BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy11026
         (257 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4GOP|C Chain C, Structure And Conformational Change Of A Replication
           Protein A Heterotrimer Bound To Ssdna
 pdb|4GOP|Z Chain Z, Structure And Conformational Change Of A Replication
           Protein A Heterotrimer Bound To Ssdna
 pdb|4GNX|C Chain C, Structure Of
 pdb|4GNX|Z Chain Z, Structure Of
          Length = 444

 Score = 27.7 bits (60), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 42  IMIIRFELPYNIWC--EGCNNHIGMGVRYNAEKKKVGMYYSTPVYQFRMKCHLCDS 95
           ++ I+ E  Y   C  EGCN  + +    N   +K    Y+TP Y++ +  ++ D+
Sbjct: 298 VVYIKQENLYYTACASEGCNKKVNLDHENNWRCEKCDRSYATPEYRYILSTNVADA 353


>pdb|3S3J|A Chain A, Transglutaminase 2 In Complex With A Novel Inhibitor
 pdb|3S3P|A Chain A, Transglutaminase 2 In Complex With A Novel Inhibitor
 pdb|3S3S|A Chain A, Transglutaminase 2 In Complex With A Novel Inhibitor
          Length = 694

 Score = 27.3 bits (59), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)

Query: 133 TKEVSRKLFDDPM--YKLEHGTNDMSSSKSKASHLNKLLDRQES 174
           TK V R   +D    YK   G+++   + ++A+HLNKL +++E+
Sbjct: 435 TKSVGRDEREDITHTYKYPEGSSEEREAFTRANHLNKLAEKEET 478


>pdb|1KV3|A Chain A, Human Tissue Transglutaminase In Gdp Bound Form
 pdb|1KV3|B Chain B, Human Tissue Transglutaminase In Gdp Bound Form
 pdb|1KV3|C Chain C, Human Tissue Transglutaminase In Gdp Bound Form
 pdb|1KV3|D Chain D, Human Tissue Transglutaminase In Gdp Bound Form
 pdb|1KV3|E Chain E, Human Tissue Transglutaminase In Gdp Bound Form
 pdb|1KV3|F Chain F, Human Tissue Transglutaminase In Gdp Bound Form
 pdb|2Q3Z|A Chain A, Transglutaminase 2 Undergoes Large Conformational Change
           Upon Activation
          Length = 687

 Score = 27.3 bits (59), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)

Query: 133 TKEVSRKLFDDPM--YKLEHGTNDMSSSKSKASHLNKLLDRQES 174
           TK V R   +D    YK   G+++   + ++A+HLNKL +++E+
Sbjct: 428 TKSVGRDEREDITHTYKYPEGSSEEREAFTRANHLNKLAEKEET 471


>pdb|3LY6|A Chain A, Crystal Structure Of Human Transglutaminase 2 Complex With
           Adenosine 5' Triphosphate
 pdb|3LY6|B Chain B, Crystal Structure Of Human Transglutaminase 2 Complex With
           Adenosine 5' Triphosphate
 pdb|3LY6|C Chain C, Crystal Structure Of Human Transglutaminase 2 Complex With
           Adenosine 5' Triphosphate
          Length = 697

 Score = 27.3 bits (59), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)

Query: 133 TKEVSRKLFDDPM--YKLEHGTNDMSSSKSKASHLNKLLDRQES 174
           TK V R   +D    YK   G+++   + ++A+HLNKL +++E+
Sbjct: 428 TKSVGRDEREDITHTYKYPEGSSEEREAFTRANHLNKLAEKEET 471


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.135    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,547,578
Number of Sequences: 62578
Number of extensions: 287819
Number of successful extensions: 506
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 501
Number of HSP's gapped (non-prelim): 7
length of query: 257
length of database: 14,973,337
effective HSP length: 97
effective length of query: 160
effective length of database: 8,903,271
effective search space: 1424523360
effective search space used: 1424523360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)