (214)
98 KOG0548|consensus 89.9 12 0.00025 41.6 15.8 24 497-520 428-451 (539)
99 KOG0547|consensus 89.7 10 0.00022 41.9 15.0 20 403-422 548-567 (606)
100 PF04733 Coatomer_E: Coatomer 89.4 2 4.4E-05 44.3 9.4 127 356-520 118-261 (290)
101 PF13414 TPR_11: TPR repeat; P 89.3 1.5 3.2E-05 34.1 6.5 58 320-381 8-67 (69)
102 PF14559 TPR_19: Tetratricopep 89.3 1.5 3.2E-05 34.0 6.5 56 363-424 2-57 (68)
103 KOG1125|consensus 88.6 13 0.00029 41.6 15.2 43 442-486 473-516 (579)
104 KOG1126|consensus 88.4 3.7 7.9E-05 46.4 10.9 49 401-456 566-615 (638)
105 KOG2076|consensus 88.2 1.5 3.2E-05 51.0 7.9 89 320-417 419-508 (895)
106 PRK10370 formate-dependent nit 88.1 4.1 8.9E-05 39.5 10.1 45 369-419 127-171 (198)
107 PF06552 TOM20_plant: Plant sp 88.1 6.9 0.00015 37.8 11.2 19 486-504 161-179 (186)
108 COG1729 Uncharacterized protei 87.9 2.6 5.6E-05 42.9 8.6 103 318-425 145-248 (262)
109 PRK10747 putative protoheme IX 87.5 17 0.00038 38.9 15.5 24 497-520 330-353 (398)
110 PRK11189 lipoprotein NlpI; Pro 87.5 11 0.00024 38.7 13.4 99 349-460 60-160 (296)
111 PF04190 DUF410: Protein of un 87.3 24 0.00053 35.8 15.5 145 316-460 4-169 (260)
112 PRK10370 formate-dependent nit 87.2 12 0.00027 36.2 12.8 93 355-460 75-172 (198)
113 PRK10049 pgaA outer membrane p 86.9 10 0.00022 44.5 14.1 93 320-423 54-147 (765)
114 PF10345 Cohesin_load: Cohesin 86.6 57 0.0012 37.2 19.6 172 327-520 72-250 (608)
115 KOG0543|consensus 86.5 10 0.00022 40.8 12.4 61 393-460 258-319 (397)
116 KOG0687|consensus 86.4 24 0.00053 37.2 14.7 110 389-528 101-215 (393)
117 PF13432 TPR_16: Tetratricopep 86.3 1.5 3.2E-05 33.8 4.8 57 322-382 4-61 (65)
118 COG2976 Uncharacterized protei 86.2 19 0.00042 35.2 13.1 93 355-457 92-184 (207)
119 COG1729 Uncharacterized protei 85.8 3.8 8.1E-05 41.8 8.5 96 355-460 144-243 (262)
120 PF12862 Apc5: Anaphase-promot 85.6 15 0.00032 31.0 11.0 70 356-425 2-74 (94)
121 KOG1173|consensus 85.6 17 0.00036 40.8 13.8 134 317-457 327-514 (611)
122 KOG0547|consensus 85.1 14 0.0003 40.9 12.7 82 332-422 411-492 (606)
123 cd02681 MIT_calpain7_1 MIT: do 84.8 9.5 0.00021 31.5 9.0 58 352-409 6-68 (76)
124 KOG0543|consensus 84.6 12 0.00025 40.3 11.8 22 499-520 295-316 (397)
125 PRK14574 hmsH outer membrane p 84.4 21 0.00045 42.4 15.1 115 327-457 46-161 (822)
126 PRK15331 chaperone protein Sic 84.2 12 0.00026 35.6 10.5 98 350-460 35-133 (165)
127 PRK10747 putative protoheme IX 83.3 13 0.00028 39.9 11.9 116 329-459 98-214 (398)
128 PLN03218 maturation of RBCL 1; 83.1 67 0.0015 39.3 18.9 41 379-419 549-606 (1060)
129 PF03704 BTAD: Bacterial trans 82.9 17 0.00037 32.7 11.0 92 326-423 17-127 (146)
130 PRK14720 transcript cleavage f 82.8 20 0.00043 42.8 13.8 73 355-434 118-191 (906)
131 KOG0548|consensus 82.5 19 0.00041 40.0 12.7 52 352-403 358-410 (539)
132 PF02071 NSF: Aromatic-di-Alan 82.0 0.54 1.2E-05 25.3 0.4 10 335-344 2-11 (12)
133 KOG4234|consensus 81.9 11 0.00024 37.3 9.5 86 331-422 111-198 (271)
134 PF13371 TPR_9: Tetratricopept 81.7 5.6 0.00012 31.1 6.4 49 366-420 9-57 (73)
135 COG5187 RPN7 26S proteasome re 81.6 44 0.00096 34.8 14.1 130 369-528 92-226 (412)
136 PRK14720 transcript cleavage f 81.4 17 0.00037 43.3 12.7 76 321-400 122-197 (906)
137 PF12569 NARP1: NMDA receptor- 81.3 26 0.00056 39.3 13.6 131 357-520 198-330 (517)
138 PF13512 TPR_18: Tetratricopep 81.0 13 0.00029 34.5 9.4 65 392-460 11-75 (142)
139 PLN03098 LPA1 LOW PSII ACCUMUL 80.8 6.2 0.00013 43.2 8.2 64 316-382 70-142 (453)
140 KOG1920|consensus 80.7 19 0.00042 43.5 12.6 27 317-343 954-980 (1265)
141 KOG2002|consensus 80.7 41 0.00088 40.1 15.0 89 363-459 281-369 (1018)
142 KOG1130|consensus 79.4 58 0.0012 35.6 14.5 69 355-424 237-307 (639)
143 PLN03081 pentatricopeptide (PP 79.4 36 0.00079 39.2 14.5 42 378-419 265-317 (697)
144 PLN03218 maturation of RBCL 1; 79.3 57 0.0012 39.9 16.5 17 504-520 763-779 (1060)
145 PF07719 TPR_2: Tetratricopept 79.2 5 0.00011 26.4 4.6 29 393-421 2-30 (34)
146 PF04190 DUF410: Protein of un 79.1 53 0.0011 33.4 14.0 28 493-520 139-166 (260)
147 cd02678 MIT_VPS4 MIT: domain c 78.6 25 0.00055 28.6 9.4 54 353-406 7-64 (75)
148 PF13174 TPR_6: Tetratricopept 78.5 4.6 9.9E-05 26.4 4.2 29 394-422 2-30 (33)
149 PF00515 TPR_1: Tetratricopept 78.3 5.5 0.00012 26.5 4.6 28 393-420 2-29 (34)
150 PF13181 TPR_8: Tetratricopept 78.3 5.1 0.00011 26.6 4.4 29 393-421 2-30 (34)
151 PF05843 Suf: Suppressor of fo 78.2 33 0.00071 35.1 12.3 123 328-463 14-138 (280)
152 KOG1129|consensus 77.9 45 0.00097 35.4 12.9 131 356-520 293-454 (478)
153 PLN03081 pentatricopeptide (PP 77.8 53 0.0011 37.9 15.2 21 320-340 264-284 (697)
154 cd02682 MIT_AAA_Arch MIT: doma 77.7 15 0.00032 30.4 7.7 32 352-383 6-37 (75)
155 KOG2376|consensus 77.6 87 0.0019 35.6 15.8 62 397-460 180-252 (652)
156 COG4105 ComL DNA uptake lipopr 77.6 69 0.0015 32.6 14.0 166 351-530 33-206 (254)
157 PRK14574 hmsH outer membrane p 77.1 70 0.0015 38.1 16.0 122 322-460 75-197 (822)
158 KOG0550|consensus 76.9 14 0.00029 40.1 9.1 87 329-421 263-350 (486)
159 COG2956 Predicted N-acetylgluc 76.7 1.1E+02 0.0023 32.5 16.9 65 351-421 178-243 (389)
160 PF00515 TPR_1: Tetratricopept 76.3 7 0.00015 26.0 4.7 30 353-382 1-31 (34)
161 PF13374 TPR_10: Tetratricopep 76.2 6.3 0.00014 27.0 4.6 32 392-423 2-33 (42)
162 PF13176 TPR_7: Tetratricopept 74.9 7.8 0.00017 26.7 4.7 29 356-384 2-31 (36)
163 cd02683 MIT_1 MIT: domain cont 74.0 35 0.00076 28.1 9.1 57 353-409 7-67 (77)
164 KOG2041|consensus 73.8 49 0.0011 38.3 12.7 131 356-520 750-890 (1189)
165 PF13181 TPR_8: Tetratricopept 73.6 8.4 0.00018 25.5 4.5 31 353-383 1-32 (34)
166 PF12569 NARP1: NMDA receptor- 73.3 43 0.00094 37.6 12.5 132 316-457 195-330 (517)
167 PF11817 Foie-gras_1: Foie gra 73.1 49 0.0011 33.1 11.9 86 331-416 154-242 (247)
168 TIGR00540 hemY_coli hemY prote 73.1 44 0.00094 35.9 12.2 126 320-457 268-395 (409)
169 KOG4555|consensus 71.8 62 0.0013 30.1 10.8 89 327-421 55-144 (175)
170 cd02680 MIT_calpain7_2 MIT: do 71.7 29 0.00064 28.6 8.0 35 365-399 19-53 (75)
171 KOG2796|consensus 71.6 21 0.00046 36.7 8.6 116 368-520 193-311 (366)
172 PF09295 ChAPs: ChAPs (Chs5p-A 71.3 44 0.00096 36.2 11.6 110 328-457 182-293 (395)
173 PF10300 DUF3808: Protein of u 71.0 67 0.0014 35.5 13.2 124 366-525 247-377 (468)
174 PF07719 TPR_2: Tetratricopept 70.9 11 0.00025 24.6 4.7 30 354-383 2-32 (34)
175 PLN03077 Protein ECB2; Provisi 70.1 95 0.0021 36.7 15.1 18 401-418 563-580 (857)
176 KOG2376|consensus 70.1 1.3E+02 0.0027 34.3 14.8 21 399-419 117-137 (652)
177 KOG2908|consensus 69.5 77 0.0017 33.7 12.3 127 372-510 58-188 (380)
178 PLN03077 Protein ECB2; Provisi 68.8 2.5E+02 0.0054 33.2 18.7 23 500-522 630-652 (857)
179 PF14559 TPR_19: Tetratricopep 67.1 20 0.00044 27.4 6.1 50 404-460 3-53 (68)
180 PRK10153 DNA-binding transcrip 66.4 1E+02 0.0022 34.7 13.5 53 399-458 427-479 (517)
181 PF09986 DUF2225: Uncharacteri 66.0 70 0.0015 31.6 10.9 92 367-460 92-193 (214)
182 PF13371 TPR_9: Tetratricopept 65.9 26 0.00057 27.2 6.6 58 323-384 3-61 (73)
183 PRK15331 chaperone protein Sic 65.8 20 0.00044 34.1 6.7 20 368-387 87-106 (165)
184 PF13512 TPR_18: Tetratricopep 65.4 33 0.00071 31.9 7.9 70 352-424 10-79 (142)
185 KOG4162|consensus 65.2 48 0.001 38.5 10.6 122 320-457 655-779 (799)
186 cd02677 MIT_SNX15 MIT: domain 64.7 50 0.0011 27.1 8.0 33 352-384 6-38 (75)
187 PF04212 MIT: MIT (microtubule 63.7 72 0.0016 25.2 9.6 31 353-383 6-36 (69)
188 KOG1174|consensus 63.5 1.3E+02 0.0028 33.0 12.7 67 349-415 297-378 (564)
189 KOG1920|consensus 63.4 1.3E+02 0.0027 37.0 13.8 32 394-425 954-985 (1265)
190 PF10516 SHNi-TPR: SHNi-TPR; 62.7 15 0.00032 26.3 4.0 32 392-423 1-32 (38)
191 TIGR00540 hemY_coli hemY prote 62.0 2.3E+02 0.0049 30.4 16.8 84 329-421 98-182 (409)
192 PRK10153 DNA-binding transcrip 61.8 64 0.0014 36.2 10.9 49 366-421 434-482 (517)
193 KOG2041|consensus 61.5 58 0.0012 37.7 10.2 24 313-338 809-832 (1189)
194 KOG1538|consensus 61.4 2.8E+02 0.006 32.3 15.3 31 292-330 572-613 (1081)
195 KOG3060|consensus 61.3 1E+02 0.0022 31.6 11.0 45 368-418 136-180 (289)
196 PF04781 DUF627: Protein of un 59.9 76 0.0017 28.3 8.8 90 321-417 3-103 (111)
197 cd02682 MIT_AAA_Arch MIT: doma 59.9 67 0.0015 26.5 7.9 34 370-404 5-38 (75)
198 PF08631 SPO22: Meiosis protei 59.6 1.9E+02 0.0041 29.4 13.2 58 327-384 5-68 (278)
199 PF10345 Cohesin_load: Cohesin 58.5 3.3E+02 0.0071 31.1 20.3 144 348-519 54-203 (608)
200 PLN03098 LPA1 LOW PSII ACCUMUL 58.2 37 0.00081 37.3 7.9 47 316-362 89-141 (453)
201 PF13428 TPR_14: Tetratricopep 58.0 18 0.0004 25.8 4.0 28 394-421 3-30 (44)
202 KOG1941|consensus 58.0 2.8E+02 0.006 30.1 16.5 119 316-434 200-333 (518)
203 KOG1915|consensus 57.7 1.1E+02 0.0023 34.2 11.1 100 314-421 168-273 (677)
204 PF09295 ChAPs: ChAPs (Chs5p-A 57.1 66 0.0014 34.9 9.7 95 317-418 184-294 (395)
205 KOG3081|consensus 54.8 1.3E+02 0.0029 31.0 10.6 18 440-457 215-232 (299)
206 smart00745 MIT Microtubule Int 54.7 1.1E+02 0.0024 24.5 9.4 19 366-384 22-40 (77)
207 PF04733 Coatomer_E: Coatomer 54.7 29 0.00062 35.9 6.2 118 357-520 106-226 (290)
208 KOG0550|consensus 53.0 2.1E+02 0.0046 31.4 12.3 125 319-460 220-349 (486)
209 cd02684 MIT_2 MIT: domain cont 53.0 1.3E+02 0.0027 24.7 9.0 29 355-383 9-37 (75)
210 PF13374 TPR_10: Tetratricopep 52.8 38 0.00083 22.9 4.9 30 354-383 3-33 (42)
211 cd02656 MIT MIT: domain contai 52.6 1.2E+02 0.0026 24.3 9.4 19 366-384 20-38 (75)
212 KOG1125|consensus 51.7 36 0.00077 38.3 6.6 40 382-421 440-493 (579)
213 PF12739 TRAPPC-Trs85: ER-Golg 51.7 1.1E+02 0.0024 33.1 10.5 105 319-423 279-401 (414)
214 PF11207 DUF2989: Protein of u 51.2 41 0.00089 33.1 6.3 57 353-411 141-197 (203)
215 COG0790 FOG: TPR repeat, SEL1 51.0 1.7E+02 0.0037 29.3 11.2 47 369-423 172-222 (292)
216 KOG0624|consensus 50.5 3.5E+02 0.0077 29.1 13.4 94 366-460 67-183 (504)
217 KOG0686|consensus 50.2 1.4E+02 0.003 32.6 10.4 100 354-456 151-253 (466)
218 KOG4234|consensus 49.9 1.5E+02 0.0034 29.5 9.9 13 317-329 110-122 (271)
219 smart00028 TPR Tetratricopepti 49.8 35 0.00075 20.3 3.9 26 394-419 3-28 (34)
220 KOG4340|consensus 49.1 3.5E+02 0.0076 28.6 13.9 31 499-529 182-214 (459)
221 COG5010 TadD Flp pilus assembl 49.0 3.1E+02 0.0067 28.0 12.5 83 362-457 110-193 (257)
222 KOG1130|consensus 48.8 1.3E+02 0.0029 32.9 10.0 131 324-454 57-217 (639)
223 PF08631 SPO22: Meiosis protei 48.6 3.1E+02 0.0066 27.8 14.3 61 364-424 5-68 (278)
224 KOG0551|consensus 48.6 3.3E+02 0.0071 29.1 12.6 98 318-421 77-182 (390)
225 PF13431 TPR_17: Tetratricopep 48.2 19 0.0004 24.7 2.5 33 374-412 1-33 (34)
226 KOG2047|consensus 48.0 3.7E+02 0.008 31.2 13.6 60 320-379 392-452 (835)
227 KOG3785|consensus 47.8 4E+02 0.0086 28.9 14.4 23 499-521 289-311 (557)
228 KOG3060|consensus 45.3 3.1E+02 0.0067 28.3 11.5 80 370-457 97-179 (289)
229 PF10300 DUF3808: Protein of u 44.0 2.4E+02 0.0053 31.1 11.8 99 320-423 272-378 (468)
230 PF12862 Apc5: Anaphase-promot 43.6 1.9E+02 0.0042 24.1 9.2 74 328-401 11-90 (94)
231 KOG0624|consensus 42.9 2E+02 0.0044 30.9 10.1 97 322-422 314-422 (504)
232 PF12739 TRAPPC-Trs85: ER-Golg 42.0 3.6E+02 0.0079 29.1 12.6 32 371-402 369-400 (414)
233 KOG4814|consensus 41.9 87 0.0019 36.0 7.7 66 356-421 358-423 (872)
234 PF04053 Coatomer_WDAD: Coatom 41.8 2.8E+02 0.006 30.6 11.7 86 368-457 325-427 (443)
235 KOG1941|consensus 41.8 4.9E+02 0.011 28.3 19.2 100 322-421 169-275 (518)
236 PF07163 Pex26: Pex26 protein; 41.6 1.4E+02 0.003 31.1 8.5 121 388-533 31-159 (309)
237 KOG3081|consensus 41.2 2.6E+02 0.0057 28.9 10.3 8 502-509 248-255 (299)
238 PF13174 TPR_6: Tetratricopept 40.3 59 0.0013 20.8 4.0 27 356-382 3-30 (33)
239 PF04184 ST7: ST7 protein; In 40.3 2.8E+02 0.0061 31.1 11.1 60 397-460 264-323 (539)
240 KOG4642|consensus 39.7 84 0.0018 32.0 6.5 70 316-385 24-111 (284)
241 KOG1914|consensus 39.6 6.3E+02 0.014 28.9 14.6 20 438-457 407-426 (656)
242 smart00745 MIT Microtubule Int 39.4 2E+02 0.0043 23.0 8.1 36 368-404 5-40 (77)
243 COG0457 NrfG FOG: TPR repeat [ 38.8 2.6E+02 0.0057 24.2 10.0 92 324-421 139-231 (291)
244 COG3947 Response regulator con 38.6 94 0.002 32.6 6.8 63 392-460 279-341 (361)
245 KOG4648|consensus 37.9 1.1E+02 0.0024 32.7 7.3 53 331-383 113-169 (536)
246 KOG0985|consensus 35.3 6.1E+02 0.013 31.3 13.2 44 368-422 1120-1163(1666)
247 KOG1550|consensus 35.1 3.4E+02 0.0074 30.6 11.4 50 367-421 308-357 (552)
248 PF04184 ST7: ST7 protein; In 34.3 6.3E+02 0.014 28.5 12.6 14 368-381 216-229 (539)
249 PF02259 FAT: FAT domain; Int 33.9 2.6E+02 0.0056 28.5 9.6 104 320-423 151-289 (352)
250 KOG1498|consensus 33.8 5.9E+02 0.013 27.8 11.9 65 392-457 131-196 (439)
251 KOG2908|consensus 32.9 5E+02 0.011 27.8 11.1 30 491-520 111-140 (380)
252 KOG1497|consensus 32.7 6.4E+02 0.014 26.9 17.2 99 320-418 101-210 (399)
253 PF14649 Spatacsin_C: Spatacsi 32.5 2.4E+02 0.0052 29.4 8.8 86 315-408 115-211 (296)
254 KOG0686|consensus 32.4 3.3E+02 0.0072 29.8 9.9 52 394-448 152-203 (466)
255 KOG1173|consensus 31.8 2.5E+02 0.0055 31.8 9.2 55 359-419 461-516 (611)
256 smart00671 SEL1 Sel1-like repe 31.7 83 0.0018 20.6 3.7 26 356-381 4-34 (36)
257 PF14711 Nitr_red_bet_C: Respi 31.2 31 0.00067 29.1 1.7 38 52-89 20-58 (83)
258 KOG1174|consensus 31.0 3.8E+02 0.0082 29.6 10.0 50 368-423 420-469 (564)
259 COG4649 Uncharacterized protei 30.4 2.6E+02 0.0056 27.3 7.9 14 332-345 56-69 (221)
260 cd02681 MIT_calpain7_1 MIT: do 30.3 3.1E+02 0.0068 22.6 7.6 21 404-424 18-38 (76)
261 PF13428 TPR_14: Tetratricopep 29.5 1.2E+02 0.0025 21.5 4.4 30 356-385 4-34 (44)
262 cd02680 MIT_calpain7_2 MIT: do 28.8 1.4E+02 0.003 24.7 5.1 20 405-424 19-38 (75)
263 KOG1127|consensus 28.6 7.4E+02 0.016 30.4 12.6 83 333-421 458-555 (1238)
264 COG5010 TadD Flp pilus assembl 28.4 6.6E+02 0.014 25.7 12.9 53 398-457 106-159 (257)
265 PF07834 RanGAP1_C: RanGAP1 C- 28.4 25 0.00054 34.0 0.8 15 42-56 136-150 (183)
266 cd02679 MIT_spastin MIT: domai 28.1 1.3E+02 0.0027 25.1 4.8 15 368-382 24-38 (79)
267 PF12968 DUF3856: Domain of Un 27.5 4.9E+02 0.011 23.9 13.0 104 354-457 11-125 (144)
268 PF05843 Suf: Suppressor of fo 27.2 5.9E+02 0.013 25.8 10.7 102 320-424 19-139 (280)
269 cd02679 MIT_spastin MIT: domai 27.2 3.7E+02 0.008 22.4 8.5 36 368-404 5-40 (79)
270 PF12968 DUF3856: Domain of Un 26.7 4.4E+02 0.0094 24.2 8.2 93 329-423 23-131 (144)
271 KOG1127|consensus 26.5 4.5E+02 0.0098 32.1 10.4 101 320-423 601-702 (1238)
272 cd02683 MIT_1 MIT: domain cont 26.3 1.7E+02 0.0037 24.0 5.3 32 391-423 6-37 (77)
273 cd02678 MIT_VPS4 MIT: domain c 26.2 1.6E+02 0.0035 23.8 5.1 19 405-423 19-37 (75)
274 cd09240 BRO1_Alix Protein-inte 26.1 7.9E+02 0.017 25.9 13.2 30 316-345 114-158 (346)
275 KOG0495|consensus 25.4 2.6E+02 0.0056 32.5 8.0 108 338-457 634-744 (913)
276 PF12941 HCV_NS5a_C: HCV NS5a 25.1 24 0.00052 35.0 0.0 31 21-53 145-175 (244)
277 PF08626 TRAPPC9-Trs120: Trans 24.7 8E+02 0.017 30.6 12.9 30 321-350 248-277 (1185)
278 COG3071 HemY Uncharacterized e 24.6 9.3E+02 0.02 26.2 12.7 119 320-457 268-386 (400)
279 KOG1070|consensus 23.6 8.5E+02 0.018 31.0 12.1 111 369-520 1514-1625(1710)
280 KOG4340|consensus 23.4 5.3E+02 0.012 27.3 9.2 58 395-459 147-205 (459)
281 cd02684 MIT_2 MIT: domain cont 23.1 2.2E+02 0.0048 23.2 5.4 19 405-423 19-37 (75)
282 COG1516 FliS Flagellin-specifi 23.0 2.3E+02 0.0051 26.0 5.9 31 353-383 32-62 (132)
283 smart00299 CLH Clathrin heavy 22.8 5.3E+02 0.011 22.7 9.9 90 317-421 9-98 (140)
284 cd02677 MIT_SNX15 MIT: domain 22.5 2.4E+02 0.0051 23.1 5.4 20 405-424 19-38 (75)
285 PF04212 MIT: MIT (microtubule 22.4 3.8E+02 0.0083 20.9 8.2 18 405-422 18-35 (69)
286 PF04053 Coatomer_WDAD: Coatom 21.9 4.6E+02 0.0099 28.9 9.1 72 367-442 362-439 (443)
287 COG4783 Putative Zn-dependent 21.1 4.6E+02 0.0099 29.2 8.7 90 318-418 310-400 (484)
288 KOG1464|consensus 20.4 1.8E+02 0.0038 30.3 5.1 55 362-418 37-91 (440)
289 KOG1938|consensus 20.3 1.3E+02 0.0029 36.0 4.7 54 333-386 292-350 (960)
290 PRK02733 photosystem I reactio 20.2 71 0.0015 23.5 1.6 16 42-58 22-37 (42)
291 PF06500 DUF1100: Alpha/beta h 20.2 1.8E+02 0.004 31.7 5.5 32 315-346 94-130 (411)
No 1
>PF09751 Es2: Nuclear protein Es2; InterPro: IPR019148 This entry represents a family of proteins of approximately 500 residues with alternating regions of low complexity and conservation where the domain similarities are strong. Apart from a predicted coiled-coil domain, no other known functional domains have been characterised. May be involved in pre-mRNA splicing and has been associated with the spliceosome C complex. The protein appears to be expressed in the nucleus, particularly in the pons sub-region of the brain. It is clearly necessary for normal development of the nervous system [].
Probab=100.00 E-value=1.7e-67 Score=561.19 Aligned_cols=282 Identities=34% Similarity=0.497 Sum_probs=219.0
Q ss_pred CCCCcCChHHHHHHHHhhhhhccCCCcHHhhhhHHHHHHHhhcCHHHHHHHHHHhcC-CCCccCCCCCCCCCCCCCCCcc
Q psy11025 31 AAPSYVSPRDAEQKIAEIIERDFFPDLEKLHAQNDFLDAMELNDVQKLRELYAKYSN-STPYVDRCESSPATFETPEHFT 109 (535)
Q Consensus 31 ~~~~VLdEd~Y~~~L~~II~RDfFPdL~kl~~q~eyL~A~~s~D~~~i~~~~~~~~~-~~~~~~~~~~~p~~~~TP~~~~ 109 (535)
|+++|||||+||++|++||+|||||||++|++|+||||||++||++||++++++|.. +++.......||++++||...+
T Consensus 1 r~~~vL~Ed~Y~~~l~~II~RDfFPdL~~l~~q~eyLeA~es~D~~~ir~~~~k~~~~~~~~~~~~~~tp~~~~tp~~~~ 80 (414)
T PF09751_consen 1 RKQKVLDEDEYTEALSKIIQRDFFPDLPKLRAQNEYLEALESNDPERIREAQRKLSSRMRKSSRRSSPTPGRFRTPSSSS 80 (414)
T ss_pred CCCccccHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCCCcCCCCCCccCCCcccc
Confidence 578999999999999999999999999999999999999999999999999999983 3322211245777777775321
Q ss_pred cc---------ccc-------CCCCCCCcccccCCCC------CCCCCCCCCCChHHHhhhcCCccchhHHHHHHHHHHh
Q psy11025 110 SL---------EEA-------GSADHEASVRSQGSCS------SKKSTSGKYQSLNEFLSTHTSEDNQSFEDIIEHAKKK 167 (535)
Q Consensus 110 ~~---------~~~-------~~~~~p~~~~s~~~~~------~~~~~~~~~~sLd~F~~kyTSEDN~SF~~il~~~n~k 167 (535)
.. +.. ...++|+++.++.... .....++++||||+||+|||||||+||++|||++|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~tp~~~~~dtp~s~~~~~~~~~~~~~~~~~~~~~~~lSLD~F~akYTSEDNaSF~eIle~~n~k 160 (414)
T PF09751_consen 81 GTPSTPPPSTPSTPGDNTPSGWGGDTPMSSASSATSDDEEGKGKKKKNYDTNLSLDAFQAKYTSEDNASFEEILEKQNQK 160 (414)
T ss_pred cCCCCCCCCCCCCCCCCCCcccCCCCCCCccccccccccccccccccccccCCCHHHHHhhccchhHHHHHHHHHHHHHH
Confidence 10 000 0123444433221111 1223358999999999999999999999999999999
Q ss_pred hhhhcccccccCCCCccchhhhhcCCchHhhhhh----hcccCCcCccccCcCccCCccccCCCCCCCCH-HHHHHHhc-
Q psy11025 168 HRIKYPWLYCGEDEAPENTSRFLELPSMQEQIDQ----AKDKDRDRRIQTWKFVNKNSAMYTPDGVELTK-DEQIEMAR- 241 (535)
Q Consensus 168 ~~~k~awl~~~e~~~~~~~~~~l~~~~~~~~~~~----~~~~~r~~~~~~W~~~~~N~LMf~P~~~~~~~-~~~~~~~~- 241 (535)
+|+||+|||+.+..++.++...+++++++.+... ...++||+.+|+|+|+++|+|||+|++++.+. ++..+...
T Consensus 161 rreKyaWl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~rp~~~d~W~~k~rN~LMf~P~~~~~~~~e~~~~~~~~ 240 (414)
T PF09751_consen 161 RREKYAWLYDNEKESNRRLAQQLALPSIEEQDKAGIRSLAIEDRPAAPDTWKYKARNSLMFPPDGVEDTPHETIEQKARA 240 (414)
T ss_pred HHHHhHHHHhcccccHHHHHHHhhcchhhhhhccccchhhhhcCCCCCccccccccccccccCCCCcccccchhhhhhhc
Confidence 9999999999877788877777777765432110 11258999999999999999999999999984 44444433
Q ss_pred --CCCceeccCCCCC------CCCCCccccHHHHHHHHhhhhhhhhcCCC---CCCCCcccCCCCccccccccccccccc
Q psy11025 242 --NRMSINHSGTRLH------VNPFDEQQSKEALHDLAKTQAISSLSGKI---GVDGKEITLNSTPRNREAASTVLEKGA 310 (535)
Q Consensus 242 --~~k~I~~~NTR~~------~~p~~~~~~~~~~~~a~~~~~~~~~~g~~---~~~g~e~~~~~~p~v~gy~fv~~~~~~ 310 (535)
+||+|+|.||||+ .+++..++++++|.+|+++++. ...|++ |.+|+++ ||+||||+||.+++|.
T Consensus 241 ~~~pk~I~~~NTR~p~~~~~~~~~~~~s~s~s~i~~a~~~~~~-~~~~~~~~~g~egk~~----tP~vnGy~fV~tpsp~ 315 (414)
T PF09751_consen 241 PSPPKEIVHANTRFPESTPDESNSFPPSPSRSAIDDAIAGRPR-PKDSEVAATGSEGKEL----TPRVNGYSFVDTPSPA 315 (414)
T ss_pred ccCcccccccccCCccccccccCCCCCCcCHHHHHHHHhcCCc-cCcccccccccccccc----CCCCCCccccCCCCCC
Confidence 4899999999995 4577878999999999999888 777777 6666655 9999999999999885
Q ss_pred -----CccccCC
Q psy11025 311 -----KSLEELK 317 (535)
Q Consensus 311 -----~sl~k~K 317 (535)
.+|+-|=
T Consensus 316 Pg~~~sPlmTWG 327 (414)
T PF09751_consen 316 PGVDESPLMTWG 327 (414)
T ss_pred CCCCCCCccccc
Confidence 5777783
No 2
>KOG2627|consensus
Probab=100.00 E-value=6.1e-64 Score=511.27 Aligned_cols=277 Identities=29% Similarity=0.411 Sum_probs=228.5
Q ss_pred ccccCCCCCcCChHHHHHHHHhhhhhccCCCcHHhhhhHHHHHHHhhcCHHHHHHHHHHhcC----CC--C-ccCCCCCC
Q psy11025 26 SIRQNAAPSYVSPRDAEQKIAEIIERDFFPDLEKLHAQNDFLDAMELNDVQKLRELYAKYSN----ST--P-YVDRCESS 98 (535)
Q Consensus 26 ~~r~k~~~~VLdEd~Y~~~L~~II~RDfFPdL~kl~~q~eyL~A~~s~D~~~i~~~~~~~~~----~~--~-~~~~~~~~ 98 (535)
+.+.|+++.|||||+||++|++||||||||||.|||+|+|||||++.||+.+|++|+.|+.. ++ + ..+.+..+
T Consensus 32 ~~~~k~k~rvL~Ee~YIEgl~kIIqrDyFPDl~KLrAq~dyLeAe~~~D~~qireiq~k~~~~~~~~t~~~~~~r~~~~s 111 (488)
T KOG2627|consen 32 KVQTKKKPRVLDEEKYIEGLSKIIQRDYFPDLEKLRAQKDYLEAEENGDFDQIREIQDKFLSYLIKKTSEDDPLRKTLTS 111 (488)
T ss_pred ccccccCcccCcHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhccccCCCCCcccCCCC
Confidence 44667789999999999999999999999999999999999999999999999999999862 21 1 11224556
Q ss_pred CCCCCCCCCcccccccCCCCCCCccc-ccCCCC---C---CCCCCCCCCChHHHhhhcCCccchhHHHHHHHHHHhhhhh
Q psy11025 99 PATFETPEHFTSLEEAGSADHEASVR-SQGSCS---S---KKSTSGKYQSLNEFLSTHTSEDNQSFEDIIEHAKKKHRIK 171 (535)
Q Consensus 99 p~~~~TP~~~~~~~~~~~~~~p~~~~-s~~~~~---~---~~~~~~~~~sLd~F~~kyTSEDN~SF~~il~~~n~k~~~k 171 (535)
++||++|...... +.+|+|.+.. +++-.+ . ...+.+.++|||.|++|||||||+||+|||+.+++|+++|
T Consensus 112 ~sT~E~~~~~~~~---~n~p~Prs~~~s~pfa~ee~dkedl~~d~~~~lSLd~fl~rYTSEDNaSFqEimE~~~~k~r~k 188 (488)
T KOG2627|consen 112 LSTFEIPKAQLDG---ENKPTPRSRSVSRPFAGEEVDKEDLDEDIDLNLSLDNFLRRYTSEDNASFQEIMEVASRKRREK 188 (488)
T ss_pred ccccccccccccc---cCCCCCCCccccccccccccccccccccchhhhhHHHHHHhhcccchhhHHHHHHHHHHHHHhh
Confidence 7788888765222 2345554421 111111 1 1114678999999999999999999999999999999999
Q ss_pred cccccccCCCCccchhhhhcCCchHhhhhhhcccCCcCccccCcCccCCccccCCCCCCCCHHHHHHHhcCCCceeccCC
Q psy11025 172 YPWLYCGEDEAPENTSRFLELPSMQEQIDQAKDKDRDRRIQTWKFVNKNSAMYTPDGVELTKDEQIEMARNRMSINHSGT 251 (535)
Q Consensus 172 ~awl~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~W~~~~~N~LMf~P~~~~~~~~~~~~~~~~~k~I~~~NT 251 (535)
|+|||.+|+++++|....+.+++++.|+++ ++.|..+++|+|+++|+|||+|+||+++. +..+++..+++|+|+||
T Consensus 189 ~~~ly~~Eke~~k~~~e~~~~~ai~~~~~~---~d~~~sietW~Y~akNslMY~Peg~~~t~-~e~q~a~r~~qi~~~nT 264 (488)
T KOG2627|consen 189 HAWLYGAEKEQPKQTIEALNLDAIKHQAWE---SDQPKSIETWNYTAKNSLMYTPEGVHSTP-TEAQLAVRLQQIKKNNT 264 (488)
T ss_pred hhhhhhhhhcchhhhhhhhhhhhhhhhhcc---CCCccccccccccccceeeecCCCCccch-HHHHHHHHHHhhhhccc
Confidence 999999999999998899999999999987 34499999999999999999999999988 67789999999999999
Q ss_pred CCCCCCCCccccHHHHHHHHhhhhhhhhcCCCCCCCCcccCCCCccccccccccccccc-----CccccC
Q psy11025 252 RLHVNPFDEQQSKEALHDLAKTQAISSLSGKIGVDGKEITLNSTPRNREAASTVLEKGA-----KSLEEL 316 (535)
Q Consensus 252 R~~~~p~~~~~~~~~~~~a~~~~~~~~~~g~~~~~g~e~~~~~~p~v~gy~fv~~~~~~-----~sl~k~ 316 (535)
||+..+++..+..-.|+. . ..++.+|.|++++..++.|++|||+||-+|+|+ -.++-|
T Consensus 265 Rfpd~~k~~~~d~~~i~a------~-~~~~~sg~d~~~~v~~e~~~~ngf~fvrtPSP~Pg~~~SP~mTW 327 (488)
T KOG2627|consen 265 RFPDKTKDSRPDSTEINA------D-VPQHLSGSDRDKYVESELPAANGFSFVRTPSPAPGVPESPNMTW 327 (488)
T ss_pred ccCCcccccccchhhhhc------c-ccccccCCcccccccccccccCCcccccCCCCCCCCCCCccccc
Confidence 999999987766333433 3 567789999999999999999999999999984 344666
No 3
>KOG1586|consensus
Probab=100.00 E-value=3e-36 Score=290.13 Aligned_cols=211 Identities=18% Similarity=0.171 Sum_probs=182.5
Q ss_pred cCCCCcccc---cccccccccccCccccCCHHHHHHHHHHHhc-------hHHHHHHHHHHHHHHHh--CHHHHHHHHHH
Q psy11025 291 TLNSTPRNR---EAASTVLEKGAKSLEELKPDAALTLYSRAAD-------VAHGEDNYKQAAEYISR--NREAASTVLEK 358 (535)
Q Consensus 291 ~~~~~p~v~---gy~fv~~~~~~~sl~k~K~D~AA~lYekAA~-------~~eAa~af~kAA~~y~~--~~~~AA~~l~~ 358 (535)
...+++|++ ||++||+. .|+|+|++||++||| |..||++|.+||+||.+ ++|+||++|++
T Consensus 8 ~k~AEkK~~~s~gF~lfgg~--------~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~Yve 79 (288)
T KOG1586|consen 8 MKKAEKKLNGSGGFLLFGGS--------NKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVE 79 (288)
T ss_pred HHHHHHhcccCCcccccCCC--------cchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 344556666 55556643 599999999999998 77899999999999976 78999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHhhHH--HHHHHHH
Q psy11025 359 GAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRV-KEFDKAADLIRQEIGYHQESEHL--LAIGRLA 435 (535)
Q Consensus 359 AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~-~~y~~Aie~ye~~~~~~~a~e~~--~~a~rl~ 435 (535)
|+|||++.+|++||+|+++|+++|+..|||++|+++...||+|||.. .++++||..||+++++|...+.. .+.|-++
T Consensus 80 A~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lK 159 (288)
T KOG1586|consen 80 AANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLK 159 (288)
T ss_pred HHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999985 99999999999999999988764 4456667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhccCCCCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHH
Q psy11025 436 VALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAE 515 (535)
Q Consensus 436 la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~ 515 (535)
||+...+|.+|.. |+.+|++++....+ ..+-+|++++++ |++||||||..|.|.++
T Consensus 160 vA~yaa~leqY~~--Ai~iyeqva~~s~~---------------------n~LLKys~Kdyf-lkAgLChl~~~D~v~a~ 215 (288)
T KOG1586|consen 160 VAQYAAQLEQYSK--AIDIYEQVARSSLD---------------------NNLLKYSAKDYF-LKAGLCHLCKADEVNAQ 215 (288)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHhcc---------------------chHHHhHHHHHH-HHHHHHhHhcccHHHHH
Confidence 7777888876666 99999998885433 122348999996 99999999999999999
Q ss_pred HHHHH----hcCCCCchhhhcc
Q psy11025 516 KAFKE----WGNCCEAPEINSH 533 (535)
Q Consensus 516 ~a~~~----~~~F~~s~E~~~~ 533 (535)
++|++ .|+|.+||||+-+
T Consensus 216 ~ALeky~~~dP~F~dsREckfl 237 (288)
T KOG1586|consen 216 RALEKYQELDPAFTDSRECKFL 237 (288)
T ss_pred HHHHHHHhcCCcccccHHHHHH
Confidence 99998 3999999999865
No 4
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.96 E-value=6.7e-29 Score=252.89 Aligned_cols=197 Identities=20% Similarity=0.283 Sum_probs=159.5
Q ss_pred CCHH--HHHHHHHHHhc-------hHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Q psy11025 316 LKPD--AALTLYSRAAD-------VAHGEDNYKQAAEYISR--NREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHG 384 (535)
Q Consensus 316 ~K~D--~AA~lYekAA~-------~~eAa~af~kAA~~y~~--~~~~AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~ 384 (535)
|+|| +|+++|++||+ |.+|+++|.+|++||.+ ++..||++|++|+++|++.++++|+++|++|+++|..
T Consensus 27 ~~~~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~ 106 (282)
T PF14938_consen 27 KKPDYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYRE 106 (282)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHh
Confidence 5555 99999999998 78999999999999976 5677999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccC
Q psy11025 385 EDNYKQAAEYISRAARMCVRV-KEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCE 463 (535)
Q Consensus 385 egr~~~Aa~~l~kaAel~e~~-~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~ 463 (535)
.|++++|++++.++|++|+.. +++++|+++|+++.++|...+....+..+.+.+..+....+++..|+.+|++++..|.
T Consensus 107 ~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l 186 (282)
T PF14938_consen 107 AGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCL 186 (282)
T ss_dssp CT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCC
T ss_pred cCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999998 9999999999999999998877665555544333334444566669999999877544
Q ss_pred CCCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHh----cCCCCchhhhccC
Q psy11025 464 APERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW----GNCCEAPEINSHM 534 (535)
Q Consensus 464 ~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~~----~~F~~s~E~~~~~ 534 (535)
+. + + ..|.+ ...+|++||||||+||.|+|+++++++ |+|.+|||+..+.
T Consensus 187 ~~------------~--l-------~~~~~-~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~ 239 (282)
T PF14938_consen 187 EN------------N--L-------LKYSA-KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLE 239 (282)
T ss_dssp CH------------C--T-------TGHHH-HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHH
T ss_pred cc------------c--c-------cchhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHH
Confidence 30 0 1 12543 444699999999999999999999983 9999999998753
No 5
>KOG1585|consensus
Probab=99.93 E-value=2.5e-25 Score=215.99 Aligned_cols=194 Identities=22% Similarity=0.234 Sum_probs=159.9
Q ss_pred cCccccCCHH--HHHHHHHHHhc-------hHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHhCC-HHHHHHHHHH
Q psy11025 310 AKSLEELKPD--AALTLYSRAAD-------VAHGEDNYKQAAEYISR--NREAASTVLEKGAKSLEELK-SDAALTLYSR 377 (535)
Q Consensus 310 ~~sl~k~K~D--~AA~lYekAA~-------~~eAa~af~kAA~~y~~--~~~~AA~~l~~AAk~~ek~~-~~eAie~y~k 377 (535)
+..+++|||| .|+.+|+|||+ +++|.+|+.+|++||++ +..+||++|+.|+-+.++.+ +.|++.+|++
T Consensus 17 a~t~~~wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eK 96 (308)
T KOG1585|consen 17 ALTLTRWKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEK 96 (308)
T ss_pred HHHhhccCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3457789999 89999999998 55777788888888875 56679999999999999987 8999999999
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHH------hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHH
Q psy11025 378 AADVAHGEDNYKQAAEYISRAARMCVR------VKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAA 451 (535)
Q Consensus 378 Aaely~~egr~~~Aa~~l~kaAel~e~------~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA 451 (535)
|+++|.+.|+++.|+..+.|+|++++. ++.|++|+.+++...+..++.+.+.+++++ +++|..++. |
T Consensus 97 As~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~-----lVrl~kf~E--a 169 (308)
T KOG1585|consen 97 ASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRV-----LVRLEKFTE--A 169 (308)
T ss_pred HHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhH-----hhhhHHhhH--H
Confidence 999999999999999999999999987 345555555555555555666667777666 778888888 5
Q ss_pred HHHHHHhhhccCCCCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH---hcCCCCch
Q psy11025 452 EKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE---WGNCCEAP 528 (535)
Q Consensus 452 ~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~---~~~F~~s~ 528 (535)
...+.+ +.........|..++++++.+||+||...|+|.|++++.+ ||+|++|+
T Consensus 170 a~a~lK-----------------------e~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~se 226 (308)
T KOG1585|consen 170 ATAFLK-----------------------EGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSE 226 (308)
T ss_pred HHHHHH-----------------------hhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChH
Confidence 466654 2233345566899999999999999999999999999998 89999999
Q ss_pred hhhcc
Q psy11025 529 EINSH 533 (535)
Q Consensus 529 E~~~~ 533 (535)
+++++
T Consensus 227 d~r~l 231 (308)
T KOG1585|consen 227 DSRSL 231 (308)
T ss_pred HHHHH
Confidence 99875
No 6
>KOG1586|consensus
Probab=99.91 E-value=2.2e-23 Score=201.41 Aligned_cols=181 Identities=22% Similarity=0.306 Sum_probs=147.1
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHh-CHHHHHHHHH--------------------HHHHHHHh--CCHHHHHHHHH
Q psy11025 320 AALTLYSRAADVAHGEDNYKQAAEYISR-NREAASTVLE--------------------KGAKSLEE--LKSDAALTLYS 376 (535)
Q Consensus 320 ~AA~lYekAA~~~eAa~af~kAA~~y~~-~~~~AA~~l~--------------------~AAk~~ek--~~~~eAie~y~ 376 (535)
.||+++.|+++-++|+.+|..|++||++ .+.+|++||+ +.|++||. .+.+.||.+|+
T Consensus 59 kaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE 138 (288)
T KOG1586|consen 59 KAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYE 138 (288)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHH
Confidence 3444444444456777777777777765 4555666666 44455554 35889999999
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH--------HhhHHHHHHHHHHHHHHHHHhcCCH
Q psy11025 377 RAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ--------ESEHLLAIGRLAVALVLVQLARGDT 448 (535)
Q Consensus 377 kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~--------a~e~~~~a~rl~la~il~~L~~~D~ 448 (535)
+|+++|.++...+.|++|+.|+|.+....++|.+||++||++++... ..+++++++ |||||..|.
T Consensus 139 ~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAg-------LChl~~~D~ 211 (288)
T KOG1586|consen 139 QAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAG-------LCHLCKADE 211 (288)
T ss_pred HHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHH-------HHhHhcccH
Confidence 99999999999999999999999999999999999999999987754 345566665 999999999
Q ss_pred HHHHHHHHHhhhccCCCCccccccccccccccccchhhh--------hhhHHHHHHHHHHHHHHHhccCC
Q psy11025 449 VAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQE--------SEHLLAIGRLAVALVLVQLARGD 510 (535)
Q Consensus 449 vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~--------~~~~~~~~~l~l~a~lc~L~~gD 510 (535)
|.+.+++++|.. .+|+|.+||||+|+.+| +.+++++ +.+|+.+.+|.-|.+.+.|..+-
T Consensus 212 v~a~~ALeky~~--~dP~F~dsREckflk~L-~~aieE~d~e~fte~vkefDsisrLD~W~ttiLlkiK~ 278 (288)
T KOG1586|consen 212 VNAQRALEKYQE--LDPAFTDSRECKFLKDL-LDAIEEQDIEKFTEVVKEFDSISRLDQWKTTILLKIKK 278 (288)
T ss_pred HHHHHHHHHHHh--cCCcccccHHHHHHHHH-HHHHhhhhHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 999999999877 79999999999999998 8875544 77899999999999999886543
No 7
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.87 E-value=2.4e-21 Score=197.46 Aligned_cols=188 Identities=24% Similarity=0.291 Sum_probs=149.3
Q ss_pred HHHHHHHHHHhc-------hHHHHHHHHHHHHHH-------------------HhC--HHHHHHHHHHHHHHHHhC--CH
Q psy11025 319 DAALTLYSRAAD-------VAHGEDNYKQAAEYI-------------------SRN--REAASTVLEKGAKSLEEL--KS 368 (535)
Q Consensus 319 D~AA~lYekAA~-------~~eAa~af~kAA~~y-------------------~~~--~~~AA~~l~~AAk~~ek~--~~ 368 (535)
++|+++|++|+. ...|+.+|.+|+.|| ... +..||+++.++|++|++. ++
T Consensus 52 ~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~ 131 (282)
T PF14938_consen 52 EKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDY 131 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--H
T ss_pred chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCH
Confidence 577777777775 234555555555554 332 345888999999999887 69
Q ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHhcCC
Q psy11025 369 DAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEH-LLAIGRLAVALVLVQLARGD 447 (535)
Q Consensus 369 ~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~-~~~a~rl~la~il~~L~~~D 447 (535)
++|+++|++|+++|..+|+...+++|+.++|.++.+.++|++|+++|++++..+..... -..+.+..+.++||+|+.||
T Consensus 132 e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D 211 (282)
T PF14938_consen 132 EKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGD 211 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999987755432 33566777888999999999
Q ss_pred HHHHHHHHHHhhhccCCCCccccccccccccccccchhhh--------hhhHHHHHHHHHHHHHHHhccC
Q psy11025 448 TVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQE--------SEHLLAIGRLAVALVLVQLARG 509 (535)
Q Consensus 448 ~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~--------~~~~~~~~~l~l~a~lc~L~~g 509 (535)
.|+|.++|++|.. .+|+|..|||+.++.+| +.+|+.+ +.+|+.+.++.-|.+-|+|...
T Consensus 212 ~v~A~~~~~~~~~--~~~~F~~s~E~~~~~~l-~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~~l~~~k 278 (282)
T PF14938_consen 212 YVAARKALERYCS--QDPSFASSREYKFLEDL-LEAYEEGDVEAFTEAVAEYDSISRLDNWKTKMLLKIK 278 (282)
T ss_dssp HHHHHHHHHHHGT--TSTTSTTSHHHHHHHHH-HHHHHTT-CCCHHHHCHHHTTSS---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--hCCCCCCcHHHHHHHHH-HHHHHhCCHHHHHHHHHHHcccCccHHHHHHHHHHHH
Confidence 9999999998655 56889999999999999 9987765 6689999999999998888643
No 8
>KOG1585|consensus
Probab=99.86 E-value=4e-21 Score=186.90 Aligned_cols=165 Identities=31% Similarity=0.393 Sum_probs=155.3
Q ss_pred HHHHHHHHHhc-------hHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHH
Q psy11025 320 AALTLYSRAAD-------VAHGEDNYKQAAEYISR--NREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQ 390 (535)
Q Consensus 320 ~AA~lYekAA~-------~~eAa~af~kAA~~y~~--~~~~AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~ 390 (535)
.||..||+||. |.++.+.|+||+++|.+ +++.||.++++||+++|..+|++|+++|++|+.+++.+||.++
T Consensus 69 hAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~m 148 (308)
T KOG1585|consen 69 HAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQM 148 (308)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHH
Confidence 57778888775 67899999999999976 6789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCcccc
Q psy11025 391 AAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCES 470 (535)
Q Consensus 391 Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~s 470 (535)
|.+.+.+++.++++.++|.+|...+.++..+...-+.+...++.+|++||++|...|+|.|.++|++ +|+.|.|+.|
T Consensus 149 a~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~---~~qip~f~~s 225 (308)
T KOG1585|consen 149 AFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRD---CSQIPAFLKS 225 (308)
T ss_pred HHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcc---hhcCccccCh
Confidence 9999999999999999999999999999999999999999999999999999999999999999986 7888999999
Q ss_pred ccccccccccccchhhhh
Q psy11025 471 GSSSFSFSLGKAGYHQES 488 (535)
Q Consensus 471 re~~~l~~L~l~ay~~~~ 488 (535)
.++.-+++| |.+|++++
T Consensus 226 ed~r~lenL-L~ayd~gD 242 (308)
T KOG1585|consen 226 EDSRSLENL-LTAYDEGD 242 (308)
T ss_pred HHHHHHHHH-HHHhccCC
Confidence 999999999 99998865
No 9
>KOG4626|consensus
Probab=97.73 E-value=0.00049 Score=75.74 Aligned_cols=60 Identities=13% Similarity=0.216 Sum_probs=30.4
Q ss_pred HHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy11025 356 LEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY 421 (535)
Q Consensus 356 l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~ 421 (535)
|-.-|+++++.. ..+|+.||.+|..+.-.- ++.+...|-++-..+.+++|+.+|+.+.+.
T Consensus 323 y~NlanALkd~G~V~ea~~cYnkaL~l~p~h------adam~NLgni~~E~~~~e~A~~ly~~al~v 383 (966)
T KOG4626|consen 323 YNNLANALKDKGSVTEAVDCYNKALRLCPNH------ADAMNNLGNIYREQGKIEEATRLYLKALEV 383 (966)
T ss_pred HhHHHHHHHhccchHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 344455555543 667777777776542211 223334444444445555555555554433
No 10
>KOG1840|consensus
Probab=97.72 E-value=0.0021 Score=70.93 Aligned_cols=140 Identities=20% Similarity=0.239 Sum_probs=100.2
Q ss_pred CCHHHHHHHHHHHhc-----------------------------hHHHHHHHHHHHHHHHh----CHHHHHHHHHHHHHH
Q psy11025 316 LKPDAALTLYSRAAD-----------------------------VAHGEDNYKQAAEYISR----NREAASTVLEKGAKS 362 (535)
Q Consensus 316 ~K~D~AA~lYekAA~-----------------------------~~eAa~af~kAA~~y~~----~~~~AA~~l~~AAk~ 362 (535)
-|+++|..+|++|=. +.+|..++++|.+++++ ++.+.+..|-..+-.
T Consensus 255 ~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~ 334 (508)
T KOG1840|consen 255 GKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAI 334 (508)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHH
Confidence 488899999998743 35788888888888865 344566666666666
Q ss_pred HHhCC-HHHHHHHHHHHHHHHhcC-CcHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh----HHHHHHHHH
Q psy11025 363 LEELK-SDAALTLYSRAADVAHGE-DNYK-QAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE----HLLAIGRLA 435 (535)
Q Consensus 363 ~ek~~-~~eAie~y~kAaely~~e-gr~~-~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e----~~~~a~rl~ 435 (535)
+...+ +++|+.+|++|..+|..- |... +-+.++.+.|++|-..|+|.+|.++|+++.......+ +.....-+-
T Consensus 335 ~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~ 414 (508)
T KOG1840|consen 335 LQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQ 414 (508)
T ss_pred HHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHH
Confidence 66655 999999999999998732 4445 8889999999999999999999999999987764421 221222222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q psy11025 436 VALVLVQLARGDTVAAEKAFKE 457 (535)
Q Consensus 436 la~il~~L~~~D~vaA~~~~e~ 457 (535)
++.-..++..+.. |...|++
T Consensus 415 la~~~~~~k~~~~--a~~l~~~ 434 (508)
T KOG1840|consen 415 LAEAYEELKKYEE--AEQLFEE 434 (508)
T ss_pred HHHHHHHhcccch--HHHHHHH
Confidence 2222345555554 6677776
No 11
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.52 E-value=0.0015 Score=52.87 Aligned_cols=72 Identities=17% Similarity=0.314 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy11025 352 ASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYK-QAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ 423 (535)
Q Consensus 352 AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~-~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~ 423 (535)
.+.+|..-|.+|...+ +++|+++|++|.+++...|... .-+.++..+|.++...|+|++|+++|+++.++++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 5677888888888765 9999999999999987777655 4699999999999999999999999999987765
No 12
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.50 E-value=0.018 Score=56.36 Aligned_cols=172 Identities=13% Similarity=-0.023 Sum_probs=111.8
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q psy11025 320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRA 398 (535)
Q Consensus 320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~ka 398 (535)
.-+..|.+.+++.+|...|.++...+..++. ...++..-+.++.+. ++++|+..|+++++.+....... ..+-..
T Consensus 38 ~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~---~a~~~~ 113 (235)
T TIGR03302 38 EEAKEALDSGDYTEAIKYFEALESRYPFSPY-AEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD---YAYYLR 113 (235)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCchh-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH---HHHHHH
Confidence 5666677778899999999998877654443 334455556776664 59999999999999987665432 233344
Q ss_pred HHHHHH--------hhhHHHHHHHHHHHHHHHHHhhH----HH-------HHHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q psy11025 399 ARMCVR--------VKEFDKAADLIRQEIGYHQESEH----LL-------AIGRLAVALVLVQLARGDTVAAEKAFKEWG 459 (535)
Q Consensus 399 Ael~e~--------~~~y~~Aie~ye~~~~~~~a~e~----~~-------~a~rl~la~il~~L~~~D~vaA~~~~e~~~ 459 (535)
+.++.. .+++++|++.|++..+.+-.... .. ...........+++..|+...|+..|+++.
T Consensus 114 g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al 193 (235)
T TIGR03302 114 GLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVV 193 (235)
T ss_pred HHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 444443 37899999999998766533211 11 111111223345677788888888888754
Q ss_pred hccCCCCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHh
Q psy11025 460 NCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 521 (535)
Q Consensus 460 ~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~~ 521 (535)
..+.+. +......+..|.++...||.-.|...++.+
T Consensus 194 ~~~p~~--------------------------~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 194 ENYPDT--------------------------PATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHCCCC--------------------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 422210 001223467789999999999999888764
No 13
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.31 E-value=0.012 Score=53.91 Aligned_cols=135 Identities=21% Similarity=0.225 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHH
Q psy11025 350 EAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLL 429 (535)
Q Consensus 350 ~~AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~ 429 (535)
..|+..|..+...+...++..+...+.+=+.-|. ....+......+|+++...|+|++|++.|+.+.... ....+.
T Consensus 9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~---~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~ 84 (145)
T PF09976_consen 9 EQASALYEQALQALQAGDPAKAEAAAEQLAKDYP---SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELK 84 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC---CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHH
Confidence 3477778888888777777776665554444333 334666777778888888899999999999987755 333455
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccC
Q psy11025 430 AIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARG 509 (535)
Q Consensus 430 ~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~g 509 (535)
..+++.++.+++.+ ++...|...++.+.. . . |.... ....|-+++..|
T Consensus 85 ~~a~l~LA~~~~~~--~~~d~Al~~L~~~~~----~-----------------~-------~~~~~--~~~~Gdi~~~~g 132 (145)
T PF09976_consen 85 PLARLRLARILLQQ--GQYDEALATLQQIPD----E-----------------A-------FKALA--AELLGDIYLAQG 132 (145)
T ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHhccC----c-----------------c-------hHHHH--HHHHHHHHHHCC
Confidence 55666666555544 555558777764211 0 1 11121 234588999999
Q ss_pred CHHHHHHHHHH
Q psy11025 510 DTVAAEKAFKE 520 (535)
Q Consensus 510 D~V~A~~a~~~ 520 (535)
|.-.|..+|+.
T Consensus 133 ~~~~A~~~y~~ 143 (145)
T PF09976_consen 133 DYDEARAAYQK 143 (145)
T ss_pred CHHHHHHHHHH
Confidence 99999998874
No 14
>KOG1840|consensus
Probab=97.29 E-value=0.024 Score=62.77 Aligned_cols=177 Identities=16% Similarity=0.191 Sum_probs=124.4
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHh---CHHH-HHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcC-Cc-HHHHH
Q psy11025 320 AALTLYSRAADVAHGEDNYKQAAEYISR---NREA-ASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGE-DN-YKQAA 392 (535)
Q Consensus 320 ~AA~lYekAA~~~eAa~af~kAA~~y~~---~~~~-AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~e-gr-~~~Aa 392 (535)
..+..|...+.+++|...|.+|....++ ..+. =+.++...|.+|-..+ +.+|+.+|++|..++... |. .-.-+
T Consensus 204 ~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va 283 (508)
T KOG1840|consen 204 NLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVA 283 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 3788999999999999999999988654 2222 3455557889998876 999999999999997633 32 34556
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh---hHHHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCcc
Q psy11025 393 EYISRAARMCVRVKEFDKAADLIRQEIGYHQES---EHLLAIG-RLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERC 468 (535)
Q Consensus 393 ~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~---e~~~~a~-rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~ 468 (535)
..+.++|.+|...|+|.+|-.+|+++.+++... .....+. -.-++++.+....++. |...|.+-
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Ee--a~~l~q~a---------- 351 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEE--AKKLLQKA---------- 351 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhH--HHHHHHHH----------
Confidence 789999999999999999999999999988762 1111222 2223344445444444 77777651
Q ss_pred ccccccccccccccchhhhhhhHH-HHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025 469 ESGSSSFSFSLGKAGYHQESEHLL-AIGRLAVALVLVQLARGDTVAAEKAFKE 520 (535)
Q Consensus 469 ~sre~~~l~~L~l~ay~~~~~~~~-~~~~l~l~a~lc~L~~gD~V~A~~a~~~ 520 (535)
++-|....++.+ .+.+..-..+.|++.+|-+-.|...+++
T Consensus 352 ------------l~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ 392 (508)
T KOG1840|consen 352 ------------LKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKK 392 (508)
T ss_pred ------------HHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 111212222333 4455556778999999999999988877
No 15
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.18 E-value=0.015 Score=54.64 Aligned_cols=125 Identities=17% Similarity=0.125 Sum_probs=79.2
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q psy11025 320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRA 398 (535)
Q Consensus 320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~ka 398 (535)
.-+.+|.+.+++.+|...|.++.... +.. +..+...+.++... ++++|+++|.++.++..... ..+...
T Consensus 36 ~la~~~~~~~~~~~A~~~~~~~l~~~---p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~~ 105 (234)
T TIGR02521 36 QLALGYLEQGDLEVAKENLDKALEHD---PDD-YLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG------DVLNNY 105 (234)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC---ccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHH
Confidence 34556666677888888888886543 222 23444556666554 58999999999988754432 355667
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q psy11025 399 ARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 458 (535)
Q Consensus 399 Ael~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~ 458 (535)
+.++...++|++|+++|++..+...... ........+.+....|+...|...|++.
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 161 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQ----PARSLENAGLCALKAGDFDKAEKYLTRA 161 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcccccc----chHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7788888999999999988865321110 0111111234556667777788888763
No 16
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.98 E-value=0.039 Score=50.43 Aligned_cols=128 Identities=23% Similarity=0.180 Sum_probs=80.7
Q ss_pred HHHHHHHHHHhc------hHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcCCcHHHH
Q psy11025 319 DAALTLYSRAAD------VAHGEDNYKQAAEYISRNREAASTVLEKGAKSL-EELKSDAALTLYSRAADVAHGEDNYKQA 391 (535)
Q Consensus 319 D~AA~lYekAA~------~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~-ek~~~~eAie~y~kAaely~~egr~~~A 391 (535)
+.|...|+++-. +.++...+.+-..-|..++ -+..+....|+++ ...++++|++.|+.+++.. ......
T Consensus 9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~-ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---~d~~l~ 84 (145)
T PF09976_consen 9 EQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSP-YAALAALQLAKAAYEQGDYDEAKAALEKALANA---PDPELK 84 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCHHHH
Confidence 367777776543 4444444444333332232 2444555555555 4566999999999998854 224556
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy11025 392 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE 457 (535)
Q Consensus 392 a~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~ 457 (535)
.....++|.++...++|++|+.+++...... +....... .+-+.+..||...|+.+|++
T Consensus 85 ~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~-----~~~~~~~~--~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 85 PLARLRLARILLQQGQYDEALATLQQIPDEA-----FKALAAEL--LGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhccCcc-----hHHHHHHH--HHHHHHHCCCHHHHHHHHHH
Confidence 6677789999999999999999997642211 11111111 23456678999889999974
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=96.94 E-value=0.063 Score=56.28 Aligned_cols=129 Identities=13% Similarity=0.054 Sum_probs=79.1
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q psy11025 321 ALTLYSRAADVAHGEDNYKQAAEYISRNRE-AASTVLEKGAKSLEE-LKSDAALTLYSRAADVAHGEDNYKQAAEYISRA 398 (535)
Q Consensus 321 AA~lYekAA~~~eAa~af~kAA~~y~~~~~-~AA~~l~~AAk~~ek-~~~~eAie~y~kAaely~~egr~~~Aa~~l~ka 398 (535)
-+.+|.+.+++.+|.+.|.++......... .-+..+...+.++.+ .++++|+.+|.++.++.... ...+...
T Consensus 147 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l 220 (389)
T PRK11788 147 LLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQC------VRASILL 220 (389)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC------HHHHHHH
Confidence 455677777788888888777654322222 123344455555544 45899999999998875332 2355667
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025 399 ARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGN 460 (535)
Q Consensus 399 Ael~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~ 460 (535)
|.++...+++++|+++|++.....-. ... .....++.++...|+...|...|++...
T Consensus 221 a~~~~~~g~~~~A~~~~~~~~~~~p~--~~~---~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 221 GDLALAQGDYAAAIEALERVEEQDPE--YLS---EVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHChh--hHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888899999999999988654211 100 1111112334456777778888876433
No 18
>KOG4626|consensus
Probab=96.94 E-value=0.015 Score=64.50 Aligned_cols=138 Identities=22% Similarity=0.201 Sum_probs=90.1
Q ss_pred CHHHHHHHHHHHhc---------------------hHHHHHHHHHHHHHHH--------------h--CHHHHHHHHHHH
Q psy11025 317 KPDAALTLYSRAAD---------------------VAHGEDNYKQAAEYIS--------------R--NREAASTVLEKG 359 (535)
Q Consensus 317 K~D~AA~lYekAA~---------------------~~eAa~af~kAA~~y~--------------~--~~~~AA~~l~~A 359 (535)
.+|.|..||.+|.+ .+-|.++|++|.+..- + +-.+|..||.+|
T Consensus 267 ~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 267 IFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred cchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 56899999999985 5668888888765431 1 223455555544
Q ss_pred --------------HHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-
Q psy11025 360 --------------AKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ- 423 (535)
Q Consensus 360 --------------Ak~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~- 423 (535)
+++|.+.. .++|+.+|++|.++|.+- +......|-+|-+.|++.+|+..|.++.+.--
T Consensus 347 L~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~------aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~ 420 (966)
T KOG4626|consen 347 LRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEF------AAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT 420 (966)
T ss_pred HHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhh------hhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch
Confidence 45555544 899999999999998654 23456778888888999999999988865431
Q ss_pred HhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCccc
Q psy11025 424 ESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCE 469 (535)
Q Consensus 424 a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~ 469 (535)
-.+.+.+.| ...-..||..+|+.+|.+-.. -+|+|+.
T Consensus 421 fAda~~NmG-------nt~ke~g~v~~A~q~y~rAI~--~nPt~Ae 457 (966)
T KOG4626|consen 421 FADALSNMG-------NTYKEMGDVSAAIQCYTRAIQ--INPTFAE 457 (966)
T ss_pred HHHHHHhcc-------hHHHHhhhHHHHHHHHHHHHh--cCcHHHH
Confidence 123333333 223346777777777776322 2455533
No 19
>KOG2003|consensus
Probab=96.79 E-value=0.079 Score=56.99 Aligned_cols=139 Identities=17% Similarity=0.136 Sum_probs=81.1
Q ss_pred CCHHHHHHHHHHHhc----h----------HHHHHHHHHHHHHHHhCHH---HHHHHHHHHHHHHHhC-CHHHHHHHHHH
Q psy11025 316 LKPDAALTLYSRAAD----V----------AHGEDNYKQAAEYISRNRE---AASTVLEKGAKSLEEL-KSDAALTLYSR 377 (535)
Q Consensus 316 ~K~D~AA~lYekAA~----~----------~eAa~af~kAA~~y~~~~~---~AA~~l~~AAk~~ek~-~~~eAie~y~k 377 (535)
-.+|.|++.|..|=+ | .++...+.+|-+|+.+..- --+..|++.|++||-+ +|.+||++|.+
T Consensus 504 gd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 356789999988755 1 2455555666666654221 2477899999999986 59999999998
Q ss_pred HHH--------------HHhcCCcHHHHHHHHHHH--------------HHHHHHhhhHHHHHHHHHHHHHHHHHhhHHH
Q psy11025 378 AAD--------------VAHGEDNYKQAAEYISRA--------------ARMCVRVKEFDKAADLIRQEIGYHQESEHLL 429 (535)
Q Consensus 378 Aae--------------ly~~egr~~~Aa~~l~ka--------------Ael~e~~~~y~~Aie~ye~~~~~~~a~e~~~ 429 (535)
|.. +|..+|..++|-+|+-.- |..|..-+-.++||.+||+++-. ..
T Consensus 584 ~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaali------qp 657 (840)
T KOG2003|consen 584 ANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI------QP 657 (840)
T ss_pred hcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc------Cc
Confidence 865 455555555555554221 22222233444555555554211 12
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025 430 AIGRLAVALVLVQLARGDTVAAEKAFKEWGN 460 (535)
Q Consensus 430 ~a~rl~la~il~~L~~~D~vaA~~~~e~~~~ 460 (535)
+..+|-+-...|.-..|.+..|-..|.++.+
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 2234444333455556777667666666444
No 20
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=96.69 E-value=0.057 Score=56.66 Aligned_cols=98 Identities=22% Similarity=0.204 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy11025 355 VLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGR 433 (535)
Q Consensus 355 ~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~r 433 (535)
.+...+.+|... ++++|..+|.++.+. .. .....+...+.++...++|++|++.|++........... ....
T Consensus 109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~---~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ 181 (389)
T PRK11788 109 ALQELGQDYLKAGLLDRAEELFLQLVDE---GD---FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV-EIAH 181 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcC---Cc---chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH-HHHH
Confidence 444555555543 367777777766543 11 122345556667777888888888888765543211110 1111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhh
Q psy11025 434 LAVALVLVQLARGDTVAAEKAFKEWG 459 (535)
Q Consensus 434 l~la~il~~L~~~D~vaA~~~~e~~~ 459 (535)
+.+..+.+.+..++...|...|++..
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al 207 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKAL 207 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 12222344555677777877777643
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=96.63 E-value=0.07 Score=60.42 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=17.0
Q ss_pred HHHHHHHhccCCHHHHHHHHHH
Q psy11025 499 VALVLVQLARGDTVAAEKAFKE 520 (535)
Q Consensus 499 l~a~lc~L~~gD~V~A~~a~~~ 520 (535)
...+-+++..|+...|-..|++
T Consensus 546 ~~la~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 546 ATMAQLLLQQGDVDEALKLFER 567 (615)
T ss_pred HHHHHHHHHccCHHHHHHHHHH
Confidence 4557788888888888887776
No 22
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.62 E-value=0.13 Score=52.89 Aligned_cols=182 Identities=15% Similarity=0.029 Sum_probs=95.7
Q ss_pred HHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q psy11025 322 LTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAAR 400 (535)
Q Consensus 322 A~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAe 400 (535)
+.+|.+.|.+.+|...|.+|....-+. +.+|...+..+... ++++|++.|.+|+++--.. ...+...|.
T Consensus 71 g~~~~~~g~~~~A~~~~~~Al~l~P~~----~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~------~~a~~~lg~ 140 (296)
T PRK11189 71 GVLYDSLGLRALARNDFSQALALRPDM----ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTY------NYAYLNRGI 140 (296)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHH
Confidence 445666667778888888877654222 23455556666654 4888998898888874433 123455666
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCcccccccccccccc
Q psy11025 401 MCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLG 480 (535)
Q Consensus 401 l~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~ 480 (535)
++...|+|++|++.|++..+..-.... . . ++. .+ ....++...|...|++...-...+...-..-...+.++.
T Consensus 141 ~l~~~g~~~eA~~~~~~al~~~P~~~~-~-~--~~~--~l-~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~ 213 (296)
T PRK11189 141 ALYYGGRYELAQDDLLAFYQDDPNDPY-R-A--LWL--YL-AESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKIS 213 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHH-H-H--HHH--HH-HHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCC
Confidence 666678888888888887654322211 0 1 000 01 122445555666665422110000000000000000000
Q ss_pred --------ccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025 481 --------KAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE 520 (535)
Q Consensus 481 --------l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~ 520 (535)
+..+..............+..|.++...||...|...|++
T Consensus 214 ~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~ 261 (296)
T PRK11189 214 EETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKL 261 (296)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 0111111111111223456779999999999999999987
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=96.54 E-value=0.056 Score=61.21 Aligned_cols=120 Identities=14% Similarity=0.120 Sum_probs=70.1
Q ss_pred HHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy11025 360 AKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVAL 438 (535)
Q Consensus 360 Ak~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~ 438 (535)
+.++... ++++|+.+|.+|+++.... ..++...|.++...|+|++|+..|+++.+..-..... ...+
T Consensus 372 a~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~----~~~l-- 439 (615)
T TIGR00990 372 ASMNLELGDPDKAEEDFDKALKLNSED------PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFS----HIQL-- 439 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHH----HHHH--
Confidence 3334333 4777777777777663222 2355566777777788888888888876554322111 1111
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhccCCCCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHH
Q psy11025 439 VLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAF 518 (535)
Q Consensus 439 il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~ 518 (535)
..++...|+...|...|++..... +.........|.+++..|+...|...|
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~~-----------------------------P~~~~~~~~lg~~~~~~g~~~~A~~~~ 490 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKNF-----------------------------PEAPDVYNYYGELLLDQNKFDEAIEKF 490 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-----------------------------CCChHHHHHHHHHHHHccCHHHHHHHH
Confidence 234445667666777777532210 001112244578888899999998888
Q ss_pred HH
Q psy11025 519 KE 520 (535)
Q Consensus 519 ~~ 520 (535)
++
T Consensus 491 ~~ 492 (615)
T TIGR00990 491 DT 492 (615)
T ss_pred HH
Confidence 77
No 24
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=96.53 E-value=0.19 Score=47.16 Aligned_cols=156 Identities=17% Similarity=0.220 Sum_probs=93.8
Q ss_pred HHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q psy11025 322 LTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAAR 400 (535)
Q Consensus 322 A~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAe 400 (535)
+.+|...+++.+|.+.|.++........ ..+...+.++... ++++|+++|.++....... .-...+..+|.
T Consensus 72 a~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~~l~~ 143 (234)
T TIGR02521 72 ALYYQQLGELEKAEDSFRRALTLNPNNG----DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYP----QPARSLENAGL 143 (234)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcccHHHHHHHHHHHHhccccc----cchHHHHHHHH
Confidence 4445555556666666666655432222 2344445555544 5899999999998753211 12334566788
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCcccccccccccccc
Q psy11025 401 MCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLG 480 (535)
Q Consensus 401 l~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~ 480 (535)
++...+++++|.++|++......... . .......+....++...|...++++.....
T Consensus 144 ~~~~~g~~~~A~~~~~~~~~~~~~~~---~---~~~~la~~~~~~~~~~~A~~~~~~~~~~~~----------------- 200 (234)
T TIGR02521 144 CALKAGDFDKAEKYLTRALQIDPQRP---E---SLLELAELYYLRGQYKDARAYLERYQQTYN----------------- 200 (234)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcCCh---H---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------
Confidence 88889999999999999876543211 1 111122445567888889888887433100
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025 481 KAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE 520 (535)
Q Consensus 481 l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~ 520 (535)
..... .+..+.++...||...|...++.
T Consensus 201 -----------~~~~~-~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 201 -----------QTAES-LWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred -----------CCHHH-HHHHHHHHHHHhhHHHHHHHHHH
Confidence 00111 12346677788999998877665
No 25
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=96.45 E-value=0.071 Score=52.14 Aligned_cols=135 Identities=13% Similarity=0.020 Sum_probs=83.2
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHHHhcCCcHHHH
Q psy11025 321 ALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEE---------LKSDAALTLYSRAADVAHGEDNYKQA 391 (535)
Q Consensus 321 AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek---------~~~~eAie~y~kAaely~~egr~~~A 391 (535)
-+.+|.+.+++.+|...|.++...+-+++. +..++...+.++-+ .++++|++.|.+++..+-.......+
T Consensus 76 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a 154 (235)
T TIGR03302 76 LAYAYYKSGDYAEAIAAADRFIRLHPNHPD-ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDA 154 (235)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHCcCCCc-hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHH
Confidence 345566666677777777777665533322 22234444444433 23788999999998887766443332
Q ss_pred HH-----------HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q psy11025 392 AE-----------YISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWG 459 (535)
Q Consensus 392 a~-----------~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~ 459 (535)
-. ....+|.++...|+|.+|+..|++..+.+........+. +. .+.++...|+...|...++..+
T Consensus 155 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~-~~--l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 155 KKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEAL-AR--LVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHH-HH--HHHHHHHcCCHHHHHHHHHHHH
Confidence 21 123567788888999999999999987775443222221 11 2344556677777888887643
No 26
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.44 E-value=0.067 Score=53.17 Aligned_cols=198 Identities=17% Similarity=0.135 Sum_probs=119.9
Q ss_pred CHHHHHHHHHHHh-------chHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcH
Q psy11025 317 KPDAALTLYSRAA-------DVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNY 388 (535)
Q Consensus 317 K~D~AA~lYekAA-------~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~ 388 (535)
+..+|++.+.+-| ++..|-+.+++|-..= |...-.++.. |.+|.+. .++.|-+.|++|+.+-...|
T Consensus 30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~D---Ps~~~a~~~~-A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G-- 103 (250)
T COG3063 30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHD---PSYYLAHLVR-AHYYQKLGENDLADESYRKALSLAPNNG-- 103 (250)
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHH-HHHHHHcCChhhHHHHHHHHHhcCCCcc--
Confidence 4457777655544 5677778888876542 2222222333 4566655 48999999999999988776
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCC
Q psy11025 389 KQAAEYISRAARMCVRVKEFDKAADLIRQEIGY---HQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAP 465 (535)
Q Consensus 389 ~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~---~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~ 465 (535)
+++.+.+-+++..|.|++|...|+++... .+-.+.+.+.+ +|.|..|+...|...|++--. .++
T Consensus 104 ----dVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G-------~Cal~~gq~~~A~~~l~raL~--~dp 170 (250)
T COG3063 104 ----DVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLG-------LCALKAGQFDQAEEYLKRALE--LDP 170 (250)
T ss_pred ----chhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhH-------HHHhhcCCchhHHHHHHHHHH--hCc
Confidence 48889999999999999999999998533 33345566665 888888888888888887222 466
Q ss_pred Cccccccccccccccccchhhhh---hhHHH---HHHHHHHHHH-HHhccCCHHHHHHHHHHh-cCCCCchhhhcc
Q psy11025 466 ERCESGSSSFSFSLGKAGYHQES---EHLLA---IGRLAVALVL-VQLARGDTVAAEKAFKEW-GNCCEAPEINSH 533 (535)
Q Consensus 466 ~f~~sre~~~l~~L~l~ay~~~~---~~~~~---~~~l~l~a~l-c~L~~gD~V~A~~a~~~~-~~F~~s~E~~~~ 533 (535)
.|..++..++-..++...|.... +.|.. -..-+||.+| +-=..||.-.+.+-=..+ -.|.+|.|+++.
T Consensus 171 ~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~f 246 (250)
T COG3063 171 QFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQTF 246 (250)
T ss_pred CCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHhH
Confidence 66555544433222111121110 00000 1111233332 122236665554433334 789999998864
No 27
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.44 E-value=0.087 Score=60.07 Aligned_cols=26 Identities=23% Similarity=0.180 Sum_probs=14.6
Q ss_pred HHHHHHHHHhC-CHHHHHHHHHHHHHH
Q psy11025 356 LEKGAKSLEEL-KSDAALTLYSRAADV 381 (535)
Q Consensus 356 l~~AAk~~ek~-~~~eAie~y~kAael 381 (535)
+...+.++... ++++|+.+|+++..+
T Consensus 638 ~~~l~~~~~~~~~~~~A~~~~~~~~~~ 664 (899)
T TIGR02917 638 LLLLADAYAVMKNYAKAITSLKRALEL 664 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 33444445443 367777777766554
No 28
>KOG1155|consensus
Probab=96.42 E-value=0.041 Score=59.38 Aligned_cols=65 Identities=20% Similarity=0.293 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy11025 353 STVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ 423 (535)
Q Consensus 353 A~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~ 423 (535)
...++--++||++.+ +++|+.||.+|+.+=..+| ..+.++|+++++.+++++|+.+|++-.+-..
T Consensus 432 sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~------~~l~~LakLye~l~d~~eAa~~yek~v~~~~ 497 (559)
T KOG1155|consen 432 SRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEG------SALVRLAKLYEELKDLNEAAQYYEKYVEVSE 497 (559)
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHhccccch------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 345666789999987 9999999999998755543 4789999999999999999999999887653
No 29
>KOG3616|consensus
Probab=96.39 E-value=0.015 Score=65.31 Aligned_cols=61 Identities=16% Similarity=0.218 Sum_probs=40.2
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy11025 377 RAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVA 437 (535)
Q Consensus 377 kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la 437 (535)
+|+.+....-....+..+|..+|+-|...++|+.|-++|-+.+..-.+...+.++++|.-+
T Consensus 750 kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 750 KAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred hhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHH
Confidence 4444444333345677788888888887788888877777776666666666666666543
No 30
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.38 E-value=0.039 Score=56.17 Aligned_cols=106 Identities=11% Similarity=0.021 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Q psy11025 318 PDAALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYIS 396 (535)
Q Consensus 318 ~D~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~ 396 (535)
|+.|..++.+.+++.+|...|.+....|-+++. +.+++...|.+|-.. ++++|+..|.+.++.|-+. ..+.+.+.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~-a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s---~~~~dAl~ 221 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY-QPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS---PKAADAMF 221 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---cchhHHHH
Confidence 456777766668899999999998887755433 455667777777654 5999999999999999877 45667788
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH
Q psy11025 397 RAARMCVRVKEFDKAADLIRQEIGYHQESEH 427 (535)
Q Consensus 397 kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~ 427 (535)
++|.++...+++.+|+.+|++..+.|-....
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 8999999999999999999999877755443
No 31
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.34 E-value=0.11 Score=50.48 Aligned_cols=159 Identities=16% Similarity=0.082 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHH
Q psy11025 352 ASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAI 431 (535)
Q Consensus 352 AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a 431 (535)
+-..|..|-..+.+.+..+|++.|++-...|-... .+.+.+..+|..+-+.++|.+|+..|++..+.+-.......+
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~---~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A 81 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSP---YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYA 81 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTST---THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhH
Confidence 55678888889999899999999999999998874 455566788888888999999999999998887543322222
Q ss_pred HHHHHHHHHHHHh--------cCCHH---HHHHHHHHhhhccCCCCccccccccccccccccchhhhhhhHHHHHHHHHH
Q psy11025 432 GRLAVALVLVQLA--------RGDTV---AAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVA 500 (535)
Q Consensus 432 ~rl~la~il~~L~--------~~D~v---aA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~ 500 (535)
. ..+ ++|+.. ..|.. .|...|+++...-++-.+ ..-.... +.. -...+..-.+.
T Consensus 82 ~-Y~~--g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y-----~~~A~~~-l~~------l~~~la~~e~~ 146 (203)
T PF13525_consen 82 L-YML--GLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEY-----AEEAKKR-LAE------LRNRLAEHELY 146 (203)
T ss_dssp H-HHH--HHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTT-----HHHHHHH-HHH------HHHHHHHHHHH
T ss_pred H-HHH--HHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchH-----HHHHHHH-HHH------HHHHHHHHHHH
Confidence 1 111 112111 22332 255555554442222111 1101000 111 13344444578
Q ss_pred HHHHHhccCCHHHHHHHHHH-hcCCCCch
Q psy11025 501 LVLVQLARGDTVAAEKAFKE-WGNCCEAP 528 (535)
Q Consensus 501 a~lc~L~~gD~V~A~~a~~~-~~~F~~s~ 528 (535)
.+-.++.+|.+++|-+.++. +-.|.+|.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~ 175 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTP 175 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCc
Confidence 88999999999999999887 34444443
No 32
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=96.23 E-value=0.18 Score=60.34 Aligned_cols=23 Identities=17% Similarity=0.086 Sum_probs=20.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHH
Q psy11025 498 AVALVLVQLARGDTVAAEKAFKE 520 (535)
Q Consensus 498 ~l~a~lc~L~~gD~V~A~~a~~~ 520 (535)
....+++++..||...|...+++
T Consensus 680 ~~nLA~al~~lGd~~eA~~~l~~ 702 (987)
T PRK09782 680 IRQLAYVNQRLDDMAATQHYARL 702 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH
Confidence 46789999999999999999987
No 33
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.22 E-value=0.27 Score=56.11 Aligned_cols=54 Identities=20% Similarity=0.320 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHH--------------HHHhcCCcHHHHHHHHHHHH--------------HHHHHhhhHHHHHHHHHHHH
Q psy11025 368 SDAALTLYSRAA--------------DVAHGEDNYKQAAEYISRAA--------------RMCVRVKEFDKAADLIRQEI 419 (535)
Q Consensus 368 ~~eAie~y~kAa--------------ely~~egr~~~Aa~~l~kaA--------------el~e~~~~y~~Aie~ye~~~ 419 (535)
.++|+.+|.++. .+|...|++..|..++.++. .++...++|++|++.|++..
T Consensus 549 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 628 (899)
T TIGR02917 549 EEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLL 628 (899)
T ss_pred HHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 556666665552 23444555555555554443 33444567777777776664
Q ss_pred HH
Q psy11025 420 GY 421 (535)
Q Consensus 420 ~~ 421 (535)
+.
T Consensus 629 ~~ 630 (899)
T TIGR02917 629 AL 630 (899)
T ss_pred Hh
Confidence 43
No 34
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.15 E-value=0.048 Score=42.50 Aligned_cols=88 Identities=17% Similarity=0.224 Sum_probs=49.1
Q ss_pred HHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q psy11025 322 LTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAAR 400 (535)
Q Consensus 322 A~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAe 400 (535)
+..|...+++.+|...|.++.......+ ..+...+.++... ++++|+++|.+++.+..... ..+..+|.
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~~ 76 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALELDPDNA----DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA------KAYYNLGL 76 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHhcCCccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch------hHHHHHHH
Confidence 3344445556666666666655432222 2344445555443 36677777777766544432 45556666
Q ss_pred HHHHhhhHHHHHHHHHHHH
Q psy11025 401 MCVRVKEFDKAADLIRQEI 419 (535)
Q Consensus 401 l~e~~~~y~~Aie~ye~~~ 419 (535)
++...+++++|.+.+++..
T Consensus 77 ~~~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 77 AYYKLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHHHHhHHHHHHHHHHHH
Confidence 6666667777776665543
No 35
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.12 E-value=0.094 Score=63.93 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=16.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHH
Q psy11025 499 VALVLVQLARGDTVAAEKAFKE 520 (535)
Q Consensus 499 l~a~lc~L~~gD~V~A~~a~~~ 520 (535)
...+.++...|+...|...+++
T Consensus 675 ~~la~~~~~~g~~~eA~~~~~~ 696 (1157)
T PRK11447 675 RRVALAWAALGDTAAAQRTFNR 696 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHH
Confidence 3456677788888888888877
No 36
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.06 E-value=0.06 Score=46.01 Aligned_cols=98 Identities=13% Similarity=0.045 Sum_probs=52.9
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q psy11025 321 ALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAA 399 (535)
Q Consensus 321 AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaA 399 (535)
.+..+.+-+++.+|.+.|.++...+-+++. ...++...+.++.+. ++++|+.+|+++...+.+. ......+...|
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~~~~~ 83 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKKYPKSTY-APNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS---PKAPDALLKLG 83 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccc-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC---CcccHHHHHHH
Confidence 344445555666666666666544322211 233444455555543 3666777777666655332 11233455666
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHH
Q psy11025 400 RMCVRVKEFDKAADLIRQEIGYH 422 (535)
Q Consensus 400 el~e~~~~y~~Aie~ye~~~~~~ 422 (535)
.++...+++.+|+..|++..+.+
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 66666667777777766655443
No 37
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.04 E-value=0.18 Score=50.58 Aligned_cols=161 Identities=11% Similarity=0.033 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHH
Q psy11025 351 AASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLA 430 (535)
Q Consensus 351 ~AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~ 430 (535)
.+...|.+|-+.+++.+.++|++.|++....|-.. ..+.+....+|..+-+.++|++|+..|++..+.+-......-
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s---~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~ 107 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG---PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY 107 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHH
Confidence 35667888888888888999999999998888766 455555778888888889999999999998888754432222
Q ss_pred HHHHHHHHHHHHHh---------------cCCHHHHH---HHHHHhhhccCCCCccccccccccccccccchhhhhhhHH
Q psy11025 431 IGRLAVALVLVQLA---------------RGDTVAAE---KAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLL 492 (535)
Q Consensus 431 a~rl~la~il~~L~---------------~~D~vaA~---~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~ 492 (535)
+.-. .++|+.. .-|...+. +.|+++.+.-++ |....-.... +..+ ..
T Consensus 108 a~Y~---~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~-----S~ya~~A~~r-l~~l------~~ 172 (243)
T PRK10866 108 VLYM---RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPN-----SQYTTDATKR-LVFL------KD 172 (243)
T ss_pred HHHH---HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcC-----ChhHHHHHHH-HHHH------HH
Confidence 2111 0122211 12443333 444443332222 1111101110 1111 23
Q ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHH----hcCCCCchh
Q psy11025 493 AIGRLAVALVLVQLARGDTVAAEKAFKE----WGNCCEAPE 529 (535)
Q Consensus 493 ~~~~l~l~a~lc~L~~gD~V~A~~a~~~----~~~F~~s~E 529 (535)
.+.+..+..+-.++-+|.+++|-+.++. +|+-...+|
T Consensus 173 ~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~e 213 (243)
T PRK10866 173 RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRD 213 (243)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHH
Confidence 3444456777788889999999988887 355444444
No 38
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.02 E-value=0.29 Score=46.79 Aligned_cols=127 Identities=15% Similarity=0.133 Sum_probs=87.1
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q psy11025 374 LYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEK 453 (535)
Q Consensus 374 ~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~ 453 (535)
-++.-.+-+....--..-.+.+...|++|.+.|+++.|++.|.+..+.....+.....+ +..|-+.+..+|...+..
T Consensus 18 ~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~---l~~irv~i~~~d~~~v~~ 94 (177)
T PF10602_consen 18 KLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMC---LNVIRVAIFFGDWSHVEK 94 (177)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHH---HHHHHHHHHhCCHHHHHH
Confidence 33333444443333456667888999999999999999999999877765554433333 223344556678766666
Q ss_pred HHHHhhhccCCCCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH-hcCCCC
Q psy11025 454 AFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE-WGNCCE 526 (535)
Q Consensus 454 ~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~-~~~F~~ 526 (535)
.+++.. ...+..+++....++-...||.+|+.+|+-.|-+.|=+ .++|..
T Consensus 95 ~i~ka~-----------------------~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~~ 145 (177)
T PF10602_consen 95 YIEKAE-----------------------SLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTFTS 145 (177)
T ss_pred HHHHHH-----------------------HHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCCCC
Confidence 666522 22222344777888888899999999999999999877 488864
No 39
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=96.01 E-value=0.27 Score=56.47 Aligned_cols=19 Identities=11% Similarity=0.144 Sum_probs=10.3
Q ss_pred HHHHhhhHHHHHHHHHHHH
Q psy11025 401 MCVRVKEFDKAADLIRQEI 419 (535)
Q Consensus 401 l~e~~~~y~~Aie~ye~~~ 419 (535)
++...+++++|+..|++..
T Consensus 221 ~l~~~g~~~eA~~~~~~al 239 (656)
T PRK15174 221 TLCAVGKYQEAIQTGESAL 239 (656)
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 3344556666666665554
No 40
>KOG1155|consensus
Probab=95.95 E-value=0.041 Score=59.34 Aligned_cols=95 Identities=22% Similarity=0.231 Sum_probs=70.3
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHH-HHHHHHHH
Q psy11025 320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYK-QAAEYISR 397 (535)
Q Consensus 320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~-~Aa~~l~k 397 (535)
--++||+|-.++.+|.+||.+|..+ ++.-+..|++.|+++|+.. .++|+.+|++-++.+..+|-.. .-.+...=
T Consensus 437 aLG~CY~kl~~~~eAiKCykrai~~----~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~f 512 (559)
T KOG1155|consen 437 ALGECYEKLNRLEEAIKCYKRAILL----GDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLF 512 (559)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhc----cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 3678888888888888888888765 3444668999999999964 8999999999999876555322 13333333
Q ss_pred HHHHHHHhhhHHHHHHHHHHH
Q psy11025 398 AARMCVRVKEFDKAADLIRQE 418 (535)
Q Consensus 398 aAel~e~~~~y~~Aie~ye~~ 418 (535)
.|+.+-+.++|++|..+.-..
T Consensus 513 LA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 513 LAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHHhhcchHHHHHHHHHH
Confidence 677777788888887765443
No 41
>PRK12370 invasion protein regulator; Provisional
Probab=95.93 E-value=0.3 Score=54.73 Aligned_cols=22 Identities=27% Similarity=0.212 Sum_probs=17.3
Q ss_pred HHHHHHHhccCCHHHHHHHHHH
Q psy11025 499 VALVLVQLARGDTVAAEKAFKE 520 (535)
Q Consensus 499 l~a~lc~L~~gD~V~A~~a~~~ 520 (535)
...+.|++..|+.-.|...+.+
T Consensus 445 ~~la~~l~~~G~~~eA~~~~~~ 466 (553)
T PRK12370 445 SMQVMFLSLKGKHELARKLTKE 466 (553)
T ss_pred HHHHHHHHhCCCHHHHHHHHHH
Confidence 4457777788998888888877
No 42
>KOG1129|consensus
Probab=95.88 E-value=0.12 Score=53.89 Aligned_cols=93 Identities=14% Similarity=0.166 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q psy11025 319 DAALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISR 397 (535)
Q Consensus 319 D~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~k 397 (535)
..-+.||-+-+.+.+|-+.|+.+-.-+ ..++ .|--.+|.|...+ |+.|...|.+..+.|-.+ .-++..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~-~~~d----TfllLskvY~ridQP~~AL~~~~~gld~fP~~------VT~l~g 295 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF-PHPD----TFLLLSKVYQRIDQPERALLVIGEGLDSFPFD------VTYLLG 295 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC-Cchh----HHHHHHHHHHHhccHHHHHHHHhhhhhcCCch------hhhhhh
Confidence 478899999998889988888765433 2333 3666678888877 999999999988887666 457788
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHH
Q psy11025 398 AARMCVRVKEFDKAADLIRQEIGYH 422 (535)
Q Consensus 398 aAel~e~~~~y~~Aie~ye~~~~~~ 422 (535)
+|+|++.++.+++|+++|+.+.+..
T Consensus 296 ~ARi~eam~~~~~a~~lYk~vlk~~ 320 (478)
T KOG1129|consen 296 QARIHEAMEQQEDALQLYKLVLKLH 320 (478)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 9999999999999999999987663
No 43
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.78 E-value=0.071 Score=42.96 Aligned_cols=63 Identities=17% Similarity=0.244 Sum_probs=44.6
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHhCH--H-HHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHh
Q psy11025 321 ALTLYSRAADVAHGEDNYKQAAEYISRNR--E-AASTVLEKGAKSLEELK-SDAALTLYSRAADVAH 383 (535)
Q Consensus 321 AA~lYekAA~~~eAa~af~kAA~~y~~~~--~-~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~ 383 (535)
=+.+|..-+++.+|.++|.+|.++....+ + .-+.++...|.++...+ +++|+++|++|.+++.
T Consensus 11 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 11 LARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 34556666668888888888888854322 2 24777888888887765 8888888888888764
No 44
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=95.53 E-value=0.76 Score=47.54 Aligned_cols=93 Identities=18% Similarity=0.208 Sum_probs=55.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCcccccccccc
Q psy11025 397 RAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFS 476 (535)
Q Consensus 397 kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l 476 (535)
..|.++...|+|.+|.+.+++..+.-..... .......+....|+...|...+++.......
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~------~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~------------ 180 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPDDAW------AVHAVAHVLEMQGRFKEGIAFMESWRDTWDC------------ 180 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcH------HHHHHHHHHHHcCCHHHHHHHHHhhhhccCC------------
Confidence 3445666678899999999888665433211 1111123444567777788888763221100
Q ss_pred ccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025 477 FSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE 520 (535)
Q Consensus 477 ~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~ 520 (535)
.........+..+.|++..||...|...+++
T Consensus 181 -------------~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 211 (355)
T cd05804 181 -------------SSMLRGHNWWHLALFYLERGDYEAALAIYDT 211 (355)
T ss_pred -------------CcchhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 0111122234568899999999999999987
No 45
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=95.34 E-value=0.2 Score=38.88 Aligned_cols=87 Identities=14% Similarity=0.176 Sum_probs=59.5
Q ss_pred HHHHHHHh-CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh-HHHHHHHHH
Q psy11025 358 KGAKSLEE-LKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE-HLLAIGRLA 435 (535)
Q Consensus 358 ~AAk~~ek-~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e-~~~~a~rl~ 435 (535)
..|.++-. .++++|+.++.++++...... ..+...|.++...+++++|++.|++..+...... ....
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----- 73 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDPDNA------DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYN----- 73 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCCccH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHH-----
Confidence 33444443 458999999999988755442 5677888889889999999999998876544332 1222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q psy11025 436 VALVLVQLARGDTVAAEKAFKE 457 (535)
Q Consensus 436 la~il~~L~~~D~vaA~~~~e~ 457 (535)
.+.+++..++...|...++.
T Consensus 74 --~~~~~~~~~~~~~a~~~~~~ 93 (100)
T cd00189 74 --LGLAYYKLGKYEEALEAYEK 93 (100)
T ss_pred --HHHHHHHHHhHHHHHHHHHH
Confidence 22445556777678777765
No 46
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.29 E-value=2.3 Score=40.70 Aligned_cols=105 Identities=21% Similarity=0.225 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q psy11025 350 EAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHL 428 (535)
Q Consensus 350 ~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~ 428 (535)
.+--..+..-|++|.+. +.++|+++|.++-+.... ...-.+++..+.++..-.+++.....++.++.......+-.
T Consensus 33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~---~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~ 109 (177)
T PF10602_consen 33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTS---PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDW 109 (177)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC---HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchH
Confidence 34567788888888886 599999999997774333 46667777888888888899999999999988888776667
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy11025 429 LAIGRLAVALVLVQLARGDTVAAEKAFKE 457 (535)
Q Consensus 429 ~~a~rl~la~il~~L~~~D~vaA~~~~e~ 457 (535)
....|+.+..+|..|..+++-.|-+.|-+
T Consensus 110 ~~~nrlk~~~gL~~l~~r~f~~AA~~fl~ 138 (177)
T PF10602_consen 110 ERRNRLKVYEGLANLAQRDFKEAAELFLD 138 (177)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHc
Confidence 77788888899999999999888777754
No 47
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=95.24 E-value=0.66 Score=56.71 Aligned_cols=74 Identities=18% Similarity=0.219 Sum_probs=41.9
Q ss_pred HHHhcCCcHHHHHHHHH----------HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHH
Q psy11025 380 DVAHGEDNYKQAAEYIS----------RAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTV 449 (535)
Q Consensus 380 ely~~egr~~~Aa~~l~----------kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~v 449 (535)
+.+...|++..|..++. ..|.++...+++++|++.|+++....-.. ..+++ .++.+.+..|+..
T Consensus 581 ~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~----~~a~~--~la~~~~~~g~~~ 654 (1157)
T PRK11447 581 NRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGN----ADARL--GLIEVDIAQGDLA 654 (1157)
T ss_pred HHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHH--HHHHHHHHCCCHH
Confidence 34455566666655544 35667777788888888888776543211 01111 1223444556776
Q ss_pred HHHHHHHHhh
Q psy11025 450 AAEKAFKEWG 459 (535)
Q Consensus 450 aA~~~~e~~~ 459 (535)
.|...|+...
T Consensus 655 eA~~~l~~ll 664 (1157)
T PRK11447 655 AARAQLAKLP 664 (1157)
T ss_pred HHHHHHHHHh
Confidence 6777777643
No 48
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=95.24 E-value=0.44 Score=55.65 Aligned_cols=23 Identities=9% Similarity=-0.017 Sum_probs=18.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHH
Q psy11025 498 AVALVLVQLARGDTVAAEKAFKE 520 (535)
Q Consensus 498 ~l~a~lc~L~~gD~V~A~~a~~~ 520 (535)
.+..+++.|..||.-.|...+++
T Consensus 430 ~~~~a~~al~~~~~~~A~~~~~~ 452 (765)
T PRK10049 430 EVEQAWTALDLQEWRQMDVLTDD 452 (765)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHH
Confidence 35667788888898888888877
No 49
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=95.22 E-value=0.18 Score=53.55 Aligned_cols=84 Identities=18% Similarity=0.262 Sum_probs=50.7
Q ss_pred hchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhh
Q psy11025 329 ADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKE 407 (535)
Q Consensus 329 A~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~ 407 (535)
+++.+|..+|.+|..+ .+.. +.+|...|.+|... ++++|+.++.+|+++.-.. ...+...|.++...|+
T Consensus 16 ~~~~~Ai~~~~~Al~~---~P~~-~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~------~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 16 DDFALAVDLYTQAIDL---DPNN-AELYADRAQANIKLGNFTEAVADANKAIELDPSL------AKAYLRKGTACMKLEE 85 (356)
T ss_pred CCHHHHHHHHHHHHHh---CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHHhCC
Confidence 4466666666666543 3333 34455555555544 3777777777777764432 2245556667777777
Q ss_pred HHHHHHHHHHHHHHH
Q psy11025 408 FDKAADLIRQEIGYH 422 (535)
Q Consensus 408 y~~Aie~ye~~~~~~ 422 (535)
|++|+..|++..++.
T Consensus 86 ~~eA~~~~~~al~l~ 100 (356)
T PLN03088 86 YQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHHhC
Confidence 777777777766544
No 50
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=95.19 E-value=0.87 Score=52.30 Aligned_cols=48 Identities=13% Similarity=0.034 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHH----HHHHHHHHHHH
Q psy11025 368 SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDK----AADLIRQEIGY 421 (535)
Q Consensus 368 ~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~----Aie~ye~~~~~ 421 (535)
+++|+..|.+|..+.... ..++...|.++...|+|++ |+..|+++...
T Consensus 228 ~~eA~~~~~~al~~~p~~------~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 228 YQEAIQTGESALARGLDG------AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 566666666665542211 2233344556666677764 67777766544
No 51
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=95.13 E-value=0.25 Score=46.33 Aligned_cols=99 Identities=16% Similarity=0.170 Sum_probs=59.6
Q ss_pred HHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHH
Q psy11025 322 LTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNY-KQAAEYISRAA 399 (535)
Q Consensus 322 A~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~-~~Aa~~l~kaA 399 (535)
+.+|...+++.+|..+|.+|.....+.+. .+..+...|.++... +.++|+.+|.+|+.+....... ..-+.++...+
T Consensus 42 g~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 120 (172)
T PRK02603 42 GMSAQADGEYAEALENYEEALKLEEDPND-RSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRG 120 (172)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhccch-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC
Confidence 44555556788888888888776543332 345667777777765 4999999999999975443111 11223333333
Q ss_pred HHHHHhhhHHHHHHHHHHHHHH
Q psy11025 400 RMCVRVKEFDKAADLIRQEIGY 421 (535)
Q Consensus 400 el~e~~~~y~~Aie~ye~~~~~ 421 (535)
+.....++++.|+..|+++.+.
T Consensus 121 ~~~~a~~~~~~A~~~~~~A~~~ 142 (172)
T PRK02603 121 EKAEEAGDQDEAEALFDKAAEY 142 (172)
T ss_pred ChHhHhhCHHHHHHHHHHHHHH
Confidence 3333345566666666555443
No 52
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=95.12 E-value=0.17 Score=53.70 Aligned_cols=100 Identities=17% Similarity=0.220 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHH
Q psy11025 352 ASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHLLA 430 (535)
Q Consensus 352 AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~ 430 (535)
|..++.+|..++...++++|+++|.+|+.+.-.. ..++...|.++...++|++|+..++++.++.-.. ..+..
T Consensus 2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~ 75 (356)
T PLN03088 2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNN------AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLR 75 (356)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHH
Confidence 3456777888888888899999999998875543 3466677778888899999999999998876543 22333
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCC
Q psy11025 431 IGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEA 464 (535)
Q Consensus 431 a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~ 464 (535)
.+ ++++..|+...|+..|++......+
T Consensus 76 lg-------~~~~~lg~~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 76 KG-------TACMKLEEYQTAKAALEKGASLAPG 102 (356)
T ss_pred HH-------HHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 33 3344556766788888886655543
No 53
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=95.09 E-value=0.19 Score=41.35 Aligned_cols=81 Identities=15% Similarity=0.208 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhc
Q psy11025 366 LKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLAR 445 (535)
Q Consensus 366 ~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~ 445 (535)
.++++|+.+|++.++..... + -..++-..|..+-+.|+|.+|++++++ ...-.. .....+.++ -|.+..
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~--~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~----~~~~~~l~a--~~~~~l 71 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTN--P--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS----NPDIHYLLA--RCLLKL 71 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGT--H--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC----HHHHHHHHH--HHHHHT
T ss_pred ccHHHHHHHHHHHHHHCCCC--h--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC----CHHHHHHHH--HHHHHh
Confidence 34788888898888887652 2 223555688888888999999999988 211111 111222222 334444
Q ss_pred CCHHHHHHHHHH
Q psy11025 446 GDTVAAEKAFKE 457 (535)
Q Consensus 446 ~D~vaA~~~~e~ 457 (535)
+....|+++|++
T Consensus 72 ~~y~eAi~~l~~ 83 (84)
T PF12895_consen 72 GKYEEAIKALEK 83 (84)
T ss_dssp T-HHHHHHHHHH
T ss_pred CCHHHHHHHHhc
Confidence 555558888875
No 54
>KOG3617|consensus
Probab=95.02 E-value=0.75 Score=53.03 Aligned_cols=100 Identities=27% Similarity=0.303 Sum_probs=65.4
Q ss_pred HHHHHHHHHhc----hHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHh------cCCc
Q psy11025 320 AALTLYSRAAD----VAHGEDNYKQAAEYISRN-REAASTVLEKGAKSLEELK-SDAALTLYSRAADVAH------GEDN 387 (535)
Q Consensus 320 ~AA~lYekAA~----~~eAa~af~kAA~~y~~~-~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~------~egr 387 (535)
.|.+.|||+++ .++-..-|-++.+.|.+. .+. ..|.=.+..+|... .+.|+.+|..|-++|. -.|+
T Consensus 876 ~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~--~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk 953 (1416)
T KOG3617|consen 876 AALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDE--SLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGK 953 (1416)
T ss_pred HHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccch--HHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccC
Confidence 45666666665 233333344555555331 121 34555667777654 8999999999999974 4577
Q ss_pred HHHHHHHHHH---------HHHHHHHhhhHHHHHHHHHHHHHH
Q psy11025 388 YKQAAEYISR---------AARMCVRVKEFDKAADLIRQEIGY 421 (535)
Q Consensus 388 ~~~Aa~~l~k---------aAel~e~~~~y~~Aie~ye~~~~~ 421 (535)
.+.|+..-.+ +|++||..|++.+|+.+|-++--.
T Consensus 954 ~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 954 TDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred chHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 7776654432 567889999999999999887433
No 55
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=94.70 E-value=0.38 Score=40.96 Aligned_cols=98 Identities=11% Similarity=0.000 Sum_probs=64.6
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy11025 357 EKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAV 436 (535)
Q Consensus 357 ~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~l 436 (535)
..+-..++..+.++|+++|.+++..+.... .....+...|.++...++|.+|+++|++....+-.......+ ...
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~-~~~- 81 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKST---YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDA-LLK- 81 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcc---ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHH-HHH-
Confidence 333344445569999999999998765432 234566778999999999999999999987665332111111 111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025 437 ALVLVQLARGDTVAAEKAFKEWGN 460 (535)
Q Consensus 437 a~il~~L~~~D~vaA~~~~e~~~~ 460 (535)
...+.+..++...|...|+++..
T Consensus 82 -~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 82 -LGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred -HHHHHHHhCChHHHHHHHHHHHH
Confidence 12345566777778888887443
No 56
>KOG0553|consensus
Probab=94.63 E-value=0.36 Score=49.66 Aligned_cols=90 Identities=23% Similarity=0.283 Sum_probs=54.9
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy11025 356 LEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLA 435 (535)
Q Consensus 356 l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~ 435 (535)
=.+..++++..++.+||++|.+|+++- +..|.-+..++| .|.++|.|+.|++-++.+..+ ...+.++ +
T Consensus 85 K~eGN~~m~~~~Y~eAv~kY~~AI~l~-----P~nAVyycNRAA-Ay~~Lg~~~~AVkDce~Al~i---Dp~yska---y 152 (304)
T KOG0553|consen 85 KNEGNKLMKNKDYQEAVDKYTEAIELD-----PTNAVYYCNRAA-AYSKLGEYEDAVKDCESALSI---DPHYSKA---Y 152 (304)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcC-----CCcchHHHHHHH-HHHHhcchHHHHHHHHHHHhc---ChHHHHH---H
Confidence 344556666666788888888887764 233455555555 566678888888777775322 1222222 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q psy11025 436 VALVLVQLARGDTVAAEKAFKE 457 (535)
Q Consensus 436 la~il~~L~~~D~vaA~~~~e~ 457 (535)
.-+++++++.|..+.|+..|.+
T Consensus 153 ~RLG~A~~~~gk~~~A~~aykK 174 (304)
T KOG0553|consen 153 GRLGLAYLALGKYEEAIEAYKK 174 (304)
T ss_pred HHHHHHHHccCcHHHHHHHHHh
Confidence 2224567777777777777765
No 57
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=94.61 E-value=0.48 Score=44.15 Aligned_cols=95 Identities=15% Similarity=0.066 Sum_probs=54.0
Q ss_pred HhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHh
Q psy11025 328 AADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDN-YKQAAEYISRAARMCVRV 405 (535)
Q Consensus 328 AA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr-~~~Aa~~l~kaAel~e~~ 405 (535)
.+++.+|..+|.+|.....+... -+.++...+.++...+ +++|+.+|++|..+....+. ...-+.++...++++...
T Consensus 48 ~g~~~~A~~~~~~al~l~~~~~~-~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~ 126 (168)
T CHL00033 48 EGEYAEALQNYYEAMRLEIDPYD-RSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQ 126 (168)
T ss_pred cCCHHHHHHHHHHHHhccccchh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHc
Confidence 34466677777766655322221 2345666667776654 77888888888776433221 223344455555555566
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy11025 406 KEFDKAADLIRQEIGYHQ 423 (535)
Q Consensus 406 ~~y~~Aie~ye~~~~~~~ 423 (535)
|+++.|...|.+....+.
T Consensus 127 g~~~~A~~~~~~a~~~~~ 144 (168)
T CHL00033 127 GDSEIAEAWFDQAAEYWK 144 (168)
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 777777766666655443
No 58
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.45 E-value=0.35 Score=48.23 Aligned_cols=140 Identities=17% Similarity=0.067 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-hhH
Q psy11025 350 EAASTVLEKGAKSLEE-LKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE-SEH 427 (535)
Q Consensus 350 ~~AA~~l~~AAk~~ek-~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a-~e~ 427 (535)
+.|++...+-|--|-+ .|+..|-..+++|.++=-.. .....-.|.+|.+.|..+.|-+.|+++..+--. .+.
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~------~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdV 105 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSY------YLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDV 105 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccch
Confidence 4566666665555443 45788888888887762222 123334567888889999999999998766543 456
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhc
Q psy11025 428 LLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLA 507 (535)
Q Consensus 428 ~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~ 507 (535)
+++-|.+ ||....++. |..-|++ ...+|. |......+..+|+|.|-
T Consensus 106 LNNYG~F-----LC~qg~~~e--A~q~F~~---Al~~P~------------------------Y~~~s~t~eN~G~Cal~ 151 (250)
T COG3063 106 LNNYGAF-----LCAQGRPEE--AMQQFER---ALADPA------------------------YGEPSDTLENLGLCALK 151 (250)
T ss_pred hhhhhHH-----HHhCCChHH--HHHHHHH---HHhCCC------------------------CCCcchhhhhhHHHHhh
Confidence 7777744 787765555 7777775 333333 33344445778999999
Q ss_pred cCCHHHHHHHHHH---h-cCCCCchh
Q psy11025 508 RGDTVAAEKAFKE---W-GNCCEAPE 529 (535)
Q Consensus 508 ~gD~V~A~~a~~~---~-~~F~~s~E 529 (535)
+|+.-.|+.-|++ + |+|..+..
T Consensus 152 ~gq~~~A~~~l~raL~~dp~~~~~~l 177 (250)
T COG3063 152 AGQFDQAEEYLKRALELDPQFPPALL 177 (250)
T ss_pred cCCchhHHHHHHHHHHhCcCCChHHH
Confidence 9999999988887 2 88887764
No 59
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=94.42 E-value=0.39 Score=44.00 Aligned_cols=87 Identities=16% Similarity=0.072 Sum_probs=42.1
Q ss_pred hCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHH
Q psy11025 365 ELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHLLAIGRLAVALVLVQL 443 (535)
Q Consensus 365 k~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~a~rl~la~il~~L 443 (535)
..++++|+.+|.+|+.+--.. ...+...|.++...|+|++|+..|+++...--.. +.....| +|.+
T Consensus 37 ~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg-------~~l~ 103 (144)
T PRK15359 37 EGDYSRAVIDFSWLVMAQPWS------WRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTG-------VCLK 103 (144)
T ss_pred cCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH-------HHHH
Confidence 334555666666555442221 2334445555555566666666666665554332 2233332 2333
Q ss_pred hcCCHHHHHHHHHHhhhccCC
Q psy11025 444 ARGDTVAAEKAFKEWGNCCEA 464 (535)
Q Consensus 444 ~~~D~vaA~~~~e~~~~~~~~ 464 (535)
..|+...|+.+|+..-..+.+
T Consensus 104 ~~g~~~eAi~~~~~Al~~~p~ 124 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMSYA 124 (144)
T ss_pred HcCCHHHHHHHHHHHHHhCCC
Confidence 445555566666554444443
No 60
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=94.41 E-value=0.62 Score=41.13 Aligned_cols=92 Identities=16% Similarity=0.076 Sum_probs=60.7
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q psy11025 321 ALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAA 399 (535)
Q Consensus 321 AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaA 399 (535)
-+.+|.+.+++.+|...|.++....-.+ ...+...+.++-.. ++++|+.+|.+++.+.... ...+...|
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~la 92 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAAYDPYN----SRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD------PRPYFHAA 92 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC------hHHHHHHH
Confidence 4455555666777777777776653222 23455666666543 4888888888888775332 33445667
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHH
Q psy11025 400 RMCVRVKEFDKAADLIRQEIGYH 422 (535)
Q Consensus 400 el~e~~~~y~~Aie~ye~~~~~~ 422 (535)
.++...+++++|+..|++..+..
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 93 ECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhc
Confidence 77888888888888888776554
No 61
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=94.40 E-value=0.49 Score=48.20 Aligned_cols=99 Identities=10% Similarity=0.062 Sum_probs=70.6
Q ss_pred HHHHHHH-HHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy11025 356 LEKGAKS-LEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRL 434 (535)
Q Consensus 356 l~~AAk~-~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl 434 (535)
|..|... +++.++++|+..|++.+..|-... .+...+-.+|+++...++|++|+..|+.....|-.......+.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~---~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl-- 220 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDST---YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM-- 220 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH--
Confidence 4444444 334568889999999998887763 4445667899999999999999999999988876543333221
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025 435 AVALVLVQLARGDTVAAEKAFKEWGN 460 (535)
Q Consensus 435 ~la~il~~L~~~D~vaA~~~~e~~~~ 460 (535)
+.++.|+...+|...|...|+++..
T Consensus 221 -~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 221 -FKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1123556677899889999998544
No 62
>KOG1126|consensus
Probab=94.37 E-value=0.15 Score=57.09 Aligned_cols=120 Identities=18% Similarity=0.215 Sum_probs=71.9
Q ss_pred HHHHHHHHHHH--hCHHHHHHHHHHHHHHHH---------------hCCHHHHHHHHHHHHHH--------------Hhc
Q psy11025 336 DNYKQAAEYIS--RNREAASTVLEKGAKSLE---------------ELKSDAALTLYSRAADV--------------AHG 384 (535)
Q Consensus 336 ~af~kAA~~y~--~~~~~AA~~l~~AAk~~e---------------k~~~~eAie~y~kAael--------------y~~ 384 (535)
+.|.=+++||- +..+.|.+|+.+|..+=+ ....|.|+.+|.+|+.+ |..
T Consensus 422 esWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K 501 (638)
T KOG1126|consen 422 ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK 501 (638)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec
Confidence 44555556652 233445566666554322 11267777777777643 566
Q ss_pred CCcHHHHHHHHHHHHH--------------HHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHH
Q psy11025 385 EDNYKQAAEYISRAAR--------------MCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVA 450 (535)
Q Consensus 385 egr~~~Aa~~l~kaAe--------------l~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~va 450 (535)
.|++..|--+++|+.+ ++.+.++.++|+++|+++.-+ +...-.++..-+.++..| ++.+.
T Consensus 502 qek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l----d~kn~l~~~~~~~il~~~--~~~~e 575 (638)
T KOG1126|consen 502 QEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL----DPKNPLCKYHRASILFSL--GRYVE 575 (638)
T ss_pred cchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc----CCCCchhHHHHHHHHHhh--cchHH
Confidence 7788888888888776 456678888999999887422 222222333333345555 45555
Q ss_pred HHHHHHHhhhc
Q psy11025 451 AEKAFKEWGNC 461 (535)
Q Consensus 451 A~~~~e~~~~~ 461 (535)
|-..+|+...+
T Consensus 576 al~~LEeLk~~ 586 (638)
T KOG1126|consen 576 ALQELEELKEL 586 (638)
T ss_pred HHHHHHHHHHh
Confidence 88888875553
No 63
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=94.35 E-value=1.5 Score=52.64 Aligned_cols=20 Identities=15% Similarity=-0.037 Sum_probs=12.7
Q ss_pred HHHHhcCCHHHHHHHHHHhh
Q psy11025 440 LVQLARGDTVAAEKAFKEWG 459 (535)
Q Consensus 440 l~~L~~~D~vaA~~~~e~~~ 459 (535)
++.+..|+...|...|++..
T Consensus 685 ~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 685 YVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 44556677766777777643
No 64
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=94.11 E-value=0.43 Score=37.27 Aligned_cols=60 Identities=8% Similarity=0.163 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHH
Q psy11025 355 VLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVK-EFDKAADLIRQEIG 420 (535)
Q Consensus 355 ~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~-~y~~Aie~ye~~~~ 420 (535)
.+..-|.++-.. ++++|+.+|.+|+++-... ...+...|.++...+ +|.+|++.|+++.+
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~------~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN------AEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH------HHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 344445555444 4888888888888873222 337777777888877 78888888887654
No 65
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=93.98 E-value=0.57 Score=38.42 Aligned_cols=81 Identities=14% Similarity=0.193 Sum_probs=49.8
Q ss_pred hchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhh
Q psy11025 329 ADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKE 407 (535)
Q Consensus 329 A~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~ 407 (535)
+++.+|...|.++......++ ... .+..-|.|+=+. +.++|++++.+ ..+-. .. ..+.--.|+.+.++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~-~~~-~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-----~~-~~~~~l~a~~~~~l~~ 73 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNP-NSA-YLYNLAQCYFQQGKYEEAIELLQK-LKLDP-----SN-PDIHYLLARCLLKLGK 73 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTH-HHH-HHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-----CH-HHHHHHHHHHHHHTT-
T ss_pred ccHHHHHHHHHHHHHHCCCCh-hHH-HHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-----CC-HHHHHHHHHHHHHhCC
Confidence 346677777777766554333 222 334456666554 48899999887 21111 11 2233344899999999
Q ss_pred HHHHHHHHHHH
Q psy11025 408 FDKAADLIRQE 418 (535)
Q Consensus 408 y~~Aie~ye~~ 418 (535)
|++|+++|+++
T Consensus 74 y~eAi~~l~~~ 84 (84)
T PF12895_consen 74 YEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcC
Confidence 99999999874
No 66
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=93.96 E-value=0.8 Score=43.13 Aligned_cols=102 Identities=17% Similarity=0.124 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-hH
Q psy11025 349 REAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EH 427 (535)
Q Consensus 349 ~~~AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e~ 427 (535)
.++=...|.-|...|...+.++|..+|+-.+.+=... ...+...|-++-..++|++||+.|..+..+--.. ..
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~------~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS------FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 3444556777888888888888888888777662222 3456667767777899999999999987554321 22
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccC
Q psy11025 428 LLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCE 463 (535)
Q Consensus 428 ~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~ 463 (535)
+..++ .|+|..|+...|.++|+.....|.
T Consensus 106 ~~~ag-------~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 106 PWAAA-------ECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHH-------HHHHHcCCHHHHHHHHHHHHHHhc
Confidence 34443 788899999999999998666663
No 67
>PRK12370 invasion protein regulator; Provisional
Probab=93.91 E-value=2.2 Score=47.89 Aligned_cols=18 Identities=28% Similarity=0.172 Sum_probs=11.2
Q ss_pred HHHhcCCHHHHHHHHHHh
Q psy11025 441 VQLARGDTVAAEKAFKEW 458 (535)
Q Consensus 441 ~~L~~~D~vaA~~~~e~~ 458 (535)
++...|+...|...++++
T Consensus 450 ~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 450 FLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHHhCCCHHHHHHHHHHh
Confidence 344456766677777663
No 68
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=93.78 E-value=1.4 Score=40.97 Aligned_cols=106 Identities=15% Similarity=0.072 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-h
Q psy11025 349 REAASTVLEKGAKSLEE-LKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-E 426 (535)
Q Consensus 349 ~~~AA~~l~~AAk~~ek-~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e 426 (535)
.+..+.++...+.++.. .++++|+.+|.+|..+.... ..-+..+..+|.++...+++++|++.|+++....... +
T Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~---~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~ 107 (168)
T CHL00033 31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP---YDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQ 107 (168)
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc---hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH
Confidence 33456777777777765 45999999999999885322 2223477889999999999999999999987653221 1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy11025 427 HLLAIGRLAVALVLVQLARGDTVAAEKAFKE 457 (535)
Q Consensus 427 ~~~~a~rl~la~il~~L~~~D~vaA~~~~e~ 457 (535)
.....+.+..-..-.....|+...|...|.+
T Consensus 108 ~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 108 ALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 2222222221111122356676555555543
No 69
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=93.75 E-value=0.63 Score=46.77 Aligned_cols=83 Identities=16% Similarity=0.133 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCC
Q psy11025 368 SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGD 447 (535)
Q Consensus 368 ~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D 447 (535)
....|+++.+|.+.|...++.+++..+...+|+.+...|+|++|+++|+.+...|..++-..-...+...+.-|....+|
T Consensus 154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~ 233 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGD 233 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 56789999999999999999999999999999999999999999999999987777665443333333333456666667
Q ss_pred HHH
Q psy11025 448 TVA 450 (535)
Q Consensus 448 ~va 450 (535)
...
T Consensus 234 ~~~ 236 (247)
T PF11817_consen 234 VED 236 (247)
T ss_pred HHH
Confidence 643
No 70
>PRK04841 transcriptional regulator MalT; Provisional
Probab=93.72 E-value=4.6 Score=47.60 Aligned_cols=130 Identities=14% Similarity=0.071 Sum_probs=86.0
Q ss_pred hCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH---H-HHHHHHHHHHHH
Q psy11025 365 ELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEH---L-LAIGRLAVALVL 440 (535)
Q Consensus 365 k~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~---~-~~a~rl~la~il 440 (535)
..++++|..+|.+|..++...|........+...|.++...|++.+|.+.+++..+....... . .......+ ..
T Consensus 504 ~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l--a~ 581 (903)
T PRK04841 504 KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR--AQ 581 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH--HH
Confidence 346899999999999998888877777778888899988899999999999998776554321 1 11111112 23
Q ss_pred HHHhcCCHHHHHHHHHHhhhccCCCCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025 441 VQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE 520 (535)
Q Consensus 441 ~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~ 520 (535)
+....|+...|...+++...... .. ..... .......+.+++..||...|...++.
T Consensus 582 ~~~~~G~~~~A~~~~~~al~~~~-------------------~~----~~~~~-~~~~~~la~~~~~~G~~~~A~~~l~~ 637 (903)
T PRK04841 582 LLWEWARLDEAEQCARKGLEVLS-------------------NY----QPQQQ-LQCLAMLAKISLARGDLDNARRYLNR 637 (903)
T ss_pred HHHHhcCHHHHHHHHHHhHHhhh-------------------cc----CchHH-HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44556888888777775221100 00 00011 12224457788899999999888766
No 71
>KOG3617|consensus
Probab=93.70 E-value=1.1 Score=51.70 Aligned_cols=66 Identities=21% Similarity=0.334 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhCC--HHHHHHHHHHHHHH-------HhcCC-----------cHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy11025 353 STVLEKGAKSLEELK--SDAALTLYSRAADV-------AHGED-----------NYKQAAEYISRAARMCVRVKEFDKAA 412 (535)
Q Consensus 353 A~~l~~AAk~~ek~~--~~eAie~y~kAael-------y~~eg-----------r~~~Aa~~l~kaAel~e~~~~y~~Ai 412 (535)
..-++.||..||+.. .+.||.+|.+|..+ |...- ...+-.+.+.+.|++++..++|++|+
T Consensus 1021 ~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV 1100 (1416)
T KOG3617|consen 1021 GSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAV 1100 (1416)
T ss_pred chhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHH
Confidence 345677777777753 67777777766443 11110 11122345666677777777777777
Q ss_pred HHHHHH
Q psy11025 413 DLIRQE 418 (535)
Q Consensus 413 e~ye~~ 418 (535)
+++-.+
T Consensus 1101 ~lL~~a 1106 (1416)
T KOG3617|consen 1101 NLLCLA 1106 (1416)
T ss_pred HHHHHH
Confidence 666443
No 72
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=93.52 E-value=0.56 Score=42.13 Aligned_cols=95 Identities=21% Similarity=0.203 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy11025 355 VLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGR 433 (535)
Q Consensus 355 ~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~r 433 (535)
+..+.|-++...+ +++|+.+|++|.+. ...| ....+++...|..+-.+|++++|+.++++....+-..+. ....+
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-gL~~--~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~-~~~l~ 78 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAA-GLSG--ADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDEL-NAALR 78 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCc--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc-cHHHH
Confidence 4556666776654 88888888888774 2222 234467777888888888888888888877655433222 22223
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH
Q psy11025 434 LAVALVLVQLARGDTVAAEKAF 455 (535)
Q Consensus 434 l~la~il~~L~~~D~vaA~~~~ 455 (535)
..+++.+..+. ....|...+
T Consensus 79 ~f~Al~L~~~g--r~~eAl~~~ 98 (120)
T PF12688_consen 79 VFLALALYNLG--RPKEALEWL 98 (120)
T ss_pred HHHHHHHHHCC--CHHHHHHHH
Confidence 33343444443 333355444
No 73
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=93.52 E-value=1 Score=41.19 Aligned_cols=97 Identities=11% Similarity=0.016 Sum_probs=68.1
Q ss_pred CCHH---HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhcCCcHHHH
Q psy11025 316 LKPD---AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEE-LKSDAALTLYSRAADVAHGEDNYKQA 391 (535)
Q Consensus 316 ~K~D---~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek-~~~~eAie~y~kAaely~~egr~~~A 391 (535)
+.|+ .-+..+.+.+.+.+|..+|.+|..+ .|..+ ..+..-|.++.. .++++|+.+|.+|+.+--..
T Consensus 22 ~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~-~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~------ 91 (144)
T PRK15359 22 VDPETVYASGYASWQEGDYSRAVIDFSWLVMA---QPWSW-RAHIALAGTWMMLKEYTTAINFYGHALMLDASH------ 91 (144)
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcH-HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC------
Confidence 4555 2234444556678888888887543 45544 455555555554 45999999999999874433
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy11025 392 AEYISRAARMCVRVKEFDKAADLIRQEIGYH 422 (535)
Q Consensus 392 a~~l~kaAel~e~~~~y~~Aie~ye~~~~~~ 422 (535)
...+-..|..+...|++++|++.|+++....
T Consensus 92 ~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 92 PEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3566778888888999999999999986554
No 74
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=93.52 E-value=7.1 Score=40.26 Aligned_cols=92 Identities=12% Similarity=0.069 Sum_probs=58.3
Q ss_pred HHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q psy11025 322 LTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAAR 400 (535)
Q Consensus 322 A~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAe 400 (535)
+.+|...|.+.+|...|.++...-.++ +.++.-.+.++.+. ++++|+.+|.++....... +.....++...|.
T Consensus 121 a~~~~~~G~~~~A~~~~~~al~~~p~~----~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~--~~~~~~~~~~la~ 194 (355)
T cd05804 121 AFGLEEAGQYDRAEEAARRALELNPDD----AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS--SMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCC----cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC--cchhHHHHHHHHH
Confidence 345666677778888887776643222 12233345555544 4888888888887776542 2333445556677
Q ss_pred HHHHhhhHHHHHHHHHHHH
Q psy11025 401 MCVRVKEFDKAADLIRQEI 419 (535)
Q Consensus 401 l~e~~~~y~~Aie~ye~~~ 419 (535)
++...|++++|+.+|++..
T Consensus 195 ~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 195 FYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHCCCHHHHHHHHHHHh
Confidence 7777788888888887763
No 75
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=93.44 E-value=0.37 Score=48.67 Aligned_cols=87 Identities=18% Similarity=0.254 Sum_probs=11.0
Q ss_pred HHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Q psy11025 322 LTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARM 401 (535)
Q Consensus 322 A~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel 401 (535)
+++.+..+++++|..+|.+.... +......+.+.+.++...++++|+++++++.+-+.. ..++..++.+
T Consensus 51 a~La~~~~~~~~A~~ay~~l~~~----~~~~~~~~~~l~~l~~~~~~~~A~~~~~~~~~~~~~-------~~~l~~~l~~ 119 (280)
T PF13429_consen 51 ADLAWSLGDYDEAIEAYEKLLAS----DKANPQDYERLIQLLQDGDPEEALKLAEKAYERDGD-------PRYLLSALQL 119 (280)
T ss_dssp ------------------------------------------------------------------------------H-
T ss_pred ccccccccccccccccccccccc----cccccccccccccccccccccccccccccccccccc-------cchhhHHHHH
Confidence 33444444445555555544321 111233455555554445566666666655443211 1344455555
Q ss_pred HHHhhhHHHHHHHHHHHH
Q psy11025 402 CVRVKEFDKAADLIRQEI 419 (535)
Q Consensus 402 ~e~~~~y~~Aie~ye~~~ 419 (535)
+...++++++.+++++..
T Consensus 120 ~~~~~~~~~~~~~l~~~~ 137 (280)
T PF13429_consen 120 YYRLGDYDEAEELLEKLE 137 (280)
T ss_dssp HHHTT-HHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 666666666666666643
No 76
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=93.40 E-value=3 Score=48.32 Aligned_cols=148 Identities=16% Similarity=0.122 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHH
Q psy11025 331 VAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFD 409 (535)
Q Consensus 331 ~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~ 409 (535)
..+++.++-++-.+-++-+++ +.++.-.|.+....+ .++|..+++.++++.-+. .......|.++.+.++++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~------~~a~~~~a~~L~~~~~~e 137 (694)
T PRK15179 65 VHKPAAALPELLDYVRRYPHT-ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS------SEAFILMLRGVKRQQGIE 137 (694)
T ss_pred hcchHhhHHHHHHHHHhcccc-HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHhccHH
Confidence 455555555554444444443 455666677777665 788888888888876544 223444566667778888
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCccccccccccccccccchhhhhh
Q psy11025 410 KAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESE 489 (535)
Q Consensus 410 ~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~~~ 489 (535)
+|...+++..+.-- .+.......+..+.++..++. |..+|++... .+|.+
T Consensus 138 eA~~~~~~~l~~~p----~~~~~~~~~a~~l~~~g~~~~--A~~~y~~~~~--~~p~~---------------------- 187 (694)
T PRK15179 138 AGRAEIELYFSGGS----SSAREILLEAKSWDEIGQSEQ--ADACFERLSR--QHPEF---------------------- 187 (694)
T ss_pred HHHHHHHHHhhcCC----CCHHHHHHHHHHHHHhcchHH--HHHHHHHHHh--cCCCc----------------------
Confidence 88888877643211 111112223334556655555 8888887432 12111
Q ss_pred hHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025 490 HLLAIGRLAVALVLVQLARGDTVAAEKAFKE 520 (535)
Q Consensus 490 ~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~ 520 (535)
....++-+.++.-+|+.-+|..+|++
T Consensus 188 -----~~~~~~~a~~l~~~G~~~~A~~~~~~ 213 (694)
T PRK15179 188 -----ENGYVGWAQSLTRRGALWRARDVLQA 213 (694)
T ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 11235556777777777777777766
No 77
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=93.38 E-value=9.6 Score=38.24 Aligned_cols=139 Identities=8% Similarity=-0.071 Sum_probs=83.2
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q psy11025 321 ALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKS-LEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAA 399 (535)
Q Consensus 321 AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~-~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaA 399 (535)
.|..+.+.+++.+|...|++....|-.++. +.++....|.+ |+..+.++|+..|++.++.|-+..+...|.-.+..+-
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~-a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPY-SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 344444568899999999999998876643 44444444444 4556799999999999999988876554433332221
Q ss_pred HHHH--------------H-hhhHHHHHHHHHHHHHHHHHhhHHHHH-----------HHHHHHHHHHHHhcCCHHHHHH
Q psy11025 400 RMCV--------------R-VKEFDKAADLIRQEIGYHQESEHLLAI-----------GRLAVALVLVQLARGDTVAAEK 453 (535)
Q Consensus 400 el~e--------------~-~~~y~~Aie~ye~~~~~~~a~e~~~~a-----------~rl~la~il~~L~~~D~vaA~~ 453 (535)
.-+. + ...-.+|++.|++..+.|=..++...+ ++--+...-.++..+..++|+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~ 196 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVN 196 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 0000 0 122457888888887776433221111 1111111122455778888877
Q ss_pred HHHHhhh
Q psy11025 454 AFKEWGN 460 (535)
Q Consensus 454 ~~e~~~~ 460 (535)
-++.+..
T Consensus 197 r~~~v~~ 203 (243)
T PRK10866 197 RVEQMLR 203 (243)
T ss_pred HHHHHHH
Confidence 7776443
No 78
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=93.33 E-value=0.9 Score=45.82 Aligned_cols=126 Identities=20% Similarity=0.234 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q psy11025 319 DAALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISR 397 (535)
Q Consensus 319 D~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~k 397 (535)
..++.+|.+.+.+.++.+.+.++.. ..........|...|.++.+.+ +++|+++|++|+++.-.... ....
T Consensus 114 ~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~------~~~~ 185 (280)
T PF13429_consen 114 LSALQLYYRLGDYDEAEELLEKLEE--LPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD------ARNA 185 (280)
T ss_dssp ----H-HHHTT-HHHHHHHHHHHHH---T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH------HHHH
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHh--ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH------HHHH
Confidence 3688889999999999999988663 1111234667888999999876 99999999999999877632 3444
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q psy11025 398 AARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 458 (535)
Q Consensus 398 aAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~ 458 (535)
.+-++...|++.++.++++...+.......+.. .++ .+.+..|+...|...|++.
T Consensus 186 l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~----~la--~~~~~lg~~~~Al~~~~~~ 240 (280)
T PF13429_consen 186 LAWLLIDMGDYDEAREALKRLLKAAPDDPDLWD----ALA--AAYLQLGRYEEALEYLEKA 240 (280)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCH----HHH--HHHHHHT-HHHHHHHHHHH
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHH----HHH--HHhcccccccccccccccc
Confidence 566777778999877777665444322211111 111 2333446666688888873
No 79
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=92.90 E-value=0.39 Score=37.18 Aligned_cols=56 Identities=13% Similarity=0.144 Sum_probs=33.3
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy11025 359 GAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIG 420 (535)
Q Consensus 359 AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~ 420 (535)
|-..++..++++|+.+|++++..+-. -.+.+...|.++...|+|++|+.+|++..+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPD------NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTT------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344444567777777766665522 345566666666667777777777766643
No 80
>PRK04841 transcriptional regulator MalT; Provisional
Probab=92.87 E-value=10 Score=44.61 Aligned_cols=59 Identities=14% Similarity=0.130 Sum_probs=44.6
Q ss_pred HhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy11025 364 EELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ 423 (535)
Q Consensus 364 ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~ 423 (535)
...++++|..++.+|..+....+. .....++...|.+....|++.+|.+.+++....+.
T Consensus 585 ~~G~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~ 643 (903)
T PRK04841 585 EWARLDEAEQCARKGLEVLSNYQP-QQQLQCLAMLAKISLARGDLDNARRYLNRLENLLG 643 (903)
T ss_pred HhcCHHHHHHHHHHhHHhhhccCc-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 345688999999999998775542 33345667788888888999999999988866543
No 81
>KOG3616|consensus
Probab=92.65 E-value=3.5 Score=47.22 Aligned_cols=85 Identities=13% Similarity=0.138 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHhC-CHHHHHHHHHH------HHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q psy11025 353 STVLEKGAKSLEEL-KSDAALTLYSR------AADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES 425 (535)
Q Consensus 353 A~~l~~AAk~~ek~-~~~eAie~y~k------Aaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~ 425 (535)
+..|.+|+..|++. +++.|++||++ |+++-.-. =+..-.++-...+.-++..++|+-|+..|-++..+.-+.
T Consensus 661 ~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfa-fp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kai 739 (1636)
T KOG3616|consen 661 GELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFA-FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAI 739 (1636)
T ss_pred hHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhh-CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHH
Confidence 57888999999986 58999988764 33331111 012233344445556677888888888888877666666
Q ss_pred hHHHHHHHHHHHH
Q psy11025 426 EHLLAIGRLAVAL 438 (535)
Q Consensus 426 e~~~~a~rl~la~ 438 (535)
+.-..+-.|.-++
T Consensus 740 eaai~akew~kai 752 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAI 752 (1636)
T ss_pred HHHhhhhhhhhhH
Confidence 5544444444433
No 82
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=92.50 E-value=10 Score=39.90 Aligned_cols=135 Identities=19% Similarity=0.249 Sum_probs=86.1
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q psy11025 320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRA 398 (535)
Q Consensus 320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~ka 398 (535)
+=+.-|..||-+++|-+.|.... +.+++|-.++.+-..+|.... ++.||+.-++=..+=... ..-.-|+++=..
T Consensus 112 qL~~Dym~aGl~DRAE~~f~~L~----de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~-~~~eIAqfyCEL 186 (389)
T COG2956 112 QLGRDYMAAGLLDRAEDIFNQLV----DEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT-YRVEIAQFYCEL 186 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHh----cchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc-chhHHHHHHHHH
Confidence 45666777777777777776643 357888889999999998764 889987755433332222 223445555555
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCc
Q psy11025 399 ARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPER 467 (535)
Q Consensus 399 Ael~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f 467 (535)
|.-+....+.+.|+++++++. ++....-.| .+-.+-+.+..||+.+|.+.|+.+.. .|+.|
T Consensus 187 Aq~~~~~~~~d~A~~~l~kAl---qa~~~cvRA---si~lG~v~~~~g~y~~AV~~~e~v~e--Qn~~y 247 (389)
T COG2956 187 AQQALASSDVDRARELLKKAL---QADKKCVRA---SIILGRVELAKGDYQKAVEALERVLE--QNPEY 247 (389)
T ss_pred HHHHhhhhhHHHHHHHHHHHH---hhCccceeh---hhhhhHHHHhccchHHHHHHHHHHHH--hChHH
Confidence 555555678888888887763 332222222 22223456778999889999988665 44444
No 83
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=92.47 E-value=2.1 Score=40.01 Aligned_cols=67 Identities=16% Similarity=0.164 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy11025 353 STVLEKGAKSLEE-LKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH 422 (535)
Q Consensus 353 A~~l~~AAk~~ek-~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~ 422 (535)
+.++..-+..+.. .++++|+.+|++|+.+..... .....+...|.++...|+|++|+.+|+++.+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 102 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN---DRSYILYNMGIIYASNGEHDKALEYYHQALELN 102 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4445555555544 569999999999998754322 234678889999999999999999999987654
No 84
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=92.42 E-value=11 Score=36.44 Aligned_cols=133 Identities=13% Similarity=0.018 Sum_probs=76.0
Q ss_pred HHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH-----HH
Q psy11025 327 RAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEE-LKSDAALTLYSRAADVAHGEDNYKQAAEYISRA-----AR 400 (535)
Q Consensus 327 kAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek-~~~~eAie~y~kAaely~~egr~~~Aa~~l~ka-----Ae 400 (535)
+.|+|.+|...|.+...-|-.++. +.++....|.++-+ .+.++|+..|++=+..|-.......|.-.+..+ -.
T Consensus 17 ~~g~y~~Ai~~f~~l~~~~P~s~~-a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~ 95 (203)
T PF13525_consen 17 QQGDYEEAIKLFEKLIDRYPNSPY-APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPG 95 (203)
T ss_dssp HCT-HHHHHHHHHHHHHH-TTSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCcc
Confidence 335688999999998877755543 45555666666654 569999999999999998887655442222111 11
Q ss_pred H---HHHhhhHHHHHHHHHHHHHHHHHhhHHHHH-----------HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025 401 M---CVRVKEFDKAADLIRQEIGYHQESEHLLAI-----------GRLAVALVLVQLARGDTVAAEKAFKEWGN 460 (535)
Q Consensus 401 l---~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a-----------~rl~la~il~~L~~~D~vaA~~~~e~~~~ 460 (535)
+ ....+...+|+..|+...+.|-...+...+ ++--+.+.-..+..+..++|+.-|+.+..
T Consensus 96 ~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 96 ILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHH
T ss_pred chhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 1 122355678999999988777433221111 11112222346668888888877776433
No 85
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=92.40 E-value=2 Score=38.53 Aligned_cols=95 Identities=15% Similarity=0.077 Sum_probs=67.5
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q psy11025 320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRA 398 (535)
Q Consensus 320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~ka 398 (535)
+.|..|...|...+|...|.+|... .-+......++...+..+...+ +++|+.++++++.-|.+.+ ...+..++.
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~-~~~~l~~f~-- 81 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDE-LNAALRVFL-- 81 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc-ccHHHHHHH--
Confidence 4566677777788888888888653 1234455678888899998876 9999999999988776543 344555553
Q ss_pred HHHHHHhhhHHHHHHHHHHH
Q psy11025 399 ARMCVRVKEFDKAADLIRQE 418 (535)
Q Consensus 399 Ael~e~~~~y~~Aie~ye~~ 418 (535)
|-.+...|++++|++.+...
T Consensus 82 Al~L~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEA 101 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 33455668888888887654
No 86
>KOG2003|consensus
Probab=92.35 E-value=2.4 Score=46.10 Aligned_cols=48 Identities=19% Similarity=0.232 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy11025 368 SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY 421 (535)
Q Consensus 368 ~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~ 421 (535)
.++|++||.+---+ ...-++++.++|.||+.+++..+||++|.++..+
T Consensus 540 ldeald~f~klh~i------l~nn~evl~qianiye~led~aqaie~~~q~~sl 587 (840)
T KOG2003|consen 540 LDEALDCFLKLHAI------LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL 587 (840)
T ss_pred HHHHHHHHHHHHHH------HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc
Confidence 45555555443333 3445678888999999999999999998887543
No 87
>KOG0553|consensus
Probab=92.32 E-value=1.1 Score=46.19 Aligned_cols=94 Identities=18% Similarity=0.129 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCC
Q psy11025 389 KQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ--ESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPE 466 (535)
Q Consensus 389 ~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~--a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~ 466 (535)
..|-++..+-.+++. .++|++|++.|.++..+-- +.=+..+| +..++|..++. |++-.+.- .+.||.
T Consensus 79 ~~AE~LK~eGN~~m~-~~~Y~eAv~kY~~AI~l~P~nAVyycNRA------AAy~~Lg~~~~--AVkDce~A--l~iDp~ 147 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMK-NKDYQEAVDKYTEAIELDPTNAVYYCNRA------AAYSKLGEYED--AVKDCESA--LSIDPH 147 (304)
T ss_pred HHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHhcCCCcchHHHHHH------HHHHHhcchHH--HHHHHHHH--HhcChH
Confidence 344444444445554 4899999999999987652 23233333 24678877776 77776641 112222
Q ss_pred ccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025 467 RCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE 520 (535)
Q Consensus 467 f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~ 520 (535)
+ .|.+...|+.+|+.|+++.|..+|++
T Consensus 148 y---------------------------skay~RLG~A~~~~gk~~~A~~aykK 174 (304)
T KOG0553|consen 148 Y---------------------------SKAYGRLGLAYLALGKYEEAIEAYKK 174 (304)
T ss_pred H---------------------------HHHHHHHHHHHHccCcHHHHHHHHHh
Confidence 1 33446679999999999999999877
No 88
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=92.26 E-value=1.7 Score=41.02 Aligned_cols=81 Identities=23% Similarity=0.073 Sum_probs=54.2
Q ss_pred HhhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCcccccccccccccccc
Q psy11025 404 RVKEFDKAADLIRQEIGYH-QESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKA 482 (535)
Q Consensus 404 ~~~~y~~Aie~ye~~~~~~-~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ 482 (535)
..|+|++|..+|+-...+= ....++.. ..+|+-..++...|+.+|..-.. .+ ..
T Consensus 47 ~~G~l~~A~~~f~~L~~~Dp~~~~y~~g-------LG~~~Q~~g~~~~AI~aY~~A~~--L~----------------~d 101 (157)
T PRK15363 47 EVKEFAGAARLFQLLTIYDAWSFDYWFR-------LGECCQAQKHWGEAIYAYGRAAQ--IK----------------ID 101 (157)
T ss_pred HCCCHHHHHHHHHHHHHhCcccHHHHHH-------HHHHHHHHhhHHHHHHHHHHHHh--cC----------------CC
Confidence 3589999999997764331 11222222 23566667888889999986222 11 11
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025 483 GYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE 520 (535)
Q Consensus 483 ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~ 520 (535)
. .+..+.+|+|+|..||...|+++|+.
T Consensus 102 d-----------p~~~~~ag~c~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 102 A-----------PQAPWAAAECYLACDNVCYAIKALKA 128 (157)
T ss_pred C-----------chHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 13347789999999999999999997
No 89
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=91.73 E-value=4.5 Score=35.50 Aligned_cols=100 Identities=19% Similarity=0.193 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-h
Q psy11025 348 NREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-E 426 (535)
Q Consensus 348 ~~~~AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e 426 (535)
.+..+.-.+..+.-.+...+.++|.++|++++.+.... ...+...|.++...++|.+|+.+|++..+..... .
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 86 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN------SRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPR 86 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChH
Confidence 34433333444444455556999999999998875433 3566788889988999999999999876654322 2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025 427 HLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGN 460 (535)
Q Consensus 427 ~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~ 460 (535)
.+...+ .|+...|+...|...|++.-.
T Consensus 87 ~~~~la-------~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 87 PYFHAA-------ECLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHHH-------HHHHHcCCHHHHHHHHHHHHH
Confidence 222222 456667888889899887444
No 90
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=91.60 E-value=3.1 Score=48.16 Aligned_cols=123 Identities=10% Similarity=-0.010 Sum_probs=70.3
Q ss_pred HHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q psy11025 322 LTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAAR 400 (535)
Q Consensus 322 A~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~kaAe 400 (535)
|++-.+.+.+++|...|..+.+. .|+.++ +...-+.++.+.+ +++|+..++++...- ++.+. .+...|.
T Consensus 93 a~i~~~~g~~~ea~~~l~~~~~~---~Pd~~~-a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-----p~~~~-~~~~~a~ 162 (694)
T PRK15179 93 ARALEAAHRSDEGLAVWRGIHQR---FPDSSE-AFILMLRGVKRQQGIEAGRAEIELYFSGG-----SSSAR-EILLEAK 162 (694)
T ss_pred HHHHHHcCCcHHHHHHHHHHHhh---CCCcHH-HHHHHHHHHHHhccHHHHHHHHHHHhhcC-----CCCHH-HHHHHHH
Confidence 34444444567777777776554 344322 2334455555544 888888888776543 23333 3334455
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025 401 MCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGN 460 (535)
Q Consensus 401 l~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~ 460 (535)
.+.+.|+|++|+++|+++.... .. .....++...+....|+..+|..+|++...
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~-p~-----~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQH-PE-----FENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcC-CC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666788888888888886511 11 011112222345556777778888887443
No 91
>KOG2076|consensus
Probab=91.58 E-value=2.6 Score=49.07 Aligned_cols=79 Identities=20% Similarity=0.218 Sum_probs=56.3
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHH--------------Hhc
Q psy11025 320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELK-SDAALTLYSRAADV--------------AHG 384 (535)
Q Consensus 320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAael--------------y~~ 384 (535)
-=++.|++-|+..++..++..||.+-.++++ ..++.+...++.+ ..+|.-||.+|+.+ |..
T Consensus 178 tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e----~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~ 253 (895)
T KOG2076|consen 178 TLGEIYEQRGDIEKALNFWLLAAHLNPKDYE----LWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQK 253 (895)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCChH----HHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 4567888888888888888888877655543 4677777777765 88888888888764 555
Q ss_pred CCcHHHHHHHHHHHHHHH
Q psy11025 385 EDNYKQAAEYISRAARMC 402 (535)
Q Consensus 385 egr~~~Aa~~l~kaAel~ 402 (535)
.|....|++++.++.++.
T Consensus 254 ~G~~~~Am~~f~~l~~~~ 271 (895)
T KOG2076|consen 254 TGDLKRAMETFLQLLQLD 271 (895)
T ss_pred hChHHHHHHHHHHHHhhC
Confidence 566666666666666544
No 92
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.84 E-value=12 Score=36.66 Aligned_cols=138 Identities=22% Similarity=0.244 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHH
Q psy11025 351 AASTVLEKGAKSLEELKSDAALTLYSRAADVAHGE-DNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLL 429 (535)
Q Consensus 351 ~AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~e-gr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~ 429 (535)
.|+..|.++.+......|+ .+ . +++-|... |+...|.-....+|+-++..+++.+|...++.... ....+.+.
T Consensus 52 ~AS~~Y~~~i~~~~ak~~~-~~---~-~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~-~t~De~lk 125 (207)
T COG2976 52 EASAQYQNAIKAVQAKKPK-SI---A-AAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA-QTKDENLK 125 (207)
T ss_pred HHHHHHHHHHHHHhcCCch-hH---H-HHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc-cchhHHHH
Confidence 4556666666666544441 11 1 22223333 47788888888899989889999999988876632 22344566
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccC
Q psy11025 430 AIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARG 509 (535)
Q Consensus 430 ~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~g 509 (535)
...++-++-+++++..+|. |-+.+..+.+ .+ |..+.- .+. |=++|+.|
T Consensus 126 ~l~~lRLArvq~q~~k~D~--AL~~L~t~~~---------------------~~-------w~~~~~-elr-GDill~kg 173 (207)
T COG2976 126 ALAALRLARVQLQQKKADA--ALKTLDTIKE---------------------ES-------WAAIVA-ELR-GDILLAKG 173 (207)
T ss_pred HHHHHHHHHHHHHhhhHHH--HHHHHhcccc---------------------cc-------HHHHHH-HHh-hhHHHHcC
Confidence 6667777777888888777 7777764211 11 111111 133 67788999
Q ss_pred CHHHHHHHHHH-hcCCCC
Q psy11025 510 DTVAAEKAFKE-WGNCCE 526 (535)
Q Consensus 510 D~V~A~~a~~~-~~~F~~ 526 (535)
|.++|+.+|+. +..+..
T Consensus 174 ~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 174 DKQEARAAYEKALESDAS 191 (207)
T ss_pred chHHHHHHHHHHHHccCC
Confidence 99999999987 444433
No 93
>KOG2047|consensus
Probab=90.76 E-value=4.1 Score=46.14 Aligned_cols=84 Identities=19% Similarity=0.254 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH-HhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH---h
Q psy11025 331 VAHGEDNYKQAAEYISRNREAASTVLEKGAKSL-EELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVR---V 405 (535)
Q Consensus 331 ~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~-ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~---~ 405 (535)
+.+|.+.|++|-+ .+|-..++.+.-+.--+ |+.+ ...|+..|++|+.-.....+.++=+-|.+|+|++|-- .
T Consensus 566 lEraRdLFEqaL~---~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR 642 (835)
T KOG2047|consen 566 LERARDLFEQALD---GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTR 642 (835)
T ss_pred HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccH
Confidence 5678888888765 45555555555444444 4445 6789999999999999999999999999999999942 4
Q ss_pred hhHHHHHHHHHH
Q psy11025 406 KEFDKAADLIRQ 417 (535)
Q Consensus 406 ~~y~~Aie~ye~ 417 (535)
+-|++||+.+-.
T Consensus 643 ~iYekaIe~Lp~ 654 (835)
T KOG2047|consen 643 EIYEKAIESLPD 654 (835)
T ss_pred HHHHHHHHhCCh
Confidence 789999887643
No 94
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.67 E-value=0.57 Score=32.50 Aligned_cols=28 Identities=14% Similarity=0.339 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy11025 394 YISRAARMCVRVKEFDKAADLIRQEIGY 421 (535)
Q Consensus 394 ~l~kaAel~e~~~~y~~Aie~ye~~~~~ 421 (535)
++..+|.++.+.|+|++|+++|+++..+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3678899999999999999999996533
No 95
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=90.64 E-value=5.3 Score=36.01 Aligned_cols=90 Identities=17% Similarity=0.279 Sum_probs=55.0
Q ss_pred hCCHHHHHHHHHHHHHHHhcCC---------------cH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHH
Q psy11025 365 ELKSDAALTLYSRAADVAHGED---------------NY-KQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHL 428 (535)
Q Consensus 365 k~~~~eAie~y~kAaely~~eg---------------r~-~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~ 428 (535)
..++..+++.|.+|+.+|.+.= +. ..-..++.+.++++...++|++|+.++++.....--.+.
T Consensus 19 ~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~- 97 (146)
T PF03704_consen 19 AGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEE- 97 (146)
T ss_dssp TT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HH-
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHH-
Confidence 3457777777777777765431 01 234466677777777789999999999887655433332
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025 429 LAIGRLAVALVLVQLARGDTVAAEKAFKEWGN 460 (535)
Q Consensus 429 ~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~ 460 (535)
+.+. .+.++...|+...|.+.|+++..
T Consensus 98 --~~~~---lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 98 --AYRL---LMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp --HHHH---HHHHHHHTT-HHHHHHHHHHHHH
T ss_pred --HHHH---HHHHHHHCcCHHHHHHHHHHHHH
Confidence 2222 12456678999999999987543
No 96
>KOG2002|consensus
Probab=90.36 E-value=5.2 Score=47.16 Aligned_cols=160 Identities=21% Similarity=0.179 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH----hh--
Q psy11025 353 STVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE----SE-- 426 (535)
Q Consensus 353 A~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a----~e-- 426 (535)
++++..-|.+++..++-.++.+|.+|.++++..++. --.+.+..+|-+.-..|.+++|-+.|.++...... .+
T Consensus 414 ~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~ 492 (1018)
T KOG2002|consen 414 SEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGK 492 (1018)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccc
Confidence 446777788888899888899999999999999987 88899999999999999999999999998766332 11
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCcccccccccc---ccccccc-------hhhhhhhHHHHHH
Q psy11025 427 HLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFS---FSLGKAG-------YHQESEHLLAIGR 496 (535)
Q Consensus 427 ~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l---~~L~l~a-------y~~~~~~~~~~~~ 496 (535)
.....-+.-+|.++=+| ++...|..+|..+-..++++.-|--|-..+. .++ -.+ ......++.+...
T Consensus 493 ~~~lt~~YNlarl~E~l--~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~-~ea~~~lk~~l~~d~~np~arsl 569 (1018)
T KOG2002|consen 493 STNLTLKYNLARLLEEL--HDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNL-YEASLLLKDALNIDSSNPNARSL 569 (1018)
T ss_pred cchhHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCc-HHHHHHHHHHHhcccCCcHHHHH
Confidence 11111222233333344 4555588999887665544322211111000 000 000 0000111222222
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHH
Q psy11025 497 LAVALVLVQLARGDTVAAEKAFKE 520 (535)
Q Consensus 497 l~l~a~lc~L~~gD~V~A~~a~~~ 520 (535)
.|-|||...+.+-|+..++.
T Consensus 570 ----~G~~~l~k~~~~~a~k~f~~ 589 (1018)
T KOG2002|consen 570 ----LGNLHLKKSEWKPAKKKFET 589 (1018)
T ss_pred ----HHHHHHhhhhhcccccHHHH
Confidence 26799999999999997776
No 97
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=90.12 E-value=10 Score=37.48 Aligned_cols=95 Identities=14% Similarity=0.113 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHH-------hcCCcHHHHHHHHHHHH
Q psy11025 331 VAHGEDNYKQAAEYISR---NREAASTVLEKGAKSLEELK-SDAALTLYSRAADVA-------HGEDNYKQAAEYISRAA 399 (535)
Q Consensus 331 ~~eAa~af~kAA~~y~~---~~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely-------~~egr~~~Aa~~l~kaA 399 (535)
+.+|...|.-|.-|+.- .+..-|..+.+.|=+|...+ .+....++.+|.+.| ...+....-..++==+|
T Consensus 93 ~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLig 172 (214)
T PF09986_consen 93 LEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIG 172 (214)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHH
Confidence 67899999999999853 23346788888888887643 444444555555443 22111223345666789
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHh
Q psy11025 400 RMCVRVKEFDKAADLIRQEIGYHQES 425 (535)
Q Consensus 400 el~e~~~~y~~Aie~ye~~~~~~~a~ 425 (535)
+|.-+.|++++|+.+|.++.......
T Consensus 173 eL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 173 ELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999886544443
No 98
>KOG0548|consensus
Probab=89.94 E-value=12 Score=41.63 Aligned_cols=24 Identities=17% Similarity=-0.025 Sum_probs=20.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHH
Q psy11025 497 LAVALVLVQLARGDTVAAEKAFKE 520 (535)
Q Consensus 497 l~l~a~lc~L~~gD~V~A~~a~~~ 520 (535)
.++..+.|+-++.++..|..+|++
T Consensus 428 gy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 428 AYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778999999999999999876
No 99
>KOG0547|consensus
Probab=89.75 E-value=10 Score=41.86 Aligned_cols=20 Identities=15% Similarity=0.287 Sum_probs=11.9
Q ss_pred HHhhhHHHHHHHHHHHHHHH
Q psy11025 403 VRVKEFDKAADLIRQEIGYH 422 (535)
Q Consensus 403 e~~~~y~~Aie~ye~~~~~~ 422 (535)
++.++.++||++||+.+.+-
T Consensus 548 lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 548 LQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred HHHhhHHHHHHHHHHHHHHH
Confidence 34566666666666665443
No 100
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=89.41 E-value=2 Score=44.30 Aligned_cols=127 Identities=17% Similarity=0.194 Sum_probs=73.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH------------HHHH----hhhHHHHHHHHHHHH
Q psy11025 356 LEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAAR------------MCVR----VKEFDKAADLIRQEI 419 (535)
Q Consensus 356 l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAe------------l~e~----~~~y~~Aie~ye~~~ 419 (535)
++.|-+++.+. .-+++.--++.+|...||++.|.+.++++-+ -+.. .+.|.+|.-+|++..
T Consensus 118 ~~~AL~~l~~~---~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~ 194 (290)
T PF04733_consen 118 YEEALKLLHKG---GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELS 194 (290)
T ss_dssp HHHHHCCCTTT---TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHcc---CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 44444444443 2234445566777777777777777766532 1111 347999999999987
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCccccccccccccccccchhhhhhhHHHHHHHHH
Q psy11025 420 GYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAV 499 (535)
Q Consensus 420 ~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l 499 (535)
+.|... ..+...+.+|++..|+...|...+++-- ...-.+++.. .
T Consensus 195 ~~~~~t------~~~lng~A~~~l~~~~~~eAe~~L~~al-------------------------~~~~~~~d~L----a 239 (290)
T PF04733_consen 195 DKFGST------PKLLNGLAVCHLQLGHYEEAEELLEEAL-------------------------EKDPNDPDTL----A 239 (290)
T ss_dssp CCS--S------HHHHHHHHHHHHHCT-HHHHHHHHHHHC-------------------------CC-CCHHHHH----H
T ss_pred hccCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHH-------------------------HhccCCHHHH----H
Confidence 665432 2233344578999999999999987510 0011123332 4
Q ss_pred HHHHHHhccCCH-HHHHHHHHH
Q psy11025 500 ALVLVQLARGDT-VAAEKAFKE 520 (535)
Q Consensus 500 ~a~lc~L~~gD~-V~A~~a~~~ 520 (535)
..++|.+..|+. -.+++.++.
T Consensus 240 Nliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 240 NLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHH
Confidence 458888888888 456666655
No 101
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=89.30 E-value=1.5 Score=34.14 Aligned_cols=58 Identities=12% Similarity=0.158 Sum_probs=41.9
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHH
Q psy11025 320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL--KSDAALTLYSRAADV 381 (535)
Q Consensus 320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~--~~~eAie~y~kAael 381 (535)
.-+.+|.+.+++.+|..+|.+|..+. ++. +.++..-+.++... ++++|+++|++|+++
T Consensus 8 ~~g~~~~~~~~~~~A~~~~~~ai~~~---p~~-~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 8 NLGQIYFQQGDYEEAIEYFEKAIELD---PNN-AEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHS---TTH-HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC---CCC-HHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 34566666777889999999988763 333 33566667777765 388999999998875
No 102
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=89.27 E-value=1.5 Score=33.97 Aligned_cols=56 Identities=18% Similarity=0.254 Sum_probs=41.3
Q ss_pred HHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy11025 363 LEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE 424 (535)
Q Consensus 363 ~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a 424 (535)
++..++++|+++|+++...+-+. .+.....|.++.+.|+|++|.+++++.......
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDN------PEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTS------HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hhccCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 34456889999999998887664 345557888888889999999999887554433
No 103
>KOG1125|consensus
Probab=88.64 E-value=13 Score=41.56 Aligned_cols=43 Identities=16% Similarity=0.119 Sum_probs=24.9
Q ss_pred HHhcCCHH-HHHHHHHHhhhccCCCCccccccccccccccccchhh
Q psy11025 442 QLARGDTV-AAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQ 486 (535)
Q Consensus 442 ~L~~~D~v-aA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~ 486 (535)
.|++++.. .|+.+|.+- ...-|+|...|..+...-+++.+|.+
T Consensus 473 tLAN~~~s~EAIsAY~rA--LqLqP~yVR~RyNlgIS~mNlG~ykE 516 (579)
T KOG1125|consen 473 TLANGNRSEEAISAYNRA--LQLQPGYVRVRYNLGISCMNLGAYKE 516 (579)
T ss_pred HhcCCcccHHHHHHHHHH--HhcCCCeeeeehhhhhhhhhhhhHHH
Confidence 34555542 277777652 22457787788777665555555543
No 104
>KOG1126|consensus
Probab=88.40 E-value=3.7 Score=46.41 Aligned_cols=49 Identities=14% Similarity=0.184 Sum_probs=30.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy11025 401 MCVRVKEFDKAADLIRQEIGYHQE-SEHLLAIGRLAVALVLVQLARGDTVAAEKAFK 456 (535)
Q Consensus 401 l~e~~~~y~~Aie~ye~~~~~~~a-~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e 456 (535)
++-..++|.+|...+|+.-++.-. .-.+...++.+ .++...|. |..-|-
T Consensus 566 il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~-----k~~~~~~~--Al~~f~ 615 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKELVPQESSVFALLGKIY-----KRLGNTDL--ALLHFS 615 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHH-----HHHccchH--HHHhhH
Confidence 444578999999999988666532 23344444443 35666666 655554
No 105
>KOG2076|consensus
Probab=88.25 E-value=1.5 Score=51.04 Aligned_cols=89 Identities=13% Similarity=0.088 Sum_probs=63.9
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q psy11025 320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRA 398 (535)
Q Consensus 320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~ka 398 (535)
+.+++|...+.+.+|.+.|....+--.-. -+-.+.+-|.||...+ .++|+++|+++..+--..- +..-.+
T Consensus 419 d~a~al~~~~~~~~Al~~l~~i~~~~~~~---~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~------D~Ri~L 489 (895)
T KOG2076|consen 419 DLADALTNIGKYKEALRLLSPITNREGYQ---NAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNL------DARITL 489 (895)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhcCcccc---chhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCch------hhhhhH
Confidence 55556666666677777666553321111 1457888899999876 8999999999998854442 345678
Q ss_pred HHHHHHhhhHHHHHHHHHH
Q psy11025 399 ARMCVRVKEFDKAADLIRQ 417 (535)
Q Consensus 399 Ael~e~~~~y~~Aie~ye~ 417 (535)
+.|+.+.|+.++|.++++.
T Consensus 490 asl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 490 ASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred HHHHHhcCCHHHHHHHHhc
Confidence 8899999999999999888
No 106
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=88.14 E-value=4.1 Score=39.48 Aligned_cols=45 Identities=11% Similarity=0.126 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy11025 369 DAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEI 419 (535)
Q Consensus 369 ~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~ 419 (535)
++|.++|.+|...--... ..+...|-.+...|+|++|+..|++..
T Consensus 127 ~~A~~~l~~al~~dP~~~------~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 127 PQTREMIDKALALDANEV------TALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHHHHHhCCCCh------hHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445555555544433331 123333333444455555555555543
No 107
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=88.13 E-value=6.9 Score=37.77 Aligned_cols=19 Identities=16% Similarity=0.170 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHH
Q psy11025 486 QESEHLLAIGRLAVALVLV 504 (535)
Q Consensus 486 ~~~~~~~~~~~l~l~a~lc 504 (535)
..+..|++.|...|..||+
T Consensus 161 ~sd~~ydv~gwvil~~giv 179 (186)
T PF06552_consen 161 SSDFKYDVFGWVILAVGIV 179 (186)
T ss_dssp -------------------
T ss_pred ccchhhhhcchHHHHHHHH
Confidence 4466799999998888776
No 108
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.87 E-value=2.6 Score=42.95 Aligned_cols=103 Identities=17% Similarity=0.163 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Q psy11025 318 PDAALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSL-EELKSDAALTLYSRAADVAHGEDNYKQAAEYIS 396 (535)
Q Consensus 318 ~D~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~-ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~ 396 (535)
|+.|-++|.. +.+..|...|..=..-|=++.- +++++.=-++++ .+.+.++|...|..++.-|-.. ..|-+.+.
T Consensus 145 Y~~A~~~~ks-gdy~~A~~~F~~fi~~YP~s~~-~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s---~KApdall 219 (262)
T COG1729 145 YNAALDLYKS-GDYAEAEQAFQAFIKKYPNSTY-TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS---PKAPDALL 219 (262)
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCcc-cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC---CCChHHHH
Confidence 3344444443 6677787777765555533322 344444445544 5567999999999988866555 66889999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q psy11025 397 RAARMCVRVKEFDKAADLIRQEIGYHQES 425 (535)
Q Consensus 397 kaAel~e~~~~y~~Aie~ye~~~~~~~a~ 425 (535)
|+|.+..+.++-++|+.+|+++.+.|=..
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 99999999999999999999998777544
No 109
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=87.54 E-value=17 Score=38.87 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=20.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHH
Q psy11025 497 LAVALVLVQLARGDTVAAEKAFKE 520 (535)
Q Consensus 497 l~l~a~lc~L~~gD~V~A~~a~~~ 520 (535)
+.+..|-+++..++...|+..|+.
T Consensus 330 l~l~lgrl~~~~~~~~~A~~~le~ 353 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQEASLAFRA 353 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 346778899999999999999998
No 110
>PRK11189 lipoprotein NlpI; Provisional
Probab=87.54 E-value=11 Score=38.69 Aligned_cols=99 Identities=13% Similarity=0.083 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-h
Q psy11025 349 REAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-E 426 (535)
Q Consensus 349 ~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e 426 (535)
+..-+..|..-+.+|... +.++|+..|.+|+++.-.. ...+...|.++...|+|++|++.|+++.++.-.. .
T Consensus 60 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~ 133 (296)
T PRK11189 60 DEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM------ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY 133 (296)
T ss_pred cHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 333345566667777665 4899999999999985443 3567788889999999999999999987654322 1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025 427 HLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGN 460 (535)
Q Consensus 427 ~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~ 460 (535)
.+.+.| ++....|+...|.+.|+++-.
T Consensus 134 a~~~lg-------~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 134 AYLNRG-------IALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HHHHHH-------HHHHHCCCHHHHHHHHHHHHH
Confidence 222222 444556777779999988554
No 111
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=87.33 E-value=24 Score=35.78 Aligned_cols=145 Identities=12% Similarity=0.028 Sum_probs=88.9
Q ss_pred CCHHHHHHHHHHHhc-------hHHHHHHHHHHHHHHHhCHHH-HHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHhcC
Q psy11025 316 LKPDAALTLYSRAAD-------VAHGEDNYKQAAEYISRNREA-ASTVLEKGAKSLEELKS--DAALTLYSRAADVAHGE 385 (535)
Q Consensus 316 ~K~D~AA~lYekAA~-------~~eAa~af~kAA~~y~~~~~~-AA~~l~~AAk~~ek~~~--~eAie~y~kAaely~~e 385 (535)
-|+++|.++..+.|. +.-|++.-.--.++|.+.... --....+.++++....+ .+-..+..+|+.+-...
T Consensus 4 kky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~ 83 (260)
T PF04190_consen 4 KKYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFG 83 (260)
T ss_dssp T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTS
T ss_pred ccHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccC
Confidence 578999999888776 445777777777788764322 12234566666665432 24677888888888333
Q ss_pred CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HH---------HHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q psy11025 386 DNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIG--YH---------QESEHLLAIGRLAVALVLVQLARGDTVAAEKA 454 (535)
Q Consensus 386 gr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~--~~---------~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~ 454 (535)
+...=-.+...-+|+++.+.++|.+|-..|-.-.+ .+ ...+......-...-+|+..|+.+....|...
T Consensus 84 ~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~ 163 (260)
T PF04190_consen 84 SYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANEL 163 (260)
T ss_dssp S-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHH
Confidence 33333458888899999998999988876633211 11 11112223344444467899999999889998
Q ss_pred HHHhhh
Q psy11025 455 FKEWGN 460 (535)
Q Consensus 455 ~e~~~~ 460 (535)
+..|-.
T Consensus 164 ~~~f~~ 169 (260)
T PF04190_consen 164 FDTFTS 169 (260)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
No 112
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=87.23 E-value=12 Score=36.17 Aligned_cols=93 Identities=13% Similarity=0.119 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH-HHHhhh--HHHHHHHHHHHHHHHHHh-hHHH
Q psy11025 355 VLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARM-CVRVKE--FDKAADLIRQEIGYHQES-EHLL 429 (535)
Q Consensus 355 ~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel-~e~~~~--y~~Aie~ye~~~~~~~a~-e~~~ 429 (535)
.+..-+.+|... ++++|+.+|.+|..+.-.. .+.+...|.+ +...++ +.+|.++++++.+..-.. ..+.
T Consensus 75 ~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~------~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~ 148 (198)
T PRK10370 75 QWALLGEYYLWRNDYDNALLAYRQALQLRGEN------AELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALM 148 (198)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHH
Confidence 466667777665 4999999999999987655 3455566664 456566 699999999986554332 2222
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025 430 AIGRLAVALVLVQLARGDTVAAEKAFKEWGN 460 (535)
Q Consensus 430 ~a~rl~la~il~~L~~~D~vaA~~~~e~~~~ 460 (535)
..+ .+.+..||...|+..|++.-.
T Consensus 149 ~LA-------~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 149 LLA-------SDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHH-------HHHHHcCCHHHHHHHHHHHHh
Confidence 222 445667888889999998443
No 113
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=86.92 E-value=10 Score=44.46 Aligned_cols=93 Identities=13% Similarity=0.047 Sum_probs=66.2
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q psy11025 320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEE-LKSDAALTLYSRAADVAHGEDNYKQAAEYISRA 398 (535)
Q Consensus 320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek-~~~~eAie~y~kAaely~~egr~~~Aa~~l~ka 398 (535)
..|.+|.+.+++.+|..+|.++....-.++. ++...+.++.. .++++|+.++++++..+-... . +...
T Consensus 54 ~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~----a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~-----~--~~~l 122 (765)
T PRK10049 54 AVAVAYRNLKQWQNSLTLWQKALSLEPQNDD----YQRGLILTLADAGQYDEALVKAKQLVSGAPDKA-----N--LLAL 122 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----H--HHHH
Confidence 5677777888888888888887765322322 23344555544 459999999999998855442 2 4456
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHH
Q psy11025 399 ARMCVRVKEFDKAADLIRQEIGYHQ 423 (535)
Q Consensus 399 Ael~e~~~~y~~Aie~ye~~~~~~~ 423 (535)
|.++...+++++|+..|+++.+..-
T Consensus 123 a~~l~~~g~~~~Al~~l~~al~~~P 147 (765)
T PRK10049 123 AYVYKRAGRHWDELRAMTQALPRAP 147 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 8888888999999999999876653
No 114
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=86.61 E-value=57 Score=37.18 Aligned_cols=172 Identities=13% Similarity=0.117 Sum_probs=96.9
Q ss_pred HHhchHHHHHHHHHHHHHHHhCH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH-HHH
Q psy11025 327 RAADVAHGEDNYKQAAEYISRNR----EAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRA-ARM 401 (535)
Q Consensus 327 kAA~~~eAa~af~kAA~~y~~~~----~~AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~ka-Ael 401 (535)
.--|.++|-....||...-.+.. ...+.++- ++++++.++..|.....++++.+...+. ..-.-++.=+ +.+
T Consensus 72 eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll--~~i~~~~~~~~a~~~l~~~I~~~~~~~~-~~w~~~frll~~~l 148 (608)
T PF10345_consen 72 ETENLDLAETYLEKAILLCERHRLTDLKFRCQFLL--ARIYFKTNPKAALKNLDKAIEDSETYGH-SAWYYAFRLLKIQL 148 (608)
T ss_pred HcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHH--HHHHHhcCHHHHHHHHHHHHHHHhccCc-hhHHHHHHHHHHHH
Confidence 33357788888888876654421 12343333 8999999988899999999999998652 2222222222 333
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCccccccccccccc
Q psy11025 402 CVRVKEFDKAADLIRQEIGYHQESE--HLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSL 479 (535)
Q Consensus 402 ~e~~~~y~~Aie~ye~~~~~~~a~e--~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L 479 (535)
....+++..|++.++.....-...+ .....+.+ ...+++|..+....+.+.++..........+..+.
T Consensus 149 ~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l--~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~-------- 218 (608)
T PF10345_consen 149 ALQHKDYNAALENLQSIAQLANQRGDPAVFVLASL--SEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSV-------- 218 (608)
T ss_pred HHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHH--HHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCC--------
Confidence 3333799999999999887665322 22222322 23355666553433444444321100110000000
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025 480 GKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE 520 (535)
Q Consensus 480 ~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~ 520 (535)
...+.. +-. .+--+.|.|+.||+-.+...+..
T Consensus 219 -------~~~qL~-~~~-lll~l~~~l~~~~~~~~~~~L~~ 250 (608)
T PF10345_consen 219 -------HIPQLK-ALF-LLLDLCCSLQQGDVKNSKQKLKQ 250 (608)
T ss_pred -------CcHHHH-HHH-HHHHHHHHHHcCCHHHHHHHHHH
Confidence 001112 112 24448899999998888888765
No 115
>KOG0543|consensus
Probab=86.46 E-value=10 Score=40.84 Aligned_cols=61 Identities=18% Similarity=0.217 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025 393 EYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGN 460 (535)
Q Consensus 393 ~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~ 460 (535)
.|+.++|-.+.+++.|..|++.+.++...=... ..+..-|+. +|..+|+..|+..|++...
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A-------~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQA-------LLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHH-------HHhhccHHHHHHHHHHHHH
Confidence 456666666777778888887777765443221 223333433 4445666667777777554
No 116
>KOG0687|consensus
Probab=86.39 E-value=24 Score=37.17 Aligned_cols=110 Identities=15% Similarity=0.108 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCC
Q psy11025 389 KQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE----HLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEA 464 (535)
Q Consensus 389 ~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e----~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~ 464 (535)
....+...+.|+.|++.++-+.|.+.+.+.-+.--+.+ ...-..|+ ++..+ |..-..+.+++
T Consensus 101 ~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRl----glfy~---D~~lV~~~iek------- 166 (393)
T KOG0687|consen 101 SEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRL----GLFYL---DHDLVTESIEK------- 166 (393)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHH----HHhhc---cHHHHHHHHHH-------
Confidence 56677888999999999999999999887654443332 23322222 22232 33223344443
Q ss_pred CCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH-hcCCCCch
Q psy11025 465 PERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE-WGNCCEAP 528 (535)
Q Consensus 465 ~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~-~~~F~~s~ 528 (535)
.+.+.++-++|+-.+++=.-.||-+++.-|.-+|..-|-+ +|+|..++
T Consensus 167 ----------------ak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~E 215 (393)
T KOG0687|consen 167 ----------------AKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTSYE 215 (393)
T ss_pred ----------------HHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHccccccee
Confidence 3344455667888888877789999999999999999888 59998764
No 117
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=86.32 E-value=1.5 Score=33.82 Aligned_cols=57 Identities=18% Similarity=0.175 Sum_probs=41.1
Q ss_pred HHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHH
Q psy11025 322 LTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVA 382 (535)
Q Consensus 322 A~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely 382 (535)
+..|.+.+++.+|..+|.++...+ |+ ...++..-+.++... ++++|+.+|+++++..
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~---P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD---PD-NPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS---TT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 566777788888888888876544 33 344566667777665 4999999999998764
No 118
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.19 E-value=19 Score=35.24 Aligned_cols=93 Identities=23% Similarity=0.167 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy11025 355 VLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRL 434 (535)
Q Consensus 355 ~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl 434 (535)
+|+-|-..++..+.++|..-++.+...-.++ .--+=.-.++|++..+.+.|++|..++....+.-=..-....-|.+
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De---~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDi 168 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDE---NLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDI 168 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhH---HHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhH
Confidence 3444445556667899998888776554443 2222334578888999999999999997764321111122223333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q psy11025 435 AVALVLVQLARGDTVAAEKAFKE 457 (535)
Q Consensus 435 ~la~il~~L~~~D~vaA~~~~e~ 457 (535)
.+..||.++|+..|++
T Consensus 169 -------ll~kg~k~~Ar~ay~k 184 (207)
T COG2976 169 -------LLAKGDKQEARAAYEK 184 (207)
T ss_pred -------HHHcCchHHHHHHHHH
Confidence 4567999999999987
No 119
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.81 E-value=3.8 Score=41.78 Aligned_cols=96 Identities=10% Similarity=0.075 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH----hhHHHH
Q psy11025 355 VLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE----SEHLLA 430 (535)
Q Consensus 355 ~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a----~e~~~~ 430 (535)
.|.-|.++|+..+..+|.+.|..=++-|-..-. +.+.+==.++.+-..|+|++|+.+|....+-|-. -+.+.+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~---~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY---TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc---cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 577777788887888899889888888877743 3344445567777789999999999998775532 234444
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025 431 IGRLAVALVLVQLARGDTVAAEKAFKEWGN 460 (535)
Q Consensus 431 a~rl~la~il~~L~~~D~vaA~~~~e~~~~ 460 (535)
.+ .++..|.+-| .|...|+++..
T Consensus 221 lg-----~~~~~l~~~d--~A~atl~qv~k 243 (262)
T COG1729 221 LG-----VSLGRLGNTD--EACATLQQVIK 243 (262)
T ss_pred HH-----HHHHHhcCHH--HHHHHHHHHHH
Confidence 44 3355555444 49899988655
No 120
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=85.56 E-value=15 Score=31.04 Aligned_cols=70 Identities=19% Similarity=0.171 Sum_probs=56.2
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q psy11025 356 LEKGAKSLEELKSDAALTLYSRAADVAHGEDNYK---QAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES 425 (535)
Q Consensus 356 l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~---~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~ 425 (535)
|..-.+.+...|..+|++.+.+..+.....+... .-.-.+...|.+....|.+++|++.++++.++....
T Consensus 2 ~l~~~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 2 YLRYLNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 4555677778889999999999999987776544 444557778888888999999999999998877654
No 121
>KOG1173|consensus
Probab=85.55 E-value=17 Score=40.82 Aligned_cols=134 Identities=16% Similarity=0.176 Sum_probs=82.2
Q ss_pred CHHHHHHHHHHHhc---------------------hHHHHHHHHHHHHHHHhCH----------------HHHHHHHHHH
Q psy11025 317 KPDAALTLYSRAAD---------------------VAHGEDNYKQAAEYISRNR----------------EAASTVLEKG 359 (535)
Q Consensus 317 K~D~AA~lYekAA~---------------------~~eAa~af~kAA~~y~~~~----------------~~AA~~l~~A 359 (535)
|+++|-.+|-||-. .+.|..||-.|+.....+. .-|-+.|.+|
T Consensus 327 k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A 406 (611)
T KOG1173|consen 327 KYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQA 406 (611)
T ss_pred CcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHH
Confidence 77899999999875 2467777777777654421 1133333333
Q ss_pred HHHHH---------------hCCHHHHHHHHHHHHHHHhcCCcHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy11025 360 AKSLE---------------ELKSDAALTLYSRAADVAHGEDNYK-QAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ 423 (535)
Q Consensus 360 Ak~~e---------------k~~~~eAie~y~kAaely~~egr~~-~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~ 423 (535)
-.+.- .....+|+.+++.|.+....-+... .=.-.+..+|.++.+++.|++||..|+++..+..
T Consensus 407 ~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~ 486 (611)
T KOG1173|consen 407 LAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP 486 (611)
T ss_pred HhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 32221 1235677777777775543333211 2344577888899999999999999999876654
Q ss_pred Hh-hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy11025 424 ES-EHLLAIGRLAVALVLVQLARGDTVAAEKAFKE 457 (535)
Q Consensus 424 a~-e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~ 457 (535)
.. ..+...| .|++..|....|+..|.+
T Consensus 487 k~~~~~asig-------~iy~llgnld~Aid~fhK 514 (611)
T KOG1173|consen 487 KDASTHASIG-------YIYHLLGNLDKAIDHFHK 514 (611)
T ss_pred CchhHHHHHH-------HHHHHhcChHHHHHHHHH
Confidence 32 2333333 445455555558888876
No 122
>KOG0547|consensus
Probab=85.06 E-value=14 Score=40.90 Aligned_cols=82 Identities=15% Similarity=0.186 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHH
Q psy11025 332 AHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKA 411 (535)
Q Consensus 332 ~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~A 411 (535)
.+|..-|.+|..+ .|..+--....+.-.|+....++++..|+.+..-|- ...+++.=.|+++...++|.+|
T Consensus 411 e~A~aDF~Kai~L---~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP------~~~Evy~~fAeiLtDqqqFd~A 481 (606)
T KOG0547|consen 411 EEAIADFQKAISL---DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFP------NCPEVYNLFAEILTDQQQFDKA 481 (606)
T ss_pred HHHHHHHHHHhhc---ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------CCchHHHHHHHHHhhHHhHHHH
Confidence 3444444444332 233333333344444444445555555555554332 3345666667777777888888
Q ss_pred HHHHHHHHHHH
Q psy11025 412 ADLIRQEIGYH 422 (535)
Q Consensus 412 ie~ye~~~~~~ 422 (535)
++.|..+.++-
T Consensus 482 ~k~YD~ai~LE 492 (606)
T KOG0547|consen 482 VKQYDKAIELE 492 (606)
T ss_pred HHHHHHHHhhc
Confidence 88888877653
No 123
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=84.83 E-value=9.5 Score=31.54 Aligned_cols=58 Identities=14% Similarity=0.067 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC-----CcHHHHHHHHHHHHHHHHHhhhHH
Q psy11025 352 ASTVLEKGAKSLEELKSDAALTLYSRAADVAHGE-----DNYKQAAEYISRAARMCVRVKEFD 409 (535)
Q Consensus 352 AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~e-----gr~~~Aa~~l~kaAel~e~~~~y~ 409 (535)
|.....+|.++=+..+.++|+.+|.+|+++|..- -....-.....|+.+.+.+.+...
T Consensus 6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~ir~K~~eYl~RAE~Lk 68 (76)
T cd02681 6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTIQEKSNEYLDRAQALH 68 (76)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555567889999999999987652 222333334666666666554443
No 124
>KOG0543|consensus
Probab=84.60 E-value=12 Score=40.33 Aligned_cols=22 Identities=23% Similarity=0.152 Sum_probs=18.3
Q ss_pred HHHHHHHhccCCHHHHHHHHHH
Q psy11025 499 VALVLVQLARGDTVAAEKAFKE 520 (535)
Q Consensus 499 l~a~lc~L~~gD~V~A~~a~~~ 520 (535)
+.-|-++|..||+-.|+..|++
T Consensus 295 yRrG~A~l~~~e~~~A~~df~k 316 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQK 316 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHH
Confidence 6668888888898888888876
No 125
>PRK14574 hmsH outer membrane protein; Provisional
Probab=84.42 E-value=21 Score=42.35 Aligned_cols=115 Identities=17% Similarity=0.156 Sum_probs=68.7
Q ss_pred HHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Q psy11025 327 RAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEE-LKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRV 405 (535)
Q Consensus 327 kAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek-~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~ 405 (535)
+.|++..|.+.|.++-... |..++..+ ..+.++-. .+.++|+.++++|+ ..+ ......+.-+|.++...
T Consensus 46 r~Gd~~~Al~~L~qaL~~~---P~~~~av~-dll~l~~~~G~~~~A~~~~eka~---~p~---n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAG---PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ---SSM---NISSRGLASAARAYRNE 115 (822)
T ss_pred hCCCHHHHHHHHHHHHhhC---ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc---cCC---CCCHHHHHHHHHHHHHc
Confidence 3477888888888876554 33221112 33344433 34789999999998 111 12223444457788888
Q ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy11025 406 KEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE 457 (535)
Q Consensus 406 ~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~ 457 (535)
++|.+|+++|+++.+..-....... .+ +++.+..+....|...+++
T Consensus 116 gdyd~Aiely~kaL~~dP~n~~~l~----gL--a~~y~~~~q~~eAl~~l~~ 161 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPTNPDLIS----GM--IMTQADAGRGGVVLKQATE 161 (822)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHH----HH--HHHHhhcCCHHHHHHHHHH
Confidence 9999999999998766543321111 11 2344445566557777765
No 126
>PRK15331 chaperone protein SicA; Provisional
Probab=84.19 E-value=12 Score=35.61 Aligned_cols=98 Identities=17% Similarity=0.204 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-hHH
Q psy11025 350 EAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES-EHL 428 (535)
Q Consensus 350 ~~AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~-e~~ 428 (535)
++=-..|..|-+.|...+.++|..+|.--+-+=... .+++.-.|-.+-..+.|++|++.|..+.-+-... ..+
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n------~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~ 108 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYN------PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV 108 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc
Confidence 333456888888999888999998888655542222 2366777778878899999999998876543211 113
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025 429 LAIGRLAVALVLVQLARGDTVAAEKAFKEWGN 460 (535)
Q Consensus 429 ~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~ 460 (535)
.-++ .|+|..++...|..+|+.+..
T Consensus 109 f~ag-------qC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 109 FFTG-------QCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred chHH-------HHHHHhCCHHHHHHHHHHHHh
Confidence 3333 778889999999999987544
No 127
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=83.32 E-value=13 Score=39.91 Aligned_cols=116 Identities=16% Similarity=0.096 Sum_probs=70.2
Q ss_pred hchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhh
Q psy11025 329 ADVAHGEDNYKQAAEYISRNREAASTVLEKGAKS-LEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKE 407 (535)
Q Consensus 329 A~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~-~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~ 407 (535)
|+|.+|.++..++.+. .+...-.|.-+|.+ ....+++.|.++|.+|.+...+. ..+.. ...++++...++
T Consensus 98 Gd~~~A~k~l~~~~~~----~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~---~~~~~--l~~a~l~l~~g~ 168 (398)
T PRK10747 98 GDYQQVEKLMTRNADH----AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADND---QLPVE--ITRVRIQLARNE 168 (398)
T ss_pred CCHHHHHHHHHHHHhc----ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcc---hHHHH--HHHHHHHHHCCC
Confidence 5577777666655442 11233446677777 66667999999999998644333 22222 234888888999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q psy11025 408 FDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWG 459 (535)
Q Consensus 408 y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~ 459 (535)
|++|.+.+++..+..-... .+.++. ..+++..||...|...+....
T Consensus 169 ~~~Al~~l~~~~~~~P~~~---~al~ll---~~~~~~~gdw~~a~~~l~~l~ 214 (398)
T PRK10747 169 NHAARHGVDKLLEVAPRHP---EVLRLA---EQAYIRTGAWSSLLDILPSMA 214 (398)
T ss_pred HHHHHHHHHHHHhcCCCCH---HHHHHH---HHHHHHHHhHHHHHHHHHHHH
Confidence 9999999988755442221 111111 123445577777776666544
No 128
>PLN03218 maturation of RBCL 1; Provisional
Probab=83.11 E-value=67 Score=39.33 Aligned_cols=41 Identities=10% Similarity=0.223 Sum_probs=23.5
Q ss_pred HHHHhcCCcHHHHHHHHHHHH-----------------HHHHHhhhHHHHHHHHHHHH
Q psy11025 379 ADVAHGEDNYKQAAEYISRAA-----------------RMCVRVKEFDKAADLIRQEI 419 (535)
Q Consensus 379 aely~~egr~~~Aa~~l~kaA-----------------el~e~~~~y~~Aie~ye~~~ 419 (535)
+..|...|+...|.+.+.++- ..|.+.|++++|.++|+...
T Consensus 549 I~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 549 ISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444555566666655555442 23455667777777776653
No 129
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=82.92 E-value=17 Score=32.67 Aligned_cols=92 Identities=20% Similarity=0.130 Sum_probs=59.9
Q ss_pred HHHhchHHHHHHHHHHHHHHHhC--------H----------HHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCC
Q psy11025 326 SRAADVAHGEDNYKQAAEYISRN--------R----------EAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGED 386 (535)
Q Consensus 326 ekAA~~~eAa~af~kAA~~y~~~--------~----------~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~eg 386 (535)
..++....+...+.+|..+|... . ..-..++.+.+..+... ++++|+.++.+++.+.--.+
T Consensus 17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E 96 (146)
T PF03704_consen 17 ARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPYDE 96 (146)
T ss_dssp HHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCH
Confidence 33445778888888888888531 1 11244555666655544 48999999999988865543
Q ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy11025 387 NYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ 423 (535)
Q Consensus 387 r~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~ 423 (535)
..+....+++...|++..|++.|++..+.+.
T Consensus 97 ------~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~ 127 (146)
T PF03704_consen 97 ------EAYRLLMRALAAQGRRAEALRVYERYRRRLR 127 (146)
T ss_dssp ------HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 2455566677888999999999999876654
No 130
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=82.75 E-value=20 Score=42.80 Aligned_cols=73 Identities=14% Similarity=0.214 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy11025 355 VLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGR 433 (535)
Q Consensus 355 ~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~r 433 (535)
+|..-|.||++++ .++|...|+++.++--.. +.++.++|-.+... +.++|.++|.++...+....++..+-.
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n------~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e 190 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDN------PEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEE 190 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHH
Confidence 4666677777665 777777777777664221 34666777666666 777777777777666655555555544
Q ss_pred H
Q psy11025 434 L 434 (535)
Q Consensus 434 l 434 (535)
+
T Consensus 191 ~ 191 (906)
T PRK14720 191 I 191 (906)
T ss_pred H
Confidence 3
No 131
>KOG0548|consensus
Probab=82.54 E-value=19 Score=40.01 Aligned_cols=52 Identities=17% Similarity=0.186 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHH
Q psy11025 352 ASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDN-YKQAAEYISRAARMCV 403 (535)
Q Consensus 352 AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr-~~~Aa~~l~kaAel~e 403 (535)
|.....+.-.++...++..||..|.+|+..=-.+.+ +...+-|+.+.+.+-+
T Consensus 358 A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~ 410 (539)
T KOG0548|consen 358 AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPE 410 (539)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHH
Confidence 344444444555666777888888887776544432 2333344444444333
No 132
>PF02071 NSF: Aromatic-di-Alanine (AdAR) repeat ; InterPro: IPR000744 Regulated exocytosis of neurotransmitters and hormones, as well as intracellular traffic, requires fusion of two lipid bilayers. SNARE proteins are thought to form a protein bridge, the SNARE complex, between an incoming vesicle and the acceptor compartment. SNARE proteins contribute to the specificity of membrane fusion, implying that the mechanisms by which SNAREs are targeted to subcellular compartments are important for specific docking and fusion of vesicles. This mechanism involves a family of conserved proteins, members of which appear to function at all sites of constitutive and regulated secretion in eukaryotes []. Among them are 2 types of cytosolic protein, NSF (N-ethyl-maleimide-sensitive protein) and the SNAPs (alpha-, beta- and gamma-soluble NSF attachment proteins). The yeast vesicular fusion protein, sec17, a cytoplasmic peripheral membrane protein involved in vesicular transport between the endoplasmic reticulum and the golgi apparatus, shows a high degree of sequence similarity to the alpha-SNAP family. SNAP-25 and its non-neuronal homologue Syndet/SNAP-23 are synthesized as soluble proteins in the cytosol. Both SNAP-25 and Syndet/SNAP-23 are palmitoylated at cysteine residues clustered in a loop between two N- and C-terminal coils and palmitoylation is essential for membrane binding and plasma membrane targeting. The C-terminal and the N-terminal helices of SNAP-25, are each targeted to the plasma membrane by two distinct cysteine-rich domains and appear to regulate the availability of SNAP to form complexes with SNARE [].; GO: 0006886 intracellular protein transport
Probab=81.97 E-value=0.54 Score=25.30 Aligned_cols=10 Identities=40% Similarity=0.481 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q psy11025 335 EDNYKQAAEY 344 (535)
Q Consensus 335 a~af~kAA~~ 344 (535)
+++|++|++|
T Consensus 2 ~~~y~~Aa~~ 11 (12)
T PF02071_consen 2 IKCYEKAAEC 11 (12)
T ss_pred cHHHHHHHhh
Confidence 3444444444
No 133
>KOG4234|consensus
Probab=81.88 E-value=11 Score=37.26 Aligned_cols=86 Identities=15% Similarity=0.222 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHHHHHhCH-HHHHHHHH-HHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhH
Q psy11025 331 VAHGEDNYKQAAEYISRNR-EAASTVLE-KGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEF 408 (535)
Q Consensus 331 ~~eAa~af~kAA~~y~~~~-~~AA~~l~-~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y 408 (535)
+.+|..-|..|.++.-... ..-+-+|- +||-.++-...+.||+--.+|+++--.- .+.+.+-|++|++.+.|
T Consensus 111 yeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty------~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 111 YEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY------EKALERRAEAYEKMEKY 184 (271)
T ss_pred HHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh------HHHHHHHHHHHHhhhhH
Confidence 5567777777766543222 22333444 4444444445889999999999884332 24566889999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy11025 409 DKAADLIRQEIGYH 422 (535)
Q Consensus 409 ~~Aie~ye~~~~~~ 422 (535)
++|++=|.+..+.-
T Consensus 185 eealeDyKki~E~d 198 (271)
T KOG4234|consen 185 EEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999876553
No 134
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=81.67 E-value=5.6 Score=31.09 Aligned_cols=49 Identities=16% Similarity=0.291 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy11025 366 LKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIG 420 (535)
Q Consensus 366 ~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~ 420 (535)
.++++|++++++++.+.-.. ...+...|.++...|+|.+|++.|++..+
T Consensus 9 ~~~~~A~~~~~~~l~~~p~~------~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 9 EDYEEALEVLERALELDPDD------PELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred CCHHHHHHHHHHHHHhCccc------chhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34667777777777664432 33455566666666777777777766643
No 135
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=81.64 E-value=44 Score=34.82 Aligned_cols=130 Identities=11% Similarity=0.112 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHh
Q psy11025 369 DAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE----SEHLLAIGRLAVALVLVQLA 444 (535)
Q Consensus 369 ~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a----~e~~~~a~rl~la~il~~L~ 444 (535)
++-++=+.++++=-+..+--...++...++|+.|.+..+.+.+.+++.+..+.-.. .+.+....|+. +-
T Consensus 92 eeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg-------~~ 164 (412)
T COG5187 92 EEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLG-------LI 164 (412)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHH-------Hh
Confidence 44455555555544444335778899999999999999999999988776433222 33444444331 12
Q ss_pred cCCHHHHHHHHHHhhhccCCCCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH-hcC
Q psy11025 445 RGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE-WGN 523 (535)
Q Consensus 445 ~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~-~~~ 523 (535)
-+|.--..+.+|. +..+.+.-++++-.++.-.-.|+-+|..-..-.|..-|-+ +|+
T Consensus 165 y~d~~vV~e~lE~-----------------------~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 165 YGDRKVVEESLEV-----------------------ADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred hccHHHHHHHHHH-----------------------HHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 3454334444443 2233344456777777666678999988889999998888 499
Q ss_pred CCCch
Q psy11025 524 CCEAP 528 (535)
Q Consensus 524 F~~s~ 528 (535)
|..++
T Consensus 222 F~S~E 226 (412)
T COG5187 222 FESSE 226 (412)
T ss_pred ccccc
Confidence 98875
No 136
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=81.41 E-value=17 Score=43.28 Aligned_cols=76 Identities=17% Similarity=0.165 Sum_probs=58.1
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q psy11025 321 ALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAAR 400 (535)
Q Consensus 321 AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAe 400 (535)
=|.||.+.+++.+|-.+|+++...--++ +.++..-|-.|.+.+.++|.++|.+|+..|-...+++.+-+...++-+
T Consensus 122 LA~~Ydk~g~~~ka~~~yer~L~~D~~n----~~aLNn~AY~~ae~dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~ 197 (906)
T PRK14720 122 LAEAYAKLNENKKLKGVWERLVKADRDN----PEIVKKLATSYEEEDKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVH 197 (906)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHh
Confidence 4788888888889999888877654222 234555566666558999999999999999888888888887777665
No 137
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=81.31 E-value=26 Score=39.31 Aligned_cols=131 Identities=18% Similarity=0.127 Sum_probs=86.7
Q ss_pred HHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHH-HH
Q psy11025 357 EKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIG-RL 434 (535)
Q Consensus 357 ~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~-rl 434 (535)
.=.|.+|... +.++|+++..+|++.= -+..+++.-=|+|+-..|++.+|++.++.+..+=.+.-+.+..+ +.
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~ht------Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy 271 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHT------PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKY 271 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHH
Confidence 3345555443 4788888888888773 22356777778889889999999999988876655555554443 33
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHH
Q psy11025 435 AVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAA 514 (535)
Q Consensus 435 ~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A 514 (535)
.|..|+...|.+.+..|.+ .+ . ....+| .+.. |....+..|.+|+..||+..|
T Consensus 272 -------~LRa~~~e~A~~~~~~Ftr--~~-------~-~~~~~L---------~~mQ-c~Wf~~e~a~a~~r~~~~~~A 324 (517)
T PF12569_consen 272 -------LLRAGRIEEAEKTASLFTR--ED-------V-DPLSNL---------NDMQ-CMWFETECAEAYLRQGDYGLA 324 (517)
T ss_pred -------HHHCCCHHHHHHHHHhhcC--CC-------C-CcccCH---------HHHH-HHHHHHHHHHHHHHHhhHHHH
Confidence 4566777778888877644 11 0 112222 0111 234448889999999999999
Q ss_pred HHHHHH
Q psy11025 515 EKAFKE 520 (535)
Q Consensus 515 ~~a~~~ 520 (535)
-+.+..
T Consensus 325 Lk~~~~ 330 (517)
T PF12569_consen 325 LKRFHA 330 (517)
T ss_pred HHHHHH
Confidence 887754
No 138
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=81.02 E-value=13 Score=34.45 Aligned_cols=65 Identities=15% Similarity=0.090 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025 392 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGN 460 (535)
Q Consensus 392 a~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~ 460 (535)
.+++.++-+.+. .++|.+|++.|+.....|-..++..++ .+. ++-++...++...|...+++|.+
T Consensus 11 ~~ly~~a~~~l~-~~~Y~~A~~~le~L~~ryP~g~ya~qA-qL~--l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 11 QELYQEAQEALQ-KGNYEEAIKQLEALDTRYPFGEYAEQA-QLD--LAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHHHHHHHHHHH-hCCHHHHHHHHHHHHhcCCCCcccHHH-HHH--HHHHHHHccCHHHHHHHHHHHHH
Confidence 344444444443 489999999998887777655554433 222 23567778888889899998877
No 139
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=80.82 E-value=6.2 Score=43.17 Aligned_cols=64 Identities=14% Similarity=0.019 Sum_probs=44.1
Q ss_pred CCHHHHHHHHH------HHhchHHHHHHHHHHHHHHHhCHHH--HHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHH
Q psy11025 316 LKPDAALTLYS------RAADVAHGEDNYKQAAEYISRNREA--ASTVLEKGAKSLEELK-SDAALTLYSRAADVA 382 (535)
Q Consensus 316 ~K~D~AA~lYe------kAA~~~eAa~af~kAA~~y~~~~~~--AA~~l~~AAk~~ek~~-~~eAie~y~kAaely 382 (535)
-.|+.+..++. +.+.+++|..+|.+|... +|+. |..+|..-|-+|.... .++|+++|++|++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 35554444444 445578888888888765 3433 3355666677777764 999999999999983
No 140
>KOG1920|consensus
Probab=80.73 E-value=19 Score=43.54 Aligned_cols=27 Identities=22% Similarity=0.462 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHHhchHHHHHHHHHHHH
Q psy11025 317 KPDAALTLYSRAADVAHGEDNYKQAAE 343 (535)
Q Consensus 317 K~D~AA~lYekAA~~~eAa~af~kAA~ 343 (535)
++|+||-.|+++|+..+|..+|..+.+
T Consensus 954 ~~~~Aal~Ye~~GklekAl~a~~~~~d 980 (1265)
T KOG1920|consen 954 MSDEAALMYERCGKLEKALKAYKECGD 980 (1265)
T ss_pred cccHHHHHHHHhccHHHHHHHHHHhcc
Confidence 558999999999999999999866543
No 141
>KOG2002|consensus
Probab=80.69 E-value=41 Score=40.06 Aligned_cols=89 Identities=17% Similarity=0.151 Sum_probs=49.7
Q ss_pred HHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy11025 363 LEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQ 442 (535)
Q Consensus 363 ~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~ 442 (535)
|.+.+...+..++..|+..-... ..-++.+=..|+.+-..|+|++|..+|.+....-...-.+...| ++.++
T Consensus 281 yfK~dy~~v~~la~~ai~~t~~~---~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G-----lgQm~ 352 (1018)
T KOG2002|consen 281 YFKKDYERVWHLAEHAIKNTENK---SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG-----LGQMY 352 (1018)
T ss_pred hhcccHHHHHHHHHHHHHhhhhh---HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc-----hhHHH
Confidence 34556677777777666553221 33334444566777777777777777766543222221111111 23456
Q ss_pred HhcCCHHHHHHHHHHhh
Q psy11025 443 LARGDTVAAEKAFKEWG 459 (535)
Q Consensus 443 L~~~D~vaA~~~~e~~~ 459 (535)
+..||.-.|+.+|+++-
T Consensus 353 i~~~dle~s~~~fEkv~ 369 (1018)
T KOG2002|consen 353 IKRGDLEESKFCFEKVL 369 (1018)
T ss_pred HHhchHHHHHHHHHHHH
Confidence 66777777777777643
No 142
>KOG1130|consensus
Probab=79.38 E-value=58 Score=35.58 Aligned_cols=69 Identities=16% Similarity=0.078 Sum_probs=48.6
Q ss_pred HHHHHHHHHHh-CCHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy11025 355 VLEKGAKSLEE-LKSDAALTLYSRAADVAHGE-DNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE 424 (535)
Q Consensus 355 ~l~~AAk~~ek-~~~~eAie~y~kAaely~~e-gr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a 424 (535)
++...++|+-= .+++.|+++|+++..+-.+- +|...|-.||. .+.-|--.+.|++||++..+-..+-+.
T Consensus 237 A~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYS-LgNtytll~e~~kAI~Yh~rHLaIAqe 307 (639)
T KOG1130|consen 237 AHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYS-LGNTYTLLKEVQKAITYHQRHLAIAQE 307 (639)
T ss_pred hhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566553 35899999999999995444 45566666664 555666678999999999887655444
No 143
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=79.37 E-value=36 Score=39.19 Aligned_cols=42 Identities=10% Similarity=-0.124 Sum_probs=29.4
Q ss_pred HHHHHhcCCcHHHHHHHHH-----------HHHHHHHHhhhHHHHHHHHHHHH
Q psy11025 378 AADVAHGEDNYKQAAEYIS-----------RAARMCVRVKEFDKAADLIRQEI 419 (535)
Q Consensus 378 Aaely~~egr~~~Aa~~l~-----------kaAel~e~~~~y~~Aie~ye~~~ 419 (535)
-+++|...|+...|.+.+. -+...|.+.|++++|.++|++..
T Consensus 265 Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 265 LIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3556666666666666665 45556777889999999887763
No 144
>PLN03218 maturation of RBCL 1; Provisional
Probab=79.26 E-value=57 Score=39.93 Aligned_cols=17 Identities=6% Similarity=0.061 Sum_probs=11.9
Q ss_pred HHhccCCHHHHHHHHHH
Q psy11025 504 VQLARGDTVAAEKAFKE 520 (535)
Q Consensus 504 c~L~~gD~V~A~~a~~~ 520 (535)
.+...|+...|.+.++.
T Consensus 763 a~~k~G~le~A~~l~~~ 779 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQ 779 (1060)
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 44446788888888776
No 145
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=79.23 E-value=5 Score=26.43 Aligned_cols=29 Identities=7% Similarity=0.182 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy11025 393 EYISRAARMCVRVKEFDKAADLIRQEIGY 421 (535)
Q Consensus 393 ~~l~kaAel~e~~~~y~~Aie~ye~~~~~ 421 (535)
+.+-.+|.++...++|++|++.|+++.++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45566777777777777777777776543
No 146
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=79.14 E-value=53 Score=33.35 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025 493 AIGRLAVALVLVQLARGDTVAAEKAFKE 520 (535)
Q Consensus 493 ~~~~l~l~a~lc~L~~gD~V~A~~a~~~ 520 (535)
...-....+||.+||.++.-.|...+..
T Consensus 139 e~dlfi~RaVL~yL~l~n~~~A~~~~~~ 166 (260)
T PF04190_consen 139 EADLFIARAVLQYLCLGNLRDANELFDT 166 (260)
T ss_dssp -HHHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3455668899999999999999998875
No 147
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=78.56 E-value=25 Score=28.57 Aligned_cols=54 Identities=17% Similarity=0.162 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC----CcHHHHHHHHHHHHHHHHHhh
Q psy11025 353 STVLEKGAKSLEELKSDAALTLYSRAADVAHGE----DNYKQAAEYISRAARMCVRVK 406 (535)
Q Consensus 353 A~~l~~AAk~~ek~~~~eAie~y~kAaely~~e----gr~~~Aa~~l~kaAel~e~~~ 406 (535)
.....+|.++=...+.++|+.+|.+|++.|..- -.+.....+..++.+.+.+.+
T Consensus 7 ~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~~k~~eyl~RaE 64 (75)
T cd02678 7 IELVKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKNPKSKESIRAKCTEYLDRAE 64 (75)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHH
Confidence 334444444444456888888888888886332 234444455555555555543
No 148
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=78.48 E-value=4.6 Score=26.37 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy11025 394 YISRAARMCVRVKEFDKAADLIRQEIGYH 422 (535)
Q Consensus 394 ~l~kaAel~e~~~~y~~Aie~ye~~~~~~ 422 (535)
.+-++|.++...|++++|+++|++..+.|
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 45677888888888888888888876543
No 149
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=78.27 E-value=5.5 Score=26.50 Aligned_cols=28 Identities=7% Similarity=0.236 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy11025 393 EYISRAARMCVRVKEFDKAADLIRQEIG 420 (535)
Q Consensus 393 ~~l~kaAel~e~~~~y~~Aie~ye~~~~ 420 (535)
+.+-..|.++...++|++|++.|+++.+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4555666677777777777777776644
No 150
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=78.26 E-value=5.1 Score=26.56 Aligned_cols=29 Identities=7% Similarity=0.276 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy11025 393 EYISRAARMCVRVKEFDKAADLIRQEIGY 421 (535)
Q Consensus 393 ~~l~kaAel~e~~~~y~~Aie~ye~~~~~ 421 (535)
+.+-..|.++...+++++|++.|+++.++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45566777777777777777777776543
No 151
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=78.21 E-value=33 Score=35.06 Aligned_cols=123 Identities=11% Similarity=0.149 Sum_probs=74.8
Q ss_pred HhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH-HH-hCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Q psy11025 328 AADVAHGEDNYKQAAEYISRNREAASTVLEKGAKS-LE-ELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRV 405 (535)
Q Consensus 328 AA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~-~e-k~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~ 405 (535)
......|-..|.+|- +.+...-..|+..|.+ +. ..+++.|...|+.+...|..++ ++.....+++...
T Consensus 14 ~~g~~~aR~vF~~a~----~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~------~~~~~Y~~~l~~~ 83 (280)
T PF05843_consen 14 TEGIEAARKVFKRAR----KDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDP------DFWLEYLDFLIKL 83 (280)
T ss_dssp HHHHHHHHHHHHHHH----CCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H------HHHHHHHHHHHHT
T ss_pred hCChHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHh
Confidence 333677888888884 3222233568888888 44 2457779999999999988874 4566666777788
Q ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccC
Q psy11025 406 KEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCE 463 (535)
Q Consensus 406 ~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~ 463 (535)
++.+.|-.+||+...............+. .+-.....||.....++++++..++.
T Consensus 84 ~d~~~aR~lfer~i~~l~~~~~~~~iw~~---~i~fE~~~Gdl~~v~~v~~R~~~~~~ 138 (280)
T PF05843_consen 84 NDINNARALFERAISSLPKEKQSKKIWKK---FIEFESKYGDLESVRKVEKRAEELFP 138 (280)
T ss_dssp T-HHHHHHHHHHHCCTSSCHHHCHHHHHH---HHHHHHHHS-HHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHhcCchhHHHHHHHH---HHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 99999999999986553222211111111 12234445777666666666655443
No 152
>KOG1129|consensus
Probab=77.90 E-value=45 Score=35.39 Aligned_cols=131 Identities=18% Similarity=0.237 Sum_probs=68.7
Q ss_pred HHHHHHHHHhCC-HHHHHHHHHHHHHH--------------HhcCCcHHHHHHHHHHHHHH-------HHH-------hh
Q psy11025 356 LEKGAKSLEELK-SDAALTLYSRAADV--------------AHGEDNYKQAAEYISRAARM-------CVR-------VK 406 (535)
Q Consensus 356 l~~AAk~~ek~~-~~eAie~y~kAael--------------y~~egr~~~Aa~~l~kaAel-------~e~-------~~ 406 (535)
+..-|.+++.++ .++|+++|+.+.++ |-=+|++..|..+|.+|-++ +.. .+
T Consensus 293 l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaq 372 (478)
T KOG1129|consen 293 LLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQ 372 (478)
T ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhc
Confidence 334455555543 56666666665554 22234566666666666442 222 34
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccC--CCCccccccccccccccccch
Q psy11025 407 EFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCE--APERCESGSSSFSFSLGKAGY 484 (535)
Q Consensus 407 ~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~--~~~f~~sre~~~l~~L~l~ay 484 (535)
+|+-+.-.|+++-..-. ....++..+.-+.-+....||.+-|.++|+- |. |+..
T Consensus 373 Q~D~~L~sf~RAlstat---~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrl----aL~~d~~h----------------- 428 (478)
T KOG1129|consen 373 QIDLVLPSFQRALSTAT---QPGQAADVWYNLGFVAVTIGDFNLAKRCFRL----ALTSDAQH----------------- 428 (478)
T ss_pred chhhhHHHHHHHHhhcc---CcchhhhhhhccceeEEeccchHHHHHHHHH----HhccCcch-----------------
Confidence 55555566655533222 1222332222222233356888888888862 21 1110
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025 485 HQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE 520 (535)
Q Consensus 485 ~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~ 520 (535)
+..+...+|+....||+.+|+.-++.
T Consensus 429 ----------~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 429 ----------GEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred ----------HHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 11124457777888999999888864
No 153
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=77.79 E-value=53 Score=37.86 Aligned_cols=21 Identities=19% Similarity=0.458 Sum_probs=13.3
Q ss_pred HHHHHHHHHhchHHHHHHHHH
Q psy11025 320 AALTLYSRAADVAHGEDNYKQ 340 (535)
Q Consensus 320 ~AA~lYekAA~~~eAa~af~k 340 (535)
.-.+.|-++|.+++|.+.|.+
T Consensus 264 ~Li~~y~k~g~~~~A~~vf~~ 284 (697)
T PLN03081 264 ALIDMYSKCGDIEDARCVFDG 284 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHh
Confidence 445667777766666666653
No 154
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=77.69 E-value=15 Score=30.39 Aligned_cols=32 Identities=25% Similarity=0.278 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q psy11025 352 ASTVLEKGAKSLEELKSDAALTLYSRAADVAH 383 (535)
Q Consensus 352 AA~~l~~AAk~~ek~~~~eAie~y~kAaely~ 383 (535)
|.....+|.++=......+|+.+|++|++++.
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~ 37 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLS 37 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 44455555555555556667777776666643
No 155
>KOG2376|consensus
Probab=77.62 E-value=87 Score=35.57 Aligned_cols=62 Identities=21% Similarity=0.309 Sum_probs=41.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHH---------hh--HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025 397 RAARMCVRVKEFDKAADLIRQEIGYHQE---------SE--HLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGN 460 (535)
Q Consensus 397 kaAel~e~~~~y~~Aie~ye~~~~~~~a---------~e--~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~ 460 (535)
..|-++...|+|.+|+++++.+.+.+.. .+ .-.+.+++-++.++-. .|+...|..+|..+..
T Consensus 180 N~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~--~Gqt~ea~~iy~~~i~ 252 (652)
T KOG2376|consen 180 NTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL--QGQTAEASSIYVDIIK 252 (652)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH--hcchHHHHHHHHHHHH
Confidence 3444555579999999999999666532 12 2445566666655544 4777778888887543
No 156
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=77.59 E-value=69 Score=32.60 Aligned_cols=166 Identities=18% Similarity=0.134 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh---H
Q psy11025 351 AASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE---H 427 (535)
Q Consensus 351 ~AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e---~ 427 (535)
.+...|.++-.-+.+.+.++|+..|+..-.-+-... . +-+.+...|--.-+.++|.+|+...++-.++|-... +
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~-~--~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY 109 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSP-Y--SEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADY 109 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-c--cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhH
Confidence 377888888888888888889988886665554442 1 233444444444557899999999999888874321 1
Q ss_pred -HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHh
Q psy11025 428 -LLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQL 506 (535)
Q Consensus 428 -~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L 506 (535)
+--.|...+ ..+-...-|...+..+|..+...... |=.|+...-... ++..+ -+.....-+..+-.+|
T Consensus 110 ~~YlkgLs~~--~~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS~Ya~dA~~-~i~~~------~d~LA~~Em~IaryY~ 178 (254)
T COG4105 110 AYYLKGLSYF--FQIDDVTRDQSAARAAFAAFKELVQR--YPNSRYAPDAKA-RIVKL------NDALAGHEMAIARYYL 178 (254)
T ss_pred HHHHHHHHHh--ccCCccccCHHHHHHHHHHHHHHHHH--CCCCcchhhHHH-HHHHH------HHHHHHHHHHHHHHHH
Confidence 111110000 01122244555566666554432111 111211110000 01111 1223333478888999
Q ss_pred ccCCHHHHHHHHHH----hcCCCCchhh
Q psy11025 507 ARGDTVAAEKAFKE----WGNCCEAPEI 530 (535)
Q Consensus 507 ~~gD~V~A~~a~~~----~~~F~~s~E~ 530 (535)
.+|-.|+|-+-+++ +|....++|.
T Consensus 179 kr~~~~AA~nR~~~v~e~y~~t~~~~ea 206 (254)
T COG4105 179 KRGAYVAAINRFEEVLENYPDTSAVREA 206 (254)
T ss_pred HhcChHHHHHHHHHHHhccccccchHHH
Confidence 99999999999887 3666665554
No 157
>PRK14574 hmsH outer membrane protein; Provisional
Probab=77.08 E-value=70 Score=38.07 Aligned_cols=122 Identities=15% Similarity=0.044 Sum_probs=76.4
Q ss_pred HHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q psy11025 322 LTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEE-LKSDAALTLYSRAADVAHGEDNYKQAAEYISRAAR 400 (535)
Q Consensus 322 A~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek-~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAe 400 (535)
+.+|-.+++..+|...+++|. ...+. ....+.-.|+++.. .++++|+++|+++.+..-... ..+.-.+.
T Consensus 75 l~l~~~~G~~~~A~~~~eka~---~p~n~-~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~------~~l~gLa~ 144 (822)
T PRK14574 75 LQIAGWAGRDQEVIDVYERYQ---SSMNI-SSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNP------DLISGMIM 144 (822)
T ss_pred HHHHHHcCCcHHHHHHHHHhc---cCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHH
Confidence 567777788888888888877 11111 12233334667766 469999999999988876662 22234477
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025 401 MCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGN 460 (535)
Q Consensus 401 l~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~ 460 (535)
++...+++++|++.+++.....-..... .+.. .+....++...|...|++...
T Consensus 145 ~y~~~~q~~eAl~~l~~l~~~dp~~~~~--l~la-----yL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 145 TQADAGRGGVVLKQATELAERDPTVQNY--MTLS-----YLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHhhcCCHHHHHHHHHHhcccCcchHHH--HHHH-----HHHHhcchHHHHHHHHHHHHH
Confidence 8888899999999999987664442221 1111 111124455457788877433
No 158
>KOG0550|consensus
Probab=76.89 E-value=14 Score=40.12 Aligned_cols=87 Identities=11% Similarity=0.140 Sum_probs=46.4
Q ss_pred hchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhh
Q psy11025 329 ADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKE 407 (535)
Q Consensus 329 A~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~ 407 (535)
|++.+|.++|..|..+--.+...=|.+|-.=|...-... +.+||.--..|..+ -.+..+.|...|+-+...+.
T Consensus 263 G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i------D~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 263 GNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI------DSSYIKALLRRANCHLALEK 336 (486)
T ss_pred cchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc------CHHHHHHHHHHHHHHHHHHH
Confidence 445555555555544332233344555555444444433 56666555555444 13344555555665566667
Q ss_pred HHHHHHHHHHHHHH
Q psy11025 408 FDKAADLIRQEIGY 421 (535)
Q Consensus 408 y~~Aie~ye~~~~~ 421 (535)
|++|++-|+++...
T Consensus 337 ~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHhh
Confidence 77777777766544
No 159
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=76.67 E-value=1.1e+02 Score=32.54 Aligned_cols=65 Identities=14% Similarity=0.167 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy11025 351 AASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY 421 (535)
Q Consensus 351 ~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~ 421 (535)
+=|..|-+-|..+... +.+.|++++.+|.+. +-+..+|.-.+. ++....|+|+.|++.++.+.+.
T Consensus 178 eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa---~~~cvRAsi~lG---~v~~~~g~y~~AV~~~e~v~eQ 243 (389)
T COG2956 178 EIAQFYCELAQQALASSDVDRARELLKKALQA---DKKCVRASIILG---RVELAKGDYQKAVEALERVLEQ 243 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh---Cccceehhhhhh---HHHHhccchHHHHHHHHHHHHh
Confidence 4566777777666643 477888888888654 333345554443 4556679999999999988543
No 160
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=76.33 E-value=7 Score=25.97 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhCC-HHHHHHHHHHHHHHH
Q psy11025 353 STVLEKGAKSLEELK-SDAALTLYSRAADVA 382 (535)
Q Consensus 353 A~~l~~AAk~~ek~~-~~eAie~y~kAaely 382 (535)
|.+|..-|.++...+ +++|+++|++|+++-
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 345666677776654 888999998888763
No 161
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=76.18 E-value=6.3 Score=27.04 Aligned_cols=32 Identities=13% Similarity=0.265 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy11025 392 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQ 423 (535)
Q Consensus 392 a~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~ 423 (535)
+.++..+|.++...++|++|..+++++...+.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 33 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRE 33 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence 45777888888888888888888888765554
No 162
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=74.93 E-value=7.8 Score=26.67 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=18.0
Q ss_pred HHHHHHHHHhCC-HHHHHHHHHHHHHHHhc
Q psy11025 356 LEKGAKSLEELK-SDAALTLYSRAADVAHG 384 (535)
Q Consensus 356 l~~AAk~~ek~~-~~eAie~y~kAaely~~ 384 (535)
|...|++|.+.+ +++|+++|++|..+-..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 455566666654 77777777776655433
No 163
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=73.97 E-value=35 Score=28.13 Aligned_cols=57 Identities=14% Similarity=0.180 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHHHHHhhhHH
Q psy11025 353 STVLEKGAKSLEELKSDAALTLYSRAADVAHG----EDNYKQAAEYISRAARMCVRVKEFD 409 (535)
Q Consensus 353 A~~l~~AAk~~ek~~~~eAie~y~kAaely~~----egr~~~Aa~~l~kaAel~e~~~~y~ 409 (535)
.....+|.++=...+.++|+.+|.+|++.|.. +-....-.-+..++.+.+.+.+...
T Consensus 7 ~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~RAE~Lk 67 (77)
T cd02683 7 KEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDRAEAIK 67 (77)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444445578888888888887643 2223333344555555555544433
No 164
>KOG2041|consensus
Probab=73.78 E-value=49 Score=38.30 Aligned_cols=131 Identities=15% Similarity=0.096 Sum_probs=73.0
Q ss_pred HHHHHHHHHhCC-HHHHHHHHHHHHHHHh------c---CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q psy11025 356 LEKGAKSLEELK-SDAALTLYSRAADVAH------G---EDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQES 425 (535)
Q Consensus 356 l~~AAk~~ek~~-~~eAie~y~kAaely~------~---egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~ 425 (535)
|++|-+.|.+.| -+-||+++.+-+++|. . +..-..-.+.+..+++.+.....+++|.++|..-...-
T Consensus 750 feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e--- 826 (1189)
T KOG2041|consen 750 FEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTE--- 826 (1189)
T ss_pred hhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH---
Confidence 667777777776 6778888887777642 1 11223344667777777777777888888776643221
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHH
Q psy11025 426 EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQ 505 (535)
Q Consensus 426 e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~ 505 (535)
.... .+.+|..++. +|..++...+ .+.|+..+ ... |-.+|- +-.|+-|+
T Consensus 827 ----~~~e-----cly~le~f~~------LE~la~~Lpe-------~s~llp~~-a~m-------f~svGM-C~qAV~a~ 875 (1189)
T KOG2041|consen 827 ----NQIE-----CLYRLELFGE------LEVLARTLPE-------DSELLPVM-ADM-------FTSVGM-CDQAVEAY 875 (1189)
T ss_pred ----hHHH-----HHHHHHhhhh------HHHHHHhcCc-------ccchHHHH-HHH-------HHhhch-HHHHHHHH
Confidence 1111 1445555555 2222222221 23333332 111 222222 35678889
Q ss_pred hccCCHHHHHHHHHH
Q psy11025 506 LARGDTVAAEKAFKE 520 (535)
Q Consensus 506 L~~gD~V~A~~a~~~ 520 (535)
|..++.-+|--++-+
T Consensus 876 Lr~s~pkaAv~tCv~ 890 (1189)
T KOG2041|consen 876 LRRSLPKAAVHTCVE 890 (1189)
T ss_pred HhccCcHHHHHHHHH
Confidence 999999888666544
No 165
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=73.61 E-value=8.4 Score=25.46 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHh
Q psy11025 353 STVLEKGAKSLEELK-SDAALTLYSRAADVAH 383 (535)
Q Consensus 353 A~~l~~AAk~~ek~~-~~eAie~y~kAaely~ 383 (535)
|+.|...+.++.+.+ .++|+++|++|+++-.
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 345667777777654 8888888888887743
No 166
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=73.29 E-value=43 Score=37.56 Aligned_cols=132 Identities=15% Similarity=0.090 Sum_probs=87.0
Q ss_pred CCHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHH
Q psy11025 316 LKPDAALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEY 394 (535)
Q Consensus 316 ~K~D~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~ 394 (535)
|-.==.|.+|..-|++.+|.+...+|.+.- | +....|.-=|++|+..+ +.+|++++..|-.+=..+ |+ .
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~ht---P-t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D-Ry-----i 264 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHT---P-TLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD-RY-----I 264 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcC---C-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh-HH-----H
Confidence 655567888999999999999888887542 2 24567888899999865 999999999888774333 22 2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHH-HH-hhH-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy11025 395 ISRAARMCVRVKEFDKAADLIRQEIGYH-QE-SEH-LLAIGRLAVALVLVQLARGDTVAAEKAFKE 457 (535)
Q Consensus 395 l~kaAel~e~~~~y~~Aie~ye~~~~~~-~a-~e~-~~~a~rl~la~il~~L~~~D~vaA~~~~e~ 457 (535)
-.|+|+.+.+.+++++|.++....-+.- .. .+. -.++.+..+..+-+++..||...|-+-|..
T Consensus 265 NsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~ 330 (517)
T PF12569_consen 265 NSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHA 330 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 2378888888899999988765542211 11 111 222333334445566667777666555444
No 167
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=73.15 E-value=49 Score=33.12 Aligned_cols=86 Identities=17% Similarity=0.055 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhh
Q psy11025 331 VAHGEDNYKQAAEYISR--NREAASTVLEKGAKSLEE-LKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKE 407 (535)
Q Consensus 331 ~~eAa~af~kAA~~y~~--~~~~AA~~l~~AAk~~ek-~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~ 407 (535)
.....+++.+|.+.|++ ....+.....+.|+-|-. .++++|+.+|+.++..|..+|=..-...++.++.+.+...++
T Consensus 154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~ 233 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGD 233 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 45678888999998876 445566666666666655 569999999999999999999889999999999998888888
Q ss_pred HHHHHHHHH
Q psy11025 408 FDKAADLIR 416 (535)
Q Consensus 408 y~~Aie~ye 416 (535)
.+..+.+.-
T Consensus 234 ~~~~l~~~l 242 (247)
T PF11817_consen 234 VEDYLTTSL 242 (247)
T ss_pred HHHHHHHHH
Confidence 887776543
No 168
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=73.07 E-value=44 Score=35.90 Aligned_cols=126 Identities=13% Similarity=0.091 Sum_probs=76.3
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q psy11025 320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAA 399 (535)
Q Consensus 320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaA 399 (535)
--+.+|.+.+..++|.+...++-..+-++...+-..+..... +...+++.+.++++++.....++ +. +..+.-.|
T Consensus 268 ~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~-l~~~~~~~~~~~~e~~lk~~p~~--~~--~~ll~sLg 342 (409)
T TIGR00540 268 ALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPR-LKPEDNEKLEKLIEKQAKNVDDK--PK--CCINRALG 342 (409)
T ss_pred HHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhh-cCCCChHHHHHHHHHHHHhCCCC--hh--HHHHHHHH
Confidence 455677788888888888888765432222111012322222 33345777888888777654444 22 45677788
Q ss_pred HHHHHhhhHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy11025 400 RMCVRVKEFDKAADLIRQEIG--YHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE 457 (535)
Q Consensus 400 el~e~~~~y~~Aie~ye~~~~--~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~ 457 (535)
.++.+.++|.+|.++|+++.. ..-..+.... ++ .+....|+...|.++|++
T Consensus 343 ~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~-----La--~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 343 QLLMKHGEFIEAADAFKNVAACKEQLDANDLAM-----AA--DAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHH-----HH--HHHHHcCCHHHHHHHHHH
Confidence 899999999999999995332 2211121111 22 234445777779899886
No 169
>KOG4555|consensus
Probab=71.78 E-value=62 Score=30.10 Aligned_cols=89 Identities=15% Similarity=0.127 Sum_probs=68.9
Q ss_pred HHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Q psy11025 327 RAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEE-LKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRV 405 (535)
Q Consensus 327 kAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek-~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~ 405 (535)
.++..+.|.+.|.+|....-+. +.+|..=|..+.- .++++|.+-+.+|.++-.+. .+.|.+.+.+-+-||-..
T Consensus 55 E~g~Ld~AlE~F~qal~l~P~r----aSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~--trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 55 EAGDLDGALELFGQALCLAPER----ASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ--TRTACQAFVQRGLLYRLL 128 (175)
T ss_pred hccchHHHHHHHHHHHHhcccc----hHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc--chHHHHHHHHHHHHHHHh
Confidence 4556888999999987664333 2246655667764 45999999999999987666 578889999999999888
Q ss_pred hhHHHHHHHHHHHHHH
Q psy11025 406 KEFDKAADLIRQEIGY 421 (535)
Q Consensus 406 ~~y~~Aie~ye~~~~~ 421 (535)
|+-+.|-.=|+.++++
T Consensus 129 g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQL 144 (175)
T ss_pred CchHHHHHhHHHHHHh
Confidence 9988888888887655
No 170
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=71.67 E-value=29 Score=28.63 Aligned_cols=35 Identities=14% Similarity=0.256 Sum_probs=23.7
Q ss_pred hCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q psy11025 365 ELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAA 399 (535)
Q Consensus 365 k~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaA 399 (535)
..+.++|+++|.+|+++|..+-....-.....|+.
T Consensus 19 ~gny~eA~~lY~~ale~~~~ekn~~~k~~i~~K~~ 53 (75)
T cd02680 19 KGNAEEAIELYTEAVELCINTSNETMDQALQTKLK 53 (75)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHH
Confidence 34689999999999999988543333333445554
No 171
>KOG2796|consensus
Probab=71.60 E-value=21 Score=36.67 Aligned_cols=116 Identities=13% Similarity=0.136 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHh
Q psy11025 368 SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE---SEHLLAIGRLAVALVLVQLA 444 (535)
Q Consensus 368 ~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a---~e~~~~a~rl~la~il~~L~ 444 (535)
+.-.+.+|.+-++.+...+ + ....+.+++.-+.|+.+-|-.+++++.+.-.. ...-..+++. .-+++|.
T Consensus 193 y~iS~d~~~~vi~~~~e~~-p----~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n---~a~i~lg 264 (366)
T KOG2796|consen 193 YVLSVDAYHSVIKYYPEQE-P----QLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN---SAFLHLG 264 (366)
T ss_pred hhhhHHHHHHHHHhCCccc-H----HHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh---hhhheec
Confidence 4456666776666443332 2 24556677777788887777777765433222 1111112222 2367888
Q ss_pred cCCHHHHHHHHHHhhhccCCCCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025 445 RGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE 520 (535)
Q Consensus 445 ~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~ 520 (535)
..|.+.|...|.++.. .|+.- ..+ .-...||+|+.||.++|-+.++.
T Consensus 265 ~nn~a~a~r~~~~i~~--~D~~~-------------~~a--------------~NnKALcllYlg~l~DAiK~~e~ 311 (366)
T KOG2796|consen 265 QNNFAEAHRFFTEILR--MDPRN-------------AVA--------------NNNKALCLLYLGKLKDALKQLEA 311 (366)
T ss_pred ccchHHHHHHHhhccc--cCCCc-------------hhh--------------hchHHHHHHHHHHHHHHHHHHHH
Confidence 8899887777765332 12110 111 12347899999999999999886
No 172
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=71.32 E-value=44 Score=36.20 Aligned_cols=110 Identities=14% Similarity=0.145 Sum_probs=66.9
Q ss_pred HhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhh
Q psy11025 328 AADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVK 406 (535)
Q Consensus 328 AA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~ 406 (535)
...+..|.+.|++.. .+.++ + ..-.|+++-..+ ..+|++++.+++.....+ +..+.--|+++...+
T Consensus 182 t~~~~~ai~lle~L~---~~~pe-v---~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d------~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 182 TQRYDEAIELLEKLR---ERDPE-V---AVLLARVYLLMNEEVEAIRLLNEALKENPQD------SELLNLQAEFLLSKK 248 (395)
T ss_pred cccHHHHHHHHHHHH---hcCCc-H---HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcC
Confidence 334555555555532 22333 2 223455554444 678999999998543333 778888888888889
Q ss_pred hHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy11025 407 EFDKAADLIRQEIGYHQE-SEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE 457 (535)
Q Consensus 407 ~y~~Aie~ye~~~~~~~a-~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~ 457 (535)
+|+.|+++.+++....-. -+.+...+ .|+...||...|.-+++.
T Consensus 249 ~~~lAL~iAk~av~lsP~~f~~W~~La-------~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 249 KYELALEIAKKAVELSPSEFETWYQLA-------ECYIQLGDFENALLALNS 293 (395)
T ss_pred CHHHHHHHHHHHHHhCchhHHHHHHHH-------HHHHhcCCHHHHHHHHhc
Confidence 999999999887655322 22232222 445556676667666653
No 173
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=71.02 E-value=67 Score=35.52 Aligned_cols=124 Identities=13% Similarity=0.061 Sum_probs=77.0
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhc
Q psy11025 366 LKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLAR 445 (535)
Q Consensus 366 ~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~ 445 (535)
.+.+.|.+++......|-.. +=.+--.|++....++.++|++.|++....-..-.++...+.+-+ .+|++..
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s------~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El--~w~~~~~ 318 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNS------ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFEL--AWCHMFQ 318 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHH--HHHHHHH
Confidence 34667777777777766643 334556677777788999999999877643334444444444433 3677777
Q ss_pred CCHHHHHHHHHHhhhccCCCCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCH-------HHHHHHH
Q psy11025 446 GDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDT-------VAAEKAF 518 (535)
Q Consensus 446 ~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~-------V~A~~a~ 518 (535)
.|...|...|...-+ + ..++..-+. .-++.|++-.|+. -.|...+
T Consensus 319 ~~w~~A~~~f~~L~~--------------------~-------s~WSka~Y~-Y~~a~c~~~l~~~~~~~~~~~~a~~l~ 370 (468)
T PF10300_consen 319 HDWEEAAEYFLRLLK--------------------E-------SKWSKAFYA-YLAAACLLMLGREEEAKEHKKEAEELF 370 (468)
T ss_pred chHHHHHHHHHHHHh--------------------c-------cccHHHHHH-HHHHHHHHhhccchhhhhhHHHHHHHH
Confidence 888888888775221 0 113333443 4457888888877 5555556
Q ss_pred HHhcCCC
Q psy11025 519 KEWGNCC 525 (535)
Q Consensus 519 ~~~~~F~ 525 (535)
.+.|++.
T Consensus 371 ~~vp~l~ 377 (468)
T PF10300_consen 371 RKVPKLK 377 (468)
T ss_pred HHHHHHH
Confidence 5555544
No 174
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=70.92 E-value=11 Score=24.60 Aligned_cols=30 Identities=10% Similarity=0.171 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhC-CHHHHHHHHHHHHHHHh
Q psy11025 354 TVLEKGAKSLEEL-KSDAALTLYSRAADVAH 383 (535)
Q Consensus 354 ~~l~~AAk~~ek~-~~~eAie~y~kAaely~ 383 (535)
..+...+.++... +.++|+++|++|+.+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 4555666666654 48888888888887653
No 175
>PLN03077 Protein ECB2; Provisional
Probab=70.08 E-value=95 Score=36.72 Aligned_cols=18 Identities=17% Similarity=0.017 Sum_probs=9.0
Q ss_pred HHHHhhhHHHHHHHHHHH
Q psy11025 401 MCVRVKEFDKAADLIRQE 418 (535)
Q Consensus 401 l~e~~~~y~~Aie~ye~~ 418 (535)
.|.+.|+.++|+++|++.
T Consensus 563 ~~~~~G~~~~A~~lf~~M 580 (857)
T PLN03077 563 GYVAHGKGSMAVELFNRM 580 (857)
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 334445555555555543
No 176
>KOG2376|consensus
Probab=70.07 E-value=1.3e+02 Score=34.32 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=16.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHH
Q psy11025 399 ARMCVRVKEFDKAADLIRQEI 419 (535)
Q Consensus 399 Ael~e~~~~y~~Aie~ye~~~ 419 (535)
|+++-+.++|++|.++|+...
T Consensus 117 AQvlYrl~~ydealdiY~~L~ 137 (652)
T KOG2376|consen 117 AQVLYRLERYDEALDIYQHLA 137 (652)
T ss_pred HHHHHHHhhHHHHHHHHHHHH
Confidence 344445799999999999884
No 177
>KOG2908|consensus
Probab=69.47 E-value=77 Score=33.68 Aligned_cols=127 Identities=17% Similarity=0.162 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHH
Q psy11025 372 LTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAA 451 (535)
Q Consensus 372 ie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA 451 (535)
+++|..=+.=|...=.+-..++.+..+.+ +..+.++|++++++..+.....+......++.+.+..|+|..+|...+
T Consensus 58 l~lY~NFvsefe~kINplslvei~l~~~~---~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~ 134 (380)
T KOG2908|consen 58 LQLYLNFVSEFETKINPLSLVEILLVVSE---QISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEI 134 (380)
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHH---HhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHH
Confidence 55666555555555456666666655554 344888999999998888777655555666667777889999999999
Q ss_pred HHHHHHhhhccCC----CCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCC
Q psy11025 452 EKAFKEWGNCCEA----PERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGD 510 (535)
Q Consensus 452 ~~~~e~~~~~~~~----~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD 510 (535)
.+.+.++...... +...-+.-+. + -..|++..++|..-.+- +|.+|..-|
T Consensus 135 kk~ldd~~~~ld~~~~v~~~Vh~~fY~----l-ssqYyk~~~d~a~yYr~----~L~YL~~~d 188 (380)
T KOG2908|consen 135 KKLLDDLKSMLDSLDGVTSNVHSSFYS----L-SSQYYKKIGDFASYYRH----ALLYLGCSD 188 (380)
T ss_pred HHHHHHHHHHHhcccCCChhhhhhHHH----H-HHHHHHHHHhHHHHHHH----HHHHhcccc
Confidence 9998885542111 1101111111 1 23466667777666654 555665443
No 178
>PLN03077 Protein ECB2; Provisional
Probab=68.83 E-value=2.5e+02 Score=33.25 Aligned_cols=23 Identities=13% Similarity=0.013 Sum_probs=14.7
Q ss_pred HHHHHHhccCCHHHHHHHHHHhc
Q psy11025 500 ALVLVQLARGDTVAAEKAFKEWG 522 (535)
Q Consensus 500 ~a~lc~L~~gD~V~A~~a~~~~~ 522 (535)
..+-++...|+.-.|.+.+++.|
T Consensus 630 ~lv~~l~r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 630 CVVDLLGRAGKLTEAYNFINKMP 652 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHCC
Confidence 34455555677777777777643
No 179
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=67.12 E-value=20 Score=27.40 Aligned_cols=50 Identities=20% Similarity=0.326 Sum_probs=33.7
Q ss_pred HhhhHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025 404 RVKEFDKAADLIRQEIGYHQES-EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGN 460 (535)
Q Consensus 404 ~~~~y~~Aie~ye~~~~~~~a~-e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~ 460 (535)
..|+|++|+++|+++....-.. +.... ++.|++..|+...|...++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~-------la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLL-------LAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHH-------HHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHH
Confidence 4589999999999987665432 22222 23567778888889999986433
No 180
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=66.42 E-value=1e+02 Score=34.67 Aligned_cols=53 Identities=19% Similarity=0.129 Sum_probs=35.5
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q psy11025 399 ARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEW 458 (535)
Q Consensus 399 Ael~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~ 458 (535)
|-+....+++++|...|+++.++-.....+... +.+++..|+...|...|++-
T Consensus 427 a~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~l-------G~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 427 AVQALVKGKTDEAYQAINKAIDLEMSWLNYVLL-------GKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHH
Confidence 444444689999999999987766432222222 34455678888898888873
No 181
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=65.97 E-value=70 Score=31.56 Aligned_cols=92 Identities=14% Similarity=0.148 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH----hh----HHHHHH-HHHH
Q psy11025 367 KSDAALTLYSRAADVAHGE-DNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE----SE----HLLAIG-RLAV 436 (535)
Q Consensus 367 ~~~eAie~y~kAaely~~e-gr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a----~e----~~~~a~-rl~l 436 (535)
+.++|++.|.-|.-.+... +++..-|.++.++|=||-..++-+....+++++.+.|.. .. ....+. -..+
T Consensus 92 t~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLi 171 (214)
T PF09986_consen 92 TLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLI 171 (214)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHH
Confidence 4677777777777776543 366677777778887776655544444444444444422 11 111111 1123
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025 437 ALVLVQLARGDTVAAEKAFKEWGN 460 (535)
Q Consensus 437 a~il~~L~~~D~vaA~~~~e~~~~ 460 (535)
+.+-.+| |+...|.+.|.++..
T Consensus 172 geL~rrl--g~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 172 GELNRRL--GNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHh--CCHHHHHHHHHHHHc
Confidence 3333444 555569999988544
No 182
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=65.92 E-value=26 Score=27.17 Aligned_cols=58 Identities=19% Similarity=0.253 Sum_probs=38.4
Q ss_pred HHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhc
Q psy11025 323 TLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHG 384 (535)
Q Consensus 323 ~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~ 384 (535)
..|.+..+|.+|.+++.++..+. |+. ...+..-|.++.+. ++.+|++.|+++++.-.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~---p~~-~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD---PDD-PELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC---ccc-chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 45666677888888888887764 332 22344455555554 488888888888876553
No 183
>PRK15331 chaperone protein SicA; Provisional
Probab=65.84 E-value=20 Score=34.09 Aligned_cols=20 Identities=20% Similarity=0.192 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHhcCCc
Q psy11025 368 SDAALTLYSRAADVAHGEDN 387 (535)
Q Consensus 368 ~~eAie~y~kAaely~~egr 387 (535)
.+.|+.+|..|+.+-..+.+
T Consensus 87 y~~Ai~~Y~~A~~l~~~dp~ 106 (165)
T PRK15331 87 FQKACDLYAVAFTLLKNDYR 106 (165)
T ss_pred HHHHHHHHHHHHHcccCCCC
Confidence 44555555555544433333
No 184
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=65.36 E-value=33 Score=31.86 Aligned_cols=70 Identities=10% Similarity=0.068 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy11025 352 ASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE 424 (535)
Q Consensus 352 AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a 424 (535)
+...|.+|-..+++.+.++|++.++.=-.-|-.. ..|-+...+++..+-..++|++|+..|++..+++=.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g---~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~ 79 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFG---EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT 79 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 5678888999999989999998888544444433 345567778888888889999999999999888643
No 185
>KOG4162|consensus
Probab=65.17 E-value=48 Score=38.53 Aligned_cols=122 Identities=15% Similarity=0.085 Sum_probs=70.8
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q psy11025 320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRA 398 (535)
Q Consensus 320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~ka 398 (535)
-|+++|.+-++-++|..|..+|..++.- .+..|...+.+++-. ..++|.++|..|..+--+. ..++.-+
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~~~~l----~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h------v~s~~Al 724 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASKIDPL----SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH------VPSMTAL 724 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhcchh----hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC------cHHHHHH
Confidence 6888888888888888888888877633 233455556666643 4788999998887654333 1244556
Q ss_pred HHHHHHhhhHHHHHH--HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy11025 399 ARMCVRVKEFDKAAD--LIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE 457 (535)
Q Consensus 399 Ael~e~~~~y~~Aie--~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~ 457 (535)
|+++.+.|+-.-|.. ++..+.+.= -.. ..++...+-+....||..+|..||.-
T Consensus 725 a~~lle~G~~~la~~~~~L~dalr~d----p~n--~eaW~~LG~v~k~~Gd~~~Aaecf~a 779 (799)
T KOG4162|consen 725 AELLLELGSPRLAEKRSLLSDALRLD----PLN--HEAWYYLGEVFKKLGDSKQAAECFQA 779 (799)
T ss_pred HHHHHHhCCcchHHHHHHHHHHHhhC----CCC--HHHHHHHHHHHHHccchHHHHHHHHH
Confidence 677776665554444 444443221 000 11111111223345666667777765
No 186
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=64.66 E-value=50 Score=27.14 Aligned_cols=33 Identities=21% Similarity=0.272 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Q psy11025 352 ASTVLEKGAKSLEELKSDAALTLYSRAADVAHG 384 (535)
Q Consensus 352 AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~ 384 (535)
|+..+.+|.+.=+..+.++|.++|..|++.|..
T Consensus 6 A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~ 38 (75)
T cd02677 6 AAELIRLALEKEEEGDYEAAFEFYRAGVDLLLK 38 (75)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 344444444444445577788888888887644
No 187
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=63.67 E-value=72 Score=25.19 Aligned_cols=31 Identities=23% Similarity=0.282 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q psy11025 353 STVLEKGAKSLEELKSDAALTLYSRAADVAH 383 (535)
Q Consensus 353 A~~l~~AAk~~ek~~~~eAie~y~kAaely~ 383 (535)
.....+|.++=+..+.++|+++|.+|++++.
T Consensus 6 ~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~ 36 (69)
T PF04212_consen 6 IELIKKAVEADEAGNYEEALELYKEAIEYLM 36 (69)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3344444444445567888888888887754
No 188
>KOG1174|consensus
Probab=63.46 E-value=1.3e+02 Score=33.04 Aligned_cols=67 Identities=16% Similarity=0.109 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--------------HhcCCcHHHHHHHHHHHHHHH-HHhhhHHHHHH
Q psy11025 349 REAASTVLEKGAKSLEELKSDAALTLYSRAADV--------------AHGEDNYKQAAEYISRAARMC-VRVKEFDKAAD 413 (535)
Q Consensus 349 ~~~AA~~l~~AAk~~ek~~~~eAie~y~kAael--------------y~~egr~~~Aa~~l~kaAel~-e~~~~y~~Aie 413 (535)
+++|+..++.+--.|+..+...|..+-++++++ +...||+..|+-.+..+-.|. .+..-|+.=+.
T Consensus 297 ~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~h 376 (564)
T KOG1174|consen 297 KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFH 376 (564)
T ss_pred hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 345888899988889888888999998888875 233345555555555444443 33344444333
Q ss_pred HH
Q psy11025 414 LI 415 (535)
Q Consensus 414 ~y 415 (535)
.|
T Consensus 377 sY 378 (564)
T KOG1174|consen 377 SY 378 (564)
T ss_pred HH
Confidence 33
No 189
>KOG1920|consensus
Probab=63.36 E-value=1.3e+02 Score=36.99 Aligned_cols=32 Identities=19% Similarity=0.181 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q psy11025 394 YISRAARMCVRVKEFDKAADLIRQEIGYHQES 425 (535)
Q Consensus 394 ~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~ 425 (535)
.+.++|-+|++.|+.++|++.|+..++|....
T Consensus 954 ~~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l 985 (1265)
T KOG1920|consen 954 MSDEAALMYERCGKLEKALKAYKECGDWREAL 985 (1265)
T ss_pred cccHHHHHHHHhccHHHHHHHHHHhccHHHHH
Confidence 45567778888888888888888888876553
No 190
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=62.70 E-value=15 Score=26.26 Aligned_cols=32 Identities=9% Similarity=0.240 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy11025 392 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQ 423 (535)
Q Consensus 392 a~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~ 423 (535)
|+++.+.|++....++|++|++=|++..++..
T Consensus 1 Adv~~~Lgeisle~e~f~qA~~D~~~aL~i~~ 32 (38)
T PF10516_consen 1 ADVYDLLGEISLENENFEQAIEDYEKALEIQE 32 (38)
T ss_pred CcHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 46888899998888899999988888765543
No 191
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=62.00 E-value=2.3e+02 Score=30.39 Aligned_cols=84 Identities=18% Similarity=0.143 Sum_probs=42.2
Q ss_pred hchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhh
Q psy11025 329 ADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEE-LKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKE 407 (535)
Q Consensus 329 A~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek-~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~ 407 (535)
|+|..|-+...++.+.- +.. .-.+.-+|.+... .+++.|.++|.+|.+.+.+.+ .+. ....|+++...++
T Consensus 98 g~~~~A~~~l~~~~~~~---~~~-~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~---l~~--~~~~a~l~l~~~~ 168 (409)
T TIGR00540 98 GDYAKAEKLIAKNADHA---AEP-VLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDN---ILV--EIARTRILLAQNE 168 (409)
T ss_pred CCHHHHHHHHHHHhhcC---CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc---hHH--HHHHHHHHHHCCC
Confidence 45666666666655431 111 1223344444443 346667777766665553332 111 1112566666666
Q ss_pred HHHHHHHHHHHHHH
Q psy11025 408 FDKAADLIRQEIGY 421 (535)
Q Consensus 408 y~~Aie~ye~~~~~ 421 (535)
|++|.+.++...+.
T Consensus 169 ~~~Al~~l~~l~~~ 182 (409)
T TIGR00540 169 LHAARHGVDKLLEM 182 (409)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666655433
No 192
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=61.75 E-value=64 Score=36.20 Aligned_cols=49 Identities=16% Similarity=0.053 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy11025 366 LKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY 421 (535)
Q Consensus 366 ~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~ 421 (535)
.++++|...|++|+++-. .+..+.-.|++++..|++++|++.|+++.++
T Consensus 434 g~~~~A~~~l~rAl~L~p-------s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 434 GKTDEAYQAINKAIDLEM-------SWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred CCHHHHHHHHHHHHHcCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 457777777777777651 1345566677778889999999999988544
No 193
>KOG2041|consensus
Probab=61.50 E-value=58 Score=37.74 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=13.9
Q ss_pred cccCCHHHHHHHHHHHhchHHHHHHH
Q psy11025 313 LEELKPDAALTLYSRAADVAHGEDNY 338 (535)
Q Consensus 313 l~k~K~D~AA~lYekAA~~~eAa~af 338 (535)
+.+| ++|++.|.+.++...-.+||
T Consensus 809 ~~~W--e~A~~yY~~~~~~e~~~ecl 832 (1189)
T KOG2041|consen 809 MMEW--EEAAKYYSYCGDTENQIECL 832 (1189)
T ss_pred HHHH--HHHHHHHHhccchHhHHHHH
Confidence 3445 67777777776644444443
No 194
>KOG1538|consensus
Probab=61.39 E-value=2.8e+02 Score=32.25 Aligned_cols=31 Identities=16% Similarity=0.078 Sum_probs=19.1
Q ss_pred CCCCcccccccccccccccCccccCCHH-----------HHHHHHHHHhc
Q psy11025 292 LNSTPRNREAASTVLEKGAKSLEELKPD-----------AALTLYSRAAD 330 (535)
Q Consensus 292 ~~~~p~v~gy~fv~~~~~~~sl~k~K~D-----------~AA~lYekAA~ 330 (535)
..+-+++-+-+.|.+ .|+.= -|-+.|.+--+
T Consensus 572 f~ea~~iaclgVv~~--------DW~~LA~~ALeAL~f~~ARkAY~rVRd 613 (1081)
T KOG1538|consen 572 FKEAYQIACLGVTDT--------DWRELAMEALEALDFETARKAYIRVRD 613 (1081)
T ss_pred hhhhhcccccceecc--------hHHHHHHHHHhhhhhHHHHHHHHHHhc
Confidence 344556666665543 37642 37888988877
No 195
>KOG3060|consensus
Probab=61.28 E-value=1e+02 Score=31.63 Aligned_cols=45 Identities=18% Similarity=0.136 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy11025 368 SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQE 418 (535)
Q Consensus 368 ~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~ 418 (535)
.-+||+.+..=.+.|..+ .+..-.+|+||...++|++|+=.||+.
T Consensus 136 ~l~aIk~ln~YL~~F~~D------~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 136 NLEAIKELNEYLDKFMND------QEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred cHHHHHHHHHHHHHhcCc------HHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 334554444444444443 233444444444444444444444443
No 196
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=59.93 E-value=76 Score=28.25 Aligned_cols=90 Identities=18% Similarity=0.175 Sum_probs=55.8
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHhCHH------HHHHHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHhcCCcHH
Q psy11025 321 ALTLYSRAADVAHGEDNYKQAAEYISRNRE------AASTVLEKGAKSLEELK-----SDAALTLYSRAADVAHGEDNYK 389 (535)
Q Consensus 321 AA~lYekAA~~~eAa~af~kAA~~y~~~~~------~AA~~l~~AAk~~ek~~-----~~eAie~y~kAaely~~egr~~ 389 (535)
|-++|.+ ||.-+|.+.-++..--+.+... .-+..+.+.|.-.++.+ .--|++||.+|+.+....
T Consensus 3 A~~~~~r-GnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~---- 77 (111)
T PF04781_consen 3 AKDYFAR-GNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDS---- 77 (111)
T ss_pred HHHHHHc-cCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhH----
Confidence 4455555 8888888888888777755332 25777777777777544 235777777776663332
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy11025 390 QAAEYISRAARMCVRVKEFDKAADLIRQ 417 (535)
Q Consensus 390 ~Aa~~l~kaAel~e~~~~y~~Aie~ye~ 417 (535)
|..+-.+|+-+-....|++++.-.++
T Consensus 78 --A~~L~~la~~l~s~~~Ykk~v~kak~ 103 (111)
T PF04781_consen 78 --AHSLFELASQLGSVKYYKKAVKKAKR 103 (111)
T ss_pred --HHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 55555556555445556666554444
No 197
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=59.90 E-value=67 Score=26.54 Aligned_cols=34 Identities=18% Similarity=0.105 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Q psy11025 370 AALTLYSRAADVAHGEDNYKQAAEYISRAARMCVR 404 (535)
Q Consensus 370 eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~ 404 (535)
.|..+..+|+++ ...|+...|..||+++++++.+
T Consensus 5 ~A~~~a~~AVe~-D~~gr~~eAi~~Y~~aIe~L~q 38 (75)
T cd02682 5 MARKYAINAVKA-EKEGNAEDAITNYKKAIEVLSQ 38 (75)
T ss_pred HHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHH
Confidence 455555555553 3445566666666666655554
No 198
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=59.60 E-value=1.9e+02 Score=29.35 Aligned_cols=58 Identities=22% Similarity=0.328 Sum_probs=42.7
Q ss_pred HHhchHHHHHHHHHHHHHH-HhCHHH----HHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhc
Q psy11025 327 RAADVAHGEDNYKQAAEYI-SRNREA----ASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHG 384 (535)
Q Consensus 327 kAA~~~eAa~af~kAA~~y-~~~~~~----AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~ 384 (535)
+.++.+-|..+|.|+-.+. ...++. |-.+|.-+-..+++. ++++|+..+++|.+++..
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~ 68 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEK 68 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh
Confidence 3466777888888887776 334443 555666666667777 799999999999999744
No 199
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=58.46 E-value=3.3e+02 Score=31.08 Aligned_cols=144 Identities=16% Similarity=0.099 Sum_probs=88.9
Q ss_pred CHHHHHHHHHHHHHHHH-h-CCHHHHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy11025 348 NREAASTVLEKGAKSLE-E-LKSDAALTLYSRAADVAHGEDN--YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ 423 (535)
Q Consensus 348 ~~~~AA~~l~~AAk~~e-k-~~~~eAie~y~kAaely~~egr--~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~ 423 (535)
++..=|.++-+-|++|- + .+.++|-.++++|..+-...+= ....++++. ++++.+.+... |..++.+..+.+.
T Consensus 54 ~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll--~~i~~~~~~~~-a~~~l~~~I~~~~ 130 (608)
T PF10345_consen 54 SPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLL--ARIYFKTNPKA-ALKNLDKAIEDSE 130 (608)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHH--HHHHHhcCHHH-HHHHHHHHHHHHh
Confidence 45666777777777774 3 3599999999999888765332 235556655 88888865555 9999998888877
Q ss_pred Hh--hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccCCCCccccccccccccccccchhhhhhhHHHHHHHHHHH
Q psy11025 424 ES--EHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVAL 501 (535)
Q Consensus 424 a~--e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a 501 (535)
.. ..+.-+.++.-..+ .+..+|...|...++....+. ...++........+-.
T Consensus 131 ~~~~~~w~~~frll~~~l--~~~~~d~~~Al~~L~~~~~~a-----------------------~~~~d~~~~v~~~l~~ 185 (608)
T PF10345_consen 131 TYGHSAWYYAFRLLKIQL--ALQHKDYNAALENLQSIAQLA-----------------------NQRGDPAVFVLASLSE 185 (608)
T ss_pred ccCchhHHHHHHHHHHHH--HHhcccHHHHHHHHHHHHHHh-----------------------hhcCCHHHHHHHHHHH
Confidence 73 33555555532111 112279988988888744321 1112233334444566
Q ss_pred HHHHhccCCHHHHHHHHH
Q psy11025 502 VLVQLARGDTVAAEKAFK 519 (535)
Q Consensus 502 ~lc~L~~gD~V~A~~a~~ 519 (535)
++++|..+....+-..++
T Consensus 186 ~~l~l~~~~~~d~~~~l~ 203 (608)
T PF10345_consen 186 ALLHLRRGSPDDVLELLQ 203 (608)
T ss_pred HHHHhcCCCchhHHHHHH
Confidence 788888875544444443
No 200
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=58.16 E-value=37 Score=37.30 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHhc----hHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHH
Q psy11025 316 LKPDAALTLYSRAAD----VAHGEDNYKQAAEYISR--NREAASTVLEKGAKS 362 (535)
Q Consensus 316 ~K~D~AA~lYekAA~----~~eAa~af~kAA~~y~~--~~~~AA~~l~~AAk~ 362 (535)
-++|+|..+|++|=. ..+|..+|..-+.||.. ..++|..+|.+|.++
T Consensus 89 GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 89 GRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 488999999999865 23444566666677765 456788888888876
No 201
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=58.05 E-value=18 Score=25.81 Aligned_cols=28 Identities=25% Similarity=0.283 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy11025 394 YISRAARMCVRVKEFDKAADLIRQEIGY 421 (535)
Q Consensus 394 ~l~kaAel~e~~~~y~~Aie~ye~~~~~ 421 (535)
.+...|+.+...|++++|+++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3556778888888888888888887544
No 202
>KOG1941|consensus
Probab=57.98 E-value=2.8e+02 Score=30.11 Aligned_cols=119 Identities=14% Similarity=0.124 Sum_probs=83.0
Q ss_pred CCHH-HHHHHHHHHh------chHHHHHHHHHHHHHHHhCHHHH--HHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhcC
Q psy11025 316 LKPD-AALTLYSRAA------DVAHGEDNYKQAAEYISRNREAA--STVLEKGAKSLEE-LKSDAALTLYSRAADVAHGE 385 (535)
Q Consensus 316 ~K~D-~AA~lYekAA------~~~eAa~af~kAA~~y~~~~~~A--A~~l~~AAk~~ek-~~~~eAie~y~kAaely~~e 385 (535)
|..- .++.+|.-|- ..-+|-++.++|..+-...++.| +.++---|.+|.+ .+.+.|..-|++|.-...+-
T Consensus 200 ~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~ 279 (518)
T KOG1941|consen 200 WSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASL 279 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhh
Confidence 6444 5666665543 35578888888888877766654 6777778888886 46899999999999998887
Q ss_pred CcHHHHHHHHHHHHHHHHHhhhHH-----HHHHHHHHHHHHHHHhhHHHHHHHH
Q psy11025 386 DNYKQAAEYISRAARMCVRVKEFD-----KAADLIRQEIGYHQESEHLLAIGRL 434 (535)
Q Consensus 386 gr~~~Aa~~l~kaAel~e~~~~y~-----~Aie~ye~~~~~~~a~e~~~~a~rl 434 (535)
|.----.+.+.-+|+-++...... +|+++-++..+.-...+.-+.+-|+
T Consensus 280 gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~ 333 (518)
T KOG1941|consen 280 GDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKL 333 (518)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHH
Confidence 754444577777888777643333 4888888887777666654444333
No 203
>KOG1915|consensus
Probab=57.74 E-value=1.1e+02 Score=34.18 Aligned_cols=100 Identities=18% Similarity=0.205 Sum_probs=75.2
Q ss_pred ccCCHH-HHHHHHHHHh----chHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCc
Q psy11025 314 EELKPD-AALTLYSRAA----DVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDN 387 (535)
Q Consensus 314 ~k~K~D-~AA~lYekAA----~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr 387 (535)
+.|.|| .|=-+|.+=- +++.|...|++=..||-+ .+.+.+-|++=++.+ ..-|-..|++|++.+.++
T Consensus 168 ~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~-----v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d-- 240 (677)
T KOG1915|consen 168 MEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPK-----VSNWIKYARFEEKHGNVALARSVYERAIEFLGDD-- 240 (677)
T ss_pred HcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH--
Confidence 457888 7777777643 256777777776666622 445788888877765 888999999999999886
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy11025 388 YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY 421 (535)
Q Consensus 388 ~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~ 421 (535)
..+..++.--|++-++.+.|++|--+|+=+.+.
T Consensus 241 -~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~ 273 (677)
T KOG1915|consen 241 -EEAEILFVAFAEFEERQKEYERARFIYKYALDH 273 (677)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677788888888888888888888888766544
No 204
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=57.06 E-value=66 Score=34.87 Aligned_cols=95 Identities=19% Similarity=0.206 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHhc-hHHHHHH----------HHHHHHHH----HhCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHH
Q psy11025 317 KPDAALTLYSRAAD-VAHGEDN----------YKQAAEYI----SRNREAASTVLEKGAKSL-EELKSDAALTLYSRAAD 380 (535)
Q Consensus 317 K~D~AA~lYekAA~-~~eAa~a----------f~kAA~~y----~~~~~~AA~~l~~AAk~~-ek~~~~eAie~y~kAae 380 (535)
+++.|.++|++--. ..++.-. -.+|..+. .+.+.. +..|..-|+++ .+.+.+.|+++.++|++
T Consensus 184 ~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d-~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ 262 (395)
T PF09295_consen 184 RYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQD-SELLNLQAEFLLSKKKYELALEIAKKAVE 262 (395)
T ss_pred cHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 56889999998653 1111111 12222221 112322 33344444444 44458889999998888
Q ss_pred HHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy11025 381 VAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQE 418 (535)
Q Consensus 381 ly~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~ 418 (535)
+.-.+ -++....|++|...|+|++|+-.+...
T Consensus 263 lsP~~------f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 263 LSPSE------FETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred hCchh------HHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 86655 347778899999999999999777544
No 205
>KOG3081|consensus
Probab=54.81 E-value=1.3e+02 Score=31.05 Aligned_cols=18 Identities=28% Similarity=0.350 Sum_probs=11.5
Q ss_pred HHHHhcCCHHHHHHHHHH
Q psy11025 440 LVQLARGDTVAAEKAFKE 457 (535)
Q Consensus 440 l~~L~~~D~vaA~~~~e~ 457 (535)
.|+|+.+++.+|..+++.
T Consensus 215 v~~l~~~~~eeAe~lL~e 232 (299)
T KOG3081|consen 215 VCHLQLGRYEEAESLLEE 232 (299)
T ss_pred HHHHHhcCHHHHHHHHHH
Confidence 566676777666666653
No 206
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=54.69 E-value=1.1e+02 Score=24.53 Aligned_cols=19 Identities=26% Similarity=0.302 Sum_probs=12.7
Q ss_pred CCHHHHHHHHHHHHHHHhc
Q psy11025 366 LKSDAALTLYSRAADVAHG 384 (535)
Q Consensus 366 ~~~~eAie~y~kAaely~~ 384 (535)
.+.++|+.+|.+|++.|..
T Consensus 22 g~~~eAl~~Y~~a~e~l~~ 40 (77)
T smart00745 22 GDYEEALELYKKAIEYLLE 40 (77)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 3477777777777777543
No 207
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=54.67 E-value=29 Score=35.86 Aligned_cols=118 Identities=20% Similarity=0.222 Sum_probs=65.2
Q ss_pred HHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy11025 357 EKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLA 435 (535)
Q Consensus 357 ~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~ 435 (535)
.-+|-++-.. ++++|++++.+. +. .+++-=..+++...++++.|.+.++..-++-. .....+.+-.
T Consensus 106 ~~~A~i~~~~~~~~~AL~~l~~~-------~~----lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~e-D~~l~qLa~a- 172 (290)
T PF04733_consen 106 LLAATILFHEGDYEEALKLLHKG-------GS----LELLALAVQILLKMNRPDLAEKELKNMQQIDE-DSILTQLAEA- 172 (290)
T ss_dssp HHHHHHHCCCCHHHHHHCCCTTT-------TC----HHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSC-CHHHHHHHHH-
T ss_pred HHHHHHHHHcCCHHHHHHHHHcc-------Cc----ccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-cHHHHHHHHH-
Confidence 3444455443 377777766542 21 24444566778888999999988877644322 2222222222
Q ss_pred HHHHHHHHhcCC--HHHHHHHHHHhhhccCCCCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHH
Q psy11025 436 VALVLVQLARGD--TVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVA 513 (535)
Q Consensus 436 la~il~~L~~~D--~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~ 513 (535)
++.+..|. .-.|--+|++... . |+.-..+.....+|+|..|++..
T Consensus 173 ----wv~l~~g~e~~~~A~y~f~El~~---~--------------------------~~~t~~~lng~A~~~l~~~~~~e 219 (290)
T PF04733_consen 173 ----WVNLATGGEKYQDAFYIFEELSD---K--------------------------FGSTPKLLNGLAVCHLQLGHYEE 219 (290)
T ss_dssp ----HHHHHHTTTCCCHHHHHHHHHHC---C--------------------------S--SHHHHHHHHHHHHHCT-HHH
T ss_pred ----HHHHHhCchhHHHHHHHHHHHHh---c--------------------------cCCCHHHHHHHHHHHHHhCCHHH
Confidence 23333332 2226666665322 1 11112334567899999999999
Q ss_pred HHHHHHH
Q psy11025 514 AEKAFKE 520 (535)
Q Consensus 514 A~~a~~~ 520 (535)
|+..+++
T Consensus 220 Ae~~L~~ 226 (290)
T PF04733_consen 220 AEELLEE 226 (290)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999987
No 208
>KOG0550|consensus
Probab=53.01 E-value=2.1e+02 Score=31.37 Aligned_cols=125 Identities=15% Similarity=0.173 Sum_probs=80.7
Q ss_pred HHHHHHHHHHhc----hHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHH
Q psy11025 319 DAALTLYSRAAD----VAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEY 394 (535)
Q Consensus 319 D~AA~lYekAA~----~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~ 394 (535)
|-|...|.+|=+ ..++..++...-.|-... .++-..+++.+...|-++|..|+.+=.. ....-+.|
T Consensus 220 ~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k--------~~gN~~fk~G~y~~A~E~Yteal~idP~--n~~~nakl 289 (486)
T KOG0550|consen 220 DKAINHFQQALRLDPDHQKSKSASMMPKKLEVKK--------ERGNDAFKNGNYRKAYECYTEALNIDPS--NKKTNAKL 289 (486)
T ss_pred HHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHH--------hhhhhHhhccchhHHHHHHHHhhcCCcc--ccchhHHH
Confidence 356666666554 345666665555554221 1122445666788899999999887444 35677888
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025 395 ISRAARMCVRVKEFDKAADLIRQEIGYHQE-SEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGN 460 (535)
Q Consensus 395 l~kaAel~e~~~~y~~Aie~ye~~~~~~~a-~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~ 460 (535)
|.+-|-...++++..+||.-++.+..+-.. ...+...+ -|+|..++.-.|.+-|++.+.
T Consensus 290 Y~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra-------~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 290 YGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRA-------NCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHh
Confidence 888898999999999999999887654221 23333333 556666666667677776444
No 209
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=52.97 E-value=1.3e+02 Score=24.66 Aligned_cols=29 Identities=24% Similarity=0.241 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q psy11025 355 VLEKGAKSLEELKSDAALTLYSRAADVAH 383 (535)
Q Consensus 355 ~l~~AAk~~ek~~~~eAie~y~kAaely~ 383 (535)
...+|.+.=+..+.++|+.+|..|++.|.
T Consensus 9 lv~~Av~~D~~g~y~eA~~lY~~ale~~~ 37 (75)
T cd02684 9 LVVQAVKKDQRGDAAAALSLYCSALQYFV 37 (75)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 33344333333457777777777777753
No 210
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=52.80 E-value=38 Score=22.90 Aligned_cols=30 Identities=20% Similarity=0.262 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhCC-HHHHHHHHHHHHHHHh
Q psy11025 354 TVLEKGAKSLEELK-SDAALTLYSRAADVAH 383 (535)
Q Consensus 354 ~~l~~AAk~~ek~~-~~eAie~y~kAaely~ 383 (535)
.++...|.+|...+ +++|..++++|.+++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 33 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRE 33 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence 34555555555543 6666666666666654
No 211
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=52.59 E-value=1.2e+02 Score=24.31 Aligned_cols=19 Identities=32% Similarity=0.291 Sum_probs=13.7
Q ss_pred CCHHHHHHHHHHHHHHHhc
Q psy11025 366 LKSDAALTLYSRAADVAHG 384 (535)
Q Consensus 366 ~~~~eAie~y~kAaely~~ 384 (535)
.+.++|+.+|..|++.|..
T Consensus 20 g~~~~Al~~Y~~a~e~l~~ 38 (75)
T cd02656 20 GNYEEALELYKEALDYLLQ 38 (75)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 4477888888888887643
No 212
>KOG1125|consensus
Probab=51.74 E-value=36 Score=38.29 Aligned_cols=40 Identities=8% Similarity=0.102 Sum_probs=28.0
Q ss_pred HhcCCcHHHHHHHHHHHHH--------------HHHHhhhHHHHHHHHHHHHHH
Q psy11025 382 AHGEDNYKQAAEYISRAAR--------------MCVRVKEFDKAADLIRQEIGY 421 (535)
Q Consensus 382 y~~egr~~~Aa~~l~kaAe--------------l~e~~~~y~~Aie~ye~~~~~ 421 (535)
|...|.|++|.+||.-+-. .+....++++||..|.++.++
T Consensus 440 y~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL 493 (579)
T KOG1125|consen 440 YNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL 493 (579)
T ss_pred HhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc
Confidence 5666667777777765533 334457889999999998665
No 213
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=51.69 E-value=1.1e+02 Score=33.12 Aligned_cols=105 Identities=14% Similarity=0.048 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhc-----hHHHHHHHHHHHHHHHhCH--HHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHH--hcC--
Q psy11025 319 DAALTLYSRAAD-----VAHGEDNYKQAAEYISRNR--EAASTVLEKGAKSLE--ELKSDAALTLYSRAADVA--HGE-- 385 (535)
Q Consensus 319 D~AA~lYekAA~-----~~eAa~af~kAA~~y~~~~--~~AA~~l~~AAk~~e--k~~~~eAie~y~kAaely--~~e-- 385 (535)
|.|...|.+++. ..-|..+..-.+++++-.. .+|+..+.++..-+- ...+-.++=++++++-+| ...
T Consensus 279 e~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~ 358 (414)
T PF12739_consen 279 ENAYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNR 358 (414)
T ss_pred HHHHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCC
Confidence 467777777532 1245556666666654332 256666666665532 121112344777777777 322
Q ss_pred -----CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy11025 386 -----DNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ 423 (535)
Q Consensus 386 -----gr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~ 423 (535)
.|.+.++-.+.=+|.-|.+.+....|...|.++...|.
T Consensus 359 ~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 359 PSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred CCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 24677777777777777777788878777777766665
No 214
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=51.20 E-value=41 Score=33.09 Aligned_cols=57 Identities=18% Similarity=0.338 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHH
Q psy11025 353 STVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKA 411 (535)
Q Consensus 353 A~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~A 411 (535)
+......|-.|-+.|++.|+.+|.+|.+++...++++ .+.+.-.|.++-+.++|+.|
T Consensus 141 ~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n--~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 141 AELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFN--PEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCC--HHHHHHHHHHHHHhcchhhh
Confidence 4455566788888899999999999999999887665 57888889999888888877
No 215
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=51.04 E-value=1.7e+02 Score=29.32 Aligned_cols=47 Identities=21% Similarity=0.283 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHH
Q psy11025 369 DAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVR----VKEFDKAADLIRQEIGYHQ 423 (535)
Q Consensus 369 ~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~----~~~y~~Aie~ye~~~~~~~ 423 (535)
..|+..|.+|++.. -.+....++.+|+. ..++.+|+.+|.++++.-.
T Consensus 172 ~~A~~~~~~aa~~~--------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 172 KKALYLYRKAAELG--------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred HhHHHHHHHHHHhc--------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 36777777777766 22344455566655 2488888888888865443
No 216
>KOG0624|consensus
Probab=50.54 E-value=3.5e+02 Score=29.13 Aligned_cols=94 Identities=17% Similarity=0.137 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH--------------HHHHhhhHHHHHHHHHHHHHHHHH----hhH
Q psy11025 366 LKSDAALTLYSRAADVAHGEDNYKQAAEYISRAAR--------------MCVRVKEFDKAADLIRQEIGYHQE----SEH 427 (535)
Q Consensus 366 ~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAe--------------l~e~~~~y~~Aie~ye~~~~~~~a----~e~ 427 (535)
.||..=..+|.+|. .|.-.||...|..=+.++-+ ++.+.|.+++|+.=|..+.+.--+ .+.
T Consensus 67 ~dp~~Y~aifrRaT-~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~ea 145 (504)
T KOG0624|consen 67 GDPNNYQAIFRRAT-VYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEA 145 (504)
T ss_pred CCchhHHHHHHHHH-HHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHH
Confidence 34555555555553 45566776667666666654 334578999999888887644321 111
Q ss_pred -----HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025 428 -----LLAIGRLAVALVLVQLARGDTVAAEKAFKEWGN 460 (535)
Q Consensus 428 -----~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~ 460 (535)
...-.+..+.+++-....||...|+..+..+-.
T Consensus 146 qskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE 183 (504)
T KOG0624|consen 146 QSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE 183 (504)
T ss_pred HHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 111123334445566678898888777766444
No 217
>KOG0686|consensus
Probab=50.21 E-value=1.4e+02 Score=32.57 Aligned_cols=100 Identities=21% Similarity=0.199 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHH-
Q psy11025 354 TVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAI- 431 (535)
Q Consensus 354 ~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a- 431 (535)
..+.+-+.+|... +.+.|+.+|.+|-++.+.. ..-...+..+.++..-.++|-.-..+--++...-.+.+.....
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~---khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v 227 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSA---KHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEV 227 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcch---HHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhc
Confidence 3466667777764 4889999999966655544 2334444455554444455554443333332221111111111
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHH
Q psy11025 432 -GRLAVALVLVQLARGDTVAAEKAFK 456 (535)
Q Consensus 432 -~rl~la~il~~L~~~D~vaA~~~~e 456 (535)
.++..+.++++|+..++-.|-+.|-
T Consensus 228 ~~kl~C~agLa~L~lkkyk~aa~~fL 253 (466)
T KOG0686|consen 228 PAKLKCAAGLANLLLKKYKSAAKYFL 253 (466)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777777666655555554
No 218
>KOG4234|consensus
Probab=49.87 E-value=1.5e+02 Score=29.48 Aligned_cols=13 Identities=23% Similarity=0.220 Sum_probs=8.3
Q ss_pred CHHHHHHHHHHHh
Q psy11025 317 KPDAALTLYSRAA 329 (535)
Q Consensus 317 K~D~AA~lYekAA 329 (535)
-+++|..-|..|=
T Consensus 110 dyeeA~skY~~Al 122 (271)
T KOG4234|consen 110 DYEEANSKYQEAL 122 (271)
T ss_pred cHHHHHHHHHHHH
Confidence 4567777776664
No 219
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=49.82 E-value=35 Score=20.29 Aligned_cols=26 Identities=8% Similarity=0.312 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy11025 394 YISRAARMCVRVKEFDKAADLIRQEI 419 (535)
Q Consensus 394 ~l~kaAel~e~~~~y~~Aie~ye~~~ 419 (535)
++...|.++...++|++|+..|++..
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44566667777777777777776654
No 220
>KOG4340|consensus
Probab=49.10 E-value=3.5e+02 Score=28.63 Aligned_cols=31 Identities=23% Similarity=0.230 Sum_probs=23.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHh--cCCCCchh
Q psy11025 499 VALVLVQLARGDTVAAEKAFKEW--GNCCEAPE 529 (535)
Q Consensus 499 l~a~lc~L~~gD~V~A~~a~~~~--~~F~~s~E 529 (535)
....|||-..+|...|-+-+.+| -|..+-+|
T Consensus 182 YniALaHy~~~qyasALk~iSEIieRG~r~HPE 214 (459)
T KOG4340|consen 182 YNLALAHYSSRQYASALKHISEIIERGIRQHPE 214 (459)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCc
Confidence 46789999999999999888773 44444444
No 221
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=49.00 E-value=3.1e+02 Score=28.03 Aligned_cols=83 Identities=19% Similarity=0.171 Sum_probs=57.7
Q ss_pred HHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHH
Q psy11025 362 SLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE-HLLAIGRLAVALVL 440 (535)
Q Consensus 362 ~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e-~~~~a~rl~la~il 440 (535)
.+...+..+|+..+.+|..+=-.++++ +.-.+-.|.+.|++++|=..|.++.+++.... ..++.+.+
T Consensus 110 ~~~~g~~~~A~~~~rkA~~l~p~d~~~------~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms------ 177 (257)
T COG5010 110 QIRNGNFGEAVSVLRKAARLAPTDWEA------WNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMS------ 177 (257)
T ss_pred HHHhcchHHHHHHHHHHhccCCCChhh------hhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHH------
Confidence 334456788888888888776666543 33445577888899999988988888876654 35555533
Q ss_pred HHHhcCCHHHHHHHHHH
Q psy11025 441 VQLARGDTVAAEKAFKE 457 (535)
Q Consensus 441 ~~L~~~D~vaA~~~~e~ 457 (535)
.+-.||...|...+..
T Consensus 178 -~~L~gd~~~A~~lll~ 193 (257)
T COG5010 178 -LLLRGDLEDAETLLLP 193 (257)
T ss_pred -HHHcCCHHHHHHHHHH
Confidence 4457898888888765
No 222
>KOG1130|consensus
Probab=48.81 E-value=1.3e+02 Score=32.94 Aligned_cols=131 Identities=17% Similarity=0.131 Sum_probs=61.2
Q ss_pred HHHHHhchHHHHHHHHHHHHHHHh-------CHH--HHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHH
Q psy11025 324 LYSRAADVAHGEDNYKQAAEYISR-------NRE--AASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAE 393 (535)
Q Consensus 324 lYekAA~~~eAa~af~kAA~~y~~-------~~~--~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~ 393 (535)
.|-+-||-.--..-|.||-+.|.- .++ --|++--..++.++-.. +++|+.|-.+=.++-.+-|.--.-+.
T Consensus 57 IYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~R 136 (639)
T KOG1130|consen 57 IYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESR 136 (639)
T ss_pred HHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhH
Confidence 566666644444556666666521 000 01222222233444322 56666666665555443332222233
Q ss_pred HHHHHHHHHHH--------------------hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q psy11025 394 YISRAARMCVR--------------------VKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEK 453 (535)
Q Consensus 394 ~l~kaAel~e~--------------------~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~ 453 (535)
.|=.++.+|.. -..++.|+++|+.-.++....+--...+|.+=.++=.+-+.||+.+|+.
T Consensus 137 AlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~ 216 (639)
T KOG1130|consen 137 ALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIH 216 (639)
T ss_pred HHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHH
Confidence 34445555532 2456677777777766665554444444432111112223456655554
Q ss_pred H
Q psy11025 454 A 454 (535)
Q Consensus 454 ~ 454 (535)
.
T Consensus 217 ~ 217 (639)
T KOG1130|consen 217 F 217 (639)
T ss_pred H
Confidence 3
No 223
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=48.65 E-value=3.1e+02 Score=27.83 Aligned_cols=61 Identities=15% Similarity=0.211 Sum_probs=35.9
Q ss_pred HhCCHHHHHHHHHHHHHHHh-cCC-cHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHH
Q psy11025 364 EELKSDAALTLYSRAADVAH-GED-NYKQAAEYISRAARMCVRVK-EFDKAADLIRQEIGYHQE 424 (535)
Q Consensus 364 ek~~~~eAie~y~kAaely~-~eg-r~~~Aa~~l~kaAel~e~~~-~y~~Aie~ye~~~~~~~a 424 (535)
++.+.+.|.-+|.|+-.+.. ... ....=++.+-.++.-....+ +|+.|+.+++++-+.+..
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~ 68 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEK 68 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh
Confidence 44557777777777777763 221 11222333344444333446 888888888888777643
No 224
>KOG0551|consensus
Probab=48.57 E-value=3.3e+02 Score=29.14 Aligned_cols=98 Identities=18% Similarity=0.195 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHh-----C--HHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHH
Q psy11025 318 PDAALTLYSRAADVAHGEDNYKQAAEYISR-----N--REA-ASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYK 389 (535)
Q Consensus 318 ~D~AA~lYekAA~~~eAa~af~kAA~~y~~-----~--~~~-AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~ 389 (535)
|++=|+-|.+-||..-..+-|..|..||.+ + ++- |+-..-+||--+.=.+...|++=-.+|..+ . -
T Consensus 77 p~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~---~---P 150 (390)
T KOG0551|consen 77 PHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL---K---P 150 (390)
T ss_pred hHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc---C---c
Confidence 346677777777755455556666666632 2 222 333333333333323344444333322222 1 1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy11025 390 QAAEYISRAARMCVRVKEFDKAADLIRQEIGY 421 (535)
Q Consensus 390 ~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~ 421 (535)
.-.+++-+-|+.+..++++.+|+.+++.-...
T Consensus 151 ~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 151 THLKAYIRGAKCLLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred chhhhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Confidence 12345556666666677788888877765433
No 225
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=48.19 E-value=19 Score=24.67 Aligned_cols=33 Identities=18% Similarity=0.365 Sum_probs=20.2
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy11025 374 LYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAA 412 (535)
Q Consensus 374 ~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Ai 412 (535)
+|++|+++--.. ...+...|.++...|++++|+
T Consensus 1 ~y~kAie~~P~n------~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNN------AEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCC------HHHHHHHHHHHHHCcCHHhhc
Confidence 356666665443 245556666777777777775
No 226
>KOG2047|consensus
Probab=47.98 E-value=3.7e+02 Score=31.24 Aligned_cols=60 Identities=22% Similarity=0.180 Sum_probs=25.9
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHH
Q psy11025 320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEE-LKSDAALTLYSRAA 379 (535)
Q Consensus 320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek-~~~~eAie~y~kAa 379 (535)
+=|++|+.-+....|...|++|-..--+..++=++.+...|.+=-. .+.+.|..+.++|.
T Consensus 392 ~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~ 452 (835)
T KOG2047|consen 392 EFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRAT 452 (835)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Confidence 3455555555555555555555443222223333334343433221 23444444444443
No 227
>KOG3785|consensus
Probab=47.79 E-value=4e+02 Score=28.88 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=19.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHHh
Q psy11025 499 VALVLVQLARGDTVAAEKAFKEW 521 (535)
Q Consensus 499 l~a~lc~L~~gD~V~A~~a~~~~ 521 (535)
+..+|-||-.+|+-.|-.-++++
T Consensus 289 lNL~iYyL~q~dVqeA~~L~Kdl 311 (557)
T KOG3785|consen 289 LNLIIYYLNQNDVQEAISLCKDL 311 (557)
T ss_pred hhheeeecccccHHHHHHHHhhc
Confidence 67889999999999998888773
No 228
>KOG3060|consensus
Probab=45.34 E-value=3.1e+02 Score=28.27 Aligned_cols=80 Identities=15% Similarity=0.127 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHhcC
Q psy11025 370 AALTLYSRAADVAHG--EDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE-SEHLLAIGRLAVALVLVQLARG 446 (535)
Q Consensus 370 eAie~y~kAaely~~--egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a-~e~~~~a~rl~la~il~~L~~~ 446 (535)
+|.+.|..|.++|.. ++.+...+-+.+|+|-+-.+ |+-.+||+-+-.--+.|.. -+.....+.+++ ..+
T Consensus 97 Ea~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~-GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~-------~~~ 168 (289)
T KOG3060|consen 97 EATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQ-GKNLEAIKELNEYLDKFMNDQEAWHELAEIYL-------SEG 168 (289)
T ss_pred HHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-------hHh
Confidence 444555555555421 22344444455555544333 3333555555544444443 244444444422 334
Q ss_pred CHHHHHHHHHH
Q psy11025 447 DTVAAEKAFKE 457 (535)
Q Consensus 447 D~vaA~~~~e~ 457 (535)
|+..|.=|||+
T Consensus 169 ~f~kA~fClEE 179 (289)
T KOG3060|consen 169 DFEKAAFCLEE 179 (289)
T ss_pred HHHHHHHHHHH
Confidence 44445555554
No 229
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=43.98 E-value=2.4e+02 Score=31.12 Aligned_cols=99 Identities=15% Similarity=0.058 Sum_probs=56.9
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q psy11025 320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSL-EELKSDAALTLYSRAADVAHGEDNYKQAAEYISRA 398 (535)
Q Consensus 320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~-ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~ka 398 (535)
.++.++..-|+.++|.+.|.+|......-+....-|+.+-+-++ -..++++|.+++.+-.+ +.+.+.|--.|..+
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~----~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK----ESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh----ccccHHHHHHHHHH
Confidence 35555666667788888888777544333333333444444433 34557777666654333 44556666666666
Q ss_pred HHHHHHhhhH-------HHHHHHHHHHHHHHH
Q psy11025 399 ARMCVRVKEF-------DKAADLIRQEIGYHQ 423 (535)
Q Consensus 399 Ael~e~~~~y-------~~Aie~ye~~~~~~~ 423 (535)
+-+.+. ++. ++|.++|+++..+..
T Consensus 348 ~c~~~l-~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 348 ACLLML-GREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHhh-ccchhhhhhHHHHHHHHHHHHHHHh
Confidence 654443 333 677777777766554
No 230
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=43.61 E-value=1.9e+02 Score=24.14 Aligned_cols=74 Identities=16% Similarity=0.167 Sum_probs=46.1
Q ss_pred HhchHHHHHHHHHHHHHHHhCHH-----HHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Q psy11025 328 AADVAHGEDNYKQAAEYISRNRE-----AASTVLEKGAKSLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARM 401 (535)
Q Consensus 328 AA~~~eAa~af~kAA~~y~~~~~-----~AA~~l~~AAk~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel 401 (535)
.+++..|.+.+.+.-+....+.. .-..++..-|.+.... ++++|+..+++|+.+-...+....=+.++.-.+.|
T Consensus 11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~~~l 90 (94)
T PF12862_consen 11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWLANL 90 (94)
T ss_pred cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 45677888888887777654211 2233344445554444 58999999999999977776555544555444443
No 231
>KOG0624|consensus
Probab=42.90 E-value=2e+02 Score=30.89 Aligned_cols=97 Identities=13% Similarity=0.131 Sum_probs=57.3
Q ss_pred HHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q psy11025 322 LTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEE-LKSDAALTLYSRAADVAHGEDNYKQAAEYISRAAR 400 (535)
Q Consensus 322 A~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek-~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAe 400 (535)
+.||...+++-+|.....+.-+ -.+++ ++.|.+=|.+|-- ..+++||.-|++|-++-....+.+...+.-+++-+
T Consensus 314 c~C~~~d~~~~eAiqqC~evL~---~d~~d-v~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkk 389 (504)
T KOG0624|consen 314 CTCYREDEQFGEAIQQCKEVLD---IDPDD-VQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKK 389 (504)
T ss_pred eecccccCCHHHHHHHHHHHHh---cCchH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHH
Confidence 4678888877777665544432 23443 4556665666653 45899999999999987666444444333333332
Q ss_pred HHHH-----------hhhHHHHHHHHHHHHHHH
Q psy11025 401 MCVR-----------VKEFDKAADLIRQEIGYH 422 (535)
Q Consensus 401 l~e~-----------~~~y~~Aie~ye~~~~~~ 422 (535)
...+ .-.-.+-++.|++.+..+
T Consensus 390 qs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkW 422 (504)
T KOG0624|consen 390 QSGKRDYYKILGVKRNASKQEITKAYRKLAQKW 422 (504)
T ss_pred HhccchHHHHhhhcccccHHHHHHHHHHHHHhc
Confidence 2222 123345667777777554
No 232
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=41.98 E-value=3.6e+02 Score=29.15 Aligned_cols=32 Identities=13% Similarity=-0.041 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Q psy11025 371 ALTLYSRAADVAHGEDNYKQAAEYISRAARMC 402 (535)
Q Consensus 371 Aie~y~kAaely~~egr~~~Aa~~l~kaAel~ 402 (535)
+.=.+.-|+.-|...|+...|..||.++-.+|
T Consensus 369 ~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY 400 (414)
T PF12739_consen 369 YAFHMVLAGHRYSKAGQKKHALRCYKQALQVY 400 (414)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 33333444444444444444444444444444
No 233
>KOG4814|consensus
Probab=41.90 E-value=87 Score=35.98 Aligned_cols=66 Identities=9% Similarity=0.118 Sum_probs=49.4
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy11025 356 LEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY 421 (535)
Q Consensus 356 l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~ 421 (535)
...|++.++-.++..++++|......|..+.-.+.=++.+...+-.|...++.++|.++|+++.+.
T Consensus 358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~ 423 (872)
T KOG4814|consen 358 WNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV 423 (872)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Confidence 456677777777888888888888887666443433777777887888888888888888887543
No 234
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=41.78 E-value=2.8e+02 Score=30.57 Aligned_cols=86 Identities=19% Similarity=0.152 Sum_probs=51.4
Q ss_pred HHHHHHH--HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH---------hhHHHH---HHH
Q psy11025 368 SDAALTL--YSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE---------SEHLLA---IGR 433 (535)
Q Consensus 368 ~~eAie~--y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a---------~e~~~~---a~r 433 (535)
++-|+++ ++.|.++-...+.. .+++++|++....|+++-|.+.|++..++-.- .+.+.+ .+.
T Consensus 325 FeLAl~lg~L~~A~~~a~~~~~~----~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 325 FELALQLGNLDIALEIAKELDDP----EKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHHHCT-HHHHHHHCCCCSTH----HHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred hHHHHhcCCHHHHHHHHHhcCcH----HHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHH
Confidence 3444444 45555554444432 28899999999999999999999998765311 111111 111
Q ss_pred ---HHHHHHHHHHhcCCHHHHHHHHHH
Q psy11025 434 ---LAVALVLVQLARGDTVAAEKAFKE 457 (535)
Q Consensus 434 ---l~la~il~~L~~~D~vaA~~~~e~ 457 (535)
-...++.|.+..||.....+++.+
T Consensus 401 ~~~~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 401 ERGDINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HTT-HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HccCHHHHHHHHHHcCCHHHHHHHHHH
Confidence 123356777778888777777765
No 235
>KOG1941|consensus
Probab=41.76 E-value=4.9e+02 Score=28.28 Aligned_cols=100 Identities=14% Similarity=0.055 Sum_probs=71.8
Q ss_pred HHHHHHHhchHHHHHHHHHHHHHHHh-------CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHH
Q psy11025 322 LTLYSRAADVAHGEDNYKQAAEYISR-------NREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEY 394 (535)
Q Consensus 322 A~lYekAA~~~eAa~af~kAA~~y~~-------~~~~AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~ 394 (535)
.++|.+--++++|.-...+|+++-.. .+..++..|--|.-.-.+...-+|.++-++|..+-...|.-..-+.|
T Consensus 169 gslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc 248 (518)
T KOG1941|consen 169 GSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARC 248 (518)
T ss_pred HHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHH
Confidence 45666666667777777777777532 23445555555444444445788999999999998888877788899
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy11025 395 ISRAARMCVRVKEFDKAADLIRQEIGY 421 (535)
Q Consensus 395 l~kaAel~e~~~~y~~Aie~ye~~~~~ 421 (535)
+.-.|+||-..++.+.|-.-||++...
T Consensus 249 ~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 249 LLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 999999998888877777777776444
No 236
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=41.62 E-value=1.4e+02 Score=31.08 Aligned_cols=121 Identities=17% Similarity=0.193 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhccC
Q psy11025 388 YKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE----SEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGNCCE 463 (535)
Q Consensus 388 ~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a----~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~~~~ 463 (535)
...|...+..+|+++.-..+|..|++++|+..+.... .+.......++.+ +|-+.. .|-.-.++|.+
T Consensus 31 ~~~a~~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~s--LcvvGI----QALAEmnrWre--- 101 (309)
T PF07163_consen 31 PSPAVSLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCS--LCVVGI----QALAEMNRWRE--- 101 (309)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhh--hhhhhH----HHHHHHhhHHH---
Confidence 3467789999999998889999999999999877633 2222222222221 222211 01111222222
Q ss_pred CCCccccccccccccccccchhhhhhhHH-HHHHHHHHHHHHHhccCCHHHHHHHHHHh---cCCCCchhhhcc
Q psy11025 464 APERCESGSSSFSFSLGKAGYHQESEHLL-AIGRLAVALVLVQLARGDTVAAEKAFKEW---GNCCEAPEINSH 533 (535)
Q Consensus 464 ~~~f~~sre~~~l~~L~l~ay~~~~~~~~-~~~~l~l~a~lc~L~~gD~V~A~~a~~~~---~~F~~s~E~~~~ 533 (535)
.+- + +..|++.-++.+ .|-. +. ||+|--+++.-++...-..| |+-.+..||.++
T Consensus 102 ----------VLs--W-vlqyYq~pEklPpkIle--LC-ILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~v 159 (309)
T PF07163_consen 102 ----------VLS--W-VLQYYQVPEKLPPKILE--LC-ILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTV 159 (309)
T ss_pred ----------HHH--H-HHHHhcCcccCCHHHHH--HH-HHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHH
Confidence 111 1 234444433333 2222 22 67777888988888888875 888888888764
No 237
>KOG3081|consensus
Probab=41.15 E-value=2.6e+02 Score=28.95 Aligned_cols=8 Identities=25% Similarity=0.588 Sum_probs=3.7
Q ss_pred HHHHhccC
Q psy11025 502 VLVQLARG 509 (535)
Q Consensus 502 ~lc~L~~g 509 (535)
++|-+..|
T Consensus 248 iv~a~~~G 255 (299)
T KOG3081|consen 248 IVLALHLG 255 (299)
T ss_pred HHHHHHhC
Confidence 44444444
No 238
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=40.30 E-value=59 Score=20.78 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=15.1
Q ss_pred HHHHHHHHHhCC-HHHHHHHHHHHHHHH
Q psy11025 356 LEKGAKSLEELK-SDAALTLYSRAADVA 382 (535)
Q Consensus 356 l~~AAk~~ek~~-~~eAie~y~kAaely 382 (535)
+.+.|.++.+.+ +++|++.|++.++-|
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 445555555543 666666666655544
No 239
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=40.27 E-value=2.8e+02 Score=31.10 Aligned_cols=60 Identities=12% Similarity=0.143 Sum_probs=35.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025 397 RAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGN 460 (535)
Q Consensus 397 kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~ 460 (535)
+.|-..-+.|+..+||+.|++..+.+-..+.++ +.... +-|.|..+.+..++..+.+|.+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~-IrenL---ie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLN-IRENL---IEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhh-HHHHH---HHHHHhcCCHHHHHHHHHHhcc
Confidence 344444457999999999999877664333222 22121 2445555555557777777643
No 240
>KOG4642|consensus
Probab=39.75 E-value=84 Score=32.01 Aligned_cols=70 Identities=20% Similarity=0.133 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHhC-----------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy11025 316 LKPDAALTLYSRAAD-VAHGEDNYKQAAEYISRN-----------------REAASTVLEKGAKSLEELKSDAALTLYSR 377 (535)
Q Consensus 316 ~K~D~AA~lYekAA~-~~eAa~af~kAA~~y~~~-----------------~~~AA~~l~~AAk~~ek~~~~eAie~y~k 377 (535)
-++++|.++|.+|=- -.-.+..|..=|.||.+. +..+-.+|...+=.++..+..+||..+++
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 488999999999853 233445666666666542 12223334443334444557888888888
Q ss_pred HHHHHhcC
Q psy11025 378 AADVAHGE 385 (535)
Q Consensus 378 Aaely~~e 385 (535)
|-+++...
T Consensus 104 a~sl~r~~ 111 (284)
T KOG4642|consen 104 AYSLLREQ 111 (284)
T ss_pred HHHHHhcC
Confidence 88886554
No 241
>KOG1914|consensus
Probab=39.65 E-value=6.3e+02 Score=28.86 Aligned_cols=20 Identities=15% Similarity=0.140 Sum_probs=14.6
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q psy11025 438 LVLVQLARGDTVAAEKAFKE 457 (535)
Q Consensus 438 ~il~~L~~~D~vaA~~~~e~ 457 (535)
+++=+-|.+|.+.|.++|+-
T Consensus 407 A~mEy~cskD~~~AfrIFeL 426 (656)
T KOG1914|consen 407 ALMEYYCSKDKETAFRIFEL 426 (656)
T ss_pred HHHHHHhcCChhHHHHHHHH
Confidence 34556678888888888873
No 242
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=39.41 E-value=2e+02 Score=23.02 Aligned_cols=36 Identities=22% Similarity=0.286 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Q psy11025 368 SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVR 404 (535)
Q Consensus 368 ~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~ 404 (535)
.++|+++..+|++.=. .|+...|..+|.++++.+..
T Consensus 5 ~~~A~~li~~Av~~d~-~g~~~eAl~~Y~~a~e~l~~ 40 (77)
T smart00745 5 LSKAKELISKALKADE-AGDYEEALELYKKAIEYLLE 40 (77)
T ss_pred HHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHH
Confidence 3455555555544332 34455555555555554443
No 243
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=38.78 E-value=2.6e+02 Score=24.23 Aligned_cols=92 Identities=17% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHhchHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Q psy11025 324 LYSRAADVAHGEDNYKQAAEYISRN-REAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMC 402 (535)
Q Consensus 324 lYekAA~~~eAa~af~kAA~~y~~~-~~~AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~ 402 (535)
+|...+.+.+|..+|.++.. .... ...+...+..........+.+.|+..+.++....... ....+..++..+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 212 (291)
T COG0457 139 ALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD-----DAEALLNLGLLY 212 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-----chHHHHHhhHHH
Q ss_pred HHhhhHHHHHHHHHHHHHH
Q psy11025 403 VRVKEFDKAADLIRQEIGY 421 (535)
Q Consensus 403 e~~~~y~~Aie~ye~~~~~ 421 (535)
...+++.+|+..+......
T Consensus 213 ~~~~~~~~a~~~~~~~~~~ 231 (291)
T COG0457 213 LKLGKYEEALEYYEKALEL 231 (291)
T ss_pred HHcccHHHHHHHHHHHHhh
No 244
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=38.56 E-value=94 Score=32.55 Aligned_cols=63 Identities=17% Similarity=0.212 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q psy11025 392 AEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKEWGN 460 (535)
Q Consensus 392 a~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~~ 460 (535)
.+.+.++|.-|...+.|.+|+++.++...+-.-.+...+.-.. +++ ..||...|++-|++|+.
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~----~la--~~gD~is~~khyerya~ 341 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMA----SLA--TLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHH----HHH--HhccchhhhhHHHHHHH
Confidence 4677888888888999999999999987655444443333211 122 35899999999998765
No 245
>KOG4648|consensus
Probab=37.88 E-value=1.1e+02 Score=32.68 Aligned_cols=53 Identities=17% Similarity=0.084 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHhCHH---HHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHh
Q psy11025 331 VAHGEDNYKQAAEYISRNRE---AASTVLEKGAKSLE-ELKSDAALTLYSRAADVAH 383 (535)
Q Consensus 331 ~~eAa~af~kAA~~y~~~~~---~AA~~l~~AAk~~e-k~~~~eAie~y~kAaely~ 383 (535)
+++|.+||-++..++--++- --|.+|.+.-++.- +.|-..|+.+=..-+..|.
T Consensus 113 y~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYS 169 (536)
T KOG4648|consen 113 YEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYS 169 (536)
T ss_pred hhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Confidence 44555555555444321211 13444444333322 2334455555444444443
No 246
>KOG0985|consensus
Probab=35.34 E-value=6.1e+02 Score=31.31 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy11025 368 SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYH 422 (535)
Q Consensus 368 ~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~ 422 (535)
..+||+.|.+| +.++ .|..+.++.++.|.|++=+.++.-+.+..
T Consensus 1120 v~dAieSyika-------dDps----~y~eVi~~a~~~~~~edLv~yL~MaRkk~ 1163 (1666)
T KOG0985|consen 1120 VKDAIESYIKA-------DDPS----NYLEVIDVASRTGKYEDLVKYLLMARKKV 1163 (1666)
T ss_pred hHHHHHHHHhc-------CCcH----HHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 55666666654 3333 35677888888899999998887776543
No 247
>KOG1550|consensus
Probab=35.13 E-value=3.4e+02 Score=30.62 Aligned_cols=50 Identities=18% Similarity=0.361 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy11025 367 KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGY 421 (535)
Q Consensus 367 ~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~ 421 (535)
+.+.|+.+|.+|+++=.-.+.+..+.-++... ...++.+|.++|..++..
T Consensus 308 d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~-----~~~d~~~A~~yy~~Aa~~ 357 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGNPDAQYLLGVLYETGT-----KERDYRRAFEYYSLAAKA 357 (552)
T ss_pred cHHHHHHHHHHHHhcCCchHHHHHHHHHHcCC-----ccccHHHHHHHHHHHHHc
Confidence 45778888888888755554332222222222 224677888888777644
No 248
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=34.32 E-value=6.3e+02 Score=28.50 Aligned_cols=14 Identities=21% Similarity=0.079 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHH
Q psy11025 368 SDAALTLYSRAADV 381 (535)
Q Consensus 368 ~~eAie~y~kAael 381 (535)
..+|.++|++|.+.
T Consensus 216 i~Eae~l~rqAvkA 229 (539)
T PF04184_consen 216 IVEAEELLRQAVKA 229 (539)
T ss_pred HHHHHHHHHHHHHH
Confidence 67888888887654
No 249
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=33.92 E-value=2.6e+02 Score=28.48 Aligned_cols=104 Identities=10% Similarity=0.015 Sum_probs=63.3
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHH-HHhcC------------
Q psy11025 320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEE-LKSDAALTLYSRAAD-VAHGE------------ 385 (535)
Q Consensus 320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek-~~~~eAie~y~kAae-ly~~e------------ 385 (535)
.-+.+..++|++.-|..++.++................+-||.+=. .+..+|+..+...++ .+...
T Consensus 151 ~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~ 230 (352)
T PF02259_consen 151 KFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSG 230 (352)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhc
Confidence 4566777777788788877776654311111122233333454443 347788888777777 22211
Q ss_pred ---------------CcHHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHHHHHH
Q psy11025 386 ---------------DNYKQAAEYISRAARMCVRV------KEFDKAADLIRQEIGYHQ 423 (535)
Q Consensus 386 ---------------gr~~~Aa~~l~kaAel~e~~------~~y~~Aie~ye~~~~~~~ 423 (535)
......++++...|+..... +.+++++..|..+.....
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 289 (352)
T PF02259_consen 231 LLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDP 289 (352)
T ss_pred cccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhCh
Confidence 22356667888888877777 777888888887765543
No 250
>KOG1498|consensus
Probab=33.80 E-value=5.9e+02 Score=27.83 Aligned_cols=65 Identities=18% Similarity=0.131 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy11025 392 AEYISRAARMCVRVKEFDKAADLIRQE-IGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE 457 (535)
Q Consensus 392 a~~l~kaAel~e~~~~y~~Aie~ye~~-~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~ 457 (535)
+..-+-.+++.+..|+..+|++++... .+.|-+.+...+..-+ +-+.=..|.+.|++.|..+-.+
T Consensus 131 arlTk~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fi-LEQmrKOG~~~D~vra~i~skK 196 (439)
T KOG1498|consen 131 ARLTKMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFI-LEQMRLCLLRLDYVRAQIISKK 196 (439)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHH
Confidence 445567788888899999999987765 3555554433333211 1111113347899998655544
No 251
>KOG2908|consensus
Probab=32.91 E-value=5e+02 Score=27.81 Aligned_cols=30 Identities=13% Similarity=0.111 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025 491 LLAIGRLAVALVLVQLARGDTVAAEKAFKE 520 (535)
Q Consensus 491 ~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~ 520 (535)
.+.+.++....+.|.|-.||...+++.+.+
T Consensus 111 ~~av~~~~t~~~r~~L~i~DLk~~kk~ldd 140 (380)
T KOG2908|consen 111 PDAVIYILTEIARLKLEINDLKEIKKLLDD 140 (380)
T ss_pred chhHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 577888889999999999999999999987
No 252
>KOG1497|consensus
Probab=32.73 E-value=6.4e+02 Score=26.92 Aligned_cols=99 Identities=18% Similarity=0.111 Sum_probs=67.3
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHh----CHHH------HHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcH
Q psy11025 320 AALTLYSRAADVAHGEDNYKQAAEYISR----NREA------ASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNY 388 (535)
Q Consensus 320 ~AA~lYekAA~~~eAa~af~kAA~~y~~----~~~~------AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~ 388 (535)
.++.+-.+-|+.+++-..|..||..... .++. =...+.+.+++|-+.+ +.+|-.+..+|.=+.....+.
T Consensus 101 qv~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne 180 (399)
T KOG1497|consen 101 QVASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNE 180 (399)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCH
Confidence 5555555555555555566666655532 2222 2456778888887765 899999999998887777666
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy11025 389 KQAAEYISRAARMCVRVKEFDKAADLIRQE 418 (535)
Q Consensus 389 ~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~ 418 (535)
.--.++..=-|+++---++|-+|+.-|-+.
T Consensus 181 ~Lqie~kvc~ARvlD~krkFlEAAqrYyel 210 (399)
T KOG1497|consen 181 QLQIEYKVCYARVLDYKRKFLEAAQRYYEL 210 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677666777777778888888777644
No 253
>PF14649 Spatacsin_C: Spatacsin C-terminus
Probab=32.49 E-value=2.4e+02 Score=29.40 Aligned_cols=86 Identities=15% Similarity=0.157 Sum_probs=57.0
Q ss_pred cCCHHHHHHHHHHHhc----hHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH--HHH-----hCCHHHHHHHHHHHHHHHh
Q psy11025 315 ELKPDAALTLYSRAAD----VAHGEDNYKQAAEYISRNREAASTVLEKGAK--SLE-----ELKSDAALTLYSRAADVAH 383 (535)
Q Consensus 315 k~K~D~AA~lYekAA~----~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk--~~e-----k~~~~eAie~y~kAaely~ 383 (535)
+-.|.+- ++|.-++. +.|.|..+++.|....+. ++.-.. .+. +.....|+++|..|++.|.
T Consensus 115 ~~~P~d~-e~~~mv~l~F~m~~Eia~~~e~~A~~~l~~-------l~~~~~~~~l~~~~~~~~~L~~am~~~~~AAe~yl 186 (296)
T PF14649_consen 115 RCCPEDK-EKFSMVALHFNMYREIAELWEKRARQILKK-------LVSQPWEESLRDNPELKSELLEAMENFTDAAENYL 186 (296)
T ss_pred hcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhccccccccCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455544 67777665 456777777766654321 111110 000 1125689999999999999
Q ss_pred cCCcHHHHHHHHHHHHHHHHHhhhH
Q psy11025 384 GEDNYKQAAEYISRAARMCVRVKEF 408 (535)
Q Consensus 384 ~egr~~~Aa~~l~kaAel~e~~~~y 408 (535)
.++....|.+|..++--+..+....
T Consensus 187 k~~~~~~A~~c~~~a~LvaLQi~l~ 211 (296)
T PF14649_consen 187 KDNCLRLAQRCAAQAQLVALQIRLL 211 (296)
T ss_pred hcchHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999998777775544
No 254
>KOG0686|consensus
Probab=32.42 E-value=3.3e+02 Score=29.83 Aligned_cols=52 Identities=15% Similarity=0.248 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCH
Q psy11025 394 YISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDT 448 (535)
Q Consensus 394 ~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~ 448 (535)
.+...+..|...|++..|+..|-++.+++...+..-+.+.- .+.+.++.++.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln---~i~VSI~~~nw 203 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLN---LILVSIYMGNW 203 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHH---HHHHHHhhcch
Confidence 34566667777777777777777766666555544444322 23444444554
No 255
>KOG1173|consensus
Probab=31.78 E-value=2.5e+02 Score=31.84 Aligned_cols=55 Identities=16% Similarity=0.234 Sum_probs=41.8
Q ss_pred HHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy11025 359 GAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEI 419 (535)
Q Consensus 359 AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~ 419 (535)
.+..+.+.+ .++||.+|++|..+-... +..+--+|=++.-.|+++.||+.|-++.
T Consensus 461 LGH~~Rkl~~~~eAI~~~q~aL~l~~k~------~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 461 LGHAYRKLNKYEEAIDYYQKALLLSPKD------ASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcCCCc------hhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 344455555 789999999998876555 3456677888888999999999998874
No 256
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=31.73 E-value=83 Score=20.64 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=16.1
Q ss_pred HHHHHHHHHh-----CCHHHHHHHHHHHHHH
Q psy11025 356 LEKGAKSLEE-----LKSDAALTLYSRAADV 381 (535)
Q Consensus 356 l~~AAk~~ek-----~~~~eAie~y~kAael 381 (535)
....+.+|.. .|+.+|+.+|++|++.
T Consensus 4 ~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 4 QYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 3444555543 3577788888887753
No 257
>PF14711 Nitr_red_bet_C: Respiratory nitrate reductase beta C-terminal; PDB: 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B 1Y4Z_B 1Y5L_B 3IR6_B 3IR5_B ....
Probab=31.24 E-value=31 Score=29.09 Aligned_cols=38 Identities=16% Similarity=0.377 Sum_probs=29.4
Q ss_pred ccCCCcHHhhhhHHHHHHH-hhcCHHHHHHHHHHhcCCC
Q psy11025 52 DFFPDLEKLHAQNDFLDAM-ELNDVQKLRELYAKYSNST 89 (535)
Q Consensus 52 DfFPdL~kl~~q~eyL~A~-~s~D~~~i~~~~~~~~~~~ 89 (535)
++||++.+||.=.+||.-+ -.||.+-|+.+.+|+..||
T Consensus 20 ~~~p~id~lRIPi~YLAnLftAGd~~~V~~~L~rL~AmR 58 (83)
T PF14711_consen 20 GIFPAIDSLRIPIEYLANLFTAGDEEPVRRALKRLLAMR 58 (83)
T ss_dssp BTS--GGGBSS-HHHHHHHHSTT-HHHHHHHHHHHHHHH
T ss_pred cccchHHHhcccHHHHHHHHccCChHHHHHHHHHHHHHH
Confidence 7999999999999999875 5689999999999987544
No 258
>KOG1174|consensus
Probab=31.05 E-value=3.8e+02 Score=29.59 Aligned_cols=50 Identities=8% Similarity=0.090 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy11025 368 SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ 423 (535)
Q Consensus 368 ~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~ 423 (535)
-+.|-.+|+++..+--+= .....++|+|....|.|.++|.++|+....|.
T Consensus 420 rEKAKkf~ek~L~~~P~Y------~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~ 469 (564)
T KOG1174|consen 420 REKAKKFAEKSLKINPIY------TPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP 469 (564)
T ss_pred HHHHHHHHHhhhccCCcc------HHHHHHHHHHHHhhCccchHHHHHHHHHhhcc
Confidence 356777777666551110 12345778888888999999999988754443
No 259
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.36 E-value=2.6e+02 Score=27.34 Aligned_cols=14 Identities=14% Similarity=0.242 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHH
Q psy11025 332 AHGEDNYKQAAEYI 345 (535)
Q Consensus 332 ~eAa~af~kAA~~y 345 (535)
.++++.|..|-+.-
T Consensus 56 s~sgd~flaAL~lA 69 (221)
T COG4649 56 SKSGDAFLAALKLA 69 (221)
T ss_pred ccchHHHHHHHHHH
Confidence 45566666655544
No 260
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=30.27 E-value=3.1e+02 Score=22.57 Aligned_cols=21 Identities=5% Similarity=-0.012 Sum_probs=14.2
Q ss_pred HhhhHHHHHHHHHHHHHHHHH
Q psy11025 404 RVKEFDKAADLIRQEIGYHQE 424 (535)
Q Consensus 404 ~~~~y~~Aie~ye~~~~~~~a 424 (535)
+.|+|++|+.+|....+.+..
T Consensus 18 ~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 18 QEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HccCHHHHHHHHHHHHHHHHH
Confidence 346777777777777666644
No 261
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=29.48 E-value=1.2e+02 Score=21.52 Aligned_cols=30 Identities=23% Similarity=0.210 Sum_probs=18.3
Q ss_pred HHHHHHHHHhCC-HHHHHHHHHHHHHHHhcC
Q psy11025 356 LEKGAKSLEELK-SDAALTLYSRAADVAHGE 385 (535)
Q Consensus 356 l~~AAk~~ek~~-~~eAie~y~kAaely~~e 385 (535)
+..-|..|...+ +++|+++|++++...-+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 344455665543 777777777777765433
No 262
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=28.75 E-value=1.4e+02 Score=24.68 Aligned_cols=20 Identities=10% Similarity=0.149 Sum_probs=17.3
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q psy11025 405 VKEFDKAADLIRQEIGYHQE 424 (535)
Q Consensus 405 ~~~y~~Aie~ye~~~~~~~a 424 (535)
.|+|++|+++|..+.++|..
T Consensus 19 ~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 19 KGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 48999999999999888876
No 263
>KOG1127|consensus
Probab=28.65 E-value=7.4e+02 Score=30.40 Aligned_cols=83 Identities=12% Similarity=0.158 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHH--------------HHHhC-CHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q psy11025 333 HGEDNYKQAAEYISRNREAASTVLEKGAK--------------SLEEL-KSDAALTLYSRAADVAHGEDNYKQAAEYISR 397 (535)
Q Consensus 333 eAa~af~kAA~~y~~~~~~AA~~l~~AAk--------------~~ek~-~~~eAie~y~kAaely~~egr~~~Aa~~l~k 397 (535)
.++..|..|..|.+++...|=.+|.+|.+ +|... |...|-.||.+|.++=.++ ..|+ .-
T Consensus 458 ~e~~~~w~a~~~~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatd---aeaa---aa 531 (1238)
T KOG1127|consen 458 CENSEFWVALGCMRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATD---AEAA---AA 531 (1238)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh---hhhH---HH
Confidence 45556666666666665555555555554 33333 4678888888887763333 2222 24
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHH
Q psy11025 398 AARMCVRVKEFDKAADLIRQEIGY 421 (535)
Q Consensus 398 aAel~e~~~~y~~Aie~ye~~~~~ 421 (535)
+++.|++....+.|.++.-..++.
T Consensus 532 ~adtyae~~~we~a~~I~l~~~qk 555 (1238)
T KOG1127|consen 532 SADTYAEESTWEEAFEICLRAAQK 555 (1238)
T ss_pred HHHHhhccccHHHHHHHHHHHhhh
Confidence 567888888888888886666544
No 264
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=28.41 E-value=6.6e+02 Score=25.72 Aligned_cols=53 Identities=15% Similarity=0.193 Sum_probs=35.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy11025 398 AARMCVRVKEFDKAADLIRQEIGYHQES-EHLLAIGRLAVALVLVQLARGDTVAAEKAFKE 457 (535)
Q Consensus 398 aAel~e~~~~y~~Aie~ye~~~~~~~a~-e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~ 457 (535)
.++..-+.|+|.+|+..+.++..+.-.. +.+.-- .++....|+.+.|...|.+
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l-------gaaldq~Gr~~~Ar~ay~q 159 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL-------GAALDQLGRFDEARRAYRQ 159 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH-------HHHHHHccChhHHHHHHHH
Confidence 4555667899999999999987654332 222222 2445556788889999886
No 265
>PF07834 RanGAP1_C: RanGAP1 C-terminal domain; InterPro: IPR009109 Ran GTPase is a ubiquitous protein required for nuclear transport, spindle assembly, nuclear assembly and mitotic cell cycle regulation. RanGTPase activating protein 1 (RanGAP1) is one of several RanGTPase accessory proteins. During interphase, RanGAP1 is located in the cytoplasm, while during mitosis it becomes associated with the kinetochores []. Cytoplasmic RanGAP1 is required for RanGTPase-directed nuclear transport. The activity of RanGAP1 requires the accessory protein RanBP1. RanBP1 facilitates RanGAP1 hydrolysis of Ran-GTP, both directly and by promoting the dissociation of Ran-GTP from transport receptors, which would otherwise block RanGAP1-mediated hydrolysis. RanGAP1 is thought to bind to the Switch 1 and Switch 2 regions of RanGTPase. The Switch 2 region can be buried in complexes with karyopherin-beta2, and requires the interaction with RanBP1 to permit RanGAP1 function. RanGAP1 can undergo SUMO (small ubiquitin-like modifier) modification, which targets RanGAP1 to RanBP2/Nup358 in the nuclear pore complex, and is required for association with the nuclear pore complex and for nuclear transport []. The enzymes involved in SUMO modification are located on the filaments of the nuclear pore complex. The RanGAP1 N-terminal domain is fairly well conserved between vertebrate and fungal proteins, but yeast does not contain the C-terminal domain. The C-terminal domain is SUMO-modified and required for the localisation of RanGAP1 at the nuclear pore complex. The structure of the C-terminal domain is multihelical, consisting of two curved alpha/alpha layers in a right-handed superhelix.; GO: 0005098 Ran GTPase activator activity, 0007165 signal transduction; PDB: 2IO2_C 2GRQ_B 3UIN_C 2GRO_B 3UIP_C 2IO3_C 2GRN_B 3UIO_C 2GRP_B 2GRR_B ....
Probab=28.41 E-value=25 Score=33.98 Aligned_cols=15 Identities=20% Similarity=0.640 Sum_probs=12.3
Q ss_pred HHHHHhhhhhccCCC
Q psy11025 42 EQKIAEIIERDFFPD 56 (535)
Q Consensus 42 ~~~L~~II~RDfFPd 56 (535)
.-+|+||.++||||-
T Consensus 136 l~~Leh~vqq~YFp~ 150 (183)
T PF07834_consen 136 LLALEHAVQQDYFPK 150 (183)
T ss_dssp HHHHHHHCCSTTS-G
T ss_pred HHHHHHHhhhhhccH
Confidence 458999999999995
No 266
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=28.08 E-value=1.3e+02 Score=25.14 Aligned_cols=15 Identities=20% Similarity=0.310 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy11025 368 SDAALTLYSRAADVA 382 (535)
Q Consensus 368 ~~eAie~y~kAaely 382 (535)
+++|+.+|++|+.+.
T Consensus 24 ~e~Al~~Y~~gi~~l 38 (79)
T cd02679 24 KEQALAHYRKGLREL 38 (79)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555543
No 267
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=27.45 E-value=4.9e+02 Score=23.91 Aligned_cols=104 Identities=16% Similarity=0.199 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc---CCcHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh-
Q psy11025 354 TVLEKGAKSLEELKSDAALTLYSRAADVAHG---EDNYK---QAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESE- 426 (535)
Q Consensus 354 ~~l~~AAk~~ek~~~~eAie~y~kAaely~~---egr~~---~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e- 426 (535)
.+|-++-+-++...+++|...|.+|.++-.. ++-|+ .=+=|+--.+.-+..+++|++++..-+.+..+|.--+
T Consensus 11 ~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGE 90 (144)
T PF12968_consen 11 MALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGE 90 (144)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccc
Confidence 3455555666666678888888888887322 23343 2345666677777888999998888888777775432
Q ss_pred HHHHHHHHHHHHHHH----HHhcCCHHHHHHHHHH
Q psy11025 427 HLLAIGRLAVALVLV----QLARGDTVAAEKAFKE 457 (535)
Q Consensus 427 ~~~~a~rl~la~il~----~L~~~D~vaA~~~~e~ 457 (535)
....-+++++++|.- .-..|-...|.+.|+.
T Consensus 91 L~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 91 LHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRM 125 (144)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cccccchhHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 222334555544321 1224444447777765
No 268
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=27.20 E-value=5.9e+02 Score=25.81 Aligned_cols=102 Identities=19% Similarity=0.235 Sum_probs=58.5
Q ss_pred HHHHHHHHHhchH-HHHHHHHHHHHH-HH--hCHHHHHHHHHHHHHHHH--------------hC-CHHHHHHHHHHHHH
Q psy11025 320 AALTLYSRAADVA-HGEDNYKQAAEY-IS--RNREAASTVLEKGAKSLE--------------EL-KSDAALTLYSRAAD 380 (535)
Q Consensus 320 ~AA~lYekAA~~~-eAa~af~kAA~~-y~--~~~~~AA~~l~~AAk~~e--------------k~-~~~eAie~y~kAae 380 (535)
.|-..|.+|-... -.-+.|...|.+ |. +.+..|-+.|+.+.+.+- +. +.+.|-.+|++|+.
T Consensus 19 ~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~ 98 (280)
T PF05843_consen 19 AARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAIS 98 (280)
T ss_dssp HHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 4555566654321 123455555555 22 122335555665555553 22 46777778888776
Q ss_pred HHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy11025 381 VAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQE 424 (535)
Q Consensus 381 ly~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a 424 (535)
....+ ..+...+++..++=.+.|+.+....++++..+.+..
T Consensus 99 ~l~~~---~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 99 SLPKE---KQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp TSSCH---HHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred hcCch---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 63222 226667777777777778888888888887766644
No 269
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=27.18 E-value=3.7e+02 Score=22.39 Aligned_cols=36 Identities=17% Similarity=0.050 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Q psy11025 368 SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVR 404 (535)
Q Consensus 368 ~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~ 404 (535)
++.|.++..+|..+-+. |....|..+|++.-+++++
T Consensus 5 ~~~A~~~I~kaL~~dE~-g~~e~Al~~Y~~gi~~l~e 40 (79)
T cd02679 5 YKQAFEEISKALRADEW-GDKEQALAHYRKGLRELEE 40 (79)
T ss_pred HHHHHHHHHHHhhhhhc-CCHHHHHHHHHHHHHHHHH
Confidence 56778888888776555 7788888888888887775
No 270
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=26.72 E-value=4.4e+02 Score=24.23 Aligned_cols=93 Identities=16% Similarity=0.048 Sum_probs=49.3
Q ss_pred hchHHHHHHHHHHHHHHHhCH------HH--HHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcC-------CcHHHHH
Q psy11025 329 ADVAHGEDNYKQAAEYISRNR------EA--ASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGE-------DNYKQAA 392 (535)
Q Consensus 329 A~~~eAa~af~kAA~~y~~~~------~~--AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~e-------gr~~~Aa 392 (535)
|.+.+|+..|.+|-++-+..| +. =|-|+--.+..+-... ++++...-.+|..+|+.- |+.=-++
T Consensus 23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaa 102 (144)
T PF12968_consen 23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAA 102 (144)
T ss_dssp T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHH
Confidence 346777777888877765432 11 1233333344444443 666666666665555443 3332332
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy11025 393 EYISRAARMCVRVKEFDKAADLIRQEIGYHQ 423 (535)
Q Consensus 393 ~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~ 423 (535)
=+ .++. -++..|+.++|+..|..+++...
T Consensus 103 Vf-sra~-Al~~~Gr~~eA~~~fr~agEMia 131 (144)
T PF12968_consen 103 VF-SRAV-ALEGLGRKEEALKEFRMAGEMIA 131 (144)
T ss_dssp HH-HHHH-HHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HH-HHHH-HHHhcCChHHHHHHHHHHHHHHH
Confidence 22 2222 23446888889888888776654
No 271
>KOG1127|consensus
Probab=26.46 E-value=4.5e+02 Score=32.08 Aligned_cols=101 Identities=15% Similarity=0.057 Sum_probs=61.6
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHH
Q psy11025 320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNY-KQAAEYISRA 398 (535)
Q Consensus 320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~-~~Aa~~l~ka 398 (535)
.+.+.|-.-|.+.-|.+.|.||... .|..=..-|.+|+--.-.....+|+..|..-+..+..+.-. .--++++.+.
T Consensus 601 gLGeAY~~sGry~~AlKvF~kAs~L---rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~ 677 (1238)
T KOG1127|consen 601 GLGEAYPESGRYSHALKVFTKASLL---RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRD 677 (1238)
T ss_pred HHHHHHHhcCceehHHHhhhhhHhc---CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4555555555566666666666543 33332333444444333344778888887777776555322 2345677777
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHH
Q psy11025 399 ARMCVRVKEFDKAADLIRQEIGYHQ 423 (535)
Q Consensus 399 Ael~e~~~~y~~Aie~ye~~~~~~~ 423 (535)
+..+.-.+-+.+|++++++..+.|-
T Consensus 678 akd~~~~gf~~kavd~~eksie~f~ 702 (1238)
T KOG1127|consen 678 AKDSAITGFQKKAVDFFEKSIESFI 702 (1238)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 7666666888888888888877663
No 272
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=26.27 E-value=1.7e+02 Score=24.03 Aligned_cols=32 Identities=22% Similarity=0.168 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy11025 391 AAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ 423 (535)
Q Consensus 391 Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~ 423 (535)
|..+..++. -..+.|+|++|+.+|.+..+.|.
T Consensus 6 a~~l~~~Av-e~D~~g~y~eAl~~Y~~aie~l~ 37 (77)
T cd02683 6 AKEVLKRAV-ELDQEGRFQEALVCYQEGIDLLM 37 (77)
T ss_pred HHHHHHHHH-HHHHhccHHHHHHHHHHHHHHHH
Confidence 334444443 23345777788777777766554
No 273
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=26.17 E-value=1.6e+02 Score=23.80 Aligned_cols=19 Identities=16% Similarity=0.431 Sum_probs=12.9
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q psy11025 405 VKEFDKAADLIRQEIGYHQ 423 (535)
Q Consensus 405 ~~~y~~Aie~ye~~~~~~~ 423 (535)
.|+|++|+.+|.+..+.+.
T Consensus 19 ~g~y~eA~~~Y~~aie~l~ 37 (75)
T cd02678 19 AGNYEEALRLYQHALEYFM 37 (75)
T ss_pred cCCHHHHHHHHHHHHHHHH
Confidence 4677777777777666554
No 274
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=26.07 E-value=7.9e+02 Score=25.89 Aligned_cols=30 Identities=23% Similarity=0.226 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHHhc---------------hHHHHHHHHHHHHHH
Q psy11025 316 LKPDAALTLYSRAAD---------------VAHGEDNYKQAAEYI 345 (535)
Q Consensus 316 ~K~D~AA~lYekAA~---------------~~eAa~af~kAA~~y 345 (535)
...|-|.-+|.-|+- +.+|..+|.+||-|+
T Consensus 114 l~fEka~vlfNiaal~s~la~~~~~~~~eglK~A~~~fq~AAG~F 158 (346)
T cd09240 114 LGYEKVCVLFNIAALQSQIAAEQNLDTDEGLKLAAKLFQQAAGIF 158 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHH
Confidence 566777777776663 356777777777776
No 275
>KOG0495|consensus
Probab=25.43 E-value=2.6e+02 Score=32.55 Aligned_cols=108 Identities=15% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHh--CHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy11025 338 YKQAAEYISR--NREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADL 414 (535)
Q Consensus 338 f~kAA~~y~~--~~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ 414 (535)
|++|-.++.+ +..-....+.+-+++..-.+ .++|+.++++|...|..-.+ ++...++|+++.++.+.|-+.
T Consensus 634 ~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~K------l~lmlGQi~e~~~~ie~aR~a 707 (913)
T KOG0495|consen 634 LERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHK------LWLMLGQIEEQMENIEMAREA 707 (913)
T ss_pred HHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHH------HHHHHhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy11025 415 IRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE 457 (535)
Q Consensus 415 ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~ 457 (535)
| .++.......--+++...-+.-..|..+.|.-+|++
T Consensus 708 Y------~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildr 744 (913)
T KOG0495|consen 708 Y------LQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDR 744 (913)
T ss_pred H------HhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHH
No 276
>PF12941 HCV_NS5a_C: HCV NS5a protein C-terminal region; InterPro: IPR024350 This entry represents the C-terminal region of the Hepatitus C virus, NS5a protein. The molecular function of the non-structural 5a protein is uncertain. The NS5a protein is phosphorylated when expressed in mammalian cells. It is thought to interact with the dsRNA dependent (interferon inducible) kinase PKR [, ].; PDB: 3M5O_C.
Probab=25.08 E-value=24 Score=34.98 Aligned_cols=31 Identities=19% Similarity=0.447 Sum_probs=0.0
Q ss_pred CCCCcccccCCCCCcCChHHHHHHHHhhhhhcc
Q psy11025 21 TPRPASIRQNAAPSYVSPRDAEQKIAEIIERDF 53 (535)
Q Consensus 21 ~~~p~~~r~k~~~~VLdEd~Y~~~L~~II~RDf 53 (535)
+|-||| |+| +.+||+|.+--.+|.+.-.+-|
T Consensus 145 pPvPPP-RRK-RtVvLteStVs~ALaeLA~KtF 175 (244)
T PF12941_consen 145 PPVPPP-RRK-RTVVLTESTVSSALAELATKTF 175 (244)
T ss_dssp ---------------------------------
T ss_pred CCCCCC-ccc-cccccCcchHHHHHHHhhhhhc
Confidence 444444 333 4799999988888777666555
No 277
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=24.68 E-value=8e+02 Score=30.63 Aligned_cols=30 Identities=20% Similarity=0.251 Sum_probs=24.0
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHhCHH
Q psy11025 321 ALTLYSRAADVAHGEDNYKQAAEYISRNRE 350 (535)
Q Consensus 321 AA~lYekAA~~~eAa~af~kAA~~y~~~~~ 350 (535)
-+++|-.||.|.+|.+.|..|++..+...|
T Consensus 248 ~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D 277 (1185)
T PF08626_consen 248 LGDLYLLAGRWPDALKEYTEAIEILKSSND 277 (1185)
T ss_pred hhhHHHHcCCHHHHHHHHHHHHHHHhhcCc
Confidence 578888888888888888888888776544
No 278
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=24.61 E-value=9.3e+02 Score=26.21 Aligned_cols=119 Identities=13% Similarity=0.107 Sum_probs=74.3
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q psy11025 320 AALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAA 399 (535)
Q Consensus 320 ~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaA 399 (535)
..|.-|.+.+..++|-+.-+++-.-.- .+. +..-.-++.-.++..=++..+++...-.+. + ..+.-.+
T Consensus 268 ~~a~~li~l~~~~~A~~~i~~~Lk~~~-D~~-----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~--p----~L~~tLG 335 (400)
T COG3071 268 AYAERLIRLGDHDEAQEIIEDALKRQW-DPR-----LCRLIPRLRPGDPEPLIKAAEKWLKQHPED--P----LLLSTLG 335 (400)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHhcc-Chh-----HHHHHhhcCCCCchHHHHHHHHHHHhCCCC--h----hHHHHHH
Confidence 566667776666666666555432211 111 333333333345555555555555544333 2 6777889
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy11025 400 RMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE 457 (535)
Q Consensus 400 el~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il~~L~~~D~vaA~~~~e~ 457 (535)
.++.+.+.|.+|-+++|.+...-.+..-+.-.++. ....|+...|..++++
T Consensus 336 ~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~-------~~~~g~~~~A~~~r~e 386 (400)
T COG3071 336 RLALKNKLWGKASEALEAALKLRPSASDYAELADA-------LDQLGEPEEAEQVRRE 386 (400)
T ss_pred HHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHH-------HHHcCChHHHHHHHHH
Confidence 99999999999999999776666555555555544 3456888888888875
No 279
>KOG1070|consensus
Probab=23.59 E-value=8.5e+02 Score=31.05 Aligned_cols=111 Identities=15% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHhcCC
Q psy11025 369 DAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQ-ESEHLLAIGRLAVALVLVQLARGD 447 (535)
Q Consensus 369 ~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~-a~e~~~~a~rl~la~il~~L~~~D 447 (535)
+.--+.|++||.+.. |-..+.+...+|++.+.|.+|.++|+...+.|- ....+...+.. .|.+.+
T Consensus 1514 esl~kVFeRAcqycd-------~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~f-------Ll~~ne 1579 (1710)
T KOG1070|consen 1514 ESLKKVFERACQYCD-------AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADF-------LLRQNE 1579 (1710)
T ss_pred HHHHHHHHHHHHhcc-------hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHH-------HhcccH
Q ss_pred HHHHHHHHHHhhhccCCCCccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy11025 448 TVAAEKAFKEWGNCCEAPERCESGSSSFSFSLGKAGYHQESEHLLAIGRLAVALVLVQLARGDTVAAEKAFKE 520 (535)
Q Consensus 448 ~vaA~~~~e~~~~~~~~~~f~~sre~~~l~~L~l~ay~~~~~~~~~~~~l~l~a~lc~L~~gD~V~A~~a~~~ 520 (535)
..+|..++.+ ...+.-.-++-..+.+. ..+-...||.-.++-.|+.
T Consensus 1580 ~~aa~~lL~r-----------------------AL~~lPk~eHv~~Iskf----AqLEFk~GDaeRGRtlfEg 1625 (1710)
T KOG1070|consen 1580 AEAARELLKR-----------------------ALKSLPKQEHVEFISKF----AQLEFKYGDAERGRTLFEG 1625 (1710)
T ss_pred HHHHHHHHHH-----------------------HHhhcchhhhHHHHHHH----HHHHhhcCCchhhHHHHHH
No 280
>KOG4340|consensus
Probab=23.44 E-value=5.3e+02 Score=27.31 Aligned_cols=58 Identities=14% Similarity=0.072 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q psy11025 395 ISRAARMCVRVKEFDKAADLIRQEIGYHQESEH-LLAIGRLAVALVLVQLARGDTVAAEKAFKEWG 459 (535)
Q Consensus 395 l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~-~~~a~rl~la~il~~L~~~D~vaA~~~~e~~~ 459 (535)
+...+-|.-+.++|+.|++-|..+.+. .++ ..-++- ..+||..+++...|-+...++.
T Consensus 147 ~in~gCllykegqyEaAvqkFqaAlqv---sGyqpllAYn----iALaHy~~~qyasALk~iSEIi 205 (459)
T KOG4340|consen 147 QINLGCLLYKEGQYEAAVQKFQAALQV---SGYQPLLAYN----LALAHYSSRQYASALKHISEII 205 (459)
T ss_pred hccchheeeccccHHHHHHHHHHHHhh---cCCCchhHHH----HHHHHHhhhhHHHHHHHHHHHH
Confidence 334444555678999998888765432 222 122221 2378888899888877666644
No 281
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=23.10 E-value=2.2e+02 Score=23.21 Aligned_cols=19 Identities=16% Similarity=0.135 Sum_probs=12.8
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q psy11025 405 VKEFDKAADLIRQEIGYHQ 423 (535)
Q Consensus 405 ~~~y~~Aie~ye~~~~~~~ 423 (535)
.|+|++|..+|....+.|.
T Consensus 19 ~g~y~eA~~lY~~ale~~~ 37 (75)
T cd02684 19 RGDAAAALSLYCSALQYFV 37 (75)
T ss_pred hccHHHHHHHHHHHHHHHH
Confidence 4677777777777666554
No 282
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=23.02 E-value=2.3e+02 Score=25.99 Aligned_cols=31 Identities=13% Similarity=0.220 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Q psy11025 353 STVLEKGAKSLEELKSDAALTLYSRAADVAH 383 (535)
Q Consensus 353 A~~l~~AAk~~ek~~~~eAie~y~kAaely~ 383 (535)
-+.+..|-.+++..+..++.+.+.+|.+++.
T Consensus 32 l~~l~~A~~aie~~~i~~k~~~i~ka~~Ii~ 62 (132)
T COG1516 32 LKFLKRAKEAIEQEDIEEKNESIDKAIDIIT 62 (132)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 3444444444444555555555555555544
No 283
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=22.77 E-value=5.3e+02 Score=22.66 Aligned_cols=90 Identities=10% Similarity=0.218 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Q psy11025 317 KPDAALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELKSDAALTLYSRAADVAHGEDNYKQAAEYIS 396 (535)
Q Consensus 317 K~D~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~ 396 (535)
.++.-...|++++........++.... ..+ .-......-..+|-+.++.+.++++..-...|. ..
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~---~~~-~~~~~~~~li~ly~~~~~~~ll~~l~~~~~~yd-----------~~ 73 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALK---LNS-ENPALQTKLIELYAKYDPQKEIERLDNKSNHYD-----------IE 73 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHc---cCc-cchhHHHHHHHHHHHHCHHHHHHHHHhccccCC-----------HH
Confidence 455777778776666666555554322 111 122345555556656667777777764222222 23
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHH
Q psy11025 397 RAARMCVRVKEFDKAADLIRQEIGY 421 (535)
Q Consensus 397 kaAel~e~~~~y~~Aie~ye~~~~~ 421 (535)
++++++.+.+.+++++-+|.+.+..
T Consensus 74 ~~~~~c~~~~l~~~~~~l~~k~~~~ 98 (140)
T smart00299 74 KVGKLCEKAKLYEEAVELYKKDGNF 98 (140)
T ss_pred HHHHHHHHcCcHHHHHHHHHhhcCH
Confidence 5666666666677777766665433
No 284
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=22.53 E-value=2.4e+02 Score=23.13 Aligned_cols=20 Identities=10% Similarity=0.265 Sum_probs=15.6
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q psy11025 405 VKEFDKAADLIRQEIGYHQE 424 (535)
Q Consensus 405 ~~~y~~Aie~ye~~~~~~~a 424 (535)
.++|++|..+|....+.|+.
T Consensus 19 ~~~y~eA~~~Y~~~i~~~~~ 38 (75)
T cd02677 19 EGDYEAAFEFYRAGVDLLLK 38 (75)
T ss_pred HhhHHHHHHHHHHHHHHHHH
Confidence 47888888888888777754
No 285
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=22.44 E-value=3.8e+02 Score=20.93 Aligned_cols=18 Identities=22% Similarity=0.549 Sum_probs=9.7
Q ss_pred hhhHHHHHHHHHHHHHHH
Q psy11025 405 VKEFDKAADLIRQEIGYH 422 (535)
Q Consensus 405 ~~~y~~Aie~ye~~~~~~ 422 (535)
.|+|++|+++|.+..+.+
T Consensus 18 ~g~~~~A~~~Y~~ai~~l 35 (69)
T PF04212_consen 18 AGNYEEALELYKEAIEYL 35 (69)
T ss_dssp TTSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 455555555555555444
No 286
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=21.89 E-value=4.6e+02 Score=28.90 Aligned_cols=72 Identities=18% Similarity=0.196 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHHH------HhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy11025 367 KSDAALTLYSRAADV------AHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQEIGYHQESEHLLAIGRLAVALVL 440 (535)
Q Consensus 367 ~~~eAie~y~kAael------y~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~~~~~~a~e~~~~a~rl~la~il 440 (535)
+.+-|.+||+++-++ |...|.. +-+.+++++.+..+++.-|...+--.++.-.-.+.+.+++++..|++.
T Consensus 362 ~~~lAe~c~~k~~d~~~L~lLy~~~g~~----~~L~kl~~~a~~~~~~n~af~~~~~lgd~~~cv~lL~~~~~~~~A~~~ 437 (443)
T PF04053_consen 362 NIELAEECYQKAKDFSGLLLLYSSTGDR----EKLSKLAKIAEERGDINIAFQAALLLGDVEECVDLLIETGRLPEAALF 437 (443)
T ss_dssp BHHHHHHHHHHCT-HHHHHHHHHHCT-H----HHHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHHHTT-HHHHHHH
T ss_pred CHHHHHHHHHhhcCccccHHHHHHhCCH----HHHHHHHHHHHHccCHHHHHHHHHHcCCHHHHHHHHHHcCCchHHHHH
Confidence 455566666555543 4444432 455566666665566666555554444444444555666666555554
Q ss_pred HH
Q psy11025 441 VQ 442 (535)
Q Consensus 441 ~~ 442 (535)
++
T Consensus 438 A~ 439 (443)
T PF04053_consen 438 AR 439 (443)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 287
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=21.14 E-value=4.6e+02 Score=29.23 Aligned_cols=90 Identities=14% Similarity=0.066 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Q psy11025 318 PDAALTLYSRAADVAHGEDNYKQAAEYISRNREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGEDNYKQAAEYIS 396 (535)
Q Consensus 318 ~D~AA~lYekAA~~~eAa~af~kAA~~y~~~~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~egr~~~Aa~~l~ 396 (535)
|..|...|. ++.+++|-+.+......+-+++. ..+-++.++-+.+ .++|++.+++|..++-...- ...
T Consensus 310 YG~A~~~~~-~~~~d~A~~~l~~L~~~~P~N~~----~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~------l~~ 378 (484)
T COG4783 310 YGRALQTYL-AGQYDEALKLLQPLIAAQPDNPY----YLELAGDILLEANKAKEAIERLKKALALDPNSPL------LQL 378 (484)
T ss_pred HHHHHHHHH-hcccchHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccH------HHH
Confidence 445555443 35566666666653322223333 1222334444433 66666666666666544321 222
Q ss_pred HHHHHHHHhhhHHHHHHHHHHH
Q psy11025 397 RAARMCVRVKEFDKAADLIRQE 418 (535)
Q Consensus 397 kaAel~e~~~~y~~Aie~ye~~ 418 (535)
..|+.+.+.+++.+|+.++.+.
T Consensus 379 ~~a~all~~g~~~eai~~L~~~ 400 (484)
T COG4783 379 NLAQALLKGGKPQEAIRILNRY 400 (484)
T ss_pred HHHHHHHhcCChHHHHHHHHHH
Confidence 3444444445555555444443
No 288
>KOG1464|consensus
Probab=20.42 E-value=1.8e+02 Score=30.32 Aligned_cols=55 Identities=11% Similarity=0.243 Sum_probs=32.4
Q ss_pred HHHhCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy11025 362 SLEELKSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAADLIRQE 418 (535)
Q Consensus 362 ~~ek~~~~eAie~y~kAaely~~egr~~~Aa~~l~kaAel~e~~~~y~~Aie~ye~~ 418 (535)
.+++..|++|+..|++-.++-.+.| .=+-+.+++..+|.-+.++|++-++.|.+.
T Consensus 37 ~l~e~~p~~Al~sF~kVlelEgEKg--eWGFKALKQmiKI~f~l~~~~eMm~~Y~ql 91 (440)
T KOG1464|consen 37 GLKEDEPKEALSSFQKVLELEGEKG--EWGFKALKQMIKINFRLGNYKEMMERYKQL 91 (440)
T ss_pred cccccCHHHHHHHHHHHHhcccccc--hhHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 3344456667766666666654443 344556666666666666666666666554
No 289
>KOG1938|consensus
Probab=20.28 E-value=1.3e+02 Score=35.97 Aligned_cols=54 Identities=15% Similarity=0.004 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHH--h--CHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcCC
Q psy11025 333 HGEDNYKQAAEYIS--R--NREAASTVLEKGAKSLEELK-SDAALTLYSRAADVAHGED 386 (535)
Q Consensus 333 eAa~af~kAA~~y~--~--~~~~AA~~l~~AAk~~ek~~-~~eAie~y~kAaely~~eg 386 (535)
..+=...+|+.|+. + .++..+.+.+=|+..|...+ |..|+.+|.+|+..|..-+
T Consensus 292 ~~allleqaal~f~~tkp~m~~ktffHpVLal~r~s~anqp~ha~R~y~~ai~v~~~~~ 350 (960)
T KOG1938|consen 292 LSALLLEQAALCFGSTKPPMPRKTFFHPVLALIRFSSANQPKHALRCYRQAIPVLKKPT 350 (960)
T ss_pred hhHHHHHHHHHHhhcCCCCccchhhcceeehhhhcccCCChhHHHHHHHHHhhhcCCCC
Confidence 44455566666665 3 34555666666666666655 7888888888888876654
No 290
>PRK02733 photosystem I reaction center subunit IX; Provisional
Probab=20.23 E-value=71 Score=23.48 Aligned_cols=16 Identities=44% Similarity=0.627 Sum_probs=9.7
Q ss_pred HHHHHhhhhhccCCCcH
Q psy11025 42 EQKIAEIIERDFFPDLE 58 (535)
Q Consensus 42 ~~~L~~II~RDfFPdL~ 58 (535)
+.++--.|.| ||||+.
T Consensus 22 tag~lIEiNR-ffPD~L 37 (42)
T PRK02733 22 TAGILIEFNR-FFPDLL 37 (42)
T ss_pred HHHHHHHHHH-hCchHh
Confidence 3444444555 999985
No 291
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=20.22 E-value=1.8e+02 Score=31.69 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=21.5
Q ss_pred cCCHH--HHHHHHH-HHhc--hHHHHHHHHHHHHHHH
Q psy11025 315 ELKPD--AALTLYS-RAAD--VAHGEDNYKQAAEYIS 346 (535)
Q Consensus 315 k~K~D--~AA~lYe-kAA~--~~eAa~af~kAA~~y~ 346 (535)
.|-+| ..|..++ +|.. -..|+++|.+|+.+|.
T Consensus 94 nW~~EW~~~a~~~q~rA~~~~~~~A~~~ylrAa~~Y~ 130 (411)
T PF06500_consen 94 NWIYEWSKQAMRWQKRAQEAEGESAAEAYLRAANYYR 130 (411)
T ss_dssp -HHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHH
Confidence 38888 4444444 4543 3489999999999984
Done!