RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11025
         (535 letters)



>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 290

 Score = 28.8 bits (63), Expect = 1.4
 Identities = 10/47 (21%), Positives = 18/47 (38%)

Query: 367 KSDAALTLYSRAADVAHGEDNYKQAAEYISRAARMCVRVKEFDKAAD 413
           K + A  L  +AA +         A +   +AA    +    D+A +
Sbjct: 32  KFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGN 78


>d3cnxa1 d.17.4.17 (A:5-157) Uncharacterized protein SAV4671
           {Streptomyces avermitilis [TaxId: 33903]}
          Length = 153

 Score = 27.2 bits (59), Expect = 3.7
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 55  PDLEKLHAQND-FLDAMELNDVQKLRELYAKYSNSTPYVDRCESSPATFETPEHFTSLEE 113
            D+E++   N  F +AME  D + L  L+   ++     +  + + A   +  H      
Sbjct: 4   TDVEQVGLANTAFYEAMERGDFETLSSLWLTPADLGVDEEYHDPADAGVVSCVHPGWPVL 63

Query: 114 AGSADHEASVRS 125
           +G  +   S   
Sbjct: 64  SGRGEVLRSYAL 75


>d1gkza1 a.29.5.1 (A:38-185) Branched-chain alpha-ketoacid
           dehydrogenase kinase (BCK) {Rat (Rattus norvegicus)
           [TaxId: 10116]}
          Length = 148

 Score = 27.0 bits (60), Expect = 3.9
 Identities = 2/33 (6%), Positives = 8/33 (24%), Gaps = 3/33 (9%)

Query: 139 YQSLNEFLS---THTSEDNQSFEDIIEHAKKKH 168
            ++  +           D   +  ++      H
Sbjct: 63  IRAFQKLTDFPPIKDQADEAQYCQLVRQLLDDH 95


>d1i1ga2 d.58.4.2 (A:62-141) LprA {Archaeon Pyrococcus furiosus
          [TaxId: 2261]}
          Length = 80

 Score = 25.6 bits (56), Expect = 4.6
 Identities = 9/64 (14%), Positives = 21/64 (32%)

Query: 35 YVSPRDAEQKIAEIIERDFFPDLEKLHAQNDFLDAMELNDVQKLRELYAKYSNSTPYVDR 94
             P    +   ++ E DF  +L      +  +  +   D + L E+ +        V +
Sbjct: 10 DTKPEKLFEVAEKLKEYDFVKELYLSSGDHMIMAVIWAKDGEDLAEIISNKIGKIEGVTK 69

Query: 95 CESS 98
             +
Sbjct: 70 VCPA 73


>d2joqa1 d.58.54.2 (A:4-89) Hypothetical protein HP0495
           {Helicobacter pylori [TaxId: 210]}
          Length = 86

 Score = 24.8 bits (54), Expect = 9.3
 Identities = 6/42 (14%), Positives = 15/42 (35%), Gaps = 3/42 (7%)

Query: 131 SKKSTSGKYQSLNEFLSTHTSEDNQSFEDIIEHAKKKHRIKY 172
              S + K+ S N      ++E      +I +   +  ++  
Sbjct: 46  KNTSKNAKFYSFN-VSMEVSNES--ERNEIFQKISQLDKVVQ 84


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.127    0.357 

Gapped
Lambda     K      H
   0.267   0.0461    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,891,532
Number of extensions: 86855
Number of successful extensions: 269
Number of sequences better than 10.0: 1
Number of HSP's gapped: 269
Number of HSP's successfully gapped: 10
Length of query: 535
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 445
Effective length of database: 1,171,896
Effective search space: 521493720
Effective search space used: 521493720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.6 bits)