BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11027
(252 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P54362|AP3D_DROME AP-3 complex subunit delta OS=Drosophila melanogaster GN=g PE=1
SV=4
Length = 1034
Score = 250 bits (638), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 115/135 (85%), Positives = 128/135 (94%)
Query: 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLM 60
MLTTNMIRKDLN+QNQYDAG+ALS L+CF S DL+RDLANDIM L++STKPYLR KAVLM
Sbjct: 111 MLTTNMIRKDLNSQNQYDAGVALSGLSCFISPDLSRDLANDIMTLMSSTKPYLRMKAVLM 170
Query: 61 MYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM 120
MYKVFL++P+ALRPAFP+LKEKLEDPD GVQSAAVNV+CELARKNPKNYL LAP+FFKLM
Sbjct: 171 MYKVFLRYPEALRPAFPKLKEKLEDPDPGVQSAAVNVICELARKNPKNYLPLAPIFFKLM 230
Query: 121 TTSSNNWMLIKIIKL 135
TTS+NNWMLIKIIKL
Sbjct: 231 TTSTNNWMLIKIIKL 245
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 185 LYAVLYAAAWICGEFREHLDSPRATLEAMTRRGLSLLPGHIQAVYVQNMLKILARI 240
+Y VLYAAAWI GEF L+ TL + R LLPGHIQ VYVQN++K+ AR+
Sbjct: 477 MYEVLYAAAWIVGEFAGELEDAEKTLNILLRP--RLLPGHIQGVYVQNVIKLFARL 530
>sp|O14617|AP3D1_HUMAN AP-3 complex subunit delta-1 OS=Homo sapiens GN=AP3D1 PE=1 SV=1
Length = 1153
Score = 236 bits (601), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 106/135 (78%), Positives = 126/135 (93%)
Query: 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLM 60
MLTTN IRKDL++ +QYD G+AL+ L+CF + DLARDLANDIM L++ TKPY+RKKAVL+
Sbjct: 110 MLTTNQIRKDLSSPSQYDTGVALTGLSCFVTPDLARDLANDIMTLMSHTKPYIRKKAVLI 169
Query: 61 MYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM 120
MYKVFLK+P++LRPAFPRLKEKLEDPD GVQSAAVNV+CELAR+NPKNYLSLAP+FFKLM
Sbjct: 170 MYKVFLKYPESLRPAFPRLKEKLEDPDPGVQSAAVNVICELARRNPKNYLSLAPLFFKLM 229
Query: 121 TTSSNNWMLIKIIKL 135
T+S+NNW+LIKIIKL
Sbjct: 230 TSSTNNWVLIKIIKL 244
Score = 87.8 bits (216), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/63 (63%), Positives = 46/63 (73%)
Query: 188 VLYAAAWICGEFREHLDSPRATLEAMTRRGLSLLPGHIQAVYVQNMLKILARILDSAESR 247
VLYAAAWICGEF EHL P TLEAM R ++ LPGHIQAVYVQN++K+ A IL E
Sbjct: 481 VLYAAAWICGEFSEHLQEPHHTLEAMLRPRVTTLPGHIQAVYVQNVVKLYASILQQKEQA 540
Query: 248 DDA 250
+A
Sbjct: 541 GEA 543
>sp|O54774|AP3D1_MOUSE AP-3 complex subunit delta-1 OS=Mus musculus GN=Ap3d1 PE=1 SV=1
Length = 1199
Score = 236 bits (601), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 106/135 (78%), Positives = 126/135 (93%)
Query: 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLM 60
MLTTN IRKDL++ +QYD G+AL+ L+CF + DLARDLANDIM L++ TKPY+RKKAVL+
Sbjct: 110 MLTTNQIRKDLSSPSQYDTGVALTGLSCFVTPDLARDLANDIMTLMSHTKPYIRKKAVLI 169
Query: 61 MYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM 120
MYKVFLK+P++LRPAFPRLKEKLEDPD GVQSAAVNV+CELAR+NPKNYLSLAP+FFKLM
Sbjct: 170 MYKVFLKYPESLRPAFPRLKEKLEDPDPGVQSAAVNVICELARRNPKNYLSLAPLFFKLM 229
Query: 121 TTSSNNWMLIKIIKL 135
T+S+NNW+LIKIIKL
Sbjct: 230 TSSTNNWVLIKIIKL 244
Score = 88.6 bits (218), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/62 (64%), Positives = 46/62 (74%)
Query: 188 VLYAAAWICGEFREHLDSPRATLEAMTRRGLSLLPGHIQAVYVQNMLKILARILDSAESR 247
VLYAAAWICGEF EHL P+ TLEAM R ++ LPGHIQAVYVQN++K+ A IL E
Sbjct: 481 VLYAAAWICGEFSEHLQGPQQTLEAMLRPKVTTLPGHIQAVYVQNVVKLYASILQQKEQA 540
Query: 248 DD 249
D
Sbjct: 541 AD 542
>sp|Q865S1|AP3D1_BOVIN AP-3 complex subunit delta-1 OS=Bos taurus GN=AP3D1 PE=1 SV=2
Length = 1207
Score = 236 bits (601), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 106/135 (78%), Positives = 126/135 (93%)
Query: 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLM 60
MLTTN IRKDL++ +QYD G+AL+ L+CF + DLARDLANDIM L++ TKPY+RKKAVL+
Sbjct: 110 MLTTNQIRKDLSSPSQYDTGVALTGLSCFVTPDLARDLANDIMTLMSHTKPYIRKKAVLI 169
Query: 61 MYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM 120
MYKVFLK+P++LRPAFPRLKEKLEDPD GVQSAAVNV+CELAR+NPKNYLSLAP+FFKLM
Sbjct: 170 MYKVFLKYPESLRPAFPRLKEKLEDPDPGVQSAAVNVICELARRNPKNYLSLAPLFFKLM 229
Query: 121 TTSSNNWMLIKIIKL 135
T+S+NNW+LIKIIKL
Sbjct: 230 TSSTNNWVLIKIIKL 244
Score = 88.2 bits (217), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/62 (64%), Positives = 46/62 (74%)
Query: 188 VLYAAAWICGEFREHLDSPRATLEAMTRRGLSLLPGHIQAVYVQNMLKILARILDSAESR 247
VLYAAAWICGEF EHL P+ TLEAM R ++ LPGHIQAVYVQN++K+ A IL E
Sbjct: 481 VLYAAAWICGEFSEHLQEPQQTLEAMLRPKVTTLPGHIQAVYVQNVVKLYAAILQQKEQA 540
Query: 248 DD 249
D
Sbjct: 541 AD 542
>sp|Q54WN0|AP3D_DICDI AP-3 complex subunit delta OS=Dictyostelium discoideum GN=ap3d1
PE=3 SV=1
Length = 1143
Score = 170 bits (430), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 77/136 (56%), Positives = 112/136 (82%), Gaps = 1/136 (0%)
Query: 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLM 60
+L T+ IRKD + NQ +A LAL+ L+ +TDLAR+LANDI+ LL++ K ++ K+A+ +
Sbjct: 97 VLATHQIRKDFLSSNQSEAYLALNCLSNICTTDLARELANDILTLLSTQKTHILKRAITV 156
Query: 61 MYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM 120
+YK+FL++P++LRPAFP+L+EKL+DP+ V S +VNV+CELAR+NPKNYL LAPV F+++
Sbjct: 157 LYKIFLRYPESLRPAFPKLREKLDDPEPSVVSCSVNVICELARRNPKNYLPLAPVLFRIL 216
Query: 121 TTSSNN-WMLIKIIKL 135
T ++NN WMLIKI+KL
Sbjct: 217 TNTTNNYWMLIKIVKL 232
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 35/52 (67%)
Query: 188 VLYAAAWICGEFREHLDSPRATLEAMTRRGLSLLPGHIQAVYVQNMLKILAR 239
VLYAAAWI GEF +++ P LEA + + +LP HIQ+VY+ N LK+ +
Sbjct: 460 VLYAAAWIVGEFSGYVNRPIDALEAFLQPRVCVLPSHIQSVYMLNSLKVFSH 511
>sp|Q9UTL8|AP3D_SCHPO AP-3 complex subunit delta OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=apl5 PE=3 SV=2
Length = 825
Score = 154 bits (389), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 69/135 (51%), Positives = 104/135 (77%)
Query: 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLM 60
MLTTN+++KDL + + LA+ L+ F++ LARDL D+++LL + PY+RK+ +L+
Sbjct: 99 MLTTNLLKKDLMSSKVPEITLAIDGLSHFSTLGLARDLYRDVLILLNHSVPYVRKRTILL 158
Query: 61 MYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM 120
+Y++ L++P+A+ P+L+E+L+DPD+ V +AAV+V+CELAR+ PKNYL AP F L+
Sbjct: 159 LYRLCLQYPEAISACIPKLRERLDDPDTSVVNAAVSVICELARRAPKNYLEFAPDLFHLL 218
Query: 121 TTSSNNWMLIKIIKL 135
TTSSNNWMLIK+IKL
Sbjct: 219 TTSSNNWMLIKLIKL 233
>sp|Q08951|AP3D_YEAST AP-3 complex subunit delta OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=APL5 PE=1 SV=1
Length = 932
Score = 140 bits (354), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 69/174 (39%), Positives = 112/174 (64%), Gaps = 13/174 (7%)
Query: 1 MLTTNMIRKDLNAQNQYDA---GLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKA 57
ML TN+++KDL D G+ALS L+ + LARD+A+D+ +L ST+PY+RKKA
Sbjct: 122 MLATNLLKKDLKYDGNNDVVKVGIALSGLSTIITPSLARDIADDLFTMLNSTRPYIRKKA 181
Query: 58 VLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFF 117
+ ++KVFL++P+ALR F + KL+D D V SAAV+V+CEL++KNP+ ++ L+P+ +
Sbjct: 182 ITALFKVFLQYPEALRDNFDKFVSKLDDDDISVVSAAVSVICELSKKNPQPFIQLSPLLY 241
Query: 118 KLMTTSSNNWMLIKIIKLRLQGVFAVNVVCELARKNPKNYLSLAPVFFKLMTTS 171
+++ T NNW++I+++KL L++ PK L P +LM ++
Sbjct: 242 EILVTIDNNWIIIRLLKL----------FTNLSQVEPKLRAKLLPKILELMEST 285
>sp|Q755A1|AP3D_ASHGO AP-3 complex subunit delta OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=APL5 PE=3 SV=1
Length = 899
Score = 136 bits (342), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 111/175 (63%), Gaps = 13/175 (7%)
Query: 1 MLTTNMIRKDLN---AQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKA 57
ML TN++RKDL + G+ALS L+ + +LARD+ D+ ++L STKPY+RKKA
Sbjct: 120 MLATNLLRKDLKYSLSNETVRMGVALSGLSAMVTPELARDICEDLFLMLHSTKPYIRKKA 179
Query: 58 VLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFF 117
V ++KVFL++P+ LR F + ++LED D V SA V+V+CEL++ NP+ ++ L+P+ +
Sbjct: 180 VTALFKVFLQYPEGLRDNFEKFVDRLEDDDLSVVSATVSVICELSKHNPQPFIQLSPILY 239
Query: 118 KLMTTSSNNWMLIKIIKLRLQGVFAVNVVCELARKNPKNYLSLAPVFFKLMTTSS 172
+++ NNW++I+++KL LA+ PK + + P +LM +++
Sbjct: 240 QMLIKVDNNWVIIRLLKL----------FTNLAQIEPKLRVKILPNVLELMDSTT 284
>sp|Q9C744|AP3D_ARATH AP-3 complex subunit delta OS=Arabidopsis thaliana GN=DELTA-ADR
PE=1 SV=1
Length = 869
Score = 132 bits (333), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 94/135 (69%)
Query: 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLM 60
+L TN +RKDLN+ N+Y+ LAL L+ + DLARDL ++ LL S+K +++KKA+ +
Sbjct: 110 LLITNQVRKDLNSANEYEVSLALECLSRIGTHDLARDLTPEVFTLLGSSKSFVKKKAIGV 169
Query: 61 MYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM 120
+ +VF K+ DA++ F RL E LE D + SA V V CELA K+P++ L LAP F+K++
Sbjct: 170 VLRVFEKYHDAVKVCFKRLVENLETSDPQILSAVVGVFCELATKDPQSCLPLAPEFYKVL 229
Query: 121 TTSSNNWMLIKIIKL 135
S NNW+LIK++K+
Sbjct: 230 VDSRNNWVLIKVLKI 244
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 183 LVLYAVLYAAAWICGEFREHLDSPRATLEAMTRRGLSLLPGHIQAVYVQNMLKILARILD 242
L L+ +L AAAW+ GE+ E +P T+EA+ + LLP I+A+Y+ + K+L L
Sbjct: 464 LFLHPILSAAAWVSGEYVEFSKNPYETVEALLQPRTDLLPPSIKAIYIHSAFKVLVFCLG 523
Query: 243 S 243
S
Sbjct: 524 S 524
>sp|Q5R5M2|AP1G1_PONAB AP-1 complex subunit gamma-1 OS=Pongo abelii GN=AP1G1 PE=2 SV=1
Length = 822
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLM 60
+L TN I+ DLN Q+ GLAL L C S+++ RDLA ++ LL ++ YLRKKA L
Sbjct: 101 LLMTNCIKNDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALC 160
Query: 61 MYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK---NYLSLAPVFF 117
V K P+ + P K L + + GV +V ++ E+ ++P ++ L P
Sbjct: 161 AVHVIRKVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMPAHFRKLVPQLV 220
Query: 118 KLM 120
+++
Sbjct: 221 RIL 223
>sp|O43747|AP1G1_HUMAN AP-1 complex subunit gamma-1 OS=Homo sapiens GN=AP1G1 PE=1 SV=5
Length = 822
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLM 60
+L TN I+ DLN Q+ GLAL L C S+++ RDLA ++ LL ++ YLRKKA L
Sbjct: 101 LLMTNCIKNDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALC 160
Query: 61 MYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK---NYLSLAPVFF 117
V K P+ + P K L + + GV +V ++ E+ ++P ++ L P
Sbjct: 161 AVHVIRKVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLV 220
Query: 118 KLM 120
+++
Sbjct: 221 RIL 223
>sp|P22892|AP1G1_MOUSE AP-1 complex subunit gamma-1 OS=Mus musculus GN=Ap1g1 PE=1 SV=3
Length = 822
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLM 60
+L TN I+ DLN Q+ GLAL L C S+++ RDLA ++ LL ++ YLRKKA L
Sbjct: 101 LLMTNCIKNDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALC 160
Query: 61 MYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK---NYLSLAPVFF 117
V K P+ + P K L + + GV +V ++ E+ ++P ++ L P
Sbjct: 161 AVHVIRKVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLV 220
Query: 118 KLM 120
+++
Sbjct: 221 RIL 223
>sp|O88512|AP1G2_MOUSE AP-1 complex subunit gamma-like 2 OS=Mus musculus GN=Ap1g2 PE=2
SV=2
Length = 791
Score = 70.1 bits (170), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 3/125 (2%)
Query: 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLM 60
+L TN I+ DL+ NQ GLAL L+ S ++ RDLA ++ LL PY+RKKA+L
Sbjct: 102 LLITNSIKNDLSQGNQPVQGLALCTLSTMGSAEMCRDLAPEVEKLLLQPSPYVRKKAILT 161
Query: 61 MYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNP---KNYLSLAPVFF 117
+ K P+ P + L + G+Q V ++ EL +NP +++ + P
Sbjct: 162 AVHMIRKDPELSGIFLPPCTKLLRERHHGIQLGTVTLITELCERNPAALRHFRKVVPQLV 221
Query: 118 KLMTT 122
+++ T
Sbjct: 222 QILRT 226
>sp|Q99128|AP1G1_USTMA AP-1 complex subunit gamma-1 OS=Ustilago maydis (strain 521 / FGSC
9021) GN=APL4 PE=3 SV=2
Length = 853
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 58/106 (54%)
Query: 2 LTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMM 61
L TN ++ D+ N Y GLAL A S +++RDL N+I L+ S+ Y+R+KA +
Sbjct: 104 LVTNGLKNDMEHSNMYVCGLALCTFANIASEEMSRDLCNEIEKLMGSSNTYIRRKAAICA 163
Query: 62 YKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK 107
++ K PD + R ++ L D + GV AV + E+ R++ +
Sbjct: 164 MRIVRKVPDLIDHFVDRTQQLLSDKNHGVLLCAVTLAIEICRQDDE 209
>sp|Q9ZUI6|AP1G2_ARATH AP-1 complex subunit gamma-2 OS=Arabidopsis thaliana GN=At1g60070
PE=2 SV=2
Length = 862
Score = 67.8 bits (164), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 57/107 (53%), Gaps = 8/107 (7%)
Query: 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLM 60
ML TN +++DLN NQY GLAL AL S ++ARDLA ++ LL P +RKKA L
Sbjct: 104 MLVTNSLKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKAALC 163
Query: 61 MYKVFLKFPDA----LRPAFPRLKEKLEDPDSGVQSAAVNVVCELAR 103
++ K PD + P LKEK GV V++ E+ +
Sbjct: 164 AIRIIRKVPDLSENFINPGAALLKEK----HHGVLITGVHLCTEICK 206
>sp|Q8I8U2|AP1G_DICDI AP-1 complex subunit gamma OS=Dictyostelium discoideum GN=ap1g1
PE=1 SV=1
Length = 895
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 70/132 (53%), Gaps = 3/132 (2%)
Query: 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLM 60
+L TN IR D+ NQ+ G++L A ST +ARD++ +I +++ + PY+RKKA L
Sbjct: 99 LLATNCIRGDIMNSNQFIVGVSLCAFGNICSTAMARDISPEIEKVISHSNPYIRKKAALC 158
Query: 61 MYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNV---VCELARKNPKNYLSLAPVFF 117
+V K PD P++K L + + V A+ + +CE+ ++ + P
Sbjct: 159 AIRVLRKVPDLTENYIPKIKALLSERNHAVILTALTLIIEICEMDSTQIIHFKKMVPQLV 218
Query: 118 KLMTTSSNNWML 129
+++ + +++ L
Sbjct: 219 RILKSLTSSGYL 230
>sp|Q84K16|AP1G1_ARATH AP-1 complex subunit gamma-1 OS=Arabidopsis thaliana GN=GAMMA-ADR
PE=1 SV=1
Length = 876
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 53/105 (50%)
Query: 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLM 60
ML TN +++DLN NQY GLAL AL S ++ARDLA ++ L+ P +RKKA L
Sbjct: 104 MLVTNSLKQDLNHSNQYVVGLALCALGNICSAEMARDLAPEVERLIQFRDPNIRKKAALC 163
Query: 61 MYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 105
++ K PD L++ GV V + EL N
Sbjct: 164 STRIIRKVPDLAENFVNAAASLLKEKHHGVLITGVQLCYELCTIN 208
>sp|O75843|AP1G2_HUMAN AP-1 complex subunit gamma-like 2 OS=Homo sapiens GN=AP1G2 PE=1
SV=1
Length = 785
Score = 62.0 bits (149), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 3/125 (2%)
Query: 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLM 60
+L TN I+ DL+ Q GLAL L+ S ++ RDLA ++ LL PY+RKKA+L
Sbjct: 102 LLITNSIKNDLSQGIQPVQGLALCTLSTMGSAEMCRDLAPEVEKLLLQPSPYVRKKAILT 161
Query: 61 MYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNP---KNYLSLAPVFF 117
+ K P+ P + L + G+ + ++ EL ++P +++ + P
Sbjct: 162 AVHMIRKVPELSSVFLPPCAQLLHERHHGILLGTITLITELCERSPAALRHFRKVVPQLV 221
Query: 118 KLMTT 122
++ T
Sbjct: 222 HILRT 226
>sp|Q9UU81|AP1G1_SCHPO AP-1 complex subunit gamma-1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=apl4 PE=3 SV=1
Length = 865
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 54/105 (51%)
Query: 2 LTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMM 61
L TN ++ DL +++++ GLALSA +LARDL+NDI L ++ Y+ KKAVL
Sbjct: 130 LLTNSLQNDLKSRDKFIVGLALSAFGNVAGPELARDLSNDIAELCSNHHNYISKKAVLCA 189
Query: 62 YKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNP 106
+V K PD + E L GV AA+ + NP
Sbjct: 190 LRVIQKEPDLESLYIEKTDELLHSKSHGVLMAALAFAISACKINP 234
>sp|Q8LPL6|AP2A1_ARATH AP-2 complex subunit alpha-1 OS=Arabidopsis thaliana GN=ALPHA-ADR
PE=1 SV=1
Length = 1012
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 67/129 (51%), Gaps = 4/129 (3%)
Query: 2 LTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLL--TSTKPYLRKKAVL 59
L N +R D+ +N+ LAL+ + D A LA D+ LL +S +P +RKKA L
Sbjct: 105 LAINTVRNDIIGRNETFQCLALTLVGNIGGRDFAESLAPDVQKLLISSSCRPLVRKKAAL 164
Query: 60 MMYKVFLKFPDALRPAF--PRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFF 117
+ ++F K PDA+ R+ + L++ D GV +++ +++ L N + Y S P
Sbjct: 165 CLLRLFRKNPDAVNVDGWADRMAQLLDERDLGVLTSSTSLLVALVSNNHEAYSSCLPKCV 224
Query: 118 KLMTTSSNN 126
K++ + N
Sbjct: 225 KILERLARN 233
>sp|Q8LPK4|AP2A2_ARATH AP-2 complex subunit alpha-2 OS=Arabidopsis thaliana GN=ALPHAC-AD
PE=1 SV=1
Length = 1013
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 67/129 (51%), Gaps = 4/129 (3%)
Query: 2 LTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLL--TSTKPYLRKKAVL 59
L N +R D+ +N+ LAL+ + D A LA D+ LL +S +P +RKKA L
Sbjct: 105 LAINTVRNDIIGRNETFQCLALTLVGNIGGRDFAESLAPDVQKLLISSSCRPLVRKKAAL 164
Query: 60 MMYKVFLKFPDALRPAF--PRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFF 117
+ ++F K PDA+ R+ + L++ D GV +++ +++ L N + Y S P
Sbjct: 165 CLLRLFRKNPDAVNVDGWADRMAQLLDERDLGVLTSSTSLLVALVSNNHEAYSSCLPKCV 224
Query: 118 KLMTTSSNN 126
K++ + N
Sbjct: 225 KILERLARN 233
>sp|Q7QG73|AP2A_ANOGA AP-2 complex subunit alpha OS=Anopheles gambiae GN=alpha-Adaptin
PE=3 SV=4
Length = 934
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 7/130 (5%)
Query: 2 LTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTS--TKPYLRKKAVL 59
L I+ DL ++N LAL +A S D+A +N+I LL S T +++ A L
Sbjct: 110 LIIQSIKNDLQSRNPIHVNLALQCIANIGSQDMAEAFSNEIPKLLVSGDTMDVVKQSAAL 169
Query: 60 MMYKVFLKFPDALRPA--FPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY---LSLAP 114
+ ++F PD + R+ L D GV +AA +++ L +KNP+ Y +SLA
Sbjct: 170 CLLRLFRTCPDIIPGGEWTSRIIHLLNDQHMGVVTAATSLIDALVKKNPEEYKGCVSLAV 229
Query: 115 VFFKLMTTSS 124
+ T+S
Sbjct: 230 SRLSRIVTAS 239
>sp|P91926|AP2A_DROME AP-2 complex subunit alpha OS=Drosophila melanogaster
GN=alpha-Adaptin PE=1 SV=1
Length = 940
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 4/107 (3%)
Query: 7 IRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTS--TKPYLRKKAVLMMYKV 64
I+ DL ++N LAL +A S D+A +N+I LL S T +++ A L + ++
Sbjct: 115 IKNDLQSRNPVHVNLALQCIANIGSRDMAESFSNEIPKLLVSGDTMDVVKQSAALCLLRL 174
Query: 65 FLKFPDALRPA--FPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY 109
F PD + R+ L D GV +AA +++ L ++NP Y
Sbjct: 175 FRSSPDIIPGGEWTSRIIHLLNDQHMGVVTAATSLIDALVKRNPDEY 221
>sp|Q9NFU6|COPB_TRYBB Coatomer subunit beta OS=Trypanosoma brucei brucei PE=3 SV=1
Length = 982
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 79/174 (45%), Gaps = 13/174 (7%)
Query: 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLM 60
+L + +R+DL N+Y GLAL + +L L + ++ LT Y+R+ AVL
Sbjct: 98 ILICSFLREDLLHPNEYIRGLALRFMCKVKERELVEPLVSSVVQNLTHRVTYVRRNAVLA 157
Query: 61 MYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM 120
++++F +FP+ L P L EK ++ V SA+ N L +P + F +
Sbjct: 158 VHRIFKRFPELL-PDAAELVEKFISEENDV-SASRNAFEMLVECSPDRVVK----FLAEL 211
Query: 121 TTSSNNWMLIKIIKLRLQGVFAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNN 174
S N L +++ + V+ + R NP + V F ++ SNN
Sbjct: 212 RESKNLESLGATLQMSI-----VDFAGHMIRANPYDKGRYVTVLFSIL--QSNN 258
>sp|Q80V94|AP4E1_MOUSE AP-4 complex subunit epsilon-1 OS=Mus musculus GN=Ap4e1 PE=2 SV=3
Length = 1122
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%)
Query: 5 NMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKV 64
N + KDL + N + +AL+ ++ ++ + I L +K +R+KAVL +YK
Sbjct: 135 NTVVKDLQSTNLVEVCMALTVVSQIFPREMIPAVLPLIEDKLQHSKEIIRRKAVLALYKF 194
Query: 65 FLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM 120
+L P+ ++ + ++ L D D GV +A++++ + ++N Y L F ++
Sbjct: 195 YLIAPNQVQHIHTKFRKALCDRDVGVMAASLHIYLRMIKENASGYKDLTESFVTIL 250
>sp|Q29N38|AP2A_DROPS AP-2 complex subunit alpha OS=Drosophila pseudoobscura
pseudoobscura GN=alpha-Adaptin PE=3 SV=1
Length = 939
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 7 IRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTS--TKPYLRKKAVLMMYKV 64
I+ DL ++N LAL +A S D+A +N+I LL S T +++ A L + ++
Sbjct: 115 IKNDLQSRNPVHVNLALQCIANIGSRDMAESFSNEIPKLLVSGDTMDVVKQSAALCLLRL 174
Query: 65 FLKFPDALRPA--FPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY 109
F PD + R+ L D GV +AA +++ L + NP Y
Sbjct: 175 FRSSPDIIPGGEWTSRIIHLLNDQHMGVVTAATSLIDALVKCNPDEY 221
>sp|Q9UPM8|AP4E1_HUMAN AP-4 complex subunit epsilon-1 OS=Homo sapiens GN=AP4E1 PE=1 SV=2
Length = 1137
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 59/116 (50%)
Query: 5 NMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKV 64
N + KDL + N + +AL+ ++ ++ + I L +K +R+KAVL +YK
Sbjct: 136 NTVVKDLQSTNLVEVCMALTVVSQIFPCEMIPAVLPLIEDKLQHSKEIVRRKAVLALYKF 195
Query: 65 FLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM 120
L P+ ++ + ++ L D D GV +A++++ + ++N Y L F ++
Sbjct: 196 HLIAPNQVQHIHIKFRKALCDRDVGVMAASLHIYLRMIKENSSGYKDLTGSFVTIL 251
>sp|Q9C0W7|AP2A_SCHPO AP-2 complex subunit alpha OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=apl3 PE=3 SV=1
Length = 878
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Query: 2 LTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLL--TSTKPYLRKKAVL 59
L N I+KDL + + LAL +A +L + DI LL S + +R+K+ L
Sbjct: 106 LVINSIKKDLLSHDSLQNSLALHTIANIGGRELCETVYYDIYKLLMSASNENIVRQKSAL 165
Query: 60 MMYKVFLKFPDALRPA-FPRLKEKLEDPDSGVQSAAVNVVCELARKNPK 107
+ ++ KFPD + P F + L D D V A N V + + PK
Sbjct: 166 ALLHIYRKFPDLINPEWFEPIVMILGDDDLNVSLAVSNFVNLIVIREPK 214
>sp|Q54VE0|AP4E_DICDI AP-4 complex subunit epsilon OS=Dictyostelium discoideum GN=ap4e1
PE=3 SV=1
Length = 1080
Score = 45.4 bits (106), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 53/108 (49%), Gaps = 3/108 (2%)
Query: 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLM 60
++ N I K LN+ N + AL+A+ D ++ LL KP +RKK+V +
Sbjct: 129 IMAVNSILKGLNSSNYLEVCSALTAMCKLIDNDTIPAFLQKVLQLLNHQKPIVRKKSVTV 188
Query: 61 MYKVFLKFPDAL---RPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 105
+++ + D+ +L++ L D D V SA++ + +++ K+
Sbjct: 189 LHRFYRLVGDSFLDDDQIIDKLRQSLCDRDPSVMSASICIFLDISEKH 236
>sp|Q86KI1|AP2A2_DICDI AP-2 complex subunit alpha-2 OS=Dictyostelium discoideum GN=ap2a1-1
PE=3 SV=1
Length = 989
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 63/123 (51%), Gaps = 4/123 (3%)
Query: 2 LTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLL--TSTKPYLRKKAVL 59
L N ++DL A++ Y LAL+A+ ++A L+ I LL ++ P ++K+ L
Sbjct: 116 LIINSFKEDLLARSDYFQSLALAAICNIGGKEVAEFLSPLIQKLLIANTSSPMVKKRCAL 175
Query: 60 MMYKVFLKFPDALRPA--FPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFF 117
+ ++ K + P RL L++PD GV ++ ++++ ELA +NP + P
Sbjct: 176 AILRMNRKHIGLVTPDSWVERLVSVLDEPDFGVLTSLMSLLIELASENPIGWEPAIPKVI 235
Query: 118 KLM 120
L+
Sbjct: 236 HLL 238
>sp|P17426|AP2A1_MOUSE AP-2 complex subunit alpha-1 OS=Mus musculus GN=Ap2a1 PE=1 SV=1
Length = 977
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 109/241 (45%), Gaps = 45/241 (18%)
Query: 2 LTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTS--TKPYLRKKAVL 59
L N I+ DL ++N LAL +A S ++ A DI +L + + +++ A L
Sbjct: 111 LINNAIKNDLASRNPTFMCLALHCIANVGSREMGEAFAADIPRILVAGDSMDSVKQSAAL 170
Query: 60 MMYKVFLKFPD--ALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY---LSLAP 114
+ +++ PD + R+ L D GV +AAV+++ L +KNP ++ +SLA
Sbjct: 171 CLLRLYKASPDLVPMGEWTARVVHLLNDQHMGVVTAAVSLITCLCKKNPDDFKTCISLAV 230
Query: 115 VFFKLMTTSSNN-------------WMLIKIIKL----------RLQG--VFAVNVVCEL 149
+ +S++ W+ +K+++L ++G V + V
Sbjct: 231 SRLSRIVSSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDAAVKGRLVECLETVLNK 290
Query: 150 ARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLVLY-----AVLYAAAWICGEFREHLD 204
A++ PK+ K+ +++ N +L + I L+++ +L A G+F +H +
Sbjct: 291 AQEPPKSK--------KVQHSNAKNAILFETISLIIHYDSEPNLLVRACNQLGQFLQHRE 342
Query: 205 S 205
+
Sbjct: 343 T 343
>sp|O95782|AP2A1_HUMAN AP-2 complex subunit alpha-1 OS=Homo sapiens GN=AP2A1 PE=1 SV=3
Length = 977
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 108/241 (44%), Gaps = 45/241 (18%)
Query: 2 LTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPY--LRKKAVL 59
L N I+ DL ++N LAL +A S ++ A DI +L + +++ A L
Sbjct: 111 LINNAIKNDLASRNPTFMCLALHCIANVGSREMGEAFAADIPRILVAGDSMDSVKQSAAL 170
Query: 60 MMYKVFLKFPD--ALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY---LSLAP 114
+ +++ PD + R+ L D GV +AAV+++ L +KNP ++ +SLA
Sbjct: 171 CLLRLYKASPDLVPMGEWTARVVHLLNDQHMGVVTAAVSLITCLCKKNPDDFKTCVSLAV 230
Query: 115 VFFKLMTTSSNN-------------WMLIKIIKL----------RLQG--VFAVNVVCEL 149
+ +S++ W+ +K+++L ++G V + V
Sbjct: 231 SRLSRIVSSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDAAVKGRLVECLETVLNK 290
Query: 150 ARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLVLY-----AVLYAAAWICGEFREHLD 204
A++ PK+ K+ +++ N +L + I L+++ +L A G+F +H +
Sbjct: 291 AQEPPKSK--------KVQHSNAKNAILFETISLIIHYDSEPNLLVRACNQLGQFLQHRE 342
Query: 205 S 205
+
Sbjct: 343 T 343
>sp|Q8L7A9|AP4E_ARATH AP-4 complex subunit epsilon OS=Arabidopsis thaliana GN=At1g31730
PE=1 SV=1
Length = 938
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 58/120 (48%)
Query: 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLM 60
+L N I+KDL + N AL+A+ + + + ++ LL K +RKKA++
Sbjct: 121 ILIVNTIQKDLRSDNYLVVCAALNAICRLINEETIPAVLPQVVELLNHQKEAVRKKAIMA 180
Query: 61 MYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM 120
+++ K P ++ +++L D D GV A + + +L ++ +Y L F ++
Sbjct: 181 LHRFHRKSPSSVSHLVSNFRKRLCDNDPGVMGATLCPLFDLISEDVNSYKDLVSSFVSIL 240
>sp|Q12028|AP1G1_YEAST AP-1 complex subunit gamma-1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=APL4 PE=1 SV=1
Length = 832
Score = 39.7 bits (91), Expect = 0.023, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 8 RKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTK-PYLRKKAVLMMYKVFL 66
DL+ N+Y LAL++L +S +LARDL D+ ++ +++ P+L KKA+ K+
Sbjct: 108 NNDLHHPNKYAVSLALTSLGFLSSPELARDLYPDVENIIKNSRDPFLLKKALQCAAKLIF 167
Query: 67 K 67
K
Sbjct: 168 K 168
>sp|Q556J8|AP3B_DICDI AP-3 complex subunit beta OS=Dictyostelium discoideum GN=ap3b-1
PE=3 SV=1
Length = 1108
Score = 37.4 bits (85), Expect = 0.092, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 44/101 (43%)
Query: 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLM 60
+L+ N I+K LN Q+Q AL ++ D+ + I + T P++RK A
Sbjct: 93 LLSINTIQKSLNDQSQVIRASALRVMSSIRVIDIIEVIILAIEKSVKDTSPFVRKAAAFA 152
Query: 61 MYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCEL 101
+ KV D P L+ L D + V AA+ EL
Sbjct: 153 IAKVHKLDCDKQEPLIDLLEILLNDTSTMVLGAAIVAFNEL 193
>sp|P41810|COPB_YEAST Coatomer subunit beta OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SEC26 PE=1 SV=2
Length = 973
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 77/181 (42%), Gaps = 17/181 (9%)
Query: 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLM 60
+L N I+ DL N+Y G L L +L + ++ L Y+RK A+L
Sbjct: 101 ILVCNAIQHDLQHPNEYIRGNTLRFLTKLREAELLEQMVPSVLACLEYRHAYVRKYAILA 160
Query: 61 MYKVFLKFPDALRPAFPRLKEK--LEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFK 118
++ +F K + L P + + + D + A + EL R+N +YL
Sbjct: 161 VFSIF-KVSEHLLPDAKEIINSFIVAETDPICKRNAFIGLAELDRENALHYL-------- 211
Query: 119 LMTTSSNNWMLIKIIKLRLQGVFAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLI 178
NN I+ + LQ VF V + + A + P + +L++T++++ ++
Sbjct: 212 -----ENNIADIENLDPLLQAVF-VQFIRQDANRTPALKAQYIELLMELLSTTTSDEVIF 265
Query: 179 K 179
+
Sbjct: 266 E 266
>sp|O43079|AP1B1_SCHPO AP-1 complex subunit beta-1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=apl2 PE=1 SV=1
Length = 683
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 12/159 (7%)
Query: 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKA--- 57
+L N KD N LA+ + C + LA+ + L PY+RK A
Sbjct: 89 ILAVNTFVKDSEEYNPTLRALAIRTMGCIRVNKIIGYLADPLRKALKDEHPYVRKAAAVC 148
Query: 58 VLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNP-KNYLSLAPVF 116
V+ MY + ++ A +L+ + DP+ V + AV + E+ ++P K Y ++
Sbjct: 149 VVKMYDLDREYC-ASNGFIEQLQALVSDPNPVVVANAVRSLAEIHDQDPEKGYFNVVYTM 207
Query: 117 F-KLMT--TSSNNWMLIKII----KLRLQGVFAVNVVCE 148
+LM + N W I I+ + R + VCE
Sbjct: 208 TDRLMVALSECNEWGRITILNSLARFRTSDIKEAEYVCE 246
>sp|Q66HV4|COPB_DANRE Coatomer subunit beta OS=Danio rerio GN=copb1 PE=2 SV=1
Length = 953
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLM 60
+L + RKDL N++ G L L ++L L I L Y+R+ AVL
Sbjct: 99 ILVCDAYRKDLQHPNEFIRGSTLRFLCKLKESELLEPLMPAIRACLEHRHSYVRRNAVLA 158
Query: 61 MYKVFLKFPDALRPAFPRL 79
+Y ++ F + L P P L
Sbjct: 159 IYTIYRNF-EHLIPDAPEL 176
>sp|D2SW95|COPB_PIG Coatomer subunit beta OS=Sus scrofa GN=COPB1 PE=2 SV=1
Length = 953
Score = 35.4 bits (80), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLM 60
+L + RKDL N++ G L L +L L I L Y+R+ AVL
Sbjct: 99 ILVCDAYRKDLQHPNEFIRGSTLRFLCKLKEAELLEPLMPAIRACLEHRHSYVRRNAVLA 158
Query: 61 MYKVFLKFPDALRPAFPRL 79
+Y ++ F + L P P L
Sbjct: 159 IYTIYRNF-EHLIPDAPEL 176
>sp|Q5ZIA5|COPB_CHICK Coatomer subunit beta OS=Gallus gallus GN=COPB1 PE=2 SV=1
Length = 953
Score = 35.4 bits (80), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLM 60
+L + RKDL N++ G L L +L L I L Y+R+ AVL
Sbjct: 99 ILVCDAYRKDLQHPNEFIRGSTLRFLCKLKEAELLEPLMPAIRACLEHRHSYVRRNAVLA 158
Query: 61 MYKVFLKFPDALRPAFPRL 79
+Y ++ F + L P P L
Sbjct: 159 IYTIYRNF-EHLIPDAPEL 176
>sp|A0JN39|COPB_BOVIN Coatomer subunit beta OS=Bos taurus GN=COPB1 PE=1 SV=1
Length = 953
Score = 35.4 bits (80), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLM 60
+L + RKDL N++ G L L +L L I L Y+R+ AVL
Sbjct: 99 ILVCDAYRKDLQHPNEFIRGSTLRFLCKLKEAELLEPLMPAIRACLEHRHSYVRRNAVLA 158
Query: 61 MYKVFLKFPDALRPAFPRL 79
+Y ++ F + L P P L
Sbjct: 159 IYTIYRNF-EHLIPDAPEL 176
>sp|P53618|COPB_HUMAN Coatomer subunit beta OS=Homo sapiens GN=COPB1 PE=1 SV=3
Length = 953
Score = 35.4 bits (80), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLM 60
+L + RKDL N++ G L L +L L I L Y+R+ AVL
Sbjct: 99 ILVCDAYRKDLQHPNEFIRGSTLRFLCKLKEAELLEPLMPAIRACLEHRHSYVRRNAVLA 158
Query: 61 MYKVFLKFPDALRPAFPRL 79
+Y ++ F + L P P L
Sbjct: 159 IYTIYRNF-EHLIPDAPEL 176
>sp|Q5R922|COPB_PONAB Coatomer subunit beta OS=Pongo abelii GN=COPB1 PE=2 SV=1
Length = 953
Score = 35.4 bits (80), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLM 60
+L + RKDL N++ G L L +L L I L Y+R+ AVL
Sbjct: 99 ILVCDAYRKDLQHPNEFIRGSTLRFLCKLKEAELLEPLMPAIRACLEHRHSYVRRNAVLA 158
Query: 61 MYKVFLKFPDALRPAFPRL 79
+Y ++ F + L P P L
Sbjct: 159 IYTIYRNF-EHLIPDAPEL 176
>sp|Q9JIF7|COPB_MOUSE Coatomer subunit beta OS=Mus musculus GN=Copb1 PE=1 SV=1
Length = 953
Score = 35.0 bits (79), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLM 60
+L + RKDL N++ G L L +L L I L Y+R+ AVL
Sbjct: 99 ILVCDAYRKDLQHPNEFIRGSTLRFLCKLKEAELLEPLMPAIRACLEHRHSYVRRNAVLA 158
Query: 61 MYKVFLKFPDALRPAFPRL 79
+Y ++ F + L P P L
Sbjct: 159 IYTIYRNF-EHLIPDAPEL 176
>sp|P23514|COPB_RAT Coatomer subunit beta OS=Rattus norvegicus GN=Copb1 PE=1 SV=1
Length = 953
Score = 35.0 bits (79), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLM 60
+L + RKDL N++ G L L +L L I L Y+R+ AVL
Sbjct: 99 ILVCDAYRKDLQHPNEFIRGSTLRFLCKLKEAELLEPLMPAIRACLEHRHSYVRRNAVLA 158
Query: 61 MYKVFLKFPDALRPAFPRL 79
+Y ++ F + L P P L
Sbjct: 159 IYTIYRNFEN-LIPDAPEL 176
>sp|Q54R84|AP4B_DICDI AP-4 complex subunit beta OS=Dictyostelium discoideum GN=ap4b1 PE=3
SV=1
Length = 838
Score = 35.0 bits (79), Expect = 0.57, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Query: 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLM 60
+L N +R+D +N GLAL +L S + +I LT Y+RK A+L
Sbjct: 98 LLVVNTLRRDCIDRNPIIRGLALRSLCSLDSKNTLEYATIEINRSLTDFSGYVRKTALLG 157
Query: 61 MYKVFLKFPDA--LRPAFPRLKEKLEDPDSGVQSAAVNVVCEL 101
+ K++ +A L P++ + + D D V AV+ + E+
Sbjct: 158 LAKLYHLSKEAFDLDIIIPKIFDMIMDQDPQVIVNAVSTLNEI 200
>sp|Q9SV20|COPB2_ARATH Coatomer subunit beta-2 OS=Arabidopsis thaliana GN=At4g31490 PE=2
SV=2
Length = 948
Score = 34.7 bits (78), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 7/115 (6%)
Query: 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLM 60
+L +R +L N+Y G+ L L T++ L ++ L P++R+ A+L
Sbjct: 95 ILICQNLRNNLQHPNEYIRGVTLRFLCRMKETEIVEPLTPSVLQNLEHRHPFVRRNAILA 154
Query: 61 MYKVF-LKFPDALRPAFPRLKEKL----EDPDSGVQSAAVNVVCELARKNPKNYL 110
+ ++ L D L P + EK+ +DP + + + C A + NYL
Sbjct: 155 IMSIYKLPHGDQLFVDAPEMIEKVLSTEQDPSAKRNAFLMLFTC--AEERAVNYL 207
>sp|Q23924|COPB_DICDI Coatomer subunit beta OS=Dictyostelium discoideum GN=copb PE=2 SV=2
Length = 912
Score = 34.7 bits (78), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLM 60
+L N + DLN N++ G L L ++ L + L + Y R+ AVL
Sbjct: 103 ILVCNSLLNDLNHPNEFVRGSTLRFLCKLREAEVLEPLVPSVRSNLENRHAYCRRNAVLA 162
Query: 61 MYKVFLKFPDALRPAFPRL 79
+Y ++ F D L P P L
Sbjct: 163 IYNIYSHF-DYLIPDAPEL 180
>sp|Q9SV21|COPB1_ARATH Coatomer subunit beta-1 OS=Arabidopsis thaliana GN=At4g31480 PE=1
SV=2
Length = 948
Score = 34.7 bits (78), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 9/116 (7%)
Query: 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLM 60
+L +R +L N+Y G+ L L T++ L ++ L P++R+ A+L
Sbjct: 95 ILICQNLRNNLQHPNEYIRGVTLRFLCRMKETEIVEPLTPSVLQNLEHRHPFVRRNAILA 154
Query: 61 MYKVFLKFP--DALRPAFPRLKEKL----EDPDSGVQSAAVNVVCELARKNPKNYL 110
+ ++ K P D L P + EK+ +DP + + + C A + NYL
Sbjct: 155 IMSIY-KLPQGDQLFVDAPEMIEKVLSTEQDPSAKRNAFLMLFTC--AEERAVNYL 207
>sp|Q9U4N3|COPB_TOXGO Coatomer subunit beta OS=Toxoplasma gondii PE=2 SV=2
Length = 1103
Score = 34.3 bits (77), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLM 60
+L N +R DL + N+Y G L L+ + L I+ LT Y+R+ AV+
Sbjct: 97 ILICNALRNDLMSPNEYVRGSTLRLLSKIRQFKVLEPLVEAILQNLTHRHSYVRRNAVMC 156
Query: 61 MYKVFLKFP-DALRPAFPRLKEKL 83
+Y + F DA+ ++++ L
Sbjct: 157 VYSIVKNFGLDAIPATIDQIEQML 180
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,126,849
Number of Sequences: 539616
Number of extensions: 2931835
Number of successful extensions: 9261
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 9137
Number of HSP's gapped (non-prelim): 139
length of query: 252
length of database: 191,569,459
effective HSP length: 115
effective length of query: 137
effective length of database: 129,513,619
effective search space: 17743365803
effective search space used: 17743365803
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)