Query psy11027
Match_columns 252
No_of_seqs 246 out of 968
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 16:16:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11027.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11027hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1059|consensus 100.0 1.5E-55 3.4E-60 420.7 16.5 249 1-250 108-539 (877)
2 KOG1062|consensus 100.0 2.3E-49 5.1E-54 382.2 15.7 239 1-240 106-434 (866)
3 KOG1077|consensus 100.0 5.3E-37 1.2E-41 293.1 18.2 238 2-241 111-454 (938)
4 PF01602 Adaptin_N: Adaptin N 100.0 2.3E-30 5E-35 248.0 20.0 237 1-239 78-388 (526)
5 PTZ00429 beta-adaptin; Provisi 100.0 8.8E-28 1.9E-32 238.8 21.9 237 1-238 104-415 (746)
6 KOG1059|consensus 99.9 8E-24 1.7E-28 203.6 11.6 211 4-220 38-284 (877)
7 KOG1060|consensus 99.8 1.7E-19 3.8E-24 175.2 13.3 204 1-208 107-336 (968)
8 KOG1061|consensus 99.7 5E-17 1.1E-21 158.4 17.4 135 1-135 85-225 (734)
9 COG5096 Vesicle coat complex, 99.7 5E-16 1.1E-20 153.4 11.8 104 1-104 91-196 (757)
10 KOG1058|consensus 99.5 4.4E-13 9.6E-18 130.6 11.9 102 1-102 98-200 (948)
11 PF12717 Cnd1: non-SMC mitotic 98.8 9.1E-08 2E-12 80.4 11.7 108 15-122 1-112 (178)
12 PTZ00429 beta-adaptin; Provisi 98.6 1.6E-06 3.5E-11 87.4 18.1 230 4-238 34-326 (746)
13 PF01602 Adaptin_N: Adaptin N 98.6 1.2E-06 2.5E-11 84.3 16.0 54 185-239 428-484 (526)
14 KOG1078|consensus 98.2 4.8E-05 1E-09 75.6 14.4 133 1-135 99-231 (865)
15 PF13646 HEAT_2: HEAT repeats; 97.7 0.00024 5.2E-09 51.7 8.0 84 5-98 2-87 (88)
16 PF10508 Proteasom_PSMB: Prote 97.5 0.0088 1.9E-07 58.2 18.3 125 9-135 45-183 (503)
17 cd00020 ARM Armadillo/beta-cat 97.4 0.00059 1.3E-08 51.7 7.3 97 6-102 11-119 (120)
18 KOG1062|consensus 97.4 0.00074 1.6E-08 67.6 9.3 90 41-133 74-163 (866)
19 PF04826 Arm_2: Armadillo-like 97.4 0.006 1.3E-07 54.3 13.7 122 13-135 24-157 (254)
20 PF10508 Proteasom_PSMB: Prote 97.4 0.0099 2.1E-07 57.8 16.2 130 5-135 80-225 (503)
21 PRK09687 putative lyase; Provi 97.3 0.002 4.4E-08 58.0 10.0 102 11-122 100-203 (280)
22 cd00020 ARM Armadillo/beta-cat 97.1 0.0017 3.7E-08 49.1 6.7 86 38-123 8-103 (120)
23 PF12755 Vac14_Fab1_bd: Vacuol 97.1 0.0036 7.9E-08 47.6 8.3 77 19-95 8-89 (97)
24 KOG2171|consensus 97.1 0.045 9.8E-07 57.0 18.2 111 12-122 322-442 (1075)
25 PF12717 Cnd1: non-SMC mitotic 97.1 0.028 6.2E-07 47.0 14.1 95 50-155 1-97 (178)
26 PRK13800 putative oxidoreducta 96.9 0.086 1.9E-06 54.8 18.6 113 4-133 623-735 (897)
27 PRK09687 putative lyase; Provi 96.9 0.0094 2E-07 53.7 10.1 97 3-105 24-122 (280)
28 KOG0166|consensus 96.8 0.16 3.4E-06 49.5 18.3 128 7-135 157-302 (514)
29 PF13646 HEAT_2: HEAT repeats; 96.6 0.0098 2.1E-07 43.0 7.0 75 40-126 2-77 (88)
30 COG5096 Vesicle coat complex, 96.4 0.13 2.8E-06 52.2 15.2 118 6-127 22-142 (757)
31 KOG0414|consensus 96.4 0.007 1.5E-07 63.0 6.4 90 12-101 933-1025(1251)
32 PF12348 CLASP_N: CLASP N term 96.3 0.039 8.4E-07 47.4 10.0 101 5-106 56-163 (228)
33 COG5240 SEC21 Vesicle coat com 96.2 0.041 8.9E-07 54.0 10.1 76 1-76 100-176 (898)
34 KOG1020|consensus 96.1 0.051 1.1E-06 58.1 11.1 123 5-128 819-945 (1692)
35 PF12348 CLASP_N: CLASP N term 96.1 0.043 9.2E-07 47.1 9.1 105 4-108 96-211 (228)
36 PF12830 Nipped-B_C: Sister ch 96.1 0.028 6.1E-07 47.6 7.7 116 6-121 12-140 (187)
37 KOG1060|consensus 95.9 0.034 7.3E-07 56.1 8.5 96 7-102 40-136 (968)
38 KOG2023|consensus 95.9 0.15 3.2E-06 50.9 12.5 111 19-130 375-494 (885)
39 PF05918 API5: Apoptosis inhib 95.8 0.022 4.7E-07 56.0 6.4 95 13-107 33-129 (556)
40 PRK13800 putative oxidoreducta 95.7 0.045 9.7E-07 56.9 9.0 110 6-130 779-888 (897)
41 KOG0414|consensus 95.7 0.067 1.5E-06 56.0 9.9 108 13-121 972-1081(1251)
42 PF13513 HEAT_EZ: HEAT-like re 95.6 0.058 1.3E-06 35.9 6.4 49 16-64 1-55 (55)
43 PF10363 DUF2435: Protein of u 95.6 0.095 2.1E-06 39.4 8.2 71 37-107 3-76 (92)
44 PF02985 HEAT: HEAT repeat; I 95.5 0.034 7.3E-07 33.0 4.4 30 38-67 1-30 (31)
45 PF04826 Arm_2: Armadillo-like 95.2 0.25 5.5E-06 43.9 10.8 132 40-179 15-154 (254)
46 KOG2171|consensus 95.2 0.19 4.1E-06 52.6 11.0 120 4-123 391-528 (1075)
47 KOG1078|consensus 94.8 0.33 7.2E-06 49.1 11.2 174 17-208 263-443 (865)
48 PF13513 HEAT_EZ: HEAT-like re 94.7 0.016 3.5E-07 38.6 1.4 50 51-100 1-54 (55)
49 PF05918 API5: Apoptosis inhib 94.7 0.089 1.9E-06 51.7 6.8 83 38-121 24-106 (556)
50 KOG0166|consensus 94.4 2.2 4.7E-05 41.7 15.4 107 16-122 127-248 (514)
51 COG5098 Chromosome condensatio 94.3 0.42 9E-06 48.1 10.4 102 5-106 302-418 (1128)
52 KOG2023|consensus 94.1 0.82 1.8E-05 45.8 12.1 113 6-118 178-306 (885)
53 KOG1824|consensus 94.1 0.15 3.2E-06 52.6 7.1 115 6-121 936-1054(1233)
54 PF08167 RIX1: rRNA processing 93.8 1 2.3E-05 37.2 10.7 113 6-120 29-160 (165)
55 COG1413 FOG: HEAT repeat [Ener 93.6 0.35 7.5E-06 43.9 8.2 77 5-90 77-153 (335)
56 PLN03200 cellulose synthase-in 93.5 3.2 7E-05 46.9 16.5 113 11-123 573-706 (2102)
57 KOG1058|consensus 93.2 0.54 1.2E-05 47.6 9.2 116 5-123 137-255 (948)
58 TIGR02270 conserved hypothetic 92.9 1 2.2E-05 42.8 10.5 89 4-103 88-176 (410)
59 KOG1061|consensus 92.9 2.3 4.9E-05 43.1 13.0 120 6-129 17-138 (734)
60 smart00638 LPD_N Lipoprotein N 92.5 0.47 1E-05 46.6 7.9 92 6-101 450-543 (574)
61 TIGR02270 conserved hypothetic 92.4 0.82 1.8E-05 43.5 9.0 86 5-101 120-205 (410)
62 PLN03200 cellulose synthase-in 91.6 1.8 3.9E-05 48.8 11.5 118 6-123 613-747 (2102)
63 PF02985 HEAT: HEAT repeat; I 91.5 0.37 8.1E-06 28.3 3.7 29 76-104 2-30 (31)
64 PF08713 DNA_alkylation: DNA a 91.5 0.14 3.1E-06 43.3 2.5 70 39-110 122-191 (213)
65 cd06561 AlkD_like A new struct 91.5 2.5 5.4E-05 35.2 10.1 70 41-111 109-178 (197)
66 PF12719 Cnd3: Nuclear condens 90.1 3 6.5E-05 37.6 10.0 60 9-68 34-95 (298)
67 COG5064 SRP1 Karyopherin (impo 90.0 3.5 7.7E-05 38.5 10.2 161 7-179 162-347 (526)
68 COG5098 Chromosome condensatio 90.0 0.96 2.1E-05 45.7 7.0 101 13-113 945-1047(1128)
69 KOG2160|consensus 89.8 5.2 0.00011 37.2 11.2 97 10-106 132-243 (342)
70 KOG0168|consensus 89.3 0.43 9.4E-06 48.8 4.1 79 32-110 546-636 (1051)
71 KOG1077|consensus 88.8 26 0.00056 35.8 15.8 200 22-240 313-552 (938)
72 COG1413 FOG: HEAT repeat [Ener 88.7 2.8 6.1E-05 37.9 8.8 90 4-103 45-135 (335)
73 PF12719 Cnd3: Nuclear condens 88.1 3 6.5E-05 37.6 8.5 69 38-106 28-96 (298)
74 PF05804 KAP: Kinesin-associat 88.1 3.2 6.9E-05 42.3 9.4 119 5-126 293-426 (708)
75 KOG2274|consensus 87.9 9.3 0.0002 39.7 12.4 224 13-242 502-780 (1005)
76 PF08623 TIP120: TATA-binding 87.6 2.5 5.5E-05 35.4 7.1 69 52-121 42-116 (169)
77 PF12765 Cohesin_HEAT: HEAT re 87.2 0.85 1.8E-05 29.1 3.2 38 60-97 2-41 (42)
78 PF11698 V-ATPase_H_C: V-ATPas 87.0 2 4.3E-05 33.9 5.8 55 12-66 54-115 (119)
79 PF11701 UNC45-central: Myosin 86.8 2 4.3E-05 35.3 6.0 124 48-179 16-150 (157)
80 KOG0946|consensus 86.7 3.7 8E-05 42.1 8.7 116 4-121 67-218 (970)
81 KOG4224|consensus 86.7 4.7 0.0001 38.1 8.8 113 9-122 215-344 (550)
82 PF10363 DUF2435: Protein of u 86.6 1.5 3.3E-05 32.8 4.8 67 5-71 6-77 (92)
83 PF12755 Vac14_Fab1_bd: Vacuol 86.6 2.7 5.9E-05 31.8 6.2 68 53-120 2-73 (97)
84 KOG0212|consensus 86.5 6.8 0.00015 38.8 10.1 59 61-119 360-423 (675)
85 PF08713 DNA_alkylation: DNA a 85.8 0.58 1.3E-05 39.6 2.4 71 8-78 126-196 (213)
86 KOG4524|consensus 85.3 4.4 9.5E-05 42.2 8.6 90 32-121 798-899 (1014)
87 PF12830 Nipped-B_C: Sister ch 84.9 11 0.00025 31.6 9.9 77 33-111 4-82 (187)
88 PF07539 DRIM: Down-regulated 83.7 2.9 6.3E-05 33.9 5.5 91 28-121 8-98 (141)
89 PF12460 MMS19_C: RNAPII trans 82.9 6.8 0.00015 37.1 8.5 85 35-119 321-410 (415)
90 cd03569 VHS_Hrs_Vps27p VHS dom 82.9 5.5 0.00012 32.2 6.8 66 3-68 42-116 (142)
91 PF13251 DUF4042: Domain of un 82.8 25 0.00053 29.8 11.0 52 53-104 2-70 (182)
92 cd03568 VHS_STAM VHS domain fa 82.2 8.2 0.00018 31.3 7.6 63 3-65 38-109 (144)
93 PF01347 Vitellogenin_N: Lipop 82.2 0.81 1.8E-05 45.2 2.0 91 7-101 495-587 (618)
94 KOG2160|consensus 82.1 4.7 0.0001 37.5 6.8 96 40-135 127-234 (342)
95 cd03561 VHS VHS domain family; 82.0 11 0.00024 29.8 8.2 67 3-69 38-115 (133)
96 cd07064 AlkD_like_1 A new stru 81.5 23 0.00049 30.3 10.5 88 24-113 87-189 (208)
97 KOG1242|consensus 80.1 67 0.0014 32.0 18.2 106 15-123 191-307 (569)
98 cd03561 VHS VHS domain family; 79.9 14 0.00029 29.3 8.0 79 57-135 20-106 (133)
99 cd06561 AlkD_like A new struct 79.5 2.7 5.8E-05 35.0 4.0 73 8-80 111-184 (197)
100 PF00790 VHS: VHS domain; Int 79.1 4.9 0.00011 32.2 5.3 61 3-63 43-115 (140)
101 PF00790 VHS: VHS domain; Int 79.0 23 0.00051 28.2 9.2 80 56-135 24-112 (140)
102 KOG1240|consensus 78.8 5.9 0.00013 42.4 6.8 65 6-70 660-729 (1431)
103 cd03568 VHS_STAM VHS domain fa 78.8 14 0.00031 29.8 8.0 71 65-135 28-104 (144)
104 PF05804 KAP: Kinesin-associat 77.3 91 0.002 32.0 17.6 79 159-237 576-663 (708)
105 KOG1241|consensus 77.1 72 0.0016 32.9 13.6 93 15-107 341-439 (859)
106 KOG1248|consensus 76.6 14 0.00031 39.3 8.9 90 27-116 817-912 (1176)
107 PF11935 DUF3453: Domain of un 76.3 3.8 8.2E-05 36.0 4.2 59 45-103 1-72 (239)
108 PF04388 Hamartin: Hamartin pr 76.0 18 0.00039 36.7 9.4 81 39-121 72-158 (668)
109 cd03567 VHS_GGA VHS domain fam 76.0 20 0.00043 28.9 8.0 77 59-135 23-110 (139)
110 KOG1824|consensus 76.0 30 0.00065 36.6 10.7 114 6-120 1011-1150(1233)
111 cd03569 VHS_Hrs_Vps27p VHS dom 75.9 21 0.00044 28.8 8.1 75 61-135 28-108 (142)
112 smart00288 VHS Domain present 75.9 20 0.00044 28.4 8.0 77 59-135 22-105 (133)
113 COG5181 HSH155 U2 snRNP splice 74.8 33 0.00071 34.8 10.3 120 2-121 604-740 (975)
114 KOG4535|consensus 74.6 19 0.00041 35.3 8.5 94 11-104 56-180 (728)
115 smart00288 VHS Domain present 73.6 17 0.00037 28.8 7.0 66 3-68 38-113 (133)
116 PF05004 IFRD: Interferon-rela 72.7 76 0.0017 28.9 12.4 119 4-122 88-239 (309)
117 KOG1943|consensus 72.2 16 0.00035 38.7 7.9 91 31-121 335-430 (1133)
118 cd00197 VHS_ENTH_ANTH VHS, ENT 71.5 14 0.0003 28.2 5.8 57 55-111 18-74 (115)
119 KOG1242|consensus 71.4 7.6 0.00016 38.4 5.2 73 17-90 269-349 (569)
120 cd03567 VHS_GGA VHS domain fam 71.1 21 0.00045 28.8 7.0 60 4-63 40-113 (139)
121 PF14500 MMS19_N: Dos2-interac 71.0 76 0.0017 28.2 14.3 63 41-103 3-69 (262)
122 PF03224 V-ATPase_H_N: V-ATPas 70.7 19 0.0004 32.6 7.4 108 13-120 68-200 (312)
123 KOG2213|consensus 70.2 7 0.00015 37.1 4.5 81 39-122 27-107 (460)
124 PF08167 RIX1: rRNA processing 70.2 30 0.00065 28.4 7.9 80 31-110 19-107 (165)
125 COG5240 SEC21 Vesicle coat com 70.1 1.3E+02 0.0028 30.5 14.7 98 31-130 297-394 (898)
126 PF11698 V-ATPase_H_C: V-ATPas 70.0 17 0.00036 28.7 6.0 69 37-105 43-117 (119)
127 PF00514 Arm: Armadillo/beta-c 70.0 9 0.0002 23.6 3.7 24 39-62 14-37 (41)
128 KOG2973|consensus 69.5 56 0.0012 30.2 10.0 63 39-103 5-71 (353)
129 KOG2062|consensus 69.5 20 0.00043 36.8 7.7 24 48-71 566-589 (929)
130 KOG1020|consensus 68.6 19 0.0004 39.7 7.6 77 38-114 817-895 (1692)
131 PF08506 Cse1: Cse1; InterPro 68.4 10 0.00022 35.7 5.2 58 4-61 307-370 (370)
132 PF10274 ParcG: Parkin co-regu 68.3 37 0.0008 28.8 8.1 76 42-118 43-124 (183)
133 PF00514 Arm: Armadillo/beta-c 68.3 12 0.00027 22.9 4.1 27 76-102 14-40 (41)
134 PF10521 DUF2454: Protein of u 68.0 21 0.00045 32.0 7.1 77 27-103 106-203 (282)
135 PF13251 DUF4042: Domain of un 67.8 32 0.00069 29.1 7.7 94 12-105 50-176 (182)
136 PF08389 Xpo1: Exportin 1-like 66.9 21 0.00045 27.7 6.1 49 51-100 2-51 (148)
137 PF14664 RICTOR_N: Rapamycin-i 66.7 22 0.00048 33.4 7.1 99 3-103 71-176 (371)
138 KOG1241|consensus 66.1 27 0.00058 35.9 7.8 99 6-104 368-478 (859)
139 PF13001 Ecm29: Proteasome sta 66.0 18 0.00038 35.4 6.6 98 7-104 324-444 (501)
140 PF12530 DUF3730: Protein of u 66.0 72 0.0016 27.7 9.9 111 11-121 10-131 (234)
141 KOG0211|consensus 65.7 85 0.0018 32.5 11.5 148 36-205 236-388 (759)
142 KOG1991|consensus 64.8 23 0.00049 37.3 7.2 105 14-118 430-550 (1010)
143 KOG2259|consensus 63.3 30 0.00065 35.1 7.5 88 17-106 173-266 (823)
144 COG4912 Predicted DNA alkylati 61.7 49 0.0011 28.9 7.8 90 20-110 88-190 (222)
145 KOG2199|consensus 60.2 24 0.00053 33.5 6.0 78 4-81 47-138 (462)
146 KOG2274|consensus 59.4 1.3E+02 0.0028 31.8 11.3 114 5-122 7-139 (1005)
147 KOG2025|consensus 59.0 41 0.00088 34.5 7.6 51 47-98 136-188 (892)
148 PF09324 DUF1981: Domain of un 58.4 33 0.00072 25.1 5.5 64 35-98 15-83 (86)
149 cd03572 ENTH_epsin_related ENT 57.2 15 0.00032 29.1 3.6 42 31-72 32-73 (122)
150 KOG0915|consensus 57.1 83 0.0018 35.0 9.9 184 30-231 811-1056(1702)
151 KOG2956|consensus 57.1 12 0.00026 36.3 3.5 56 14-69 418-480 (516)
152 PF08568 Kinetochor_Ybp2: Unch 57.0 62 0.0013 32.5 8.8 54 47-102 452-506 (633)
153 KOG2025|consensus 56.5 74 0.0016 32.7 8.9 87 17-103 61-155 (892)
154 PF12765 Cohesin_HEAT: HEAT re 56.5 18 0.00039 22.9 3.2 23 37-59 18-40 (42)
155 KOG2062|consensus 56.5 32 0.00069 35.4 6.4 92 12-107 565-658 (929)
156 KOG1820|consensus 56.1 66 0.0014 33.6 8.8 99 9-107 343-447 (815)
157 PF12074 DUF3554: Domain of un 56.0 1.2E+02 0.0026 27.6 10.0 105 18-122 3-114 (339)
158 KOG1248|consensus 55.3 1.1E+02 0.0025 32.9 10.4 110 12-121 748-879 (1176)
159 KOG1517|consensus 54.9 40 0.00086 36.1 7.0 89 16-104 571-672 (1387)
160 KOG2933|consensus 54.9 90 0.002 28.8 8.6 101 4-104 90-200 (334)
161 KOG4224|consensus 54.7 1.4E+02 0.0031 28.5 10.0 117 7-123 131-263 (550)
162 KOG1949|consensus 54.4 47 0.001 34.1 7.2 110 6-116 178-307 (1005)
163 smart00185 ARM Armadillo/beta- 54.2 27 0.00059 20.6 3.8 27 38-64 13-39 (41)
164 cd00256 VATPase_H VATPase_H, r 53.9 12 0.00027 35.9 3.1 53 13-65 365-424 (429)
165 KOG0213|consensus 53.7 1.8E+02 0.0038 30.5 11.0 32 76-107 885-916 (1172)
166 KOG0212|consensus 53.0 1.1E+02 0.0024 30.7 9.3 105 11-115 176-291 (675)
167 KOG0213|consensus 52.6 45 0.00097 34.5 6.8 102 3-104 477-583 (1172)
168 KOG0168|consensus 52.6 3.1E+02 0.0067 29.0 16.6 103 7-109 172-290 (1051)
169 KOG2973|consensus 52.4 53 0.0011 30.4 6.7 61 5-67 6-72 (353)
170 PF14663 RasGEF_N_2: Rapamycin 51.7 27 0.00058 27.1 4.2 30 76-105 10-39 (115)
171 PF03224 V-ATPase_H_N: V-ATPas 51.7 69 0.0015 28.9 7.6 99 16-122 54-157 (312)
172 KOG2149|consensus 50.9 75 0.0016 30.2 7.6 65 39-103 60-128 (393)
173 KOG2759|consensus 50.0 15 0.00034 35.0 3.0 51 15-65 380-437 (442)
174 KOG1991|consensus 49.9 84 0.0018 33.3 8.4 120 3-122 463-600 (1010)
175 PF11841 DUF3361: Domain of un 49.7 1.5E+02 0.0033 24.6 9.2 91 17-107 32-135 (160)
176 PF14631 FancD2: Fanconi anaem 49.2 35 0.00075 37.8 5.9 89 32-120 430-519 (1426)
177 KOG0392|consensus 48.8 87 0.0019 34.3 8.4 96 9-104 823-926 (1549)
178 KOG1293|consensus 48.4 2.6E+02 0.0056 28.4 11.2 121 14-135 389-527 (678)
179 KOG3723|consensus 48.0 79 0.0017 31.7 7.5 62 61-122 186-247 (851)
180 COG5181 HSH155 U2 snRNP splice 47.2 33 0.00071 34.7 4.9 100 4-103 283-387 (975)
181 KOG4199|consensus 46.6 1.3E+02 0.0028 28.5 8.3 94 18-111 258-367 (461)
182 COG5116 RPN2 26S proteasome re 46.6 96 0.0021 31.3 7.8 42 45-86 629-674 (926)
183 cd03572 ENTH_epsin_related ENT 45.0 27 0.00058 27.6 3.3 48 63-110 27-74 (122)
184 KOG0567|consensus 44.4 1E+02 0.0022 28.0 7.0 90 3-100 188-277 (289)
185 PF12231 Rif1_N: Rap1-interact 44.2 2.7E+02 0.0058 25.9 10.7 120 3-122 40-186 (372)
186 PF08506 Cse1: Cse1; InterPro 43.8 1.2E+02 0.0025 28.5 7.9 117 6-122 214-357 (370)
187 KOG2005|consensus 43.3 3.3E+02 0.0071 28.1 11.0 50 185-239 197-251 (878)
188 PF11919 DUF3437: Domain of un 42.9 59 0.0013 24.2 4.7 57 53-109 5-64 (90)
189 cd08050 TAF6 TATA Binding Prot 42.6 2.8E+02 0.006 25.6 11.1 109 12-120 188-314 (343)
190 PF12074 DUF3554: Domain of un 42.6 51 0.0011 30.1 5.2 50 35-84 202-254 (339)
191 KOG1293|consensus 42.2 78 0.0017 32.0 6.6 92 11-102 428-532 (678)
192 KOG2199|consensus 41.9 1.1E+02 0.0024 29.2 7.3 47 58-104 29-75 (462)
193 KOG1949|consensus 41.7 81 0.0017 32.5 6.6 74 30-103 166-249 (1005)
194 KOG1992|consensus 41.7 2.5E+02 0.0054 29.5 10.1 54 20-73 109-162 (960)
195 PF10274 ParcG: Parkin co-regu 41.2 51 0.0011 28.0 4.6 49 34-82 77-125 (183)
196 COG5218 YCG1 Chromosome conden 40.9 2E+02 0.0043 29.3 9.0 77 32-108 86-168 (885)
197 PF12612 TFCD_C: Tubulin foldi 40.7 2.1E+02 0.0045 23.9 8.4 36 31-66 1-36 (193)
198 KOG1525|consensus 40.4 1.1E+02 0.0024 33.6 7.9 81 31-111 253-337 (1266)
199 KOG1820|consensus 40.1 1.1E+02 0.0023 32.0 7.5 90 32-121 248-346 (815)
200 PF08064 UME: UME (NUC010) dom 40.0 1.6E+02 0.0036 22.2 7.6 72 48-119 26-100 (107)
201 COG5110 RPN1 26S proteasome re 39.7 85 0.0018 31.5 6.3 84 13-98 615-700 (881)
202 KOG0567|consensus 39.2 3E+02 0.0065 25.0 9.4 76 17-102 171-248 (289)
203 COG5064 SRP1 Karyopherin (impo 37.2 67 0.0015 30.3 5.0 96 6-101 331-441 (526)
204 KOG2032|consensus 37.1 3.3E+02 0.0072 26.9 9.8 100 11-110 267-378 (533)
205 PF07539 DRIM: Down-regulated 36.6 72 0.0016 25.7 4.6 43 6-49 21-63 (141)
206 PF05004 IFRD: Interferon-rela 36.2 3.3E+02 0.0073 24.7 9.6 55 51-105 200-262 (309)
207 COG5116 RPN2 26S proteasome re 36.1 1.9E+02 0.0042 29.3 8.1 42 46-91 561-603 (926)
208 cd03565 VHS_Tom1 VHS domain fa 35.0 2E+02 0.0043 23.0 7.0 61 3-63 39-112 (141)
209 PF11099 M11L: Apoptosis regul 34.8 35 0.00075 28.5 2.5 30 76-105 66-96 (167)
210 COG5215 KAP95 Karyopherin (imp 34.8 1.9E+02 0.004 29.3 7.8 86 21-107 350-441 (858)
211 KOG2259|consensus 34.6 1.8E+02 0.0039 29.8 7.7 80 16-97 387-469 (823)
212 COG5656 SXM1 Importin, protein 34.5 1.5E+02 0.0032 30.9 7.2 64 4-68 462-530 (970)
213 KOG0413|consensus 34.3 2.2E+02 0.0048 30.6 8.5 90 25-116 992-1088(1529)
214 KOG1243|consensus 34.0 65 0.0014 32.8 4.7 102 6-107 373-519 (690)
215 PF12333 Ipi1_N: Rix1 complex 33.8 1.2E+02 0.0026 22.8 5.2 43 34-76 8-51 (102)
216 KOG0413|consensus 33.1 30 0.00065 36.7 2.2 78 50-128 944-1022(1529)
217 KOG4653|consensus 32.8 1.7E+02 0.0037 30.8 7.4 66 3-69 848-921 (982)
218 KOG4653|consensus 32.1 1.5E+02 0.0032 31.2 6.8 72 37-108 727-802 (982)
219 KOG2038|consensus 31.2 2E+02 0.0043 30.0 7.5 61 48-108 315-375 (988)
220 KOG2005|consensus 31.2 1.4E+02 0.003 30.6 6.4 78 16-98 622-699 (878)
221 PF14500 MMS19_N: Dos2-interac 31.2 1E+02 0.0022 27.4 5.1 50 21-70 191-241 (262)
222 KOG0211|consensus 31.1 1.9E+02 0.0042 30.0 7.6 86 17-102 575-663 (759)
223 KOG1240|consensus 31.0 3.6E+02 0.0078 29.7 9.6 65 29-93 454-527 (1431)
224 KOG2137|consensus 30.2 4.7E+02 0.01 26.9 9.9 113 6-118 393-515 (700)
225 cd03564 ANTH_AP180_CALM ANTH d 30.1 1.6E+02 0.0034 22.5 5.5 42 66-107 29-70 (117)
226 PF06685 DUF1186: Protein of u 30.1 3.6E+02 0.0077 24.0 8.3 21 50-70 126-146 (249)
227 cd00256 VATPase_H VATPase_H, r 30.0 4.2E+02 0.0091 25.5 9.3 86 9-107 44-134 (429)
228 PF12243 CTK3: CTD kinase subu 29.1 2.5E+02 0.0054 22.7 6.6 62 37-103 8-69 (139)
229 KOG2759|consensus 28.6 1.2E+02 0.0027 29.1 5.3 68 37-104 366-439 (442)
230 cd03565 VHS_Tom1 VHS domain fa 28.3 3.1E+02 0.0067 21.9 7.7 62 74-135 38-109 (141)
231 COG5656 SXM1 Importin, protein 27.9 3E+02 0.0065 28.8 8.1 103 15-117 429-544 (970)
232 COG5215 KAP95 Karyopherin (imp 27.8 2.7E+02 0.0059 28.2 7.7 79 38-116 598-681 (858)
233 KOG4413|consensus 27.8 4.8E+02 0.01 24.7 8.9 120 7-127 87-229 (524)
234 KOG4413|consensus 27.6 4.7E+02 0.01 24.8 8.8 121 12-132 138-277 (524)
235 COG5593 Nucleic-acid-binding p 27.5 1.1E+02 0.0024 30.5 4.9 67 41-107 194-261 (821)
236 KOG1822|consensus 27.1 5.7E+02 0.012 29.6 10.5 108 6-113 880-998 (2067)
237 COG5110 RPN1 26S proteasome re 26.5 5.8E+02 0.012 25.9 9.6 30 76-105 49-78 (881)
238 PF07540 NOC3p: Nucleolar comp 26.4 1.9E+02 0.0042 21.7 5.1 37 31-67 18-55 (95)
239 PF07571 DUF1546: Protein of u 25.6 2.7E+02 0.006 20.4 5.9 54 49-102 18-77 (92)
240 KOG1048|consensus 25.1 4.7E+02 0.01 27.0 9.0 115 13-128 530-671 (717)
241 KOG2549|consensus 25.0 7.1E+02 0.015 24.9 11.4 113 9-121 214-345 (576)
242 COG5657 CSE1 CAS/CSE protein i 24.8 1.7E+02 0.0036 30.9 5.8 61 12-72 96-158 (947)
243 PF12530 DUF3730: Protein of u 24.5 4.6E+02 0.01 22.6 11.4 48 58-105 105-153 (234)
244 PF11701 UNC45-central: Myosin 23.8 1.5E+02 0.0032 24.0 4.5 99 6-104 7-118 (157)
245 KOG2956|consensus 23.4 7.2E+02 0.016 24.5 10.4 94 15-108 302-406 (516)
246 KOG1992|consensus 23.0 9.2E+02 0.02 25.6 13.7 65 4-68 458-529 (960)
247 cd07064 AlkD_like_1 A new stru 22.1 1.1E+02 0.0024 26.1 3.5 66 10-76 123-189 (208)
248 PF11864 DUF3384: Domain of un 21.8 4.5E+02 0.0097 25.3 8.0 54 53-106 6-61 (464)
249 PHA02855 anti-apoptotic membra 21.7 1.1E+02 0.0023 25.7 3.1 28 79-106 82-109 (180)
250 PF06012 DUF908: Domain of Unk 21.0 2.2E+02 0.0047 26.1 5.5 32 74-105 26-57 (329)
251 PF03914 CBF: CBF/Mak21 family 20.3 4.2E+02 0.0092 21.3 6.6 72 36-107 21-99 (164)
252 PF11865 DUF3385: Domain of un 20.1 4.8E+02 0.01 21.2 7.3 27 4-33 16-42 (160)
253 COG5218 YCG1 Chromosome conden 20.0 3.6E+02 0.0078 27.5 6.8 90 7-96 96-192 (885)
No 1
>KOG1059|consensus
Probab=100.00 E-value=1.5e-55 Score=420.70 Aligned_cols=249 Identities=59% Similarity=0.953 Sum_probs=230.1
Q ss_pred CcchHHHHHhcccCCHHHHHHHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHH
Q psy11027 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLK 80 (252)
Q Consensus 1 ~L~~N~i~kDL~s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~ 80 (252)
||+||.++||++|+|.|..|+||.++|++.+|+++|+++++|..+|+|+.||+||||++.++|+|.+|||.++..||+++
T Consensus 108 mL~tn~~rkdl~S~n~ye~giAL~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~ 187 (877)
T KOG1059|consen 108 MLTTNLLRKDLNSSNVYEVGLALSGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLV 187 (877)
T ss_pred HHHHHHHHHHhccCccchhhheecccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCChhHHHHHHHHHHHHHhhCchhhhhhHHHHHHHhhcCCChhHHHHHhhc---------ccc-------------
Q psy11027 81 EKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKL---------RLQ------------- 138 (252)
Q Consensus 81 ~lL~d~d~~V~~~al~ll~ei~~~~p~~~~~l~p~l~~lL~~~~~pwlqikiLkl---------rL~------------- 138 (252)
+.|+|+||||++||++++||+++++|++|..++|.|+++|++++++|+.||++|+ |||
T Consensus 188 EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~s 267 (877)
T KOG1059|consen 188 EKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMES 267 (877)
T ss_pred HhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999998 776
Q ss_pred ------------chhhh--------------------hhhhhhcccCccchhchh-------------------------
Q psy11027 139 ------------GVFAV--------------------NVVCELARKNPKNYLSLA------------------------- 161 (252)
Q Consensus 139 ------------~v~a~--------------------~v~~e~~~~n~~~~l~l~------------------------- 161 (252)
+|+++ .+|+||+|||+| |+||.
T Consensus 268 T~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLK-YlgLlam~KI~ktHp~~Vqa~kdlIlrcL~ 346 (877)
T KOG1059|consen 268 TVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLK-YLGLLAMSKILKTHPKAVQAHKDLILRCLD 346 (877)
T ss_pred hHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHH-HHHHHHHHHHhhhCHHHHHHhHHHHHHHhc
Confidence 23322 299999999999 99997
Q ss_pred ------------------------hHHHHHhc---------------------CCCcchhHHH-----------HH----
Q psy11027 162 ------------------------PVFFKLMT---------------------TSSNNWMLIK-----------II---- 181 (252)
Q Consensus 162 ------------------------~~l~~lL~---------------------~~~nN~~~i~-----------li---- 181 (252)
++++++|. ||.+||.||. |.
T Consensus 347 DkD~SIRlrALdLl~gmVskkNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~ 426 (877)
T KOG1059|consen 347 DKDESIRLRALDLLYGMVSKKNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLEG 426 (877)
T ss_pred cCCchhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccc
Confidence 34455543 8999999998 11
Q ss_pred ---------------------H---------H--------------hhHHHHHHHHHHHHHHHhhccChhHHHHHHHhhh
Q psy11027 182 ---------------------K---------L--------------VLYAVLYAAAWICGEFREHLDSPRATLEAMTRRG 217 (252)
Q Consensus 182 ---------------------k---------l--------------~~~e~l~~~~~iv~~~~~~l~~~~~~~~~~l~~~ 217 (252)
| + ..+|+|||++||+|||.+|++++.++++.++++|
T Consensus 427 ~~~G~~I~eQi~Dv~iRV~~iR~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ven~~~~leamlrpr 506 (877)
T KOG1059|consen 427 TRHGSLIAEQIIDVAIRVPSIRPFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFVENPNDTLEAMLRPR 506 (877)
T ss_pred cchhhHHHHHHHHHheechhhhHhHHHHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHHhhCHHHHHHHHhcCc
Confidence 1 1 1789999999999999999999999999999999
Q ss_pred hccCCccchHHHHHHHHHHHHHHHHhhcccccc
Q psy11027 218 LSLLPGHIQAVYVQNMLKILARILDSAESRDDA 250 (252)
Q Consensus 218 i~~l~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ 250 (252)
.+.+|+|+|+|||||+.|+|+.|+.+.|+++|.
T Consensus 507 ~~~lp~~iq~vyvqni~Klfc~~~~~~ee~~~~ 539 (877)
T KOG1059|consen 507 SDLLPGHIQAVYVQNIVKLFCSWCSQFEETKDF 539 (877)
T ss_pred cccCchHHHHHHHHHHHHHHHHHHhhcCcccch
Confidence 999999999999999999999999999888763
No 2
>KOG1062|consensus
Probab=100.00 E-value=2.3e-49 Score=382.17 Aligned_cols=239 Identities=29% Similarity=0.439 Sum_probs=224.2
Q ss_pred CcchHHHHHhcccCCHHHHHHHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHH
Q psy11027 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLK 80 (252)
Q Consensus 1 ~L~~N~i~kDL~s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~ 80 (252)
+|+||+++|||+|+|++++|+||+++|+|+++||+|+++++|.+++.+++|||||||++|++|++|+.||+++.|.+..+
T Consensus 106 lLltNslknDL~s~nq~vVglAL~alg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~ 185 (866)
T KOG1062|consen 106 LLLTNSLKNDLNSSNQYVVGLALCALGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFR 185 (866)
T ss_pred HHHHHHHHhhccCCCeeehHHHHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCChhHHHHHHHHHHHHHhhCch---hhhhhHHHHHHHhhc--------------CCChhHHHHHhhc-c-cc---
Q psy11027 81 EKLEDPDSGVQSAAVNVVCELARKNPK---NYLSLAPVFFKLMTT--------------SSNNWMLIKIIKL-R-LQ--- 138 (252)
Q Consensus 81 ~lL~d~d~~V~~~al~ll~ei~~~~p~---~~~~l~p~l~~lL~~--------------~~~pwlqikiLkl-r-L~--- 138 (252)
++|+|+||||+.+++.++.++|+.+|+ .|++++|.|+++|++ ++|||+|++|||+ | ||
T Consensus 186 ~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d 265 (866)
T KOG1062|consen 186 KLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQND 265 (866)
T ss_pred HHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999886 789999999999974 5899999999999 5 45
Q ss_pred --------chhhhhhhhhhcccCccchhchh--------------------hHHHHHhcCCCcchhHHHH---HH-----
Q psy11027 139 --------GVFAVNVVCELARKNPKNYLSLA--------------------PVFFKLMTTSSNNWMLIKI---IK----- 182 (252)
Q Consensus 139 --------~v~a~~v~~e~~~~n~~~~l~l~--------------------~~l~~lL~~~~nN~~~i~l---ik----- 182 (252)
+++|++...+|+.+|.+|.+ |+ ++++|||.+++||+||++| .|
T Consensus 266 ~daSd~M~DiLaqvatntdsskN~GnAI-LYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d 344 (866)
T KOG1062|consen 266 ADASDLMNDILAQVATNTDSSKNAGNAI-LYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQD 344 (866)
T ss_pred ccHHHHHHHHHHHHHhcccccccchhHH-HHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCC
Confidence 78999999999999999876 65 8999999999999999995 12
Q ss_pred -----------------------HhhHHHHHHH------HHHHHHHHhhccChhHHHHHHHhhhhccCC---ccchHHHH
Q psy11027 183 -----------------------LVLYAVLYAA------AWICGEFREHLDSPRATLEAMTRRGLSLLP---GHIQAVYV 230 (252)
Q Consensus 183 -----------------------l~~~e~l~~~------~~iv~~~~~~l~~~~~~~~~~l~~~i~~l~---~~~~~~~~ 230 (252)
=.++|+.|++ ..++.||++||...++-++..+..+|..++ +++..||+
T Consensus 345 ~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~i 424 (866)
T KOG1062|consen 345 PTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRVMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHI 424 (866)
T ss_pred cHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHH
Confidence 2299999998 499999999999999999999999999999 68999999
Q ss_pred HHHHHHHHHH
Q psy11027 231 QNMLKILARI 240 (252)
Q Consensus 231 ~~~~k~~~~~ 240 (252)
++|+|+|+++
T Consensus 425 dtml~Vl~~a 434 (866)
T KOG1062|consen 425 DTMLKVLKTA 434 (866)
T ss_pred HHHHHHHHhc
Confidence 9999999986
No 3
>KOG1077|consensus
Probab=100.00 E-value=5.3e-37 Score=293.15 Aligned_cols=238 Identities=24% Similarity=0.369 Sum_probs=206.3
Q ss_pred cchHHHHHhcccCCHHHHHHHHHHhhcCCchHhHHHHHHHHHHhhcC--CChHHHHHHHHHHHHHHhhCCCCcCc--hhH
Q psy11027 2 LTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTS--TKPYLRKKAVLMMYKVFLKFPDALRP--AFP 77 (252)
Q Consensus 2 L~~N~i~kDL~s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s--~~p~VRKkA~lal~ki~~~~Pd~l~~--~~~ 77 (252)
|++|+|+|||.|+||.+++|||+++||+|+.||++.+++||.|+|.| +.++|||||++|++|+||++||++.. |+.
T Consensus 111 lvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~ 190 (938)
T KOG1077|consen 111 LVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQ 190 (938)
T ss_pred HHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHH
Confidence 68999999999999999999999999999999999999999999976 58999999999999999999999974 669
Q ss_pred HHHhhhCCCChhHHHHHHHHHHHHHhhCchhhhhhHHHHHHHhhc----------------CCChhHHHHHhhc------
Q psy11027 78 RLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTT----------------SSNNWMLIKIIKL------ 135 (252)
Q Consensus 78 ~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~~l~p~l~~lL~~----------------~~~pwlqikiLkl------ 135 (252)
|+..+|+|+|.||+.++.+++..+++++|+.|...+|..++.|+. +|+||+|+|++|+
T Consensus 191 riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~ 270 (938)
T KOG1077|consen 191 RIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPT 270 (938)
T ss_pred HHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999988887762 5999999999998
Q ss_pred --------ccc----ch----------------hhh---------hhhhhhcccCccchhchhhHHHHHhcCCCcchhHH
Q psy11027 136 --------RLQ----GV----------------FAV---------NVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLI 178 (252)
Q Consensus 136 --------rL~----~v----------------~a~---------~v~~e~~~~n~~~~l~l~~~l~~lL~~~~nN~~~i 178 (252)
||. .+ .|+ .++.-|+.++ =+....+.+++||++++.|+||+
T Consensus 271 ~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~--ll~~~~~~Lg~fls~rE~NiRYL 348 (938)
T KOG1077|consen 271 PEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPE--LLSRAVNQLGQFLSHRETNIRYL 348 (938)
T ss_pred CCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHH--HHHHHHHHHHHHhhcccccchhh
Confidence 111 11 111 1333444433 23345599999999999999999
Q ss_pred HH----------------------------------HHHhhHHHHHHH------HHHHHHHHhhccChhHHHHHHHhhhh
Q psy11027 179 KI----------------------------------IKLVLYAVLYAA------AWICGEFREHLDSPRATLEAMTRRGL 218 (252)
Q Consensus 179 ~l----------------------------------ikl~~~e~l~~~------~~iv~~~~~~l~~~~~~~~~~l~~~i 218 (252)
++ +|-..+|+||+| +.||.+|++|+.+.+..++.++.-|+
T Consensus 349 aLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~IV~elLqYL~tAd~sireeivlKv 428 (938)
T KOG1077|consen 349 ALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQIVAELLQYLETADYSIREEIVLKV 428 (938)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 95 122389999999 59999999999999999999999999
Q ss_pred ccCC---ccchHHHHHHHHHHHHHHH
Q psy11027 219 SLLP---GHIQAVYVQNMLKILARIL 241 (252)
Q Consensus 219 ~~l~---~~~~~~~~~~~~k~~~~~~ 241 (252)
+.|+ ++|-.|||-.+++|..-+-
T Consensus 429 AILaEKyAtDy~WyVdviLqLiriag 454 (938)
T KOG1077|consen 429 AILAEKYATDYSWYVDVILQLIRIAG 454 (938)
T ss_pred HHHHHHhcCCcchhHHHHHHHHHHhc
Confidence 9999 6899999999999987653
No 4
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.97 E-value=2.3e-30 Score=247.98 Aligned_cols=237 Identities=30% Similarity=0.503 Sum_probs=194.2
Q ss_pred CcchHHHHHhcccCCHHHHHHHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCc-hhHHH
Q psy11027 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRP-AFPRL 79 (252)
Q Consensus 1 ~L~~N~i~kDL~s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~-~~~~l 79 (252)
+|++|+++|||+|+||+++|+||+++|+++++|+++.+.+.|.++++|++|||||+|++|+.++|+.+|+.++. +.+.+
T Consensus 78 ~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l 157 (526)
T PF01602_consen 78 ILIINSLQKDLNSPNPYIRGLALRTLSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKL 157 (526)
T ss_dssp HHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHH
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHhhhhhhcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999988 58999
Q ss_pred HhhhCCCChhHHHHHHHHHHHHHhhCchhhhhhHHHHHHHhh---cCCChhHHHHHhhc--ccc------c----hh---
Q psy11027 80 KEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMT---TSSNNWMLIKIIKL--RLQ------G----VF--- 141 (252)
Q Consensus 80 ~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~~l~p~l~~lL~---~~~~pwlqikiLkl--rL~------~----v~--- 141 (252)
.++|.|+|++|+.+|+.++.++ +.+|+.+..+.|.+++.|. +.++||+|++++++ +++ . ++
T Consensus 158 ~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l 236 (526)
T PF01602_consen 158 KQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPL 236 (526)
T ss_dssp HHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHH
T ss_pred hhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHH
Confidence 9999999999999999999999 6667776688888888877 67999999999998 222 1 10
Q ss_pred --------------hhhhhhhhcccCccchhchhhHHHHHhcCCCcchhHHHH---------------------------
Q psy11027 142 --------------AVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKI--------------------------- 180 (252)
Q Consensus 142 --------------a~~v~~e~~~~n~~~~l~l~~~l~~lL~~~~nN~~~i~l--------------------------- 180 (252)
+...+..... ++...-...+.+.+||.+++.|.+|+++
T Consensus 237 ~~~l~s~~~~V~~e~~~~i~~l~~-~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~~ 315 (526)
T PF01602_consen 237 LNLLQSSSPSVVYEAIRLIIKLSP-SPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVFNQSLILFFLLYD 315 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSS-SHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHHCS
T ss_pred HHHhhccccHHHHHHHHHHHHhhc-chHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhhhhhhhhheecCC
Confidence 0112221111 1111223458899999999999999996
Q ss_pred ----HHHhhHHHHHHH------HHHHHHHHhhc-cChhHHHHHHHhhhhccCC---ccchHHHHHHHHHHHHH
Q psy11027 181 ----IKLVLYAVLYAA------AWICGEFREHL-DSPRATLEAMTRRGLSLLP---GHIQAVYVQNMLKILAR 239 (252)
Q Consensus 181 ----ikl~~~e~l~~~------~~iv~~~~~~l-~~~~~~~~~~l~~~i~~l~---~~~~~~~~~~~~k~~~~ 239 (252)
+|...++.++.+ ..|++++.+|+ +.++..++..+..+|..++ +.+..||++.+++++..
T Consensus 316 ~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~ 388 (526)
T PF01602_consen 316 DDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEI 388 (526)
T ss_dssp SSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHC
T ss_pred CChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhh
Confidence 233488888887 48999999999 4446667777788888888 67889999999999874
No 5
>PTZ00429 beta-adaptin; Provisional
Probab=99.96 E-value=8.8e-28 Score=238.81 Aligned_cols=237 Identities=19% Similarity=0.237 Sum_probs=182.0
Q ss_pred CcchHHHHHhcccCCHHHHHHHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcC--chhHH
Q psy11027 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALR--PAFPR 78 (252)
Q Consensus 1 ~L~~N~i~kDL~s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~--~~~~~ 78 (252)
+|++|+|+||++|+||++||+||++||+|+.+++++.+...|.++++|++|||||+|++|+.|+|+.+|+.++ .+.++
T Consensus 104 lLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~ 183 (746)
T PTZ00429 104 LLAVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKD 183 (746)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHH
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999976 46799
Q ss_pred HHhhhCCCChhHHHHHHHHHHHHHhhCchhhhhhHHHHHHHhhcC--CChhHHHHHhhc--ccc----------------
Q psy11027 79 LKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTS--SNNWMLIKIIKL--RLQ---------------- 138 (252)
Q Consensus 79 l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~~l~p~l~~lL~~~--~~pwlqikiLkl--rL~---------------- 138 (252)
+.++|+|+|++|+.+|+.++.++...+|+.+....+.+.+++... .+||.|+.+|++ +..
T Consensus 184 L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~ 263 (746)
T PTZ00429 184 LVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLP 263 (746)
T ss_pred HHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 999999999999999999999999988876655555555555532 489999999998 211
Q ss_pred --------chh-hhhhhhhhccc-Cccchhch-hhHHH---HHhcCCCcchhHHHH------------------------
Q psy11027 139 --------GVF-AVNVVCELARK-NPKNYLSL-APVFF---KLMTTSSNNWMLIKI------------------------ 180 (252)
Q Consensus 139 --------~v~-a~~v~~e~~~~-n~~~~l~l-~~~l~---~lL~~~~nN~~~i~l------------------------ 180 (252)
+|+ |..+++..+.. ++. .+.- ...++ ..|.++++|.+|++|
T Consensus 264 ~Lq~~N~AVVl~Aik~il~l~~~~~~~-~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~ 342 (746)
T PTZ00429 264 RMSHQNPAVVMGAIKVVANLASRCSQE-LIERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVR 342 (746)
T ss_pred HhcCCCHHHHHHHHHHHHHhcCcCCHH-HHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcc
Confidence 111 22244433322 222 1111 01111 245678999999996
Q ss_pred ------HHHhhHHHHHHH------HHHHHHHHhhccChhHHHHHHHhhhhccCC---ccchHHHHHHHHHHHH
Q psy11027 181 ------IKLVLYAVLYAA------AWICGEFREHLDSPRATLEAMTRRGLSLLP---GHIQAVYVQNMLKILA 238 (252)
Q Consensus 181 ------ikl~~~e~l~~~------~~iv~~~~~~l~~~~~~~~~~l~~~i~~l~---~~~~~~~~~~~~k~~~ 238 (252)
+|...+|.++.+ ..|+.|+.+|..+.+..|....-..|..++ ++...|+|...+++++
T Consensus 343 ~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll~ 415 (746)
T PTZ00429 343 YSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDSVAPDCANLLLQIVD 415 (746)
T ss_pred cCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhc
Confidence 223388888887 389999999999887655555444455555 5677888888777654
No 6
>KOG1059|consensus
Probab=99.90 E-value=8e-24 Score=203.63 Aligned_cols=211 Identities=30% Similarity=0.412 Sum_probs=181.8
Q ss_pred hHHHHHhcccCCHHHHHHHHHHhhcCC--chHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHh
Q psy11027 4 TNMIRKDLNAQNQYDAGLALSALACFT--STDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKE 81 (252)
Q Consensus 4 ~N~i~kDL~s~n~~~~~LAL~~la~i~--~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~ 81 (252)
+..+++++.+++-.+.+-|+..++.+. +-||++ ...++.+.|++++..-||++|+|+.+.|+.+.|.+...++.+++
T Consensus 38 l~e~r~E~k~~d~~~k~~a~~kl~yl~mlg~d~sw-a~f~iveVmsssk~~~krigylaa~qSf~~~tdvlmL~tn~~rk 116 (877)
T KOG1059|consen 38 LEEIRQELKSDDLNVKSNAVLKLTYLEMLGVDMSW-AAFHIVEVMSSSKFQQKRIGYLAASQSFHDDTDVLMLTTNLLRK 116 (877)
T ss_pred HHHHHHHhhchhhhhhHHHHHHHHHHHHHcchHHH-HhhhhhhhhhhhhhHHHHHhHHHHHHhhcCCccHHHHHHHHHHH
Confidence 456788899999888888877776643 667777 67889999999999999999999999999999999999999999
Q ss_pred hhCCCChhHHHHHHHHHHHHHhhCchhhhhhHHHHHHHhhcCCChhHHHHHh----hc-------------cc----c--
Q psy11027 82 KLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKII----KL-------------RL----Q-- 138 (252)
Q Consensus 82 lL~d~d~~V~~~al~ll~ei~~~~p~~~~~l~p~l~~lL~~~~~pwlqikiL----kl-------------rL----~-- 138 (252)
.|+++|..-++-|+..+..+. .|+..+++++.++.+|+++ -||...|.+ |+ || .
T Consensus 117 dl~S~n~ye~giAL~GLS~fv--TpdLARDLa~Dv~tLL~ss-kpYvRKkAIl~lykvFLkYPeAlr~~FprL~EkLeDp 193 (877)
T KOG1059|consen 117 DLNSSNVYEVGLALSGLSCIV--TPDLARDLADDVFTLLNSS-KPYVRKKAILLLYKVFLKYPEALRPCFPRLVEKLEDP 193 (877)
T ss_pred HhccCccchhhheeccccccc--CchhhHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhccCC
Confidence 999888777777777776665 5888999999999999876 778776643 22 22 1
Q ss_pred ----chhhhhhhhhhcccCccchhchhhHHHHHhcCCCcchhHHHHHHHh----hHHHHHHHHHHHHHHHhhccChhH--
Q psy11027 139 ----GVFAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLV----LYAVLYAAAWICGEFREHLDSPRA-- 208 (252)
Q Consensus 139 ----~v~a~~v~~e~~~~n~~~~l~l~~~l~~lL~~~~nN~~~i~likl~----~~e~l~~~~~iv~~~~~~l~~~~~-- 208 (252)
..+||+|+||.+++||+||++|+|.+|++|++|+|||+.|+++||| ++|+++. ++.+.|++++++++.+
T Consensus 194 Dp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLg-KKLieplt~li~sT~AmS 272 (877)
T KOG1059|consen 194 DPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLG-KKLIEPITELMESTVAMS 272 (877)
T ss_pred CchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhh-hhhhhHHHHHHHhhHHHH
Confidence 3378999999999999999999999999999999999999999987 9999999 9999999999999987
Q ss_pred -HHHHHHhhhhcc
Q psy11027 209 -TLEAMTRRGLSL 220 (252)
Q Consensus 209 -~~~~~l~~~i~~ 220 (252)
++||+ .+.|+.
T Consensus 273 LlYECv-NTVVa~ 284 (877)
T KOG1059|consen 273 LLYECV-NTVVAV 284 (877)
T ss_pred HHHHHH-HHheee
Confidence 78887 998888
No 7
>KOG1060|consensus
Probab=99.81 E-value=1.7e-19 Score=175.21 Aligned_cols=204 Identities=23% Similarity=0.222 Sum_probs=160.5
Q ss_pred CcchHHHHHhcccCCHHHHHHHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHH
Q psy11027 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLK 80 (252)
Q Consensus 1 ~L~~N~i~kDL~s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~ 80 (252)
+|.+|++||+|.++||.+||-||+.|++|+.+-+++.+.-.|.++..+++|||||.|++|+.|+|..+|+.-....+.++
T Consensus 107 LLSIntfQk~L~DpN~LiRasALRvlSsIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~ 186 (968)
T KOG1060|consen 107 LLSINTFQKALKDPNQLIRASALRVLSSIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIK 186 (968)
T ss_pred eeeHHHHHhhhcCCcHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999998888889999
Q ss_pred hhhCCCChhHHHHHHHHHHHHHhhCchhhhhhHHHHHHHhhcCCChhHHHHHhhc-----ccc----chhhhhhhhhhc-
Q psy11027 81 EKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKL-----RLQ----GVFAVNVVCELA- 150 (252)
Q Consensus 81 ~lL~d~d~~V~~~al~ll~ei~~~~p~~~~~l~p~l~~lL~~~~~pwlqikiLkl-----rL~----~v~a~~v~~e~~- 150 (252)
++|.|++|+|+++|+..+.|+|..+-+..++....++++|..+ ++|.|+-++.. |.+ ++. .-..|+.
T Consensus 187 ~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dv-deWgQvvlI~mL~RYAR~~l~~P~~~--~~~~e~n~ 263 (968)
T KOG1060|consen 187 KLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDV-DEWGQVVLINMLTRYARHQLPDPTVV--DSSLEDNG 263 (968)
T ss_pred HHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccch-hhhhHHHHHHHHHHHHHhcCCCcccc--ccccccCc
Confidence 9999999999999999999999877776666777777777776 89999999887 322 110 0111111
Q ss_pred -ccCcc--------chhchhhHHHHHhc------CCCcchhHHHHHHHh-hHHHHHHHHHHHHHHHhhccChhH
Q psy11027 151 -RKNPK--------NYLSLAPVFFKLMT------TSSNNWMLIKIIKLV-LYAVLYAAAWICGEFREHLDSPRA 208 (252)
Q Consensus 151 -~~n~~--------~~l~l~~~l~~lL~------~~~nN~~~i~likl~-~~e~l~~~~~iv~~~~~~l~~~~~ 208 (252)
+.|.+ .| .-.|.+..||. .|+|-...++..+++ -+.+...+..|+.+++..|+.++.
T Consensus 264 ~~~~~~~~~~~~~~P~-~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~~~i~kaLvrLLrs~~~ 336 (968)
T KOG1060|consen 264 RSCNLKDKYNEIRTPY-VNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQVTKIAKALVRLLRSNRE 336 (968)
T ss_pred ccccccccccccCCCc-ccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHHHHHHHHHHHHHhcCCc
Confidence 11111 12 24567777764 477777777766654 333333556788888887777754
No 8
>KOG1061|consensus
Probab=99.74 E-value=5e-17 Score=158.40 Aligned_cols=135 Identities=27% Similarity=0.453 Sum_probs=118.8
Q ss_pred CcchHHHHHhcccCCHHHHHHHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCc--hhHH
Q psy11027 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRP--AFPR 78 (252)
Q Consensus 1 ~L~~N~i~kDL~s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~--~~~~ 78 (252)
++++|++.||..++||.++++|++++++++.+.+.+.+..++.+++.+.+||+||+|+.|..++|+.+|+.... +.+.
T Consensus 85 ~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~ 164 (734)
T KOG1061|consen 85 ILAVNTFLKDCEDPNPLIRALALRTMGCLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDA 164 (734)
T ss_pred HhhhhhhhccCCCCCHHHHHHHhhceeeEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999874 5799
Q ss_pred HHhhhCCCChhHHHHHHHHHHHHHhhCch-hhhhhHHHHHH-Hhhc--CCChhHHHHHhhc
Q psy11027 79 LKEKLEDPDSGVQSAAVNVVCELARKNPK-NYLSLAPVFFK-LMTT--SSNNWMLIKIIKL 135 (252)
Q Consensus 79 l~~lL~d~d~~V~~~al~ll~ei~~~~p~-~~~~l~p~l~~-lL~~--~~~pwlqikiLkl 135 (252)
+++++.|.||.|+++|+..+.+|...+|+ ....+.+.+.. +|.. -.++|.|+-+|+.
T Consensus 165 L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~ 225 (734)
T KOG1061|consen 165 LKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDC 225 (734)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999999999999999999999998885 33334443332 3332 2589999999887
No 9
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=99.66 E-value=5e-16 Score=153.44 Aligned_cols=104 Identities=30% Similarity=0.398 Sum_probs=98.2
Q ss_pred CcchHHHHHhcccCCHHHHHHHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCch--hHH
Q psy11027 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPA--FPR 78 (252)
Q Consensus 1 ~L~~N~i~kDL~s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~--~~~ 78 (252)
+|++|+++||+.|+||++||.||++++.++.+++...+.+.|.+++.|++|||||+|++|+.++|+.+|+..... ...
T Consensus 91 lLavNti~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~ 170 (757)
T COG5096 91 LLAVNTIQKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDI 170 (757)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHH
Confidence 478999999999999999999999999999999999999999999999999999999999999999999998854 577
Q ss_pred HHhhhCCCChhHHHHHHHHHHHHHhh
Q psy11027 79 LKEKLEDPDSGVQSAAVNVVCELARK 104 (252)
Q Consensus 79 l~~lL~d~d~~V~~~al~ll~ei~~~ 104 (252)
+..++.|.||-|+.+|+..+.++...
T Consensus 171 l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 171 LKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHhhCCCchHHHHHHHHHHHhchh
Confidence 77888899999999999999999765
No 10
>KOG1058|consensus
Probab=99.46 E-value=4.4e-13 Score=130.57 Aligned_cols=102 Identities=24% Similarity=0.369 Sum_probs=93.9
Q ss_pred CcchHHHHHhcccCCHHHHHHHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHH
Q psy11027 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLK 80 (252)
Q Consensus 1 ~L~~N~i~kDL~s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~ 80 (252)
+|++|.++|||+|||+|+||..|++++.+..+|+.+.+.|.|..++.|.++||||-|++|+..+|+..-+++++.-+.+.
T Consensus 98 ILvcna~RkDLQHPNEyiRG~TLRFLckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~ 177 (948)
T KOG1058|consen 98 ILVCNAYRKDLQHPNEYIRGSTLRFLCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIE 177 (948)
T ss_pred HHHHHHHhhhccCchHhhcchhhhhhhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999998888888888787
Q ss_pred hhhC-CCChhHHHHHHHHHHHHH
Q psy11027 81 EKLE-DPDSGVQSAAVNVVCELA 102 (252)
Q Consensus 81 ~lL~-d~d~~V~~~al~ll~ei~ 102 (252)
+.|. ++||++--+|.-.+..+-
T Consensus 178 ~fL~~e~DpsCkRNAFi~L~~~D 200 (948)
T KOG1058|consen 178 SFLLTEQDPSCKRNAFLMLFTTD 200 (948)
T ss_pred HHHHhccCchhHHHHHHHHHhcC
Confidence 7774 899999988877776653
No 11
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.78 E-value=9.1e-08 Score=80.38 Aligned_cols=108 Identities=22% Similarity=0.334 Sum_probs=96.1
Q ss_pred CHHHHHHHHHHhh--cCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCch-hHHHHhhhCCCChhHH
Q psy11027 15 NQYDAGLALSALA--CFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPA-FPRLKEKLEDPDSGVQ 91 (252)
Q Consensus 15 n~~~~~LAL~~la--~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~-~~~l~~lL~d~d~~V~ 91 (252)
||.+++-|+.++| +++-+.+++...+.+.+.|.+++|.|||.|..++.++...+.--++.- +..+...+.|+|+.|.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir 80 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIR 80 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHH
Confidence 6889999999999 566899999999999999999999999999999999999887666654 4788889999999999
Q ss_pred HHHHHHHHHHHhh-CchhhhhhHHHHHHHhhc
Q psy11027 92 SAAVNVVCELARK-NPKNYLSLAPVFFKLMTT 122 (252)
Q Consensus 92 ~~al~ll~ei~~~-~p~~~~~l~p~l~~lL~~ 122 (252)
..|..++.++..+ +|+.+....|.++..|++
T Consensus 81 ~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 81 SLARSFFSELLKKRNPNIIYNNFPELISSLNN 112 (178)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 9999999999987 788888888887777664
No 12
>PTZ00429 beta-adaptin; Provisional
Probab=98.65 E-value=1.6e-06 Score=87.39 Aligned_cols=230 Identities=18% Similarity=0.190 Sum_probs=156.3
Q ss_pred hHHHHHhcccCCHHHHHHHHHHh-hcC-CchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHh
Q psy11027 4 TNMIRKDLNAQNQYDAGLALSAL-ACF-TSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKE 81 (252)
Q Consensus 4 ~N~i~kDL~s~n~~~~~LAL~~l-a~i-~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~ 81 (252)
++.|+++|++++...+--|++.+ +.+ .+.|+.. ++++|.+++.+.+.-+||-.|+.+.+.-+..||.....++.+.+
T Consensus 34 ~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS~-LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~K 112 (746)
T PTZ00429 34 GAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVSY-LFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQ 112 (746)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCchH-HHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHH
Confidence 46799999999999998898866 444 3567755 99999999999999999999999999999999998888999999
Q ss_pred hhCCCChhHHHHHHHHHHHHHhhCchhhhhhHHHHHHHhhcCCChhHHHH----Hhhc-cc------------------c
Q psy11027 82 KLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIK----IIKL-RL------------------Q 138 (252)
Q Consensus 82 lL~d~d~~V~~~al~ll~ei~~~~p~~~~~l~p~l~~lL~~~~~pwlqik----iLkl-rL------------------~ 138 (252)
++.|+||.+.+.|+-.++.+. .|+....+.+.+.+.|++ ++|+...+ +.|+ +. .
T Consensus 113 Dl~d~Np~IRaLALRtLs~Ir--~~~i~e~l~~~lkk~L~D-~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~ 189 (746)
T PTZ00429 113 DTTNSSPVVRALAVRTMMCIR--VSSVLEYTLEPLRRAVAD-PDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLN 189 (746)
T ss_pred HcCCCCHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhc
Confidence 999999999999999888775 356666666666666654 46665442 2222 10 0
Q ss_pred ----ch--hhhhhhhhhcccCccchhchhhHHHHHhc--CCCcchhHHHHHHHh-------------------------h
Q psy11027 139 ----GV--FAVNVVCELARKNPKNYLSLAPVFFKLMT--TSSNNWMLIKIIKLV-------------------------L 185 (252)
Q Consensus 139 ----~v--~a~~v~~e~~~~n~~~~l~l~~~l~~lL~--~~~nN~~~i~likl~-------------------------~ 185 (252)
.| -|..+++|-...+|+.+-...+.+.+++. ..-+-|--+.+++++ .
T Consensus 190 D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N 269 (746)
T PTZ00429 190 DNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQN 269 (746)
T ss_pred CCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCC
Confidence 22 23446666665555533223355566654 233677766655432 3
Q ss_pred HHHHHHHHHHHHHHHhhccChh---HHHHHHHhhhhccCC--ccchHHHHHHHHHHHH
Q psy11027 186 YAVLYAAAWICGEFREHLDSPR---ATLEAMTRRGLSLLP--GHIQAVYVQNMLKILA 238 (252)
Q Consensus 186 ~e~l~~~~~iv~~~~~~l~~~~---~~~~~~l~~~i~~l~--~~~~~~~~~~~~k~~~ 238 (252)
..+++++++.+-.+..+.. ++ ..++.+-.+.++.+. +.++++-++++..+..
T Consensus 270 ~AVVl~Aik~il~l~~~~~-~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~ 326 (746)
T PTZ00429 270 PAVVMGAIKVVANLASRCS-QELIERCTVRVNTALLTLSRRDAETQYIVCKNIHALLV 326 (746)
T ss_pred HHHHHHHHHHHHHhcCcCC-HHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHH
Confidence 4456665666555544431 22 133344455566654 5689999988866543
No 13
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.63 E-value=1.2e-06 Score=84.27 Aligned_cols=54 Identities=20% Similarity=0.343 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHHHHhhccC---hhHHHHHHHhhhhccCCccchHHHHHHHHHHHHH
Q psy11027 185 LYAVLYAAAWICGEFREHLDS---PRATLEAMTRRGLSLLPGHIQAVYVQNMLKILAR 239 (252)
Q Consensus 185 ~~e~l~~~~~iv~~~~~~l~~---~~~~~~~~l~~~i~~l~~~~~~~~~~~~~k~~~~ 239 (252)
..+.+-+++|++|||.++... +.+.++.. ..+...-++..+..-+++..|++.+
T Consensus 428 ~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l-~~~~~~~~~~vk~~ilt~~~Kl~~~ 484 (526)
T PF01602_consen 428 SPEALAAAIWILGEYGELIENTESAPDILRSL-IENFIEESPEVKLQILTALAKLFKR 484 (526)
T ss_dssp SHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHH-HHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcccCCcccccccHHHHHHHH-HHhhccccHHHHHHHHHHHHHHHhh
Confidence 556777779999999999998 55555555 4455555577889999999999865
No 14
>KOG1078|consensus
Probab=98.16 E-value=4.8e-05 Score=75.61 Aligned_cols=133 Identities=13% Similarity=0.225 Sum_probs=109.6
Q ss_pred CcchHHHHHhcccCCHHHHHHHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHH
Q psy11027 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLK 80 (252)
Q Consensus 1 ~L~~N~i~kDL~s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~ 80 (252)
+++|+++.||.+..++..++-|+++++.|-...|.+..-.-+....-+.+|.++-.|....++++...++.+..|.+.+.
T Consensus 99 iivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~~~iery~kqaivd~~~avSsaalvss~hll~~~~~~vkrw~neiq 178 (865)
T KOG1078|consen 99 IIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTMLQAIERYMKQAIVDKNPAVSSAALVSSYHLLPISFDVVKRWANEVQ 178 (865)
T ss_pred hhhhHHHHhhccCCCcchhHHHHHHHHhhcCcchhHHHHHHHHhHeeccccccchHHHHHHhhhhcccHHHHHHHHHhhh
Confidence 46899999999999999999999999999999999998888889999999999999999999999999999999999999
Q ss_pred hhhCCCChhHHHHHHHHHHHHHhhCchhhhhhHHHHHHHhhcCCChhHHHHHhhc
Q psy11027 81 EKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKL 135 (252)
Q Consensus 81 ~lL~d~d~~V~~~al~ll~ei~~~~p~~~~~l~p~l~~lL~~~~~pwlqikiLkl 135 (252)
+-.++.|..|.--|+.+++.+-+..--...+++..+.+ +.+.+|+..+-++|.
T Consensus 179 ea~~s~~~m~QyHalglLyqirk~drla~sklv~~~~~--~~~~~~~A~~~lir~ 231 (865)
T KOG1078|consen 179 EAVNSDNIMVQYHALGLLYQIRKNDRLAVSKLVQKFTR--GSLKSPLAVCMLIRI 231 (865)
T ss_pred hccCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHcc--ccccchhHHHHHHHH
Confidence 99999999999999999999976432222233333333 334566665555544
No 15
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.70 E-value=0.00024 Score=51.68 Aligned_cols=84 Identities=23% Similarity=0.245 Sum_probs=65.3
Q ss_pred HHHHHhc-ccCCHHHHHHHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhh
Q psy11027 5 NMIRKDL-NAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKL 83 (252)
Q Consensus 5 N~i~kDL-~s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL 83 (252)
..+.+-| +++|+.++.-|+.+++.++.++. .+.+.+++.|++|.||..|+.++.++= + +..++.+.+++
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~~~~----~~~L~~~l~d~~~~vr~~a~~aL~~i~--~----~~~~~~L~~~l 71 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGDPEA----IPALIELLKDEDPMVRRAAARALGRIG--D----PEAIPALIKLL 71 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTHHHH----HHHHHHHHTSSSHHHHHHHHHHHHCCH--H----HHTHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCHhH----HHHHHHHHcCCCHHHHHHHHHHHHHhC--C----HHHHHHHHHHH
Confidence 3466777 89999999999999999998754 666777789999999999999998762 2 23567788888
Q ss_pred CC-CChhHHHHHHHHH
Q psy11027 84 ED-PDSGVQSAAVNVV 98 (252)
Q Consensus 84 ~d-~d~~V~~~al~ll 98 (252)
.| ++..|...|+..+
T Consensus 72 ~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 72 QDDDDEVVREAAAEAL 87 (88)
T ss_dssp TC-SSHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHhhc
Confidence 65 5667777666543
No 16
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.53 E-value=0.0088 Score=58.19 Aligned_cols=125 Identities=22% Similarity=0.254 Sum_probs=90.2
Q ss_pred HhcccCCHHHHHHHHHHh----hcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcC-----chhHHH
Q psy11027 9 KDLNAQNQYDAGLALSAL----ACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRL 79 (252)
Q Consensus 9 kDL~s~n~~~~~LAL~~l----a~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~-----~~~~~l 79 (252)
..|++.|.....++...+ ......++.+...+.+.+.+.|++|.||+-|+-++.++.+.....+. ..++.+
T Consensus 45 ~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i 124 (503)
T PF10508_consen 45 DCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLI 124 (503)
T ss_pred HHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHH
Confidence 345555655555555444 44556677888999999999999999999999999998876655332 457899
Q ss_pred HhhhCCCChhHHHHHHHHHHHHHhhCchhhhhh-----HHHHHHHhhcCCChhHHHHHhhc
Q psy11027 80 KEKLEDPDSGVQSAAVNVVCELARKNPKNYLSL-----APVFFKLMTTSSNNWMLIKIIKL 135 (252)
Q Consensus 80 ~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~~l-----~p~l~~lL~~~~~pwlqikiLkl 135 (252)
...|.|+|.+|...|..++..+++..+. ...+ .+.+.+++.+ +++-.+.+++.+
T Consensus 125 ~~~L~~~d~~Va~~A~~~L~~l~~~~~~-~~~l~~~~~~~~L~~l~~~-~~~~vR~Rv~el 183 (503)
T PF10508_consen 125 IQCLRDPDLSVAKAAIKALKKLASHPEG-LEQLFDSNLLSKLKSLMSQ-SSDIVRCRVYEL 183 (503)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHhCCchh-HHHHhCcchHHHHHHHHhc-cCHHHHHHHHHH
Confidence 9999999999999999999999986443 3333 5566666655 244445555444
No 17
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.45 E-value=0.00059 Score=51.69 Aligned_cols=97 Identities=19% Similarity=0.180 Sum_probs=48.4
Q ss_pred HHHHhcccCCHHHHHHHHHHhhcCCc--hHhHH-----HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcC-----
Q psy11027 6 MIRKDLNAQNQYDAGLALSALACFTS--TDLAR-----DLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALR----- 73 (252)
Q Consensus 6 ~i~kDL~s~n~~~~~LAL~~la~i~~--~el~~-----~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~----- 73 (252)
.+.+=+.++|+..+.-|+.++++++. ++..+ ...+.+.+++.++++.+++.|+-|+..+....|+...
T Consensus 11 ~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 90 (120)
T cd00020 11 ALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEA 90 (120)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHC
Confidence 34444455555555555555555543 22222 2344555555555556666665555555544432111
Q ss_pred chhHHHHhhhCCCChhHHHHHHHHHHHHH
Q psy11027 74 PAFPRLKEKLEDPDSGVQSAAVNVVCELA 102 (252)
Q Consensus 74 ~~~~~l~~lL~d~d~~V~~~al~ll~ei~ 102 (252)
...+.+.+.|++.+..+...++.++..++
T Consensus 91 g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 91 GGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred CChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 23455555555555555555555555443
No 18
>KOG1062|consensus
Probab=97.41 E-value=0.00074 Score=67.56 Aligned_cols=90 Identities=18% Similarity=0.191 Sum_probs=82.7
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhhhhhHHHHHHHh
Q psy11027 41 DIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM 120 (252)
Q Consensus 41 ~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~~l~p~l~~lL 120 (252)
+-.|+..|++..-||.+|+|+.=+.....|++...++.++++|+++|..|++.|++.+..++ +|+..+.++|.+.++|
T Consensus 74 eclKLias~~f~dKRiGYLaamLlLdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i~--s~EmardlapeVe~Ll 151 (866)
T KOG1062|consen 74 ECLKLIASDNFLDKRIGYLAAMLLLDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNIC--SPEMARDLAPEVERLL 151 (866)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHhccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccC--CHHHhHHhhHHHHHHH
Confidence 45688889999999999999999999999999999999999999999999999999999998 6899999999999999
Q ss_pred hcCCChhHHHHHh
Q psy11027 121 TTSSNNWMLIKII 133 (252)
Q Consensus 121 ~~~~~pwlqikiL 133 (252)
++ ++|+...|..
T Consensus 152 ~~-~~~~irKKA~ 163 (866)
T KOG1062|consen 152 QH-RDPYIRKKAA 163 (866)
T ss_pred hC-CCHHHHHHHH
Confidence 88 6999988764
No 19
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.36 E-value=0.006 Score=54.31 Aligned_cols=122 Identities=19% Similarity=0.270 Sum_probs=86.8
Q ss_pred cCCHHHHHHHHHHhhcCCchHhHHHH------HHHHHHhhcCCChHHHHHHHHHHHHHH--hhCCCCcCchhHHHHhhhC
Q psy11027 13 AQNQYDAGLALSALACFTSTDLARDL------ANDIMMLLTSTKPYLRKKAVLMMYKVF--LKFPDALRPAFPRLKEKLE 84 (252)
Q Consensus 13 s~n~~~~~LAL~~la~i~~~el~~~l------~~~V~~lL~s~~p~VRKkA~lal~ki~--~~~Pd~l~~~~~~l~~lL~ 84 (252)
+.+|+++..|+.++++.+.-...+++ .+-|.+++.+++|.+|.+|.-|+.-+- ..+.+.++.+++.+.+...
T Consensus 24 t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~ 103 (254)
T PF04826_consen 24 TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETV 103 (254)
T ss_pred CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHh
Confidence 46899999999999998754444443 466889999999999999988886432 2222334456666666543
Q ss_pred -C-CChhHHHHHHHHHHHHHhhCc--hhhhhhHHHHHHHhhcCCChhHHHHHhhc
Q psy11027 85 -D-PDSGVQSAAVNVVCELARKNP--KNYLSLAPVFFKLMTTSSNNWMLIKIIKL 135 (252)
Q Consensus 85 -d-~d~~V~~~al~ll~ei~~~~p--~~~~~l~p~l~~lL~~~~~pwlqikiLkl 135 (252)
+ -|..+..+++.++..+.-.+. ......+|.++++|.+. +.=.|...||+
T Consensus 104 s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G-~~~~k~~vLk~ 157 (254)
T PF04826_consen 104 SSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSG-SEKTKVQVLKV 157 (254)
T ss_pred cCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcC-ChHHHHHHHHH
Confidence 3 378899999999999865432 23456778888888764 55567777776
No 20
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.35 E-value=0.0099 Score=57.83 Aligned_cols=130 Identities=17% Similarity=0.224 Sum_probs=102.7
Q ss_pred HHHHHhcccCCHHHHHHHHHHhhcCCc--hHhH-----HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCC--c-C-
Q psy11027 5 NMIRKDLNAQNQYDAGLALSALACFTS--TDLA-----RDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDA--L-R- 73 (252)
Q Consensus 5 N~i~kDL~s~n~~~~~LAL~~la~i~~--~el~-----~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~--l-~- 73 (252)
..+++=|.++++.++.+|++.++++.. ...+ ..+.+.|..++.+++..|.+.|+-++.++.+..+.. + .
T Consensus 80 ~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~ 159 (503)
T PF10508_consen 80 PFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDS 159 (503)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCc
Confidence 356778899999999999999988642 2222 358899999999999999999999999998754432 1 2
Q ss_pred chhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhhh-----hhHHHHHHHhhcCCChhHHHHHhhc
Q psy11027 74 PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL-----SLAPVFFKLMTTSSNNWMLIKIIKL 135 (252)
Q Consensus 74 ~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~-----~l~p~l~~lL~~~~~pwlqikiLkl 135 (252)
...+.+.+++...|.-+...+..++.+++..+++.+. ++.+.+++-|.+ .|.-+|...+.+
T Consensus 160 ~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~-dDiLvqlnalel 225 (503)
T PF10508_consen 160 NLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDS-DDILVQLNALEL 225 (503)
T ss_pred chHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcC-ccHHHHHHHHHH
Confidence 2367788888777888899999999999999987542 367778887777 688888877776
No 21
>PRK09687 putative lyase; Provisional
Probab=97.29 E-value=0.002 Score=58.05 Aligned_cols=102 Identities=15% Similarity=0.199 Sum_probs=61.6
Q ss_pred cccCCHHHHHHHHHHhhcCCchHh--HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhCCCCh
Q psy11027 11 LNAQNQYDAGLALSALACFTSTDL--ARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDS 88 (252)
Q Consensus 11 L~s~n~~~~~LAL~~la~i~~~el--~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~d~d~ 88 (252)
++++++.+++-|..++|.++.++. ...........+.++++.||+.|+.++.++ .+ +..++.|.+.|+|+|+
T Consensus 100 ~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~--~~----~~ai~~L~~~L~d~~~ 173 (280)
T PRK09687 100 LEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVI--ND----EAAIPLLINLLKDPNG 173 (280)
T ss_pred hcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhcc--CC----HHHHHHHHHHhcCCCH
Confidence 366777777777777777765443 223445555666677777777777777533 11 2245667777777777
Q ss_pred hHHHHHHHHHHHHHhhCchhhhhhHHHHHHHhhc
Q psy11027 89 GVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTT 122 (252)
Q Consensus 89 ~V~~~al~ll~ei~~~~p~~~~~l~p~l~~lL~~ 122 (252)
.|...|+..+-.+...+| ...|.+++.|..
T Consensus 174 ~VR~~A~~aLg~~~~~~~----~~~~~L~~~L~D 203 (280)
T PRK09687 174 DVRNWAAFALNSNKYDNP----DIREAFVAMLQD 203 (280)
T ss_pred HHHHHHHHHHhcCCCCCH----HHHHHHHHHhcC
Confidence 777777766666622222 344555555543
No 22
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.13 E-value=0.0017 Score=49.09 Aligned_cols=86 Identities=21% Similarity=0.257 Sum_probs=70.6
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcC-----chhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchh----
Q psy11027 38 LANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKN---- 108 (252)
Q Consensus 38 l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~-----~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~---- 108 (252)
+.+.+.+++.++++.+|+.|+.|+..+...+|+... ..++.+.++|+|+|+.|...++..+..++...|..
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 678888999999999999999999999887665433 56799999999999999999999999999876531
Q ss_pred h-hhhHHHHHHHhhcC
Q psy11027 109 Y-LSLAPVFFKLMTTS 123 (252)
Q Consensus 109 ~-~~l~p~l~~lL~~~ 123 (252)
+ .++.|.+.+.|...
T Consensus 88 ~~~g~l~~l~~~l~~~ 103 (120)
T cd00020 88 LEAGGVPKLVNLLDSS 103 (120)
T ss_pred HHCCChHHHHHHHhcC
Confidence 2 23678888877653
No 23
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.11 E-value=0.0036 Score=47.60 Aligned_cols=77 Identities=22% Similarity=0.235 Sum_probs=61.5
Q ss_pred HHHHHHHhhcCC-chHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcC----chhHHHHhhhCCCChhHHHH
Q psy11027 19 AGLALSALACFT-STDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALR----PAFPRLKEKLEDPDSGVQSA 93 (252)
Q Consensus 19 ~~LAL~~la~i~-~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~----~~~~~l~~lL~d~d~~V~~~ 93 (252)
.|+|=.+++.-. ..+..+.+.++|.++++++++.||--|+-|++.+.+..++.+. +.|+.+.++..|+|+.|..+
T Consensus 8 i~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~ 87 (97)
T PF12755_consen 8 IGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSA 87 (97)
T ss_pred HHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHH
Confidence 444444443322 5667778999999999999999999999999999998886553 34678889999999999988
Q ss_pred HH
Q psy11027 94 AV 95 (252)
Q Consensus 94 al 95 (252)
|-
T Consensus 88 a~ 89 (97)
T PF12755_consen 88 AE 89 (97)
T ss_pred HH
Confidence 83
No 24
>KOG2171|consensus
Probab=97.08 E-value=0.045 Score=56.98 Aligned_cols=111 Identities=21% Similarity=0.252 Sum_probs=86.8
Q ss_pred ccCCHHHHHHHHHHh-hcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCc----hhHHHHhhhCCC
Q psy11027 12 NAQNQYDAGLALSAL-ACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRP----AFPRLKEKLEDP 86 (252)
Q Consensus 12 ~s~n~~~~~LAL~~l-a~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~----~~~~l~~lL~d~ 86 (252)
.+.|....--||..+ ++++..-+++.+.+.+...+.|++++-|+.|.+|+..+-.-+++.+.. ..+.+...|+|+
T Consensus 322 ~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dp 401 (1075)
T KOG2171|consen 322 EETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDP 401 (1075)
T ss_pred ccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCC
Confidence 344555555566666 458889999999999999999999999999999999999999887763 457788899999
Q ss_pred ChhHHHHHHHHHHHHHhhCc-h---hhhh-hHHHHHHHhhc
Q psy11027 87 DSGVQSAAVNVVCELARKNP-K---NYLS-LAPVFFKLMTT 122 (252)
Q Consensus 87 d~~V~~~al~ll~ei~~~~p-~---~~~~-l~p~l~~lL~~ 122 (252)
+|.|.-+|++++-.++.+-+ + .++. +.|.++..|.+
T Consensus 402 hprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~ 442 (1075)
T KOG2171|consen 402 HPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDS 442 (1075)
T ss_pred CHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcc
Confidence 99999999999999987653 2 2333 33455555553
No 25
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.06 E-value=0.028 Score=46.97 Aligned_cols=95 Identities=24% Similarity=0.397 Sum_probs=72.4
Q ss_pred ChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhhhhhH-HHHHHHhhcCCChhH
Q psy11027 50 KPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLA-PVFFKLMTTSSNNWM 128 (252)
Q Consensus 50 ~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~~l~-p~l~~lL~~~~~pwl 128 (252)
+|.||--|+.++.-+...+|..++++.+.+.+.|.|+++.|...|+.++..+...+.-.+++.. ..+...+... +|..
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~-~~~I 79 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDE-NPEI 79 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCC-CHHH
Confidence 5789999999999999999999999999999999999999999999999999877654444433 5555555432 3333
Q ss_pred HHHHhhccccchhhhhhhhhhccc-Ccc
Q psy11027 129 LIKIIKLRLQGVFAVNVVCELARK-NPK 155 (252)
Q Consensus 129 qikiLklrL~~v~a~~v~~e~~~~-n~~ 155 (252)
+- .|...|.|...+ +|.
T Consensus 80 r~----------~A~~~~~e~~~~~~~~ 97 (178)
T PF12717_consen 80 RS----------LARSFFSELLKKRNPN 97 (178)
T ss_pred HH----------HHHHHHHHHHHhccch
Confidence 22 344467777665 555
No 26
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=96.88 E-value=0.086 Score=54.84 Aligned_cols=113 Identities=18% Similarity=0.246 Sum_probs=82.9
Q ss_pred hHHHHHhcccCCHHHHHHHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhh
Q psy11027 4 TNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKL 83 (252)
Q Consensus 4 ~N~i~kDL~s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL 83 (252)
++.+..-|.++++.++-.|+..++.++.++. .+.+.+.|.++++.||..|+-++.++-...|+ -+.+...|
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~----~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-----~~~L~~~L 693 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETTPPGF----GPALVAALGDGAAAVRRAAAEGLRELVEVLPP-----APALRDHL 693 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhcchhH----HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-----hHHHHHHh
Confidence 4677888999999999999999999997664 45566888999999999999998776432222 24677788
Q ss_pred CCCChhHHHHHHHHHHHHHhhCchhhhhhHHHHHHHhhcCCChhHHHHHh
Q psy11027 84 EDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKII 133 (252)
Q Consensus 84 ~d~d~~V~~~al~ll~ei~~~~p~~~~~l~p~l~~lL~~~~~pwlqikiL 133 (252)
.|+|+.|..+|+..+..+....+ +.+++.|.+ ++|+.+...+
T Consensus 694 ~~~d~~VR~~A~~aL~~~~~~~~-------~~l~~~L~D-~d~~VR~~Av 735 (897)
T PRK13800 694 GSPDPVVRAAALDVLRALRAGDA-------ALFAAALGD-PDHRVRIEAV 735 (897)
T ss_pred cCCCHHHHHHHHHHHHhhccCCH-------HHHHHHhcC-CCHHHHHHHH
Confidence 89999999999988877642222 234444543 4666655443
No 27
>PRK09687 putative lyase; Provisional
Probab=96.86 E-value=0.0094 Score=53.70 Aligned_cols=97 Identities=20% Similarity=0.223 Sum_probs=73.9
Q ss_pred chHHHHHhcccCCHHHHHHHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCC-cCchhHHHHh
Q psy11027 3 TTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDA-LRPAFPRLKE 81 (252)
Q Consensus 3 ~~N~i~kDL~s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~-l~~~~~~l~~ 81 (252)
..+.+.+=|.++|..++--|..+++.++.++... .+.+++.|+++.+|+-|+-++.++=. |+. ....++.+..
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~~~~~----~l~~ll~~~d~~vR~~A~~aLg~lg~--~~~~~~~a~~~L~~ 97 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGGQDVFR----LAIELCSSKNPIERDIGADILSQLGM--AKRCQDNVFNILNN 97 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCcchHHH----HHHHHHhCCCHHHHHHHHHHHHhcCC--CccchHHHHHHHHH
Confidence 3556677788999999999999999999765544 45667888999999999999888632 322 2345677777
Q ss_pred h-hCCCChhHHHHHHHHHHHHHhhC
Q psy11027 82 K-LEDPDSGVQSAAVNVVCELARKN 105 (252)
Q Consensus 82 l-L~d~d~~V~~~al~ll~ei~~~~ 105 (252)
+ ++|+++.|..+|+..+-+++...
T Consensus 98 l~~~D~d~~VR~~A~~aLG~~~~~~ 122 (280)
T PRK09687 98 LALEDKSACVRASAINATGHRCKKN 122 (280)
T ss_pred HHhcCCCHHHHHHHHHHHhcccccc
Confidence 6 67899999999999888886543
No 28
>KOG0166|consensus
Probab=96.79 E-value=0.16 Score=49.46 Aligned_cols=128 Identities=17% Similarity=0.214 Sum_probs=95.4
Q ss_pred HHHhcccCCHHHHHHHHHHhhcCCc-hHhHHH------HHHHHHHhhcCCCh-HHHHHHHHHHHHHHhhC-CC----CcC
Q psy11027 7 IRKDLNAQNQYDAGLALSALACFTS-TDLARD------LANDIMMLLTSTKP-YLRKKAVLMMYKVFLKF-PD----ALR 73 (252)
Q Consensus 7 i~kDL~s~n~~~~~LAL~~la~i~~-~el~~~------l~~~V~~lL~s~~p-~VRKkA~lal~ki~~~~-Pd----~l~ 73 (252)
+.+=+.|+++.++.-|.-++|||.. ...+|+ ...++..++..+.+ ...|.+.-++..+++.. |. .+.
T Consensus 157 fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~ 236 (514)
T KOG0166|consen 157 FIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVA 236 (514)
T ss_pred HHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHH
Confidence 4566789999999999999999983 334443 33566666666554 68889999999999865 53 334
Q ss_pred chhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhh-----hhhHHHHHHHhhcCCChhHHHHHhhc
Q psy11027 74 PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY-----LSLAPVFFKLMTTSSNNWMLIKIIKL 135 (252)
Q Consensus 74 ~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~-----~~l~p~l~~lL~~~~~pwlqikiLkl 135 (252)
...|-+..+|.+.|+.|..-|+-.+.++....++.. .+.+|.++.+|.+... =.++..||.
T Consensus 237 ~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~-~v~~PaLRa 302 (514)
T KOG0166|consen 237 PILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSP-KVVTPALRA 302 (514)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCc-ccccHHHhh
Confidence 577999999999999999999999999987666533 2578999999987533 233444443
No 29
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.63 E-value=0.0098 Score=43.00 Aligned_cols=75 Identities=25% Similarity=0.373 Sum_probs=57.4
Q ss_pred HHHHHhh-cCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhhhhhHHHHHH
Q psy11027 40 NDIMMLL-TSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFK 118 (252)
Q Consensus 40 ~~V~~lL-~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~~l~p~l~~ 118 (252)
+.+.+.+ +++++++|..|+.++.++- .| ...+.+.++++|+|+.|...|+..+..+-. ....|.+.+
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~--~~----~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~------~~~~~~L~~ 69 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG--DP----EAIPALIELLKDEDPMVRRAAARALGRIGD------PEAIPALIK 69 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT--HH----HHHHHHHHHHTSSSHHHHHHHHHHHHCCHH------HHTHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC--CH----hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------HHHHHHHHH
Confidence 4566777 8899999999999998332 11 457889999999999999999999987742 246778888
Q ss_pred HhhcCCCh
Q psy11027 119 LMTTSSNN 126 (252)
Q Consensus 119 lL~~~~~p 126 (252)
++.+..++
T Consensus 70 ~l~~~~~~ 77 (88)
T PF13646_consen 70 LLQDDDDE 77 (88)
T ss_dssp HHTC-SSH
T ss_pred HHcCCCcH
Confidence 88765443
No 30
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.37 E-value=0.13 Score=52.23 Aligned_cols=118 Identities=17% Similarity=0.233 Sum_probs=95.7
Q ss_pred HHHHh-cccCCHHHHHHHHHHh-hcCC-chHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhh
Q psy11027 6 MIRKD-LNAQNQYDAGLALSAL-ACFT-STDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEK 82 (252)
Q Consensus 6 ~i~kD-L~s~n~~~~~LAL~~l-a~i~-~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~l 82 (252)
..+.. +.|+|.+.+-=|++.+ +.+. +.+ ...++++|.|.+.+.+.-+||--++=+.+.=+..|+......+.+.+.
T Consensus 22 ~~~sg~l~s~n~~~kidAmK~iIa~M~~G~d-mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kD 100 (757)
T COG5096 22 ALSSGRLESSNDYKKIDAMKKIIAQMSLGED-MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKD 100 (757)
T ss_pred hhccccccccChHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Confidence 34555 8899999999998877 6655 555 555999999999999999999999999888888998888889999999
Q ss_pred hCCCChhHHHHHHHHHHHHHhhCchhhhhhHHHHHHHhhcCCChh
Q psy11027 83 LEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNW 127 (252)
Q Consensus 83 L~d~d~~V~~~al~ll~ei~~~~p~~~~~l~p~l~~lL~~~~~pw 127 (252)
|.|+|+.+.+.|+-.+..+- .++.+..+.+.+.+.+++ ++|.
T Consensus 101 l~d~N~~iR~~AlR~ls~l~--~~el~~~~~~~ik~~l~d-~~ay 142 (757)
T COG5096 101 LQDPNEEIRGFALRTLSLLR--VKELLGNIIDPIKKLLTD-PHAY 142 (757)
T ss_pred ccCCCHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHccC-CcHH
Confidence 99999999999999888774 356666677777777765 3444
No 31
>KOG0414|consensus
Probab=96.37 E-value=0.007 Score=62.97 Aligned_cols=90 Identities=20% Similarity=0.295 Sum_probs=59.3
Q ss_pred ccCCHHHHHHHHHHhhcCC--chHhHHHHHHHHHHhhc-CCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhCCCCh
Q psy11027 12 NAQNQYDAGLALSALACFT--STDLARDLANDIMMLLT-STKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDS 88 (252)
Q Consensus 12 ~s~n~~~~~LAL~~la~i~--~~el~~~l~~~V~~lL~-s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~d~d~ 88 (252)
..+||..+..|-=+++.+. +.++|+.=.+-....|. +++|.||--++.|+.=+--.+|.+++++++.+...|.|.++
T Consensus 933 ~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~T~~Ly~rL~D~~~ 1012 (1251)
T KOG0414|consen 933 LFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPWTEHLYRRLRDESP 1012 (1251)
T ss_pred cCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccchhhHHHHHHhcCccH
Confidence 4455666655555555543 56666666666666665 66777777777777776667777777777777777777777
Q ss_pred hHHHHHHHHHHHH
Q psy11027 89 GVQSAAVNVVCEL 101 (252)
Q Consensus 89 ~V~~~al~ll~ei 101 (252)
.|.-+|+-++..+
T Consensus 1013 ~vRkta~lvlshL 1025 (1251)
T KOG0414|consen 1013 SVRKTALLVLSHL 1025 (1251)
T ss_pred HHHHHHHHHHHHH
Confidence 7777776666554
No 32
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.32 E-value=0.039 Score=47.37 Aligned_cols=101 Identities=15% Similarity=0.109 Sum_probs=70.8
Q ss_pred HHHHHhcccCCHHHHHHHHHHhhcCC------chHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCch-hH
Q psy11027 5 NMIRKDLNAQNQYDAGLALSALACFT------STDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPA-FP 77 (252)
Q Consensus 5 N~i~kDL~s~n~~~~~LAL~~la~i~------~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~-~~ 77 (252)
..+.+.++|.+-.+...|+.+++.+. ....++.+.+.+.+.+.+++..+|..|..|+..+++..+ ..... .+
T Consensus 56 ~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-~~~~~~~~ 134 (228)
T PF12348_consen 56 DAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS-YSPKILLE 134 (228)
T ss_dssp HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS--H--HHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-cHHHHHHH
Confidence 35567777888888888888876543 344567789999999999999999999999999999887 22334 67
Q ss_pred HHHhhhCCCChhHHHHHHHHHHHHHhhCc
Q psy11027 78 RLKEKLEDPDSGVQSAAVNVVCELARKNP 106 (252)
Q Consensus 78 ~l~~lL~d~d~~V~~~al~ll~ei~~~~p 106 (252)
.+.....++++.+...++..+..+....+
T Consensus 135 ~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 135 ILSQGLKSKNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp HHHHHTT-S-HHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence 78888899999999999999999988776
No 33
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.18 E-value=0.041 Score=53.99 Aligned_cols=76 Identities=18% Similarity=0.185 Sum_probs=60.6
Q ss_pred CcchHHHHHhcccCCH-HHHHHHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchh
Q psy11027 1 MLTTNMIRKDLNAQNQ-YDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAF 76 (252)
Q Consensus 1 ~L~~N~i~kDL~s~n~-~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~ 76 (252)
+|.||+|-||++...| .++..|++++-.+-..+++.+.-.-+....-++++.+|-.|...+++++-.+-+....|.
T Consensus 100 lm~tssiMkD~~~g~~~~~kp~AiRsL~~Vid~~tv~~~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ 176 (898)
T COG5240 100 LMGTSSIMKDLNGGVPDDVKPMAIRSLFSVIDGETVYDFERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWL 176 (898)
T ss_pred hHHHHHHHHhhccCCccccccHHHHHHHHhcCcchhhhHHHHhhhhccccchhhhhhHHHHhhhhccccHHHHHHHH
Confidence 5789999999999888 899999999999988888887777777777788888888888878777654444444443
No 34
>KOG1020|consensus
Probab=96.11 E-value=0.051 Score=58.10 Aligned_cols=123 Identities=14% Similarity=0.265 Sum_probs=102.1
Q ss_pred HHHHHhcccCCHHHHHHHHHHhhcCCchH--h-H-HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHH
Q psy11027 5 NMIRKDLNAQNQYDAGLALSALACFTSTD--L-A-RDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLK 80 (252)
Q Consensus 5 N~i~kDL~s~n~~~~~LAL~~la~i~~~e--l-~-~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~ 80 (252)
+.|..-+..+-+.+|+=||+|++.|...| + + +++...|..-+.+++..||-.|+--+.|+.-.+||++..++..+.
T Consensus 819 k~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qyY~~i~ 898 (1692)
T KOG1020|consen 819 KLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQYYDQII 898 (1692)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHHHHHHH
Confidence 34555677888999999999999988532 2 2 257778888889999999999999999999999999999999999
Q ss_pred hhhCCCChhHHHHHHHHHHHHHhhCchhhhhhHHHHHHHhhcCCChhH
Q psy11027 81 EKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWM 128 (252)
Q Consensus 81 ~lL~d~d~~V~~~al~ll~ei~~~~p~~~~~l~p~l~~lL~~~~~pwl 128 (252)
+...|+...|.--++--+.++|...|+ |...+-...+++.++.|+=.
T Consensus 899 erIlDtgvsVRKRvIKIlrdic~e~pd-f~~i~~~cakmlrRv~DEEg 945 (1692)
T KOG1020|consen 899 ERILDTGVSVRKRVIKILRDICEETPD-FSKIVDMCAKMLRRVNDEEG 945 (1692)
T ss_pred hhcCCCchhHHHHHHHHHHHHHHhCCC-hhhHHHHHHHHHHHhccchh
Confidence 999999999999999999999999887 33344455567776666655
No 35
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.10 E-value=0.043 Score=47.10 Aligned_cols=105 Identities=19% Similarity=0.221 Sum_probs=72.5
Q ss_pred hHHHHHhcccCCHHHHHHHHHHhhcCCc-hHhHHHH-HHHHHHhhcCCChHHHHHHHHHHHHHHhhCC---CCcC-----
Q psy11027 4 TNMIRKDLNAQNQYDAGLALSALACFTS-TDLARDL-ANDIMMLLTSTKPYLRKKAVLMMYKVFLKFP---DALR----- 73 (252)
Q Consensus 4 ~N~i~kDL~s~n~~~~~LAL~~la~i~~-~el~~~l-~~~V~~lL~s~~p~VRKkA~lal~ki~~~~P---d~l~----- 73 (252)
.+.+.+=+.+++..++.-|-.++-.+.. -.+...+ ...+...+.|.+|.+|..++.++..++...| +.+.
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~ 175 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFL 175 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHH
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchH
Confidence 3455666788899999888888765542 2233344 7777788899999999999999999999998 3333
Q ss_pred -chhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchh
Q psy11027 74 -PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKN 108 (252)
Q Consensus 74 -~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~ 108 (252)
...+.+.+.++|+++.|..+|-.++..+.+..|+.
T Consensus 176 ~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 176 KQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 24578889999999999999999999998776653
No 36
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=96.07 E-value=0.028 Score=47.56 Aligned_cols=116 Identities=18% Similarity=0.177 Sum_probs=83.4
Q ss_pred HHHHhcccCCHHHHHHHHHHhhcCCchHhHH--HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCc-hhH-----
Q psy11027 6 MIRKDLNAQNQYDAGLALSALACFTSTDLAR--DLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRP-AFP----- 77 (252)
Q Consensus 6 ~i~kDL~s~n~~~~~LAL~~la~i~~~el~~--~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~-~~~----- 77 (252)
.|-+-+.+++..++-.|++.++.+-...++. ...|.+..+.+|+++++|++|.-.+..++.++|+.+.. +.+
T Consensus 12 ~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~~~gi~~a 91 (187)
T PF12830_consen 12 NILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRYSEGIRLA 91 (187)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3455667899999999999998766555544 36788899999999999999999999999999998763 111
Q ss_pred -HHHhhh-CCCChhH---HHHHHHHHHHHHhhCchhhhhhHHHHHHHhh
Q psy11027 78 -RLKEKL-EDPDSGV---QSAAVNVVCELARKNPKNYLSLAPVFFKLMT 121 (252)
Q Consensus 78 -~l~~lL-~d~d~~V---~~~al~ll~ei~~~~p~~~~~l~p~l~~lL~ 121 (252)
...+.+ .|...+. ..+.+..++++++.+.+.-+++...+++.+.
T Consensus 92 f~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl~~l~k~f~ 140 (187)
T PF12830_consen 92 FDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFLKSLLKQFD 140 (187)
T ss_pred HHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 122223 3333333 6778888888888555444556666666554
No 37
>KOG1060|consensus
Probab=95.94 E-value=0.034 Score=56.08 Aligned_cols=96 Identities=14% Similarity=0.179 Sum_probs=83.7
Q ss_pred HHHhcccCCHHHHHHHHHHh-hcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhCC
Q psy11027 7 IRKDLNAQNQYDAGLALSAL-ACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLED 85 (252)
Q Consensus 7 i~kDL~s~n~~~~~LAL~~l-a~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~d 85 (252)
++.=|.|.+.-...=|++.| +-|+.-+=+..++++|.|...+.++-|||-.++=+.|.-...||+.-..++.+.+-|.|
T Consensus 40 L~~lLdSnkd~~KleAmKRIia~iA~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~L~D 119 (968)
T KOG1060|consen 40 LKQLLDSNKDSLKLEAMKRIIALIAKGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKALKD 119 (968)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhhhcC
Confidence 44556777888888888877 55664444777999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHH
Q psy11027 86 PDSGVQSAAVNVVCELA 102 (252)
Q Consensus 86 ~d~~V~~~al~ll~ei~ 102 (252)
+|+-+.+.|+.++..|-
T Consensus 120 pN~LiRasALRvlSsIR 136 (968)
T KOG1060|consen 120 PNQLIRASALRVLSSIR 136 (968)
T ss_pred CcHHHHHHHHHHHHhcc
Confidence 99999999999998874
No 38
>KOG2023|consensus
Probab=95.88 E-value=0.15 Score=50.92 Aligned_cols=111 Identities=17% Similarity=0.137 Sum_probs=82.0
Q ss_pred HHHHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCc----CchhHHHHhhhCCCChhHHHHH
Q psy11027 19 AGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDAL----RPAFPRLKEKLEDPDSGVQSAA 94 (252)
Q Consensus 19 ~~LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l----~~~~~~l~~lL~d~d~~V~~~a 94 (252)
.+.||..++|+-..|+-+.+.|.+.+.|+|..-.+|-.+++|+.-+-.-+-+-+ +..+|.+.++|+|+.|-|.+-+
T Consensus 375 SAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsIT 454 (885)
T KOG2023|consen 375 SAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSIT 454 (885)
T ss_pred cHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeee
Confidence 367899999999999999999999999999999999999999998877655433 3467899999999999998887
Q ss_pred HHHHHHHHh----hCc-hhhhhhHHHHHHHhhcCCChhHHH
Q psy11027 95 VNVVCELAR----KNP-KNYLSLAPVFFKLMTTSSNNWMLI 130 (252)
Q Consensus 95 l~ll~ei~~----~~p-~~~~~l~p~l~~lL~~~~~pwlqi 130 (252)
+=.+...++ ..+ +.|.++...+.+.+-.+ +-|.|-
T Consensus 455 CWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~-NK~VQE 494 (885)
T KOG2023|consen 455 CWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDS-NKKVQE 494 (885)
T ss_pred eeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcc-cHHHHH
Confidence 666655443 233 23444433333332221 556655
No 39
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=95.76 E-value=0.022 Score=55.95 Aligned_cols=95 Identities=20% Similarity=0.214 Sum_probs=56.1
Q ss_pred cCCHHHHHHHHHHhhcCC--chHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhCCCChhH
Q psy11027 13 AQNQYDAGLALSALACFT--STDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGV 90 (252)
Q Consensus 13 s~n~~~~~LAL~~la~i~--~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~d~d~~V 90 (252)
..++-..-||=++|+.+- .|++.+.-++....++.+.+..||+.|+-.+..+.+.+||.+....+-|.++|...|+..
T Consensus 33 kg~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E 112 (556)
T PF05918_consen 33 KGSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDPVE 112 (556)
T ss_dssp GS-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---HHH
T ss_pred cCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccHHH
Confidence 345666666666666644 477777777777777777667777777777777777677766666666777776666666
Q ss_pred HHHHHHHHHHHHhhCch
Q psy11027 91 QSAAVNVVCELARKNPK 107 (252)
Q Consensus 91 ~~~al~ll~ei~~~~p~ 107 (252)
+..+=..+.++.+.+|+
T Consensus 113 ~~~v~~sL~~ll~~d~k 129 (556)
T PF05918_consen 113 LDAVKNSLMSLLKQDPK 129 (556)
T ss_dssp HHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHhcCcH
Confidence 66666666666666665
No 40
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=95.74 E-value=0.045 Score=56.94 Aligned_cols=110 Identities=22% Similarity=0.171 Sum_probs=82.2
Q ss_pred HHHHhcccCCHHHHHHHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhCC
Q psy11027 6 MIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLED 85 (252)
Q Consensus 6 ~i~kDL~s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~d 85 (252)
.+.+=++++++.++..|+.+|+.++.++ .+...+...+.++++.||+.|+-++.++- . +..++.|.++|+|
T Consensus 779 ~L~~ll~D~d~~VR~aA~~aLg~~g~~~---~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~--~----~~a~~~L~~~L~D 849 (897)
T PRK13800 779 AVRALTGDPDPLVRAAALAALAELGCPP---DDVAAATAALRASAWQVRQGAARALAGAA--A----DVAVPALVEALTD 849 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCCcc---hhHHHHHHHhcCCChHHHHHHHHHHHhcc--c----cchHHHHHHHhcC
Confidence 4555578899999999999999999763 22345788899999999999999997542 1 2346889999999
Q ss_pred CChhHHHHHHHHHHHHHhhCchhhhhhHHHHHHHhhcCCChhHHH
Q psy11027 86 PDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLI 130 (252)
Q Consensus 86 ~d~~V~~~al~ll~ei~~~~p~~~~~l~p~l~~lL~~~~~pwlqi 130 (252)
+|+.|...|+..|-.+ ...|+ ..+.+.+.|+.. ++..+.
T Consensus 850 ~~~~VR~~A~~aL~~~-~~~~~----a~~~L~~al~D~-d~~Vr~ 888 (897)
T PRK13800 850 PHLDVRKAAVLALTRW-PGDPA----ARDALTTALTDS-DADVRA 888 (897)
T ss_pred CCHHHHHHHHHHHhcc-CCCHH----HHHHHHHHHhCC-CHHHHH
Confidence 9999999999999886 22232 345555666643 665544
No 41
>KOG0414|consensus
Probab=95.73 E-value=0.067 Score=56.00 Aligned_cols=108 Identities=19% Similarity=0.252 Sum_probs=58.0
Q ss_pred cCCHHHHHHHHHHhhcCC--chHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhCCCChhH
Q psy11027 13 AQNQYDAGLALSALACFT--STDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGV 90 (252)
Q Consensus 13 s~n~~~~~LAL~~la~i~--~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~d~d~~V 90 (252)
+++|.++|-+.-++|.+. -|.+++...++..+-+.+.++.|||.|.+.+.+++.++-=-+..........|.|+++++
T Consensus 972 sp~p~IRsN~VvalgDlav~fpnlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~eMA~cl~D~~~~I 1051 (1251)
T KOG0414|consen 972 SPSPRIRSNLVVALGDLAVRFPNLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSEMALCLEDPNAEI 1051 (1251)
T ss_pred CCCceeeecchheccchhhhcccccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHHHHHHhcCCcHHH
Confidence 555555555555555533 455555555556655555566666666666655555544333444555555555666665
Q ss_pred HHHHHHHHHHHHhhCchhhhhhHHHHHHHhh
Q psy11027 91 QSAAVNVVCELARKNPKNYLSLAPVFFKLMT 121 (252)
Q Consensus 91 ~~~al~ll~ei~~~~p~~~~~l~p~l~~lL~ 121 (252)
..-|=+++.|+..+. +..-.+.|.++..|+
T Consensus 1052 sdlAk~FF~Els~k~-n~iynlLPdil~~Ls 1081 (1251)
T KOG0414|consen 1052 SDLAKSFFKELSSKG-NTIYNLLPDILSRLS 1081 (1251)
T ss_pred HHHHHHHHHHhhhcc-cchhhhchHHHHhhc
Confidence 555555555555443 222245555554443
No 42
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.65 E-value=0.058 Score=35.86 Aligned_cols=49 Identities=18% Similarity=0.166 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhhcCC--chHh----HHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q psy11027 16 QYDAGLALSALACFT--STDL----ARDLANDIMMLLTSTKPYLRKKAVLMMYKV 64 (252)
Q Consensus 16 ~~~~~LAL~~la~i~--~~el----~~~l~~~V~~lL~s~~p~VRKkA~lal~ki 64 (252)
|.++.-|+.++|++. .++. .+.+.+.+.++|.++++.||..|+-|+.++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 457788888888765 2333 346777777888888889999999888653
No 43
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=95.64 E-value=0.095 Score=39.43 Aligned_cols=71 Identities=18% Similarity=0.278 Sum_probs=58.9
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCC-CCcC--chhHHHHhhhCCCChhHHHHHHHHHHHHHhhCch
Q psy11027 37 DLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFP-DALR--PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK 107 (252)
Q Consensus 37 ~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~P-d~l~--~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~ 107 (252)
.....+.+.+.++.+.||=-|..-+.++++... .... ....-+.+.|.|+|+.|=.+|+..+..++...|+
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 345677788889999999999999999998777 3322 3457788889999999999999999999998886
No 44
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.54 E-value=0.034 Score=32.96 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=23.0
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHhh
Q psy11027 38 LANDIMMLLTSTKPYLRKKAVLMMYKVFLK 67 (252)
Q Consensus 38 l~~~V~~lL~s~~p~VRKkA~lal~ki~~~ 67 (252)
+.|.+.++++|+++.||+.|+.|+..+.+.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 356778888888888888888888887653
No 45
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=95.21 E-value=0.25 Score=43.95 Aligned_cols=132 Identities=19% Similarity=0.305 Sum_probs=84.6
Q ss_pred HHHHHhhcC-CChHHHHHHHHHHHHH--HhhCCCCcCc--hhHHHHhhhCCCChhHHHHHHHHHHHHHhhCc--hhhhhh
Q psy11027 40 NDIMMLLTS-TKPYLRKKAVLMMYKV--FLKFPDALRP--AFPRLKEKLEDPDSGVQSAAVNVVCELARKNP--KNYLSL 112 (252)
Q Consensus 40 ~~V~~lL~s-~~p~VRKkA~lal~ki--~~~~Pd~l~~--~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p--~~~~~l 112 (252)
..+..+|.. .+|+++++|..++... |..+.+.+.+ .++.+.++|+++++.|.-.|+..+..++...+ ...+..
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~ 94 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMY 94 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHH
Confidence 556677765 6899999999888774 2233345543 57999999999999999999999988765432 244556
Q ss_pred HHHHHHHhhc-CCChhHHHHHhhccccchhhhhhhhhhcccCccchhchhhHHHHHhcCCCcchhHHH
Q psy11027 113 APVFFKLMTT-SSNNWMLIKIIKLRLQGVFAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIK 179 (252)
Q Consensus 113 ~p~l~~lL~~-~~~pwlqikiLklrL~~v~a~~v~~e~~~~n~~~~l~l~~~l~~lL~~~~nN~~~i~ 179 (252)
++++.+...+ ..+-.+|..-||+ ++...+..+..+-..+|+ +.+..+|.+++.+++.=+
T Consensus 95 i~~Vc~~~~s~~lns~~Q~agLrl-----L~nLtv~~~~~~~l~~~i---~~ll~LL~~G~~~~k~~v 154 (254)
T PF04826_consen 95 IPQVCEETVSSPLNSEVQLAGLRL-----LTNLTVTNDYHHMLANYI---PDLLSLLSSGSEKTKVQV 154 (254)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHH-----HHccCCCcchhhhHHhhH---HHHHHHHHcCChHHHHHH
Confidence 7777765443 2355688877776 111111111112222243 667777777777776443
No 46
>KOG2171|consensus
Probab=95.18 E-value=0.19 Score=52.56 Aligned_cols=120 Identities=18% Similarity=0.257 Sum_probs=88.8
Q ss_pred hHHHHHhcccCCHHHHHHHHHHhhcCCc---hHhHHH----HHHHHHHhhcC-CChHHHHHHHHHHHHHHhhCC-CCcCc
Q psy11027 4 TNMIRKDLNAQNQYDAGLALSALACFTS---TDLARD----LANDIMMLLTS-TKPYLRKKAVLMMYKVFLKFP-DALRP 74 (252)
Q Consensus 4 ~N~i~kDL~s~n~~~~~LAL~~la~i~~---~el~~~----l~~~V~~lL~s-~~p~VRKkA~lal~ki~~~~P-d~l~~ 74 (252)
.+.+-+-|++++|-||-.|++++|.+.+ |++... +.+.+...+.+ .++.|..-|+.|+.-++..+| +.+.+
T Consensus 391 l~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~p 470 (1075)
T KOG2171|consen 391 LPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEP 470 (1075)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 4667788999999999999999999984 666443 33445555555 588999999999999998887 44544
Q ss_pred h----hH-HHHhhhCCCChhHHHHHHHHHHHHHhhCch----hhhhhHHHHHHHhhcC
Q psy11027 75 A----FP-RLKEKLEDPDSGVQSAAVNVVCELARKNPK----NYLSLAPVFFKLMTTS 123 (252)
Q Consensus 75 ~----~~-~l~~lL~d~d~~V~~~al~ll~ei~~~~p~----~~~~l~p~l~~lL~~~ 123 (252)
+ .+ ++.-++..+.+.|.-.+++.+-+++..-.+ .|..+.|.+.+.|.+.
T Consensus 471 YLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~ 528 (1075)
T KOG2171|consen 471 YLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNA 528 (1075)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCC
Confidence 3 33 455566678899999999999988875444 3455667777777653
No 47
>KOG1078|consensus
Probab=94.80 E-value=0.33 Score=49.12 Aligned_cols=174 Identities=18% Similarity=0.241 Sum_probs=100.0
Q ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhCCCChhHHHHHHH
Q psy11027 17 YDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVN 96 (252)
Q Consensus 17 ~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~d~d~~V~~~al~ 96 (252)
+..|.|.+.+.+....++++ -.....-+++++++.+|=+|...+.++--++|..+.-.-..+.++.+|.|-++.+-|++
T Consensus 263 ~EaArai~~l~~~~~r~l~p-avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIat~AIT 341 (865)
T KOG1078|consen 263 YEAARAIVSLPNTNSRELAP-AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIATLAIT 341 (865)
T ss_pred HHHHHHHhhccccCHhhcch-HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccchhHHHHH
Confidence 44566666667666666666 33444455566777777777777777777777776665566677777777777666666
Q ss_pred HHHHHHhhCchhhhhhHHHHHHHhhcCCChhHHHHHhhccccchhhhhhhhhhcccCccchhchhhHHHHHhcCCCcchh
Q psy11027 97 VVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLRLQGVFAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWM 176 (252)
Q Consensus 97 ll~ei~~~~p~~~~~l~p~l~~lL~~~~~pwlqikiLklrL~~v~a~~v~~e~~~~n~~~~l~l~~~l~~lL~~~~nN~~ 176 (252)
.+..--. .+....+..+....++..+|+|..+ .+..+...+.+-|+-+.++.+-+..+|.+ +.-+.
T Consensus 342 tLLKTG~--e~sv~rLm~qI~~fv~disDeFKiv-----------vvdai~sLc~~fp~k~~~~m~FL~~~Lr~-eGg~e 407 (865)
T KOG1078|consen 342 TLLKTGT--ESSVDRLMKQISSFVSDISDEFKIV-----------VVDAIRSLCLKFPRKHTVMMNFLSNMLRE-EGGFE 407 (865)
T ss_pred HHHHhcc--hhHHHHHHHHHHHHHHhccccceEE-----------eHHHHHHHHhhccHHHHHHHHHHHHHHHh-ccCch
Confidence 5544322 1122233333333444444555433 12223333444444455666777788876 67777
Q ss_pred HHH-----HHHHh--hHHHHHHHHHHHHHHHhhccChhH
Q psy11027 177 LIK-----IIKLV--LYAVLYAAAWICGEFREHLDSPRA 208 (252)
Q Consensus 177 ~i~-----likl~--~~e~l~~~~~iv~~~~~~l~~~~~ 208 (252)
|.+ ++... .+|.-++ .-..+|+|+.+.+.
T Consensus 408 ~K~aivd~Ii~iie~~pdsKe~---~L~~LCefIEDce~ 443 (865)
T KOG1078|consen 408 FKRAIVDAIIDIIEENPDSKER---GLEHLCEFIEDCEF 443 (865)
T ss_pred HHHHHHHHHHHHHHhCcchhhH---HHHHHHHHHHhccc
Confidence 766 22222 3444444 66677888777753
No 48
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=94.70 E-value=0.016 Score=38.61 Aligned_cols=50 Identities=26% Similarity=0.379 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHHhhCCCCcC----chhHHHHhhhCCCChhHHHHHHHHHHH
Q psy11027 51 PYLRKKAVLMMYKVFLKFPDALR----PAFPRLKEKLEDPDSGVQSAAVNVVCE 100 (252)
Q Consensus 51 p~VRKkA~lal~ki~~~~Pd~l~----~~~~~l~~lL~d~d~~V~~~al~ll~e 100 (252)
|.||+.|+.|+..+-...|+... ...+.+.++|+|+++.|..+|+..+-.
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 67999999999987766666554 456888899999999999999877643
No 49
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=94.66 E-value=0.089 Score=51.72 Aligned_cols=83 Identities=23% Similarity=0.331 Sum_probs=66.5
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhhhhhHHHHH
Q psy11027 38 LANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFF 117 (252)
Q Consensus 38 l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~~l~p~l~ 117 (252)
-+..|+.... +++-.|+-|+-=+.|+|+..|++.+.+++.+.++.+|.|..|...|+--+..+|+.+|+....++..++
T Consensus 24 ~y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~ 102 (556)
T PF05918_consen 24 DYKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLV 102 (556)
T ss_dssp HHHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHH
T ss_pred HHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHH
Confidence 4555666665 468899999999999999999999999999999999999999999999999999999988888888877
Q ss_pred HHhh
Q psy11027 118 KLMT 121 (252)
Q Consensus 118 ~lL~ 121 (252)
++|.
T Consensus 103 QlL~ 106 (556)
T PF05918_consen 103 QLLQ 106 (556)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 7775
No 50
>KOG0166|consensus
Probab=94.37 E-value=2.2 Score=41.72 Aligned_cols=107 Identities=23% Similarity=0.305 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhhcCCc---hHhHHH-HHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcC-----chhHHHHhhhCCC
Q psy11027 16 QYDAGLALSALACFTS---TDLARD-LANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDP 86 (252)
Q Consensus 16 ~~~~~LAL~~la~i~~---~el~~~-l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~-----~~~~~l~~lL~d~ 86 (252)
++..+-||+-||+..+ .-.+++ ..+...+++.|+++.||-.|+-|+..+-...|+.=. ...+.+..++..+
T Consensus 127 q~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~ 206 (514)
T KOG0166|consen 127 QFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKS 206 (514)
T ss_pred HHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccc
Confidence 6677888888877553 333333 445568999999999999999999999988876422 3457777778766
Q ss_pred Ch-hHHHHHHHHHHHHHhhC-ch----hhhhhHHHHHHHhhc
Q psy11027 87 DS-GVQSAAVNVVCELARKN-PK----NYLSLAPVFFKLMTT 122 (252)
Q Consensus 87 d~-~V~~~al~ll~ei~~~~-p~----~~~~l~p~l~~lL~~ 122 (252)
+. ...-.+.-++.-+|+.. |. ....+.|.+.+++.+
T Consensus 207 ~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~ 248 (514)
T KOG0166|consen 207 DKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHS 248 (514)
T ss_pred cchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhc
Confidence 65 66667777888888753 53 345667777776654
No 51
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.26 E-value=0.42 Score=48.14 Aligned_cols=102 Identities=21% Similarity=0.269 Sum_probs=82.9
Q ss_pred HHHHHhcccCCHHHHHHHHHHhhcCC-----chHhHH-------HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCc
Q psy11027 5 NMIRKDLNAQNQYDAGLALSALACFT-----STDLAR-------DLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDAL 72 (252)
Q Consensus 5 N~i~kDL~s~n~~~~~LAL~~la~i~-----~~el~~-------~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l 72 (252)
|.+.+=|.|.....+|.-+...||+. .++|.+ ++..-+.+-+++++||+|-||.-.+.++|....-..
T Consensus 302 ~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~ 381 (1128)
T COG5098 302 EHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTV 381 (1128)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccccc
Confidence 34556677888889999999888854 456766 456666677789999999999999999998776555
Q ss_pred C---chhHHHHhhhCCCChhHHHHHHHHHHHHHhhCc
Q psy11027 73 R---PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNP 106 (252)
Q Consensus 73 ~---~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p 106 (252)
. .++......|.|+...|.-.|+.++..+..++|
T Consensus 382 ~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 382 GRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred chHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 4 356777788999999999999999999998887
No 52
>KOG2023|consensus
Probab=94.13 E-value=0.82 Score=45.85 Aligned_cols=113 Identities=19% Similarity=0.197 Sum_probs=84.0
Q ss_pred HHHHhcccCCHHHHHHHHHHhhcCC---chHhHH---HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCc----h
Q psy11027 6 MIRKDLNAQNQYDAGLALSALACFT---STDLAR---DLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRP----A 75 (252)
Q Consensus 6 ~i~kDL~s~n~~~~~LAL~~la~i~---~~el~~---~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~----~ 75 (252)
.+-+-.++++|-+|+.|+.|+-.+- +..+-- .....+..+-++.+|-|||..+.++..+....||-+.+ .
T Consensus 178 kfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~I 257 (885)
T KOG2023|consen 178 KFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNI 257 (885)
T ss_pred HHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHH
Confidence 4556678999999999999997743 443322 34555666667899999999999999999999997653 3
Q ss_pred hHHHHhhhCCCChhHHHHHHHHHHHHHhhC-ch-h----hhhhHHHHHH
Q psy11027 76 FPRLKEKLEDPDSGVQSAAVNVVCELARKN-PK-N----YLSLAPVFFK 118 (252)
Q Consensus 76 ~~~l~~lL~d~d~~V~~~al~ll~ei~~~~-p~-~----~~~l~p~l~~ 118 (252)
++.+.+.-.|.|.+|..-|+-....++... |+ . ..+++|.+++
T Consensus 258 veyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~ 306 (885)
T KOG2023|consen 258 VEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLS 306 (885)
T ss_pred HHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHc
Confidence 466666677999999999999999988753 22 2 2345565554
No 53
>KOG1824|consensus
Probab=94.10 E-value=0.15 Score=52.61 Aligned_cols=115 Identities=19% Similarity=0.255 Sum_probs=95.2
Q ss_pred HHHHhcccCCHHHHHHHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCc----hhHHHHh
Q psy11027 6 MIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRP----AFPRLKE 81 (252)
Q Consensus 6 ~i~kDL~s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~----~~~~l~~ 81 (252)
.+-|++.+..+..|++.--|+|.+..-|= +.+.+.....+.|+.++.|-.++-|.--.+...|.-+.. .+..+.+
T Consensus 936 lL~k~cE~~eegtR~vvAECLGkL~l~ep-esLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~ 1014 (1233)
T KOG1824|consen 936 LLFKHCECAEEGTRNVVAECLGKLVLIEP-ESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLK 1014 (1233)
T ss_pred HHHHhcccchhhhHHHHHHHhhhHHhCCh-HHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHH
Confidence 35577778888888888888887664331 358899999999999999999999887777788887764 4568888
Q ss_pred hhCCCChhHHHHHHHHHHHHHhhCchhhhhhHHHHHHHhh
Q psy11027 82 KLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMT 121 (252)
Q Consensus 82 lL~d~d~~V~~~al~ll~ei~~~~p~~~~~l~p~l~~lL~ 121 (252)
++.|+|+.|.-.|+.++...+...|...+++.|.+...|.
T Consensus 1015 ~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly 1054 (1233)
T KOG1824|consen 1015 LLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLY 1054 (1233)
T ss_pred HHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHH
Confidence 8899999999999999999999889999999998887664
No 54
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=93.78 E-value=1 Score=37.19 Aligned_cols=113 Identities=19% Similarity=0.289 Sum_probs=79.7
Q ss_pred HHHHhcccCCHHHHHHHHHHhhcCC---chHhH-H---HHHHHHHHhhcC-CChHHHHHHHHHHHHHHh---hCCCCcCc
Q psy11027 6 MIRKDLNAQNQYDAGLALSALACFT---STDLA-R---DLANDIMMLLTS-TKPYLRKKAVLMMYKVFL---KFPDALRP 74 (252)
Q Consensus 6 ~i~kDL~s~n~~~~~LAL~~la~i~---~~el~-~---~l~~~V~~lL~s-~~p~VRKkA~lal~ki~~---~~Pd~l~~ 74 (252)
.+.+=|+|++++.+=.+++.+.-+. +.|.. + .....+.+.+.. ..+.+++.|+.++.++|. ..|++.++
T Consensus 29 ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Re 108 (165)
T PF08167_consen 29 RINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTRE 108 (165)
T ss_pred HHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHH
Confidence 4555577888888877777664433 34554 3 466667777766 567889999999999985 56777654
Q ss_pred h-hH-------HHHhhhCCCChhHHHHHHHHHHHHHhhCchhhhhhHHHHHHHh
Q psy11027 75 A-FP-------RLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM 120 (252)
Q Consensus 75 ~-~~-------~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~~l~p~l~~lL 120 (252)
. +| .+.+++++ ..+...++.++..+.+.+|..|+++..++-..+
T Consensus 109 i~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l 160 (165)
T PF08167_consen 109 IATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESAL 160 (165)
T ss_pred HhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHH
Confidence 2 23 33333333 788889999999999999999988887766544
No 55
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=93.59 E-value=0.35 Score=43.92 Aligned_cols=77 Identities=21% Similarity=0.167 Sum_probs=43.4
Q ss_pred HHHHHhcccCCHHHHHHHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhC
Q psy11027 5 NMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLE 84 (252)
Q Consensus 5 N~i~kDL~s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~ 84 (252)
..+.+-+.+.++.++..|..++++++.++-.+.+...+.. +.+.+||..|+.++.++-.... +..+.+.++
T Consensus 77 ~~l~~~l~d~~~~vr~~a~~aLg~~~~~~a~~~li~~l~~---d~~~~vR~~aa~aL~~~~~~~a------~~~l~~~l~ 147 (335)
T COG1413 77 PLLRELLSDEDPRVRDAAADALGELGDPEAVPPLVELLEN---DENEGVRAAAARALGKLGDERA------LDPLLEALQ 147 (335)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHccCChhHHHHHHHHHHc---CCcHhHHHHHHHHHHhcCchhh------hHHHHHHhc
Confidence 3455556666666666666666666666655544433333 5666666666666665543222 444555555
Q ss_pred CCChhH
Q psy11027 85 DPDSGV 90 (252)
Q Consensus 85 d~d~~V 90 (252)
|.++++
T Consensus 148 ~~~~~~ 153 (335)
T COG1413 148 DEDSGS 153 (335)
T ss_pred cchhhh
Confidence 555444
No 56
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=93.53 E-value=3.2 Score=46.89 Aligned_cols=113 Identities=19% Similarity=0.191 Sum_probs=77.5
Q ss_pred cccCCHHHHHHHHHHhhcCCc----hHhH------HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcC-----ch
Q psy11027 11 LNAQNQYDAGLALSALACFTS----TDLA------RDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PA 75 (252)
Q Consensus 11 L~s~n~~~~~LAL~~la~i~~----~el~------~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~-----~~ 75 (252)
|.+.++..+.-+++.++++.+ .|+. ..-.+.+.+++.|+++.+||.|+-++..++...++... ..
T Consensus 573 Llsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~aga 652 (2102)
T PLN03200 573 LLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEI 652 (2102)
T ss_pred hcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCC
Confidence 455666666667777766532 2211 12567788888888889999999888888887777432 46
Q ss_pred hHHHHhhhCCCChhHHHHHHHHHHHHHhhCc-hh--h---hhhHHHHHHHhhcC
Q psy11027 76 FPRLKEKLEDPDSGVQSAAVNVVCELARKNP-KN--Y---LSLAPVFFKLMTTS 123 (252)
Q Consensus 76 ~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p-~~--~---~~l~p~l~~lL~~~ 123 (252)
++.+..+|.+.+..+...+...+..+..... +. + ...+|.++++|+..
T Consensus 653 IpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~ 706 (2102)
T PLN03200 653 INPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS 706 (2102)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC
Confidence 7888888888888888888777777774222 21 1 34677788888653
No 57
>KOG1058|consensus
Probab=93.23 E-value=0.54 Score=47.59 Aligned_cols=116 Identities=18% Similarity=0.256 Sum_probs=80.4
Q ss_pred HHHHHhcccCCHHHHHHHHHHhhcCCc--hHhHHHHHHHHHHhhc-CCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHh
Q psy11027 5 NMIRKDLNAQNQYDAGLALSALACFTS--TDLARDLANDIMMLLT-STKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKE 81 (252)
Q Consensus 5 N~i~kDL~s~n~~~~~LAL~~la~i~~--~el~~~l~~~V~~lL~-s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~ 81 (252)
-+++.-|.+++.|+|--|.-++..|-- ..|.++.-.-+.+.+. ..+|.-||-|.+.+ +..+||....+......
T Consensus 137 p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~~e~DpsCkRNAFi~L---~~~D~ErAl~Yl~~~id 213 (948)
T KOG1058|consen 137 PSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFLLTEQDPSCKRNAFLML---FTTDPERALNYLLSNID 213 (948)
T ss_pred HHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHHHhccCchhHHHHHHHH---HhcCHHHHHHHHHhhHh
Confidence 467888999999999999999988773 4444443333333333 47899999887765 56778776655444444
Q ss_pred hhCCCChhHHHHHHHHHHHHHhhCchhhhhhHHHHHHHhhcC
Q psy11027 82 KLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTS 123 (252)
Q Consensus 82 lL~d~d~~V~~~al~ll~ei~~~~p~~~~~l~p~l~~lL~~~ 123 (252)
...+-+....+.-+-++...|..+|..-...+..++.+|.++
T Consensus 214 qi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~st 255 (948)
T KOG1058|consen 214 QIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSST 255 (948)
T ss_pred hccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcC
Confidence 445556777777888999999888875555566666777654
No 58
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=92.92 E-value=1 Score=42.84 Aligned_cols=89 Identities=20% Similarity=0.131 Sum_probs=67.3
Q ss_pred hHHHHHhcccCCHHHHHHHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhh
Q psy11027 4 TNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKL 83 (252)
Q Consensus 4 ~N~i~kDL~s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL 83 (252)
+..+.+-|.++++.++.-|..+++.++.++... .+.+++.+.+|.||..++ ++....+.. ..+.+.+.|
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~----~L~~~L~~~~p~vR~aal-~al~~r~~~------~~~~L~~~L 156 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEP----WLEPLLAASEPPGRAIGL-AALGAHRHD------PGPALEAAL 156 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHH----HHHHHhcCCChHHHHHHH-HHHHhhccC------hHHHHHHHh
Confidence 566777788888889999999999988887654 456677888999998666 444443222 246788888
Q ss_pred CCCChhHHHHHHHHHHHHHh
Q psy11027 84 EDPDSGVQSAAVNVVCELAR 103 (252)
Q Consensus 84 ~d~d~~V~~~al~ll~ei~~ 103 (252)
+|.|+.|..+|+.++-++..
T Consensus 157 ~d~d~~Vra~A~raLG~l~~ 176 (410)
T TIGR02270 157 THEDALVRAAALRALGELPR 176 (410)
T ss_pred cCCCHHHHHHHHHHHHhhcc
Confidence 89999999999988887753
No 59
>KOG1061|consensus
Probab=92.86 E-value=2.3 Score=43.11 Aligned_cols=120 Identities=19% Similarity=0.221 Sum_probs=84.6
Q ss_pred HHHHhcccCCHHHHHHHHHH-hhcCC-chHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhh
Q psy11027 6 MIRKDLNAQNQYDAGLALSA-LACFT-STDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKL 83 (252)
Q Consensus 6 ~i~kDL~s~n~~~~~LAL~~-la~i~-~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL 83 (252)
.+++++.|.-+.-+--|++. ||.+. +.|++. ++++|.+++...+--.||-.++=+...-...|+....+.+.+.+..
T Consensus 17 elks~l~s~~~~kr~~a~kkvIa~Mt~G~DvSs-lF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~ 95 (734)
T KOG1061|consen 17 ELKSQLNSQSKEKRKDAVKKVIAYMTVGKDVSS-LFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDC 95 (734)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHhcCccCcchHh-hhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHHhhhhhhhccC
Confidence 46777777766777777654 57766 677776 9999999999999889999988887777788888888888888888
Q ss_pred CCCChhHHHHHHHHHHHHHhhCchhhhhhHHHHHHHhhcCCChhHH
Q psy11027 84 EDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWML 129 (252)
Q Consensus 84 ~d~d~~V~~~al~ll~ei~~~~p~~~~~l~p~l~~lL~~~~~pwlq 129 (252)
.|+||-+.+.|+-....+- -++...-+...+.+.+++ .+|..+
T Consensus 96 ~d~np~iR~lAlrtm~~l~--v~~i~ey~~~Pl~~~l~d-~~~yvR 138 (734)
T KOG1061|consen 96 EDPNPLIRALALRTMGCLR--VDKITEYLCDPLLKCLKD-DDPYVR 138 (734)
T ss_pred CCCCHHHHHHHhhceeeEe--ehHHHHHHHHHHHHhccC-CChhHH
Confidence 8888888888876655442 123333333344444443 244443
No 60
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=92.54 E-value=0.47 Score=46.62 Aligned_cols=92 Identities=17% Similarity=0.173 Sum_probs=68.6
Q ss_pred HHHHhcccCCHHHHHHHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhC-
Q psy11027 6 MIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLE- 84 (252)
Q Consensus 6 ~i~kDL~s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~- 84 (252)
.+.+..+..+...+-++|++|||+|.+.....+.+-+. .=...++++|..|+.|+-++-..+|+.+... +.+.+.
T Consensus 450 ~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~---l~~i~~n 525 (574)
T smart00638 450 LLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRKVQEV---LLPIYLN 525 (574)
T ss_pred HHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchHHHHH---HHHHHcC
Confidence 34455556788889999999999999999887766654 1123578999999999998888899876543 333333
Q ss_pred -CCChhHHHHHHHHHHHH
Q psy11027 85 -DPDSGVQSAAVNVVCEL 101 (252)
Q Consensus 85 -d~d~~V~~~al~ll~ei 101 (252)
+.++.|..+|+.++.+.
T Consensus 526 ~~e~~EvRiaA~~~lm~t 543 (574)
T smart00638 526 RAEPPEVRMAAVLVLMET 543 (574)
T ss_pred CCCChHHHHHHHHHHHhc
Confidence 46888999998877665
No 61
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=92.36 E-value=0.82 Score=43.51 Aligned_cols=86 Identities=20% Similarity=0.142 Sum_probs=67.8
Q ss_pred HHHHHhcccCCHHHHHHHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhC
Q psy11027 5 NMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLE 84 (252)
Q Consensus 5 N~i~kDL~s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~ 84 (252)
..+.+=+.+.+|.++..++..++..+. + -.+.+.+++++.+|+||..|+-++..+= .+ ...+.+...+.
T Consensus 120 ~~L~~~L~~~~p~vR~aal~al~~r~~-~----~~~~L~~~L~d~d~~Vra~A~raLG~l~--~~----~a~~~L~~al~ 188 (410)
T TIGR02270 120 PWLEPLLAASEPPGRAIGLAALGAHRH-D----PGPALEAALTHEDALVRAAALRALGELP--RR----LSESTLRLYLR 188 (410)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhhcc-C----hHHHHHHHhcCCCHHHHHHHHHHHHhhc--cc----cchHHHHHHHc
Confidence 345667889999999999988887553 2 3457888899999999999999997653 22 34566778899
Q ss_pred CCChhHHHHHHHHHHHH
Q psy11027 85 DPDSGVQSAAVNVVCEL 101 (252)
Q Consensus 85 d~d~~V~~~al~ll~ei 101 (252)
|.|+.|..+|+..+..+
T Consensus 189 d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 189 DSDPEVRFAALEAGLLA 205 (410)
T ss_pred CCCHHHHHHHHHHHHHc
Confidence 99999999999887555
No 62
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=91.61 E-value=1.8 Score=48.79 Aligned_cols=118 Identities=14% Similarity=0.105 Sum_probs=91.7
Q ss_pred HHHHhcccCCHHHHHHHHHHhhcCC--chHhHHH-----HHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCC-----CcC
Q psy11027 6 MIRKDLNAQNQYDAGLALSALACFT--STDLARD-----LANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPD-----ALR 73 (252)
Q Consensus 6 ~i~kDL~s~n~~~~~LAL~~la~i~--~~el~~~-----l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd-----~l~ 73 (252)
.+.+=+.++|+.++-.|..+++++. .++.++. ..+.+.+++++++.-+||.|+-|+..+++...+ .+.
T Consensus 613 ~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~ 692 (2102)
T PLN03200 613 TLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAA 692 (2102)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3444567889999999999999886 4665553 568899999999999999999999999963322 122
Q ss_pred -chhHHHHhhhCCCChhHHHHHHHHHHHHHhhCch----hhhhhHHHHHHHhhcC
Q psy11027 74 -PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK----NYLSLAPVFFKLMTTS 123 (252)
Q Consensus 74 -~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~----~~~~l~p~l~~lL~~~ 123 (252)
..++.+.++|.++|..+..-|+..+..++++... .-.+.+|.++++|.+.
T Consensus 693 ~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G 747 (2102)
T PLN03200 693 EDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREG 747 (2102)
T ss_pred cCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhC
Confidence 4678899999999999999999999999875321 1235688999998753
No 63
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=91.51 E-value=0.37 Score=28.34 Aligned_cols=29 Identities=31% Similarity=0.494 Sum_probs=25.0
Q ss_pred hHHHHhhhCCCChhHHHHHHHHHHHHHhh
Q psy11027 76 FPRLKEKLEDPDSGVQSAAVNVVCELARK 104 (252)
Q Consensus 76 ~~~l~~lL~d~d~~V~~~al~ll~ei~~~ 104 (252)
.|.+.++++|+++.|..+|+..+.++++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 57889999999999999999999998763
No 64
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=91.47 E-value=0.14 Score=43.34 Aligned_cols=70 Identities=20% Similarity=0.305 Sum_probs=54.8
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhhh
Q psy11027 39 ANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL 110 (252)
Q Consensus 39 ~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~ 110 (252)
.+.+.+.+.|.++++||-|+.+..+.+++ +-....+..+...+.|++..|..+.--++.++..++|+...
T Consensus 122 ~~~~~~W~~s~~~w~rR~~~v~~~~~~~~--~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~ 191 (213)
T PF08713_consen 122 LELLEKWAKSDNEWVRRAAIVMLLRYIRK--EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVL 191 (213)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHCTTTHGGG--CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHH
Confidence 44555667889999999999999887777 33344567778888999999999999999999999887443
No 65
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=91.47 E-value=2.5 Score=35.19 Aligned_cols=70 Identities=17% Similarity=0.270 Sum_probs=56.6
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhhhh
Q psy11027 41 DIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLS 111 (252)
Q Consensus 41 ~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~~ 111 (252)
.+.+.+.|.++++||-|..+..+.+.+ .+-...+++.+...+.|++..|..+.-.++.++..++|+....
T Consensus 109 ~~~~w~~s~~~~~rR~~~~~~~~~~~~-~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~ 178 (197)
T cd06561 109 LLEEWAKSENEWVRRAAIVLLLRLIKK-ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIA 178 (197)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 455667788999999999999998887 2223446677888888999999999999999999998874443
No 66
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=90.08 E-value=3 Score=37.59 Aligned_cols=60 Identities=15% Similarity=0.231 Sum_probs=29.0
Q ss_pred HhcccCCHHHHHHHHHHhhcCC--chHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhC
Q psy11027 9 KDLNAQNQYDAGLALSALACFT--STDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKF 68 (252)
Q Consensus 9 kDL~s~n~~~~~LAL~~la~i~--~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~ 68 (252)
.-+.|+++.++..|+.++|-.+ ..+++..-.+-..+.+...++.||-.|.-++.-+...+
T Consensus 34 P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~ 95 (298)
T PF12719_consen 34 PAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTH 95 (298)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Confidence 3444555555555555553322 44555544444444444445555555555555444443
No 67
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=90.03 E-value=3.5 Score=38.54 Aligned_cols=161 Identities=16% Similarity=0.159 Sum_probs=99.9
Q ss_pred HHHhcccCCHHHHHHHHHHhhcCC-chHhHHHH------HHHHHHhhcCCCh--HHHHHHHHHHHHHHh-hCCC----Cc
Q psy11027 7 IRKDLNAQNQYDAGLALSALACFT-STDLARDL------ANDIMMLLTSTKP--YLRKKAVLMMYKVFL-KFPD----AL 72 (252)
Q Consensus 7 i~kDL~s~n~~~~~LAL~~la~i~-~~el~~~l------~~~V~~lL~s~~p--~VRKkA~lal~ki~~-~~Pd----~l 72 (252)
+..=|.+++..++--|.=+++||+ ..+.+|+. ...+..++.++.+ .+-|.|--.+.-+.| ++|. .+
T Consensus 162 fiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i 241 (526)
T COG5064 162 FIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI 241 (526)
T ss_pred HHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHH
Confidence 445577888889999999999988 45666653 3667777777666 344667667776665 4553 23
Q ss_pred CchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhh------hhhHHHHHHHhhcCCChhHHHHHhhc----ccc-chh
Q psy11027 73 RPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY------LSLAPVFFKLMTTSSNNWMLIKIIKL----RLQ-GVF 141 (252)
Q Consensus 73 ~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~------~~l~p~l~~lL~~~~~pwlqikiLkl----rL~-~v~ 141 (252)
....|.+.+++...|+.|+.-|+=.+..+..- |... ....+.++.+|++- +--.|..+||. ..| +.-
T Consensus 242 sqalpiL~KLiys~D~evlvDA~WAiSYlsDg-~~E~i~avld~g~~~RLvElLs~~-sa~iqtPalR~vGNIVTG~D~Q 319 (526)
T COG5064 242 SQALPILAKLIYSRDPEVLVDACWAISYLSDG-PNEKIQAVLDVGIPGRLVELLSHE-SAKIQTPALRSVGNIVTGSDDQ 319 (526)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccC-cHHHHHHHHhcCCcHHHHHHhcCc-cccccCHHHHhhcCeeecCccc
Confidence 35678888999999999998888888877643 3211 23556777777752 22235555554 011 111
Q ss_pred hhhhhhhhcccCccchhchhhHHHHHhcCCCcchhHHH
Q psy11027 142 AVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIK 179 (252)
Q Consensus 142 a~~v~~e~~~~n~~~~l~l~~~l~~lL~~~~nN~~~i~ 179 (252)
+++++ |. |..+.+..+|++...|.|-=+
T Consensus 320 TqviI------~~----G~L~a~~~lLs~~ke~irKEa 347 (526)
T COG5064 320 TQVII------NC----GALKAFRSLLSSPKENIRKEA 347 (526)
T ss_pred eehhe------ec----ccHHHHHHHhcChhhhhhhhh
Confidence 11111 22 333667777877777766443
No 68
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=89.99 E-value=0.96 Score=45.67 Aligned_cols=101 Identities=14% Similarity=0.144 Sum_probs=75.5
Q ss_pred cCCHHHHHHHHHHhhcCC--chHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhCCCChhH
Q psy11027 13 AQNQYDAGLALSALACFT--STDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGV 90 (252)
Q Consensus 13 s~n~~~~~LAL~~la~i~--~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~d~d~~V 90 (252)
+++|.+++-|.-++|.+. -...++.-..-+.+-+.+.+..|||.+.+.+.-++...-=-+....+.+..+|.|+|.++
T Consensus 945 ~p~P~IR~NaVvglgD~~vcfN~~~de~t~yLyrrL~De~~~V~rtclmti~fLilagq~KVKGqlg~ma~~L~deda~I 1024 (1128)
T COG5098 945 HPIPRIRANAVVGLGDFLVCFNTTADEHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQLKVKGQLGKMALLLTDEDAEI 1024 (1128)
T ss_pred CCCcceeccceeeccccceehhhhhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHccceeeccchhhhHhhccCCcchH
Confidence 788888888887777654 455566666667777888888899988888887776655445566678888888999988
Q ss_pred HHHHHHHHHHHHhhCchhhhhhH
Q psy11027 91 QSAAVNVVCELARKNPKNYLSLA 113 (252)
Q Consensus 91 ~~~al~ll~ei~~~~p~~~~~l~ 113 (252)
.--|=.++.+++.++-..|-.++
T Consensus 1025 sdmar~fft~~a~KdNt~yn~fi 1047 (1128)
T COG5098 1025 SDMARHFFTQIAKKDNTMYNGFI 1047 (1128)
T ss_pred HHHHHHHHHHHHhcccchhhhhH
Confidence 88888888888887655554433
No 69
>KOG2160|consensus
Probab=89.82 E-value=5.2 Score=37.16 Aligned_cols=97 Identities=12% Similarity=0.184 Sum_probs=72.1
Q ss_pred hcccCCHHHHHHHHHHhhcCC--chHhHHHH-----HHHHHHhhcC-CChHHHHHHHHHHHHHHhhCCCCcCc-----hh
Q psy11027 10 DLNAQNQYDAGLALSALACFT--STDLARDL-----ANDIMMLLTS-TKPYLRKKAVLMMYKVFLKFPDALRP-----AF 76 (252)
Q Consensus 10 DL~s~n~~~~~LAL~~la~i~--~~el~~~l-----~~~V~~lL~s-~~p~VRKkA~lal~ki~~~~Pd~l~~-----~~ 76 (252)
-+++++..+|.+|.+.+|... +|..-+.+ ...+.+.+++ .+-.+|.||..|++.++|.+|..... .+
T Consensus 132 ~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~ 211 (342)
T KOG2160|consen 132 YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGY 211 (342)
T ss_pred HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCH
Confidence 567899999999999997765 44444432 3556666665 56678899999999999999987653 36
Q ss_pred HHHHhhhCCC--ChhHHHHHHHHHHHHHhhCc
Q psy11027 77 PRLKEKLEDP--DSGVQSAAVNVVCELARKNP 106 (252)
Q Consensus 77 ~~l~~lL~d~--d~~V~~~al~ll~ei~~~~p 106 (252)
..+++.|.++ +.-...-++.++..+.+..+
T Consensus 212 ~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~ 243 (342)
T KOG2160|consen 212 QVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK 243 (342)
T ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh
Confidence 7889999884 55555667778888877554
No 70
>KOG0168|consensus
Probab=89.28 E-value=0.43 Score=48.80 Aligned_cols=79 Identities=18% Similarity=0.265 Sum_probs=60.9
Q ss_pred hHhHHHHH----HHHHHhhcC-CChHHHHHHHHHHHHHH-hhCCCCcCc------hhHHHHhhhCCCChhHHHHHHHHHH
Q psy11027 32 TDLARDLA----NDIMMLLTS-TKPYLRKKAVLMMYKVF-LKFPDALRP------AFPRLKEKLEDPDSGVQSAAVNVVC 99 (252)
Q Consensus 32 ~el~~~l~----~~V~~lL~s-~~p~VRKkA~lal~ki~-~~~Pd~l~~------~~~~l~~lL~d~d~~V~~~al~ll~ 99 (252)
||+.+.+. +-+++..++ -+|+||.|+.-|++|+. -.+++++.. .-..+..+|+.+|+.|+..|+.+..
T Consensus 546 pel~q~F~~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAE 625 (1051)
T KOG0168|consen 546 PELLQSFGKDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAE 625 (1051)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHH
Confidence 57766544 445555565 59999999999999974 455666542 2256788899999999999999999
Q ss_pred HHHhhCchhhh
Q psy11027 100 ELARKNPKNYL 110 (252)
Q Consensus 100 ei~~~~p~~~~ 110 (252)
-++++.|+.|.
T Consensus 626 iLmeKlpd~F~ 636 (1051)
T KOG0168|consen 626 ILMEKLPDTFS 636 (1051)
T ss_pred HHHHHhHHHhh
Confidence 99999998664
No 71
>KOG1077|consensus
Probab=88.81 E-value=26 Score=35.83 Aligned_cols=200 Identities=17% Similarity=0.274 Sum_probs=123.4
Q ss_pred HHHHhhcCC-chHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCC--CCcCchhHHHHhhhC-CCChhHHHHHHHH
Q psy11027 22 ALSALACFT-STDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFP--DALRPAFPRLKEKLE-DPDSGVQSAAVNV 97 (252)
Q Consensus 22 AL~~la~i~-~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~P--d~l~~~~~~l~~lL~-d~d~~V~~~al~l 97 (252)
|++.+..+. ++++...-...+-+.++|..+.+|--|.-.+.++.-.-+ |.+..-.+.+...|. ++|.+|.--|+.+
T Consensus 313 aI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDL 392 (938)
T KOG1077|consen 313 AISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDL 392 (938)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 556666666 688888889999999999999999888877777664432 344444677778887 9999999999999
Q ss_pred HHHHHhhCchhhhhhHHHHHHHhhcC---------------------CChhHHHHHhhc-cccchhhhhhhhhhcccCcc
Q psy11027 98 VCELARKNPKNYLSLAPVFFKLMTTS---------------------SNNWMLIKIIKL-RLQGVFAVNVVCELARKNPK 155 (252)
Q Consensus 98 l~ei~~~~p~~~~~l~p~l~~lL~~~---------------------~~pwlqikiLkl-rL~~v~a~~v~~e~~~~n~~ 155 (252)
++.+|.. ++.+.++..+.+.|.+. -=.|-..-+|++ |++ +
T Consensus 393 LY~mcD~--~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiria----------------g 454 (938)
T KOG1077|consen 393 LYAMCDV--SNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIA----------------G 454 (938)
T ss_pred HHHHhch--hhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHh----------------c
Confidence 9999964 34445555555555431 113444444444 221 0
Q ss_pred chhchhhHHHHHhc---CCCcchhHHH------HHHHhhHHHHHHH-HHHHHHHHhhccCh-h---HHHHHHHhhhhccC
Q psy11027 156 NYLSLAPVFFKLMT---TSSNNWMLIK------IIKLVLYAVLYAA-AWICGEFREHLDSP-R---ATLEAMTRRGLSLL 221 (252)
Q Consensus 156 ~~l~l~~~l~~lL~---~~~nN~~~i~------likl~~~e~l~~~-~~iv~~~~~~l~~~-~---~~~~~~l~~~i~~l 221 (252)
+|. -.++-+++.. +++.=-+|-+ +.|-..-|.+-.+ +.|.|||-+++.+- + ...-..+..|.-.-
T Consensus 455 d~v-sdeVW~RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~ 533 (938)
T KOG1077|consen 455 DYV-SDEVWYRVVQIVVNNEDLQGYAAKRLFEYLQKPACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLC 533 (938)
T ss_pred ccc-cHHHHHHhheeEecchhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccC
Confidence 111 1122222221 1111111111 1122233433333 68999999988762 2 24445558888888
Q ss_pred CccchHHHHHHHHHHHHHH
Q psy11027 222 PGHIQAVYVQNMLKILARI 240 (252)
Q Consensus 222 ~~~~~~~~~~~~~k~~~~~ 240 (252)
+....+.-+.|+.|++-..
T Consensus 534 s~~tr~lLLtTyiKl~nl~ 552 (938)
T KOG1077|consen 534 SPVTRALLLTTYIKLINLF 552 (938)
T ss_pred ChhHHHHHHHHHHHHHhhC
Confidence 8888888888888887643
No 72
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=88.70 E-value=2.8 Score=37.93 Aligned_cols=90 Identities=27% Similarity=0.275 Sum_probs=71.2
Q ss_pred hHHHHHhcccCCHHHHHHHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhh
Q psy11027 4 TNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKL 83 (252)
Q Consensus 4 ~N~i~kDL~s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL 83 (252)
...+.+.+.++++.++..|...++.++..+-.+ .+.+++.+.++.||..|+.|+.++- +|+ ..+.+.+.|
T Consensus 45 ~~~~~~~l~~~~~~vr~~aa~~l~~~~~~~av~----~l~~~l~d~~~~vr~~a~~aLg~~~--~~~----a~~~li~~l 114 (335)
T COG1413 45 ADELLKLLEDEDLLVRLSAAVALGELGSEEAVP----LLRELLSDEDPRVRDAAADALGELG--DPE----AVPPLVELL 114 (335)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhhchHHHHH----HHHHHhcCCCHHHHHHHHHHHHccC--Chh----HHHHHHHHH
Confidence 456788899999999999999999888876544 5678899999999999999776542 222 345566666
Q ss_pred C-CCChhHHHHHHHHHHHHHh
Q psy11027 84 E-DPDSGVQSAAVNVVCELAR 103 (252)
Q Consensus 84 ~-d~d~~V~~~al~ll~ei~~ 103 (252)
. |.|.+|...+...+-.+-.
T Consensus 115 ~~d~~~~vR~~aa~aL~~~~~ 135 (335)
T COG1413 115 ENDENEGVRAAAARALGKLGD 135 (335)
T ss_pred HcCCcHhHHHHHHHHHHhcCc
Confidence 6 8999999999988887754
No 73
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=88.12 E-value=3 Score=37.61 Aligned_cols=69 Identities=19% Similarity=0.231 Sum_probs=59.3
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCc
Q psy11027 38 LANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNP 106 (252)
Q Consensus 38 l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p 106 (252)
+-.-|...+.|+++.||+.|.-|+.-+--.+.+.....++.+.+.++..++.|...|+..+.++...++
T Consensus 28 l~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g 96 (298)
T PF12719_consen 28 LDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHG 96 (298)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Confidence 444455899999999999999999999888988888888888888866699999999999999987654
No 74
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=88.05 E-value=3.2 Score=42.27 Aligned_cols=119 Identities=20% Similarity=0.358 Sum_probs=83.1
Q ss_pred HHHHHhcccCCHHHHHHHHHHhhcCC-----chHhHH-HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCC----cC-
Q psy11027 5 NMIRKDLNAQNQYDAGLALSALACFT-----STDLAR-DLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDA----LR- 73 (252)
Q Consensus 5 N~i~kDL~s~n~~~~~LAL~~la~i~-----~~el~~-~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~----l~- 73 (252)
..+.+=|.+.|+....++++++.++. ..+|.+ .+.+.+.+++.+.+.-+++.|.-.++-+ -.+|+. +.
T Consensus 293 ~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NL-Sfd~~~R~~mV~~ 371 (708)
T PF05804_consen 293 SLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNL-SFDPELRSQMVSL 371 (708)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHh-CcCHHHHHHHHHC
Confidence 44566678899999999999998877 345555 3788899999998888877766555433 233433 22
Q ss_pred chhHHHHhhhCCCChhHHHHHHHHHHHHHhhCch----hhhhhHHHHHHHhhcCCCh
Q psy11027 74 PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK----NYLSLAPVFFKLMTTSSNN 126 (252)
Q Consensus 74 ~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~----~~~~l~p~l~~lL~~~~~p 126 (252)
..+|++..+|.|++.. ..++.+++.++.+... .+...+|.++++|...+++
T Consensus 372 GlIPkLv~LL~d~~~~--~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~ 426 (708)
T PF05804_consen 372 GLIPKLVELLKDPNFR--EVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEE 426 (708)
T ss_pred CCcHHHHHHhCCCchH--HHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCc
Confidence 4679999999876544 3467788888764321 3456789999887654444
No 75
>KOG2274|consensus
Probab=87.94 E-value=9.3 Score=39.72 Aligned_cols=224 Identities=15% Similarity=0.094 Sum_probs=128.2
Q ss_pred cCCHHHHHHHHHHhhcCCchHhHHHHHHHHHHhhcC----CChHHHHHHHHHHHHHHhhCCCCcC---c-hhHHHHhhh-
Q psy11027 13 AQNQYDAGLALSALACFTSTDLARDLANDIMMLLTS----TKPYLRKKAVLMMYKVFLKFPDALR---P-AFPRLKEKL- 83 (252)
Q Consensus 13 s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s----~~p~VRKkA~lal~ki~~~~Pd~l~---~-~~~~l~~lL- 83 (252)
+.-|+++.-|+++++..++++.+..+.|.|.+.+.+ ++.-+----.-++....+.+|+-.- . ..|.+..+.
T Consensus 502 ~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~ 581 (1005)
T KOG2274|consen 502 DVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFL 581 (1005)
T ss_pred CCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHH
Confidence 456788889999999999999888888877777654 4444544455566777888887542 1 234444444
Q ss_pred -CCCChhHHHHHHHHHHHHHhhCc---hhhhhhHHHHHHHhhcC------CChhHHHHHhhc--ccc----------ch-
Q psy11027 84 -EDPDSGVQSAAVNVVCELARKNP---KNYLSLAPVFFKLMTTS------SNNWMLIKIIKL--RLQ----------GV- 140 (252)
Q Consensus 84 -~d~d~~V~~~al~ll~ei~~~~p---~~~~~l~p~l~~lL~~~------~~pwlqikiLkl--rL~----------~v- 140 (252)
...||.|..-+--++.++++... .....++|.++++|..- +.+..-+-+|.. |=+ .+
T Consensus 582 k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~F 661 (1005)
T KOG2274|consen 582 KYSEDPQVASLAQDLFEELLQIAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAF 661 (1005)
T ss_pred HhcCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHh
Confidence 25788888888889988887421 23456889999988631 222333333332 211 11
Q ss_pred --hhhhhhhhhcc---cCccchhchhhHHHHHhc-----------CCCcchhHHH--HHHHhhHHHHHHHH----HHHHH
Q psy11027 141 --FAVNVVCELAR---KNPKNYLSLAPVFFKLMT-----------TSSNNWMLIK--IIKLVLYAVLYAAA----WICGE 198 (252)
Q Consensus 141 --~a~~v~~e~~~---~n~~~~l~l~~~l~~lL~-----------~~~nN~~~i~--likl~~~e~l~~~~----~iv~~ 198 (252)
++..+...+.. +|.+ +.++-|.. ....|.+||- +-+|+.+|.=-.++ ++|-.
T Consensus 662 paVak~tlHsdD~~tlQ~~~------EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~t 735 (1005)
T KOG2274|consen 662 PAVAKITLHSDDHETLQNAT------ECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLT 735 (1005)
T ss_pred HHhHhheeecCChHHHHhHH------HHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHH
Confidence 11112222211 3333 22222221 3344566664 33555333222223 44444
Q ss_pred HHhhccCh-hHHHHHHHhhhhccCCccchHHHHHHHHHHHHHHHH
Q psy11027 199 FREHLDSP-RATLEAMTRRGLSLLPGHIQAVYVQNMLKILARILD 242 (252)
Q Consensus 199 ~~~~l~~~-~~~~~~~l~~~i~~l~~~~~~~~~~~~~k~~~~~~~ 242 (252)
++.++.+- +..+..+|+..|+-|.-..+==.+|+..-+|+|...
T Consensus 736 Lit~a~~el~~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~ 780 (1005)
T KOG2274|consen 736 LITHASSELGPNLDQILRAVISRLQQAETLSVIQSLIMVFAHLVH 780 (1005)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Confidence 44444433 226666777777777754445568888888888754
No 76
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=87.63 E-value=2.5 Score=35.36 Aligned_cols=69 Identities=20% Similarity=0.268 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHhhCCCCcC--chhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhh----hhhHHHHHHHhh
Q psy11027 52 YLRKKAVLMMYKVFLKFPDALR--PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY----LSLAPVFFKLMT 121 (252)
Q Consensus 52 ~VRKkA~lal~ki~~~~Pd~l~--~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~----~~l~p~l~~lL~ 121 (252)
-+||.|+-|++.++...++-+. .+++++..-|+| ++.+..-+...+..++...|+.. ..+++.+-+.|+
T Consensus 42 elRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~ 116 (169)
T PF08623_consen 42 ELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLS 116 (169)
T ss_dssp HHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Confidence 3999999999999998888776 467999999999 99999999999999998888633 345555555554
No 77
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=87.21 E-value=0.85 Score=29.08 Aligned_cols=38 Identities=24% Similarity=0.333 Sum_probs=29.0
Q ss_pred HHHHHHhhCCCCcC--chhHHHHhhhCCCChhHHHHHHHH
Q psy11027 60 MMYKVFLKFPDALR--PAFPRLKEKLEDPDSGVQSAAVNV 97 (252)
Q Consensus 60 al~ki~~~~Pd~l~--~~~~~l~~lL~d~d~~V~~~al~l 97 (252)
|+..+...+|+++. ...+.+.+.|.|++++|.-+|+.+
T Consensus 2 ~l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 2 ALSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred hHHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 45667778888776 356788888888888888888765
No 78
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=86.96 E-value=2 Score=33.90 Aligned_cols=55 Identities=16% Similarity=0.336 Sum_probs=36.0
Q ss_pred ccCCHHHHHHHHHHhhcCC-----chHhHHH--HHHHHHHhhcCCChHHHHHHHHHHHHHHh
Q psy11027 12 NAQNQYDAGLALSALACFT-----STDLARD--LANDIMMLLTSTKPYLRKKAVLMMYKVFL 66 (252)
Q Consensus 12 ~s~n~~~~~LAL~~la~i~-----~~el~~~--l~~~V~~lL~s~~p~VRKkA~lal~ki~~ 66 (252)
.|.++.+.+.|..=||.+. +..+++. .-..|+++|+|+++-||+-|..|+-++..
T Consensus 54 ~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 54 KSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred cCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3457777777777776644 2333433 23667788888888888888888877654
No 79
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=86.80 E-value=2 Score=35.27 Aligned_cols=124 Identities=13% Similarity=0.203 Sum_probs=79.4
Q ss_pred CCChHHHHHHHHHHHHHHhhCCCCcCchh-HHHHhhhCCCChhHHHHHHHHHHHHHhhCchh----h--hhhHHHHHHHh
Q psy11027 48 STKPYLRKKAVLMMYKVFLKFPDALRPAF-PRLKEKLEDPDSGVQSAAVNVVCELARKNPKN----Y--LSLAPVFFKLM 120 (252)
Q Consensus 48 s~~p~VRKkA~lal~ki~~~~Pd~l~~~~-~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~----~--~~l~p~l~~lL 120 (252)
...+-+|-.|.+++.|++...++-....+ +-+..++.+.+..-...+++++..+.+-.|+. | .++.+.+..++
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~ 95 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLA 95 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHH
Confidence 45778999999999999877776655443 55666666655556667778888877666652 2 24555555555
Q ss_pred h-cCCChhHHHHHhhccccchhhhhhhhhhcc-cCccchhchhhHHHHHhcCCCcc--hhHHH
Q psy11027 121 T-TSSNNWMLIKIIKLRLQGVFAVNVVCELAR-KNPKNYLSLAPVFFKLMTTSSNN--WMLIK 179 (252)
Q Consensus 121 ~-~~~~pwlqikiLklrL~~v~a~~v~~e~~~-~n~~~~l~l~~~l~~lL~~~~nN--~~~i~ 179 (252)
. ...++=.|..++++ +..++.-+..+ .+.++|+ +.+.+....++|+ .|..+
T Consensus 96 ~~~~~~~~~~~~~lel-----l~aAc~d~~~r~~I~~~~~---~~L~~~~~~~~~~~~ir~~A 150 (157)
T PF11701_consen 96 SRKSKDRKVQKAALEL-----LSAACIDKSCRTFISKNYV---SWLKELYKNSKDDSEIRVLA 150 (157)
T ss_dssp H-CTS-HHHHHHHHHH-----HHHHTTSHHHHHCCHHHCH---HHHHHHTTTCC-HH-CHHHH
T ss_pred hcccCCHHHHHHHHHH-----HHHHHccHHHHHHHHHHHH---HHHHHHHccccchHHHHHHH
Confidence 5 35677777777776 33334444444 4566666 7788888666655 45544
No 80
>KOG0946|consensus
Probab=86.71 E-value=3.7 Score=42.06 Aligned_cols=116 Identities=19% Similarity=0.272 Sum_probs=86.3
Q ss_pred hHHHHHhcccCCHHHHHHHHHHhhcCCchH------------------hHH------HHHHHHHHhhcCCChHHHHHHHH
Q psy11027 4 TNMIRKDLNAQNQYDAGLALSALACFTSTD------------------LAR------DLANDIMMLLTSTKPYLRKKAVL 59 (252)
Q Consensus 4 ~N~i~kDL~s~n~~~~~LAL~~la~i~~~e------------------l~~------~l~~~V~~lL~s~~p~VRKkA~l 59 (252)
+|.+++|-. |+.....||.++.++-+.| +++ +.+.-+...+.+-+.|||.-|+-
T Consensus 67 i~vL~~D~~--D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIq 144 (970)
T KOG0946|consen 67 IQVLQRDYM--DPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQ 144 (970)
T ss_pred HHHHhhccC--CHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHH
Confidence 678888854 6789999999998865433 111 33345556666789999999999
Q ss_pred HHHHHHhhCCCCc-------CchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCch-----hhhhhHHHHHHHhh
Q psy11027 60 MMYKVFLKFPDAL-------RPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK-----NYLSLAPVFFKLMT 121 (252)
Q Consensus 60 al~ki~~~~Pd~l-------~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~-----~~~~l~p~l~~lL~ 121 (252)
-+..+.+.-|--+ +..+.++..+|.|...-+.-.|+-+++++.+.+|. .|....-.++.++.
T Consensus 145 Llsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIe 218 (970)
T KOG0946|consen 145 LLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIE 218 (970)
T ss_pred HHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHH
Confidence 9999888887533 24578999999999999999999999999999986 24444445555543
No 81
>KOG4224|consensus
Probab=86.68 E-value=4.7 Score=38.05 Aligned_cols=113 Identities=16% Similarity=0.160 Sum_probs=79.4
Q ss_pred HhcccCCHHHHHHHHHHhhcCCchHhHH--------HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcC-----ch
Q psy11027 9 KDLNAQNQYDAGLALSALACFTSTDLAR--------DLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PA 75 (252)
Q Consensus 9 kDL~s~n~~~~~LAL~~la~i~~~el~~--------~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~-----~~ 75 (252)
.=+.++|+.++--+=+++++|+..+-++ .+.+.+..+|.++++-+|=.|.+|+.- .-.+.+... ..
T Consensus 215 sll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrn-lasdt~Yq~eiv~ag~ 293 (550)
T KOG4224|consen 215 SLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRN-LASDTEYQREIVEAGS 293 (550)
T ss_pred hhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhh-hcccchhhhHHHhcCC
Confidence 3457889999999999999999766655 377889999999999999999998743 333443332 35
Q ss_pred hHHHHhhhCCCChhHHHHHHHHHHHHHhh--Cchhh--hhhHHHHHHHhhc
Q psy11027 76 FPRLKEKLEDPDSGVQSAAVNVVCELARK--NPKNY--LSLAPVFFKLMTT 122 (252)
Q Consensus 76 ~~~l~~lL~d~d~~V~~~al~ll~ei~~~--~p~~~--~~l~p~l~~lL~~ 122 (252)
.|.+.++|.|+---.+.+.+.++-.++-+ |.... ..+...++++|.-
T Consensus 294 lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~ 344 (550)
T KOG4224|consen 294 LPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRA 344 (550)
T ss_pred chHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhc
Confidence 78999999877666667777777555432 22111 2344557777764
No 82
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=86.60 E-value=1.5 Score=32.84 Aligned_cols=67 Identities=16% Similarity=0.109 Sum_probs=54.3
Q ss_pred HHHHHhcccCCHHHHHHHHHHhhcCC-chH----hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCC
Q psy11027 5 NMIRKDLNAQNQYDAGLALSALACFT-STD----LARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDA 71 (252)
Q Consensus 5 N~i~kDL~s~n~~~~~LAL~~la~i~-~~e----l~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~ 71 (252)
+...+|++++.+.+||-||..++++- +.+ -.+.+..-..+.+.++++||-=.|+-++..+-..+|+.
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~ 77 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE 77 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH
Confidence 45678999999999999999998754 222 23456666678888999999999999999999999973
No 83
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=86.58 E-value=2.7 Score=31.77 Aligned_cols=68 Identities=16% Similarity=0.269 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHhhCCCCcC----chhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhhhhhHHHHHHHh
Q psy11027 53 LRKKAVLMMYKVFLKFPDALR----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM 120 (252)
Q Consensus 53 VRKkA~lal~ki~~~~Pd~l~----~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~~l~p~l~~lL 120 (252)
.||-+.+|+..+-.--+..+. ..++.+.+.++|+|..|.-.|+-.++.+++...+......+.++..|
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L 73 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDAL 73 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477778888777655554444 35677888899999999999999999999876654444445555443
No 84
>KOG0212|consensus
Probab=86.48 E-value=6.8 Score=38.76 Aligned_cols=59 Identities=17% Similarity=0.278 Sum_probs=42.6
Q ss_pred HHHHHhhCCCCcC----chhHHHHhhhCCCChhHHHHHHHHHHHHHhhCch-hhhhhHHHHHHH
Q psy11027 61 MYKVFLKFPDALR----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK-NYLSLAPVFFKL 119 (252)
Q Consensus 61 l~ki~~~~Pd~l~----~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~-~~~~l~p~l~~l 119 (252)
+..+|++.|.-+- ..++.+.+-|+|++--|+.-++.++.++|....+ +++++.-.+..+
T Consensus 360 i~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~sLL~~ 423 (675)
T KOG0212|consen 360 IILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKFLLSLLEM 423 (675)
T ss_pred HHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHHHHHHHHH
Confidence 4557778886442 3578888889999999999999999999986433 455555444443
No 85
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=85.80 E-value=0.58 Score=39.57 Aligned_cols=71 Identities=18% Similarity=0.179 Sum_probs=57.3
Q ss_pred HHhcccCCHHHHHHHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHH
Q psy11027 8 RKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPR 78 (252)
Q Consensus 8 ~kDL~s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~ 78 (252)
.+=+.|.|++.+-.|+.++......+-.+.+...+...+.+++.||||...-++-.+.+++|+.+..+...
T Consensus 126 ~~W~~s~~~w~rR~~~v~~~~~~~~~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l~~ 196 (213)
T PF08713_consen 126 EKWAKSDNEWVRRAAIVMLLRYIRKEDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEFLQK 196 (213)
T ss_dssp HHHHHCSSHHHHHHHHHCTTTHGGGCHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred HHHHhCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 34457899999999998887766666667788888888999999999999999999999999988766543
No 86
>KOG4524|consensus
Probab=85.26 E-value=4.4 Score=42.22 Aligned_cols=90 Identities=14% Similarity=0.176 Sum_probs=72.9
Q ss_pred hHhHHHHHHHHHHhhcCCChHHHHHHHHHHHH---HHhhCCCCcC----chhHHHHhhhCCCChhHHHHHHHHHHHHHhh
Q psy11027 32 TDLARDLANDIMMLLTSTKPYLRKKAVLMMYK---VFLKFPDALR----PAFPRLKEKLEDPDSGVQSAAVNVVCELARK 104 (252)
Q Consensus 32 ~el~~~l~~~V~~lL~s~~p~VRKkA~lal~k---i~~~~Pd~l~----~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~ 104 (252)
-+|++++.....++++|.+-.+|=||.-++.- +...+++.+- .+||.+...+.++||.++..|+.++..++.+
T Consensus 798 v~iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~ 877 (1014)
T KOG4524|consen 798 VKIVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKY 877 (1014)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 46888999999999999999999999888865 4567787553 4799999999999999999999999999987
Q ss_pred Cchh-----hhhhHHHHHHHhh
Q psy11027 105 NPKN-----YLSLAPVFFKLMT 121 (252)
Q Consensus 105 ~p~~-----~~~l~p~l~~lL~ 121 (252)
..+. .+.+.|.+-+.+.
T Consensus 878 sgDFv~sR~l~dvlP~l~~~~~ 899 (1014)
T KOG4524|consen 878 SGDFVASRFLEDVLPWLKHLCQ 899 (1014)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 6652 3456776654443
No 87
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=84.91 E-value=11 Score=31.59 Aligned_cols=77 Identities=19% Similarity=0.227 Sum_probs=63.3
Q ss_pred HhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcC--chhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhhh
Q psy11027 33 DLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALR--PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL 110 (252)
Q Consensus 33 el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~--~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~ 110 (252)
-+++.-.++|.++..++++.+|..|.-.+..+.+.- ++. ..+|.+.-+..|+++.+...|..++.++.+++|+...
T Consensus 4 ~l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qG--LvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 4 ALVQRYLKNILELCLSSDDSVRLAALQVLELILRQG--LVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC--CCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH
Confidence 456778899999999999999999988887777632 332 2568888899999999999999999999999887554
Q ss_pred h
Q psy11027 111 S 111 (252)
Q Consensus 111 ~ 111 (252)
.
T Consensus 82 ~ 82 (187)
T PF12830_consen 82 S 82 (187)
T ss_pred H
Confidence 3
No 88
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=83.75 E-value=2.9 Score=33.87 Aligned_cols=91 Identities=22% Similarity=0.254 Sum_probs=58.0
Q ss_pred cCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCch
Q psy11027 28 CFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK 107 (252)
Q Consensus 28 ~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~ 107 (252)
|..+-...+.+......+|+++++-|.|.|.-|+.. | ++| .+...-+.+..+++|+...--.....+-.+=....++
T Consensus 8 npk~l~~~~~l~~~~~~LL~~~d~~vQklAL~cll~-~-k~~-~l~pY~d~L~~Lldd~~frdeL~~f~~~~~~~~I~~e 84 (141)
T PF07539_consen 8 NPKSLYRSDELYDALLRLLSSRDPEVQKLALDCLLT-W-KDP-YLTPYKDNLENLLDDKTFRDELTTFNLSDESSVIEEE 84 (141)
T ss_pred CcHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-h-CcH-HHHhHHHHHHHHcCcchHHHHHHhhcccCCcCCCCHH
Confidence 333444566788888999999999999999999875 3 334 3445568888888876433222222211111012245
Q ss_pred hhhhhHHHHHHHhh
Q psy11027 108 NYLSLAPVFFKLMT 121 (252)
Q Consensus 108 ~~~~l~p~l~~lL~ 121 (252)
+-..++|.++++|.
T Consensus 85 hR~~l~pvvlRILy 98 (141)
T PF07539_consen 85 HRPELMPVVLRILY 98 (141)
T ss_pred HHhHHHHHHHHHHH
Confidence 56678899998875
No 89
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=82.90 E-value=6.8 Score=37.06 Aligned_cols=85 Identities=9% Similarity=0.169 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCc-C----chhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhh
Q psy11027 35 ARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDAL-R----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY 109 (252)
Q Consensus 35 ~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l-~----~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~ 109 (252)
...+.+.+.+.....+...|-.-..|+..+.+..|..+ . ...|-+.+-|+-+|+.+..+++..+..+.+..|+..
T Consensus 321 F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i 400 (415)
T PF12460_consen 321 FTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELI 400 (415)
T ss_pred HHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHH
Confidence 33455555555555555566666778888999999643 2 245777888888999999999999999999998866
Q ss_pred hhhHHHHHHH
Q psy11027 110 LSLAPVFFKL 119 (252)
Q Consensus 110 ~~l~p~l~~l 119 (252)
.+.+..++..
T Consensus 401 ~~hl~sLI~~ 410 (415)
T PF12460_consen 401 SEHLSSLIPR 410 (415)
T ss_pred HHHHHHHHHH
Confidence 6555555543
No 90
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=82.89 E-value=5.5 Score=32.18 Aligned_cols=66 Identities=20% Similarity=0.275 Sum_probs=45.7
Q ss_pred chHHHHHhcccCCHHHHHHHHHHh----hcCCc---hHhH-HHHHHHHHHhhc-CCChHHHHHHHHHHHHHHhhC
Q psy11027 3 TTNMIRKDLNAQNQYDAGLALSAL----ACFTS---TDLA-RDLANDIMMLLT-STKPYLRKKAVLMMYKVFLKF 68 (252)
Q Consensus 3 ~~N~i~kDL~s~n~~~~~LAL~~l----a~i~~---~el~-~~l~~~V~~lL~-s~~p~VRKkA~lal~ki~~~~ 68 (252)
++..|+|-|+++||.++-+||..+ .|-|. .+++ +.+.+++.++++ ..++.||+|+...+..-....
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 356799999999999999999877 22221 2333 246667777776 478889999877765544333
No 91
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=82.83 E-value=25 Score=29.76 Aligned_cols=52 Identities=21% Similarity=0.223 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHhh-CCCCcCchh----------------HHHHhhhCCCChhHHHHHHHHHHHHHhh
Q psy11027 53 LRKKAVLMMYKVFLK-FPDALRPAF----------------PRLKEKLEDPDSGVQSAAVNVVCELARK 104 (252)
Q Consensus 53 VRKkA~lal~ki~~~-~Pd~l~~~~----------------~~l~~lL~d~d~~V~~~al~ll~ei~~~ 104 (252)
||..|..|+.-+.+. +|-.+-.+| .-+.-++.|+++.|..+|+.++..+...
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~g 70 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEG 70 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHc
Confidence 677888888777777 433333222 2334456789999999999999988765
No 92
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=82.18 E-value=8.2 Score=31.30 Aligned_cols=63 Identities=21% Similarity=0.247 Sum_probs=45.9
Q ss_pred chHHHHHhcccCCHHHHHHHHHHhh----cCC---chHhH-HHHHHHHHHhhcC-CChHHHHHHHHHHHHHH
Q psy11027 3 TTNMIRKDLNAQNQYDAGLALSALA----CFT---STDLA-RDLANDIMMLLTS-TKPYLRKKAVLMMYKVF 65 (252)
Q Consensus 3 ~~N~i~kDL~s~n~~~~~LAL~~la----~i~---~~el~-~~l~~~V~~lL~s-~~p~VRKkA~lal~ki~ 65 (252)
+...|+|=++++||.++-.||..+- |-| -.|++ +.+.+++.++++. .++.||+|..-.+..-.
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 3567899999999999999998872 222 12333 3577778888887 78889999877765543
No 93
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=82.16 E-value=0.81 Score=45.24 Aligned_cols=91 Identities=15% Similarity=0.161 Sum_probs=58.2
Q ss_pred HHHhcccCCHHHHHHHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhCC-
Q psy11027 7 IRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLED- 85 (252)
Q Consensus 7 i~kDL~s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~d- 85 (252)
+++-....+...+-++|++|||+|.++.++.+.+-+..-- .....+|-.|+.|+.++-..+|+.+.. .+.+.+.|
T Consensus 495 l~~~~~~~~~~~~~~~LkaLgN~g~~~~i~~l~~~i~~~~-~~~~~~R~~Ai~Alr~~~~~~~~~v~~---~l~~I~~n~ 570 (618)
T PF01347_consen 495 LKEAVSRGDEEEKIVYLKALGNLGHPESIPVLLPYIEGKE-EVPHFIRVAAIQALRRLAKHCPEKVRE---ILLPIFMNT 570 (618)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHT-GGGHHHHHTTSTTSS--S-HHHHHHHHHTTTTGGGT-HHHHHH---HHHHHHH-T
T ss_pred HHHHhhccCHHHHHHHHHHhhccCCchhhHHHHhHhhhcc-ccchHHHHHHHHHHHHHhhcCcHHHHH---HHHHHhcCC
Confidence 4444456788999999999999999887765543322211 347889999999988776666655443 33444433
Q ss_pred -CChhHHHHHHHHHHHH
Q psy11027 86 -PDSGVQSAAVNVVCEL 101 (252)
Q Consensus 86 -~d~~V~~~al~ll~ei 101 (252)
.++.|..+|+.++.+.
T Consensus 571 ~e~~EvRiaA~~~lm~~ 587 (618)
T PF01347_consen 571 TEDPEVRIAAYLILMRC 587 (618)
T ss_dssp TS-HHHHHHHHHHHHHT
T ss_pred CCChhHHHHHHHHHHhc
Confidence 5788999998777664
No 94
>KOG2160|consensus
Probab=82.11 E-value=4.7 Score=37.45 Aligned_cols=96 Identities=20% Similarity=0.262 Sum_probs=67.4
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcC-----chhHHHHhhhC-CCChhHHHHHHHHHHHHHhhCch---hhh
Q psy11027 40 NDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLE-DPDSGVQSAAVNVVCELARKNPK---NYL 110 (252)
Q Consensus 40 ~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~-----~~~~~l~~lL~-d~d~~V~~~al~ll~ei~~~~p~---~~~ 110 (252)
..+...+.++++-+|.+|+-.+..+.+.+|..-. .+...+.+.|+ |.+-++...|+..++.+.+.+|. .|.
T Consensus 127 ~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl 206 (342)
T KOG2160|consen 127 VPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFL 206 (342)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 4566688899999999999999999999997654 34577777776 56778889999999999998864 233
Q ss_pred hhHH--HHHHHhhc-CCChhHHHHHhhc
Q psy11027 111 SLAP--VFFKLMTT-SSNNWMLIKIIKL 135 (252)
Q Consensus 111 ~l~p--~l~~lL~~-~~~pwlqikiLkl 135 (252)
.+-. -+...|.+ ..++=+|+|.+-+
T Consensus 207 ~~~G~~~L~~vl~~~~~~~~lkrK~~~L 234 (342)
T KOG2160|consen 207 KLNGYQVLRDVLQSNNTSVKLKRKALFL 234 (342)
T ss_pred hcCCHHHHHHHHHcCCcchHHHHHHHHH
Confidence 2211 22334433 2345556665444
No 95
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=82.03 E-value=11 Score=29.82 Aligned_cols=67 Identities=21% Similarity=0.249 Sum_probs=42.4
Q ss_pred chHHHHHhcccCCHHHHHHHHHHhhc----CCc---hHhHH-HHHHHHHHhhcC---CChHHHHHHHHHHHHHHhhCC
Q psy11027 3 TTNMIRKDLNAQNQYDAGLALSALAC----FTS---TDLAR-DLANDIMMLLTS---TKPYLRKKAVLMMYKVFLKFP 69 (252)
Q Consensus 3 ~~N~i~kDL~s~n~~~~~LAL~~la~----i~~---~el~~-~l~~~V~~lL~s---~~p~VRKkA~lal~ki~~~~P 69 (252)
+...|+|=|+++||.++-+||..+-. -|. .+++. ....++.+++.. .++.||+|+.-.+..-....+
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 35677888888888888888877722 111 33333 455567777764 467788887766655444443
No 96
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=81.50 E-value=23 Score=30.33 Aligned_cols=88 Identities=18% Similarity=0.130 Sum_probs=59.3
Q ss_pred HHhhcCCchHhHHHHHHH---------------HHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhCCCCh
Q psy11027 24 SALACFTSTDLARDLAND---------------IMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDS 88 (252)
Q Consensus 24 ~~la~i~~~el~~~l~~~---------------V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~d~d~ 88 (252)
..+.++..-+.++.+++. +.+...|.+.+.||.|+.+..+. .+..+ ....+.-+..++.|++.
T Consensus 87 ~~l~~~~~Wd~vD~~~~~i~g~~~~~~~~~~~~l~~W~~s~~~W~rR~ai~~~l~~-~~~~~-~~~l~~~~~~~~~d~e~ 164 (208)
T cd07064 87 ELITTKSWWDTVDSLAKVVGGILLADYPEFEPVMDEWSTDENFWLRRTAILHQLKY-KEKTD-TDLLFEIILANLGSKEF 164 (208)
T ss_pred HHHcCCchHHHHHHHHHHHhHHHHhCChhHHHHHHHHHcCCcHHHHHHHHHHHHHH-HHccC-HHHHHHHHHHhCCChHH
Confidence 344555566666554443 34444678899999999987663 33344 23445667778888888
Q ss_pred hHHHHHHHHHHHHHhhCchhhhhhH
Q psy11027 89 GVQSAAVNVVCELARKNPKNYLSLA 113 (252)
Q Consensus 89 ~V~~~al~ll~ei~~~~p~~~~~l~ 113 (252)
.|..+.-=++-++++.+|+-...++
T Consensus 165 fI~KAiGW~LRe~~k~d~~~V~~fl 189 (208)
T cd07064 165 FIRKAIGWALREYSKTNPDWVRDFV 189 (208)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHH
Confidence 8888888899999999987444333
No 97
>KOG1242|consensus
Probab=80.14 E-value=67 Score=32.01 Aligned_cols=106 Identities=18% Similarity=0.170 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHh-hcCC--chHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCC-CcCchh-HHHHhhhCC--CC
Q psy11027 15 NQYDAGLALSAL-ACFT--STDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPD-ALRPAF-PRLKEKLED--PD 87 (252)
Q Consensus 15 n~~~~~LAL~~l-a~i~--~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd-~l~~~~-~~l~~lL~d--~d 87 (252)
|....++|..+. +++| .+.....+.+.|....++..++||..|..|+-.+.+..|. .++.+. +.+..++.+ +.
T Consensus 191 ~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrt 270 (569)
T KOG1242|consen 191 NREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRT 270 (569)
T ss_pred cHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhh
Confidence 344455554444 3333 2333445788889999999999999999999888877665 444444 444455545 33
Q ss_pred hhHHHHHHHHHHHHHhhCchh----hhhhHHHHHHHhhcC
Q psy11027 88 SGVQSAAVNVVCELARKNPKN----YLSLAPVFFKLMTTS 123 (252)
Q Consensus 88 ~~V~~~al~ll~ei~~~~p~~----~~~l~p~l~~lL~~~ 123 (252)
... ++.++--++...|+. ...++|.+.+.|.++
T Consensus 271 K~a---slellg~m~~~ap~qLs~~lp~iiP~lsevl~DT 307 (569)
T KOG1242|consen 271 KMA---SLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDT 307 (569)
T ss_pred HHH---HHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccC
Confidence 333 333333333333442 345677777777653
No 98
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=79.86 E-value=14 Score=29.31 Aligned_cols=79 Identities=15% Similarity=0.153 Sum_probs=53.0
Q ss_pred HHHHHHHHHhhCCCCcCchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhhhh------hHHHHHHHhhc--CCChhH
Q psy11027 57 AVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLS------LAPVFFKLMTT--SSNNWM 128 (252)
Q Consensus 57 A~lal~ki~~~~Pd~l~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~~------l~p~l~~lL~~--~~~pwl 128 (252)
+.+.+.=+++..++........|++.|.++||.|...|+.++..+.+.-.+.|+. +...+++++.+ .+++=.
T Consensus 20 ~il~icd~I~~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~V 99 (133)
T cd03561 20 LNLELCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKV 99 (133)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHH
Confidence 3444444555555555667788899999999999999999999998765555543 22345555554 345556
Q ss_pred HHHHhhc
Q psy11027 129 LIKIIKL 135 (252)
Q Consensus 129 qikiLkl 135 (252)
+-|++.+
T Consensus 100 k~kil~l 106 (133)
T cd03561 100 REKALEL 106 (133)
T ss_pred HHHHHHH
Confidence 6666665
No 99
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=79.46 E-value=2.7 Score=34.97 Aligned_cols=73 Identities=14% Similarity=0.048 Sum_probs=56.6
Q ss_pred HHhcccCCHHHHHHHHHHhhcCCch-HhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHH
Q psy11027 8 RKDLNAQNQYDAGLALSALACFTST-DLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLK 80 (252)
Q Consensus 8 ~kDL~s~n~~~~~LAL~~la~i~~~-el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~ 80 (252)
.+=..|+|++.+-.|.-++...... .-.+.+...+..++.+.+.||||...-++..+++++|+.+..+.+...
T Consensus 111 ~~w~~s~~~~~rR~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~~~~ 184 (197)
T cd06561 111 EEWAKSENEWVRRAAIVLLLRLIKKETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFLEKNG 184 (197)
T ss_pred HHHHhCCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Confidence 3345789999999998888765543 445557777777778899999999999999999999998777664433
No 100
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=79.11 E-value=4.9 Score=32.16 Aligned_cols=61 Identities=20% Similarity=0.395 Sum_probs=41.5
Q ss_pred chHHHHHhcccCCHHHHHHHHHHhhcC---Cc----hHh-HHHHHHHHHHhhcCC--ChH--HHHHHHHHHHH
Q psy11027 3 TTNMIRKDLNAQNQYDAGLALSALACF---TS----TDL-ARDLANDIMMLLTST--KPY--LRKKAVLMMYK 63 (252)
Q Consensus 3 ~~N~i~kDL~s~n~~~~~LAL~~la~i---~~----~el-~~~l~~~V~~lL~s~--~p~--VRKkA~lal~k 63 (252)
+...|+|-|.++||.++-+||+.+-.+ ++ .++ .+.+..++.+++.++ .+. ||+|+.-.+..
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~ 115 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQE 115 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHH
Confidence 457899999999999999999887221 12 222 224667788877643 333 88888765543
No 101
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=78.95 E-value=23 Score=28.17 Aligned_cols=80 Identities=19% Similarity=0.296 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhhCCCCcCchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhhhh------hHHHHHHHhhc-CCChh-
Q psy11027 56 KAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLS------LAPVFFKLMTT-SSNNW- 127 (252)
Q Consensus 56 kA~lal~ki~~~~Pd~l~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~~------l~p~l~~lL~~-~~~pw- 127 (252)
-+.+-+.-..+..++........|++.|.+++|.|..-|+.++..+.+.-...|+. +...+.++.++ ...|+
T Consensus 24 ~~~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~ 103 (140)
T PF00790_consen 24 SLILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPET 103 (140)
T ss_dssp HHHHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHS
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchh
Confidence 34444555556665555666777889999999999999999999998865555533 44555555554 34455
Q ss_pred -HHHHHhhc
Q psy11027 128 -MLIKIIKL 135 (252)
Q Consensus 128 -lqikiLkl 135 (252)
.+-|++.+
T Consensus 104 ~Vk~k~l~l 112 (140)
T PF00790_consen 104 PVKEKILEL 112 (140)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 77777776
No 102
>KOG1240|consensus
Probab=78.80 E-value=5.9 Score=42.40 Aligned_cols=65 Identities=17% Similarity=0.309 Sum_probs=54.7
Q ss_pred HHHHhcccCCHHHHHHHHHHhhcCCchHhHH-----HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCC
Q psy11027 6 MIRKDLNAQNQYDAGLALSALACFTSTDLAR-----DLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPD 70 (252)
Q Consensus 6 ~i~kDL~s~n~~~~~LAL~~la~i~~~el~~-----~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd 70 (252)
.+++-|.++.|++..-||.+++.+..-++.+ ++..+|..+|.|++.+||+.++.-++-+++.-.+
T Consensus 660 Ll~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 660 LLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSA 729 (1431)
T ss_pred HHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhh
Confidence 4678899999999999999998766544444 5888999999999999999999988888887654
No 103
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=78.79 E-value=14 Score=29.84 Aligned_cols=71 Identities=14% Similarity=0.172 Sum_probs=49.2
Q ss_pred HhhCCCCcCchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhhh------hhHHHHHHHhhcCCChhHHHHHhhc
Q psy11027 65 FLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL------SLAPVFFKLMTTSSNNWMLIKIIKL 135 (252)
Q Consensus 65 ~~~~Pd~l~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~------~l~p~l~~lL~~~~~pwlqikiLkl 135 (252)
++..++........|++.|.++||.|..-|+.++..+.+.-.+.|+ .+...+.+++....++=.+-|++.+
T Consensus 28 I~~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~l 104 (144)
T cd03568 28 VKSDENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREV 104 (144)
T ss_pred HhcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence 3333433445566788889999999999999999999876565554 3445566666654566666677666
No 104
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=77.30 E-value=91 Score=32.00 Aligned_cols=79 Identities=13% Similarity=0.162 Sum_probs=48.5
Q ss_pred chhhHHHHHhcCCCcchhHHH-H----HHHh----hHHHHHHHHHHHHHHHhhccChhHHHHHHHhhhhccCCccchHHH
Q psy11027 159 SLAPVFFKLMTTSSNNWMLIK-I----IKLV----LYAVLYAAAWICGEFREHLDSPRATLEAMTRRGLSLLPGHIQAVY 229 (252)
Q Consensus 159 ~l~~~l~~lL~~~~nN~~~i~-l----ikl~----~~e~l~~~~~iv~~~~~~l~~~~~~~~~~l~~~i~~l~~~~~~~~ 229 (252)
|+.+.+-.+|..+..+-.+|- + -+++ +-+.+..-..+++-+++.+.+...-++.+=-.-.-.+.+++..|.
T Consensus 576 gli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~ 655 (708)
T PF05804_consen 576 GLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWA 655 (708)
T ss_pred ChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence 344555566655555544443 1 1111 445554446788899999999887766664444555668888888
Q ss_pred HHHHHHHH
Q psy11027 230 VQNMLKIL 237 (252)
Q Consensus 230 ~~~~~k~~ 237 (252)
-+.-..=|
T Consensus 656 ~ri~~~kF 663 (708)
T PF05804_consen 656 ERIRREKF 663 (708)
T ss_pred HHhhHHHH
Confidence 77655444
No 105
>KOG1241|consensus
Probab=77.11 E-value=72 Score=32.92 Aligned_cols=93 Identities=23% Similarity=0.237 Sum_probs=73.3
Q ss_pred CHHHH-HHHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHh-hCCCCc----CchhHHHHhhhCCCCh
Q psy11027 15 NQYDA-GLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFL-KFPDAL----RPAFPRLKEKLEDPDS 88 (252)
Q Consensus 15 n~~~~-~LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~-~~Pd~l----~~~~~~l~~lL~d~d~ 88 (252)
||.-. |.-|...+.....+|.+.+.+.|.+-+.+++-.-|-.|++|...+.. .+|+-+ ....|.+..++.|+..
T Consensus 341 np~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl 420 (859)
T KOG1241|consen 341 NPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSL 420 (859)
T ss_pred cHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchh
Confidence 44433 33477778899999999999999999999999999999999988763 233322 3456888899999999
Q ss_pred hHHHHHHHHHHHHHhhCch
Q psy11027 89 GVQSAAVNVVCELARKNPK 107 (252)
Q Consensus 89 ~V~~~al~ll~ei~~~~p~ 107 (252)
.|.-++--.+..++...|+
T Consensus 421 ~VkdTaAwtlgrI~d~l~e 439 (859)
T KOG1241|consen 421 WVKDTAAWTLGRIADFLPE 439 (859)
T ss_pred hhcchHHHHHHHHHhhchh
Confidence 9988888888888887775
No 106
>KOG1248|consensus
Probab=76.57 E-value=14 Score=39.34 Aligned_cols=90 Identities=19% Similarity=0.206 Sum_probs=74.8
Q ss_pred hcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcC-----chhHHHHhhhCCCChhHHHHHHHHHHHH
Q psy11027 27 ACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCEL 101 (252)
Q Consensus 27 a~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~-----~~~~~l~~lL~d~d~~V~~~al~ll~ei 101 (252)
.++.+.+..+.+...|.-.+.++++.++|.|+-.+..+..+.|+... ...+.+..++.|..-.+....-.++.-+
T Consensus 817 ~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekL 896 (1176)
T KOG1248|consen 817 KNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKL 896 (1176)
T ss_pred hccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 77889999999999999999999999999999999889999998654 2456777777788888999998898888
Q ss_pred HhhC-chhhhhhHHHH
Q psy11027 102 ARKN-PKNYLSLAPVF 116 (252)
Q Consensus 102 ~~~~-p~~~~~l~p~l 116 (252)
+++. ++..+++.|..
T Consensus 897 irkfg~~eLe~~~pee 912 (1176)
T KOG1248|consen 897 IRKFGAEELESFLPEE 912 (1176)
T ss_pred HHHhCHHHHHhhCHHH
Confidence 8875 55566677743
No 107
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=76.33 E-value=3.8 Score=35.99 Aligned_cols=59 Identities=17% Similarity=0.261 Sum_probs=44.5
Q ss_pred hhcCCChHHHHHHHHHHHHHHhhC------CCCcCchh-------HHHHhhhCCCChhHHHHHHHHHHHHHh
Q psy11027 45 LLTSTKPYLRKKAVLMMYKVFLKF------PDALRPAF-------PRLKEKLEDPDSGVQSAAVNVVCELAR 103 (252)
Q Consensus 45 lL~s~~p~VRKkA~lal~ki~~~~------Pd~l~~~~-------~~l~~lL~d~d~~V~~~al~ll~ei~~ 103 (252)
++.+.+|.|-|+|+.|...+|+.. .+.....| +++.+++.+.++||-.+++.++..+..
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl 72 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVIL 72 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 567889999999999999999762 22222333 456667888899999999999988764
No 108
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=76.03 E-value=18 Score=36.73 Aligned_cols=81 Identities=23% Similarity=0.257 Sum_probs=58.0
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcC-----chhHHHHhhh-CCCChhHHHHHHHHHHHHHhhCchhhhhh
Q psy11027 39 ANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKL-EDPDSGVQSAAVNVVCELARKNPKNYLSL 112 (252)
Q Consensus 39 ~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~-----~~~~~l~~lL-~d~d~~V~~~al~ll~ei~~~~p~~~~~l 112 (252)
...+-+.+. ++.-|..|..-+.++.+..|.-+. ..++.+.+.| .|.+..|+.+|+.++.-+..+-|......
T Consensus 72 ~~~l~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~ 149 (668)
T PF04388_consen 72 FDKLNDYFV--KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPH 149 (668)
T ss_pred HHHHHHHHc--CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHH
Confidence 333344443 456778888888899999887543 3455444444 59999999999999999998888766667
Q ss_pred HHHHHHHhh
Q psy11027 113 APVFFKLMT 121 (252)
Q Consensus 113 ~p~l~~lL~ 121 (252)
.|.++.+..
T Consensus 150 L~~Lf~If~ 158 (668)
T PF04388_consen 150 LPDLFNIFG 158 (668)
T ss_pred HHHHHHHHH
Confidence 777776543
No 109
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=76.01 E-value=20 Score=28.91 Aligned_cols=77 Identities=18% Similarity=0.235 Sum_probs=51.8
Q ss_pred HHHHHHHhhCCCCcCchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhhh------hhHHHHHHHhhc-----CCChh
Q psy11027 59 LMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL------SLAPVFFKLMTT-----SSNNW 127 (252)
Q Consensus 59 lal~ki~~~~Pd~l~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~------~l~p~l~~lL~~-----~~~pw 127 (252)
+-+.=.++..|+........+++.|.++||.|..-|+.++..+.+.=...|+ .+...+++++.. .+++=
T Consensus 23 leicD~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~ 102 (139)
T cd03567 23 QAFCEQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEK 102 (139)
T ss_pred HHHHHHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHH
Confidence 3334444555555455667788999999999999999999998875444443 344566777642 23555
Q ss_pred HHHHHhhc
Q psy11027 128 MLIKIIKL 135 (252)
Q Consensus 128 lqikiLkl 135 (252)
.+-|++.+
T Consensus 103 Vk~kil~l 110 (139)
T cd03567 103 VKTKIIEL 110 (139)
T ss_pred HHHHHHHH
Confidence 66677766
No 110
>KOG1824|consensus
Probab=75.96 E-value=30 Score=36.55 Aligned_cols=114 Identities=24% Similarity=0.233 Sum_probs=82.6
Q ss_pred HHHHhcccCCHHHHHHHHHHhhcCC--chHhHHHHHHHHHHhhcC----------------------CChHHHHHHHHHH
Q psy11027 6 MIRKDLNAQNQYDAGLALSALACFT--STDLARDLANDIMMLLTS----------------------TKPYLRKKAVLMM 61 (252)
Q Consensus 6 ~i~kDL~s~n~~~~~LAL~~la~i~--~~el~~~l~~~V~~lL~s----------------------~~p~VRKkA~lal 61 (252)
.+-+=+.+++..++-.||..+.+.. .|.+++++.+++..++-+ ..--+||.|.-|+
T Consensus 1011 ~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcm 1090 (1233)
T KOG1824|consen 1011 DFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECM 1090 (1233)
T ss_pred HHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHH
Confidence 4556678999999999999997755 689999999998887743 1234789999999
Q ss_pred HHHHhhCCCCcC--chhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhhhhhHHHHHHHh
Q psy11027 62 YKVFLKFPDALR--PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM 120 (252)
Q Consensus 62 ~ki~~~~Pd~l~--~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~~l~p~l~~lL 120 (252)
+.+....-|.+. .|.+....-|+|. +.+-+-....+..++..-|.....-+..++.-|
T Consensus 1091 ytLLdscld~~dit~Fl~~~~~GL~Dh-ydiKmlt~l~l~rLa~lcPs~VlqrlD~l~EpL 1150 (1233)
T KOG1824|consen 1091 YTLLDSCLDRLDITEFLNHVEDGLEDH-YDIKMLTFLMLARLADLCPSAVLQRLDRLVEPL 1150 (1233)
T ss_pred HHHHHhhhhhccHHHHHHHHHhhcchh-hHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHH
Confidence 999887777765 4667777778776 666666666666677666765544444444433
No 111
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=75.92 E-value=21 Score=28.83 Aligned_cols=75 Identities=17% Similarity=0.179 Sum_probs=50.1
Q ss_pred HHHHHhhCCCCcCchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhhh------hhHHHHHHHhhcCCChhHHHHHhh
Q psy11027 61 MYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL------SLAPVFFKLMTTSSNNWMLIKIIK 134 (252)
Q Consensus 61 l~ki~~~~Pd~l~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~------~l~p~l~~lL~~~~~pwlqikiLk 134 (252)
+.-.++..++.-.+....+++.|.++|+.|..-|+.++..+.+.=...|+ .+...+.+++...++|=.+-|++.
T Consensus 28 icD~In~~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~ 107 (142)
T cd03569 28 ICDMIRSKDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILE 107 (142)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHH
Confidence 33344444444446677888999999999999999999888875444443 344555666655455556667766
Q ss_pred c
Q psy11027 135 L 135 (252)
Q Consensus 135 l 135 (252)
+
T Consensus 108 l 108 (142)
T cd03569 108 L 108 (142)
T ss_pred H
Confidence 6
No 112
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=75.90 E-value=20 Score=28.39 Aligned_cols=77 Identities=17% Similarity=0.247 Sum_probs=50.9
Q ss_pred HHHHHHHhhCCCCcCchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhhhh------hHHHHHHHhhcC-CChhHHHH
Q psy11027 59 LMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLS------LAPVFFKLMTTS-SNNWMLIK 131 (252)
Q Consensus 59 lal~ki~~~~Pd~l~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~~------l~p~l~~lL~~~-~~pwlqik 131 (252)
+.+.=.++..++........+++.|.++||.|...|+.++..+.+.-.+.|+. +...+.++++.. ..|..+-|
T Consensus 22 l~icD~i~~~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~k 101 (133)
T smart00288 22 LEICDLINSTPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKR 101 (133)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHH
Confidence 33334445555555566677889999999999999999999988765554532 334555555543 34556667
Q ss_pred Hhhc
Q psy11027 132 IIKL 135 (252)
Q Consensus 132 iLkl 135 (252)
++.+
T Consensus 102 il~l 105 (133)
T smart00288 102 ILEL 105 (133)
T ss_pred HHHH
Confidence 7666
No 113
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=74.82 E-value=33 Score=34.75 Aligned_cols=120 Identities=16% Similarity=0.184 Sum_probs=80.9
Q ss_pred cchHHHHHhcccCCHHHHHHHHHHhhcCC-------chHhHHHHHHHHHHhhcCCChHHHH---HHHHHHHHHHhhCC--
Q psy11027 2 LTTNMIRKDLNAQNQYDAGLALSALACFT-------STDLARDLANDIMMLLTSTKPYLRK---KAVLMMYKVFLKFP-- 69 (252)
Q Consensus 2 L~~N~i~kDL~s~n~~~~~LAL~~la~i~-------~~el~~~l~~~V~~lL~s~~p~VRK---kA~lal~ki~~~~P-- 69 (252)
+++.++.|-|+|+.|.++--|+..+|++. ..++...+-.-+.+.+....|-+-- +|..|++...+...
T Consensus 604 ~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mq 683 (975)
T COG5181 604 MIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQ 683 (975)
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccC
Confidence 35788889999999999888888876643 3555566666777777766555544 34444444444331
Q ss_pred CCcCchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCch-----hhhhhHHHHHHHhh
Q psy11027 70 DALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK-----NYLSLAPVFFKLMT 121 (252)
Q Consensus 70 d~l~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~-----~~~~l~p~l~~lL~ 121 (252)
.-+....|++...|..++.-|+.+++.++-.||...|+ .|-.+--.++..|+
T Consensus 684 pPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lk 740 (975)
T COG5181 684 PPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLK 740 (975)
T ss_pred CchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHH
Confidence 11334567777788889999999999999999988876 34444445555554
No 114
>KOG4535|consensus
Probab=74.57 E-value=19 Score=35.33 Aligned_cols=94 Identities=15% Similarity=0.234 Sum_probs=59.9
Q ss_pred cccCCHHHHHHHHHHhhcCC--chHh---------------HHHHHHHHH---Hh----h-cCCChHHHHHHHHHHHHHH
Q psy11027 11 LNAQNQYDAGLALSALACFT--STDL---------------ARDLANDIM---ML----L-TSTKPYLRKKAVLMMYKVF 65 (252)
Q Consensus 11 L~s~n~~~~~LAL~~la~i~--~~el---------------~~~l~~~V~---~l----L-~s~~p~VRKkA~lal~ki~ 65 (252)
|+++|+-.+++||+..+.+- +..+ +-.++-.|. ++ + ...+|.+--...-|+.-+.
T Consensus 56 lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv 135 (728)
T KOG4535|consen 56 LKDPSPKTRACALQVLSAILEGSKQFLSVAEDTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLV 135 (728)
T ss_pred cCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 67899999999999886632 2111 111222221 11 1 1233444444555666666
Q ss_pred hhCC-CCcC-----chhHHHHhhhCCCChhHHHHHHHHHHHHHhh
Q psy11027 66 LKFP-DALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELARK 104 (252)
Q Consensus 66 ~~~P-d~l~-----~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~ 104 (252)
...| +-++ .+|+.+++++.++|+.|..+++.++.-+...
T Consensus 136 ~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t 180 (728)
T KOG4535|consen 136 SNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVST 180 (728)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhc
Confidence 6666 3333 5789999999999999999999998877653
No 115
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=73.57 E-value=17 Score=28.82 Aligned_cols=66 Identities=24% Similarity=0.381 Sum_probs=44.9
Q ss_pred chHHHHHhcccCCHHHHHHHHHHhhc----CCc---hHhHH-HHHHHHHHhhcCC--ChHHHHHHHHHHHHHHhhC
Q psy11027 3 TTNMIRKDLNAQNQYDAGLALSALAC----FTS---TDLAR-DLANDIMMLLTST--KPYLRKKAVLMMYKVFLKF 68 (252)
Q Consensus 3 ~~N~i~kDL~s~n~~~~~LAL~~la~----i~~---~el~~-~l~~~V~~lL~s~--~p~VRKkA~lal~ki~~~~ 68 (252)
++..|+|=|+++||.++-.||..+-. -|. .+++. .+..++.+++++. .+.||+|+.-.+..-....
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999988822 221 33433 4667777888763 3448888877665544333
No 116
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=72.70 E-value=76 Score=28.92 Aligned_cols=119 Identities=19% Similarity=0.216 Sum_probs=68.4
Q ss_pred hHHHHHhcccCCHHHHHHHHHHhhcC--------CchHhHHHHHHHHHHhhcCCC--hHHHHHHHHHHHH--HH-hhCCC
Q psy11027 4 TNMIRKDLNAQNQYDAGLALSALACF--------TSTDLARDLANDIMMLLTSTK--PYLRKKAVLMMYK--VF-LKFPD 70 (252)
Q Consensus 4 ~N~i~kDL~s~n~~~~~LAL~~la~i--------~~~el~~~l~~~V~~lL~s~~--p~VRKkA~lal~k--i~-~~~Pd 70 (252)
+..+.|-++.+....+.+|++.++=+ ...++.+.+.+.+.+.+.+++ +-+|-.++.|+.- ++ -.+++
T Consensus 88 ~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~ 167 (309)
T PF05004_consen 88 LDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEE 167 (309)
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChh
Confidence 34667777777777788887766432 247778888888888888754 4454444434433 33 12333
Q ss_pred CcCchhHHHH---hh--hC-C---------CChhHHHHHHHHHHHHHhhCch-----hhhhhHHHHHHHhhc
Q psy11027 71 ALRPAFPRLK---EK--LE-D---------PDSGVQSAAVNVVCELARKNPK-----NYLSLAPVFFKLMTT 122 (252)
Q Consensus 71 ~l~~~~~~l~---~l--L~-d---------~d~~V~~~al~ll~ei~~~~p~-----~~~~l~p~l~~lL~~ 122 (252)
.+....+.+. .. .+ | +++.|+.+|+..-.-++..-|. .+....|.+..+|.+
T Consensus 168 ~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s 239 (309)
T PF05004_consen 168 ETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDS 239 (309)
T ss_pred HHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcC
Confidence 3331112221 11 11 1 2467999998866666554443 344566777777764
No 117
>KOG1943|consensus
Probab=72.18 E-value=16 Score=38.69 Aligned_cols=91 Identities=15% Similarity=0.240 Sum_probs=74.0
Q ss_pred chHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCC-CCcCchhHHHHhhhCC-CChhHHHHHHHHHHHHHhhC---
Q psy11027 31 STDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFP-DALRPAFPRLKEKLED-PDSGVQSAAVNVVCELARKN--- 105 (252)
Q Consensus 31 ~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~P-d~l~~~~~~l~~lL~d-~d~~V~~~al~ll~ei~~~~--- 105 (252)
.||+.+.+..++.+.+++++..||=.||=.+.|+-...| +++...+..+.++++- .+++.-..|+-.+-|++..-
T Consensus 335 v~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLl 414 (1133)
T KOG1943|consen 335 VPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLL 414 (1133)
T ss_pred cHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcc
Confidence 468889999999999999999999999999999999998 4445566666666664 35888889999999999753
Q ss_pred chhhhhhHHHHHHHhh
Q psy11027 106 PKNYLSLAPVFFKLMT 121 (252)
Q Consensus 106 p~~~~~l~p~l~~lL~ 121 (252)
|+.+..++|.+.+-|.
T Consensus 415 ps~l~dVvplI~kaL~ 430 (1133)
T KOG1943|consen 415 PSLLEDVVPLILKALH 430 (1133)
T ss_pred hHHHHHHHHHHHHHhh
Confidence 6677788888776554
No 118
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=71.53 E-value=14 Score=28.23 Aligned_cols=57 Identities=7% Similarity=0.117 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhhCCCCcCchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhhhh
Q psy11027 55 KKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLS 111 (252)
Q Consensus 55 KkA~lal~ki~~~~Pd~l~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~~ 111 (252)
.+...-+..+.+.+|+........+.+.|.++++.|+.-|+.++..+.+.-.+.|..
T Consensus 18 ~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~ 74 (115)
T cd00197 18 WPLIMEICDLINETNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQ 74 (115)
T ss_pred HHHHHHHHHHHHCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHH
Confidence 355555666666677777778889999999999999999999999999876655543
No 119
>KOG1242|consensus
Probab=71.40 E-value=7.6 Score=38.45 Aligned_cols=73 Identities=25% Similarity=0.278 Sum_probs=51.6
Q ss_pred HHHHHHHHHhhcCC---ch---HhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHh--hCCCCcCchhHHHHhhhCCCCh
Q psy11027 17 YDAGLALSALACFT---ST---DLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFL--KFPDALRPAFPRLKEKLEDPDS 88 (252)
Q Consensus 17 ~~~~LAL~~la~i~---~~---el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~--~~Pd~l~~~~~~l~~lL~d~d~ 88 (252)
....-|+..+++++ .. ...+++.|.+.+.|.+++|-|||.|.-|+.++-. .+|| +..+.|.+.+-+.|+.-
T Consensus 269 rtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I~~~ip~Lld~l~dp~~ 347 (569)
T KOG1242|consen 269 RTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-IQKIIPTLLDALADPSC 347 (569)
T ss_pred hhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-HHHHHHHHHHHhcCccc
Confidence 34445555555433 22 2244788889999999999999999999998765 4555 55667888888888773
Q ss_pred hH
Q psy11027 89 GV 90 (252)
Q Consensus 89 ~V 90 (252)
.+
T Consensus 348 ~~ 349 (569)
T KOG1242|consen 348 YT 349 (569)
T ss_pred ch
Confidence 33
No 120
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=71.13 E-value=21 Score=28.82 Aligned_cols=60 Identities=15% Similarity=0.340 Sum_probs=43.2
Q ss_pred hHHHHHhcccCCHHHHHHHHHHh----hcCCc---hHhH-HHHHHHHHHhhcC------CChHHHHHHHHHHHH
Q psy11027 4 TNMIRKDLNAQNQYDAGLALSAL----ACFTS---TDLA-RDLANDIMMLLTS------TKPYLRKKAVLMMYK 63 (252)
Q Consensus 4 ~N~i~kDL~s~n~~~~~LAL~~l----a~i~~---~el~-~~l~~~V~~lL~s------~~p~VRKkA~lal~k 63 (252)
+-.|+|=++++||.++-+||..+ -|-|. .+++ +++..++.++++. +++.||+|....+..
T Consensus 40 ~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~ 113 (139)
T cd03567 40 VRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYS 113 (139)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHH
Confidence 45688889999999999999777 22222 4444 4577788888853 578899988766543
No 121
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=71.04 E-value=76 Score=28.25 Aligned_cols=63 Identities=22% Similarity=0.301 Sum_probs=43.2
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHhhCCC-CcC-chhHHHHhhhCC--CChhHHHHHHHHHHHHHh
Q psy11027 41 DIMMLLTSTKPYLRKKAVLMMYKVFLKFPD-ALR-PAFPRLKEKLED--PDSGVQSAAVNVVCELAR 103 (252)
Q Consensus 41 ~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd-~l~-~~~~~l~~lL~d--~d~~V~~~al~ll~ei~~ 103 (252)
...+.|+|.++.+|.||..++..+....|. .+. .-.+.+.+.+.+ .|+..+..++..+..+.+
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~ 69 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVK 69 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHh
Confidence 345678899999999999999999988883 343 223333333332 366666666887777774
No 122
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=70.73 E-value=19 Score=32.63 Aligned_cols=108 Identities=19% Similarity=0.304 Sum_probs=62.0
Q ss_pred cCCHHHHHHHHHHhhcCCc--hHhHH-----------HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCc----h
Q psy11027 13 AQNQYDAGLALSALACFTS--TDLAR-----------DLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRP----A 75 (252)
Q Consensus 13 s~n~~~~~LAL~~la~i~~--~el~~-----------~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~----~ 75 (252)
++++.++--.|+.++.+-. ++..+ ..+....+++.++++++.-+|+-.+..+....|..-.. .
T Consensus 68 ~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~ 147 (312)
T PF03224_consen 68 SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEA 147 (312)
T ss_dssp ---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHH
Confidence 6778888888888866442 22221 13455666778899999999999999998877764432 3
Q ss_pred hH----HHHhhhCCCChhHHHHHHHHHHHHHhhCc--hhh--hhhHHHHHHHh
Q psy11027 76 FP----RLKEKLEDPDSGVQSAAVNVVCELARKNP--KNY--LSLAPVFFKLM 120 (252)
Q Consensus 76 ~~----~l~~lL~d~d~~V~~~al~ll~ei~~~~p--~~~--~~l~p~l~~lL 120 (252)
.+ -+.+.++.++.++...|+.++.++.+..+ ..| ...++.+.++|
T Consensus 148 l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL 200 (312)
T PF03224_consen 148 LPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDIL 200 (312)
T ss_dssp HHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHH
Confidence 34 44444444667788888999999885321 122 23556666666
No 123
>KOG2213|consensus
Probab=70.19 E-value=7 Score=37.05 Aligned_cols=81 Identities=16% Similarity=0.252 Sum_probs=62.7
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhhhhhHHHHHH
Q psy11027 39 ANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFK 118 (252)
Q Consensus 39 ~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~~l~p~l~~ 118 (252)
+..|.+.... +.--|+-|.--+.|.|+..|++....++.=.++.+|.|.||.--|+--+.-.|+. +......|.+++
T Consensus 27 y~~il~~~k~-~~k~k~lasq~ip~~fk~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~--d~~~rv~d~l~q 103 (460)
T KOG2213|consen 27 YEGILKAVKG-TSKEKRLASQFIPRFFKHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG--DALSRVNDVLVQ 103 (460)
T ss_pred HHHHHHHhhc-chHHHHHHHHHHHHHHhhCchhhhHHHHhhhccccccchhhHHHHHhccchhccC--chhhhhHHHHHH
Confidence 3444554443 3457888999999999999999999998888888999999999999888888875 444456677777
Q ss_pred Hhhc
Q psy11027 119 LMTT 122 (252)
Q Consensus 119 lL~~ 122 (252)
+|.+
T Consensus 104 LLnk 107 (460)
T KOG2213|consen 104 LLNK 107 (460)
T ss_pred HHHH
Confidence 7653
No 124
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=70.18 E-value=30 Score=28.42 Aligned_cols=80 Identities=23% Similarity=0.192 Sum_probs=60.0
Q ss_pred chHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhC-CCCcC----chhHHHHhhhCCC-ChhHHHHHHHHHHHHHh-
Q psy11027 31 STDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKF-PDALR----PAFPRLKEKLEDP-DSGVQSAAVNVVCELAR- 103 (252)
Q Consensus 31 ~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~-Pd~l~----~~~~~l~~lL~d~-d~~V~~~al~ll~ei~~- 103 (252)
.......+...+.+++++++++-|=.|+.-+.-..+.+ +|.+. .+...+.+.|+.+ .+.+..+++..+..+..
T Consensus 19 ~~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 19 SKSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred CHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 45566678899999999999999998888888888887 78773 3568888999865 55667777777776654
Q ss_pred --hCchhhh
Q psy11027 104 --KNPKNYL 110 (252)
Q Consensus 104 --~~p~~~~ 110 (252)
..|+.-+
T Consensus 99 ~~~~p~l~R 107 (165)
T PF08167_consen 99 IRGKPTLTR 107 (165)
T ss_pred hcCCCchHH
Confidence 4466443
No 125
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=70.07 E-value=1.3e+02 Score=30.46 Aligned_cols=98 Identities=13% Similarity=0.269 Sum_probs=65.7
Q ss_pred chHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhhh
Q psy11027 31 STDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL 110 (252)
Q Consensus 31 ~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~ 110 (252)
+++..+.....+...|++++...|=.|.-.+-++-.++|+.+.-.-+.+.++.+|.|-.+..-|++.+..-- +.+...
T Consensus 297 ~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTG--t~e~id 374 (898)
T COG5240 297 GSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTG--TEETID 374 (898)
T ss_pred CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcC--chhhHH
Confidence 344444455666677778887788777777888888999988877788889999999888777766554332 223344
Q ss_pred hhHHHHHHHhhcCCChhHHH
Q psy11027 111 SLAPVFFKLMTTSSNNWMLI 130 (252)
Q Consensus 111 ~l~p~l~~lL~~~~~pwlqi 130 (252)
.++..+...++..+|.|-.+
T Consensus 375 rLv~~I~sfvhD~SD~FKiI 394 (898)
T COG5240 375 RLVNLIPSFVHDMSDGFKII 394 (898)
T ss_pred HHHHHHHHHHHhhccCceEE
Confidence 45544445555555666444
No 126
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=70.02 E-value=17 Score=28.70 Aligned_cols=69 Identities=23% Similarity=0.266 Sum_probs=53.0
Q ss_pred HHHHHHHHhh-cCCChHHHHHHHHHHHHHHhhCCCCcC-----chhHHHHhhhCCCChhHHHHHHHHHHHHHhhC
Q psy11027 37 DLANDIMMLL-TSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 105 (252)
Q Consensus 37 ~l~~~V~~lL-~s~~p~VRKkA~lal~ki~~~~Pd~l~-----~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~ 105 (252)
.+...+.++| ++.+|.+--.|+-=+..+.+.+|+.-. ..-+++.++++++|+.|.--|+..+..+..++
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 117 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVNN 117 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 4666777888 445788888888888999999998533 24589999999999999999999988876543
No 127
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=69.97 E-value=9 Score=23.55 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=12.1
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHH
Q psy11027 39 ANDIMMLLTSTKPYLRKKAVLMMY 62 (252)
Q Consensus 39 ~~~V~~lL~s~~p~VRKkA~lal~ 62 (252)
.+.+.++|.++++.+++.|+-|+.
T Consensus 14 i~~Lv~ll~~~~~~v~~~a~~al~ 37 (41)
T PF00514_consen 14 IPPLVQLLKSPDPEVQEEAAWALG 37 (41)
T ss_dssp HHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHH
Confidence 444555555555555555555443
No 128
>KOG2973|consensus
Probab=69.48 E-value=56 Score=30.25 Aligned_cols=63 Identities=24% Similarity=0.282 Sum_probs=39.8
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcC----chhHHHHhhhCCCChhHHHHHHHHHHHHHh
Q psy11027 39 ANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALR----PAFPRLKEKLEDPDSGVQSAAVNVVCELAR 103 (252)
Q Consensus 39 ~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~----~~~~~l~~lL~d~d~~V~~~al~ll~ei~~ 103 (252)
..++.+++.+.+|.|||.|+.-+.-+--.--..+. ...+.+.+++.|.+| ..-|+..+-.+++
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq 71 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQ 71 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHh
Confidence 35688999999999999998665543322111111 135678889999888 3444445555544
No 129
>KOG2062|consensus
Probab=69.45 E-value=20 Score=36.76 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=11.4
Q ss_pred CCChHHHHHHHHHHHHHHhhCCCC
Q psy11027 48 STKPYLRKKAVLMMYKVFLKFPDA 71 (252)
Q Consensus 48 s~~p~VRKkA~lal~ki~~~~Pd~ 71 (252)
+.+.-|||.|+.|+.-+.-++|+.
T Consensus 566 D~nDDVrRaAVialGFVl~~dp~~ 589 (929)
T KOG2062|consen 566 DVNDDVRRAAVIALGFVLFRDPEQ 589 (929)
T ss_pred ccchHHHHHHHHHheeeEecChhh
Confidence 344445555555554444444444
No 130
>KOG1020|consensus
Probab=68.56 E-value=19 Score=39.65 Aligned_cols=77 Identities=19% Similarity=0.229 Sum_probs=63.0
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcC--chhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhhhhhHH
Q psy11027 38 LANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALR--PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAP 114 (252)
Q Consensus 38 l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~--~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~~l~p 114 (252)
....|...+..+.+.+|-||.=|+..+...+|.++. +....+...++|+..+|.=+|+-++-...-.+|+.+.....
T Consensus 817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qyY~ 895 (1692)
T KOG1020|consen 817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQYYD 895 (1692)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHHHH
Confidence 456677777889999999999999999999999876 35678889999999999999999998776666764443333
No 131
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=68.36 E-value=10 Score=35.66 Aligned_cols=58 Identities=12% Similarity=0.106 Sum_probs=44.4
Q ss_pred hHHHHHhcc---cCCHHHHHHHHHHhhcCC---chHhHHHHHHHHHHhhcCCChHHHHHHHHHH
Q psy11027 4 TNMIRKDLN---AQNQYDAGLALSALACFT---STDLARDLANDIMMLLTSTKPYLRKKAVLMM 61 (252)
Q Consensus 4 ~N~i~kDL~---s~n~~~~~LAL~~la~i~---~~el~~~l~~~V~~lL~s~~p~VRKkA~lal 61 (252)
.+.+.-||+ +..|..++-|+.++..++ +++....+.+.+.++|.+++.-|+-=|+.|+
T Consensus 307 ~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 307 SQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 344556676 678999999999996655 5778888999999999999999999888874
No 132
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=68.34 E-value=37 Score=28.82 Aligned_cols=76 Identities=18% Similarity=0.177 Sum_probs=50.9
Q ss_pred HHHhhcC-CChHHHHHHHHHHHHHHhh-CCCCc----CchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhhhhhHHH
Q psy11027 42 IMMLLTS-TKPYLRKKAVLMMYKVFLK-FPDAL----RPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPV 115 (252)
Q Consensus 42 V~~lL~s-~~p~VRKkA~lal~ki~~~-~Pd~l----~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~~l~p~ 115 (252)
-.+.+.. ..|| |=-|..++..+.+. .++-+ +..+..+++-|+.+|+.|..+++.++..++...+..=..++|.
T Consensus 43 f~dGL~Et~~Py-~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPy 121 (183)
T PF10274_consen 43 FFDGLRETEHPY-RFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEALVPY 121 (183)
T ss_pred HHhhhhccCccH-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3344443 4454 45666677777777 66543 3456788999999999999999999999977665433344554
Q ss_pred HHH
Q psy11027 116 FFK 118 (252)
Q Consensus 116 l~~ 118 (252)
+-+
T Consensus 122 yrq 124 (183)
T PF10274_consen 122 YRQ 124 (183)
T ss_pred HHH
Confidence 333
No 133
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=68.29 E-value=12 Score=22.90 Aligned_cols=27 Identities=37% Similarity=0.490 Sum_probs=23.7
Q ss_pred hHHHHhhhCCCChhHHHHHHHHHHHHH
Q psy11027 76 FPRLKEKLEDPDSGVQSAAVNVVCELA 102 (252)
Q Consensus 76 ~~~l~~lL~d~d~~V~~~al~ll~ei~ 102 (252)
+|.|.++|.+.|+.|...|+..+..++
T Consensus 14 i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 14 IPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 477889999999999999999988876
No 134
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=68.04 E-value=21 Score=31.99 Aligned_cols=77 Identities=18% Similarity=0.165 Sum_probs=55.1
Q ss_pred hcCCchHhHH---HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCc----C------chhHHHHhhhC--------C
Q psy11027 27 ACFTSTDLAR---DLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDAL----R------PAFPRLKEKLE--------D 85 (252)
Q Consensus 27 a~i~~~el~~---~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l----~------~~~~~l~~lL~--------d 85 (252)
.....+++.+ -+.|.+..++.+.++.+|.+|+.++.++..+.|+.. . .+.+.+...|. +
T Consensus 106 ~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~ 185 (282)
T PF10521_consen 106 SQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPED 185 (282)
T ss_pred hcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCch
Confidence 3566666654 588999999999999999999999999999888654 1 12345555554 4
Q ss_pred CChhHHHHHHHHHHHHHh
Q psy11027 86 PDSGVQSAAVNVVCELAR 103 (252)
Q Consensus 86 ~d~~V~~~al~ll~ei~~ 103 (252)
..+.++..|..++..+++
T Consensus 186 ~s~~Ll~~ay~~L~~L~~ 203 (282)
T PF10521_consen 186 ESLELLQAAYPALLSLLK 203 (282)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 555666666666666654
No 135
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=67.79 E-value=32 Score=29.10 Aligned_cols=94 Identities=17% Similarity=0.213 Sum_probs=58.0
Q ss_pred ccCCHHHHHHHHHHhhcCC-------------------c-------hHhHHHHHHHHHHhhcC-CChHHHHHHHHHHHHH
Q psy11027 12 NAQNQYDAGLALSALACFT-------------------S-------TDLARDLANDIMMLLTS-TKPYLRKKAVLMMYKV 64 (252)
Q Consensus 12 ~s~n~~~~~LAL~~la~i~-------------------~-------~el~~~l~~~V~~lL~s-~~p~VRKkA~lal~ki 64 (252)
.|+++-+|+.|+++++.+- - ..+...+...+...+.+ .++.+---..=|+.-+
T Consensus 50 ~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~L 129 (182)
T PF13251_consen 50 KDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVL 129 (182)
T ss_pred cCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 4689999999999885511 0 11222333444444444 2333333333344333
Q ss_pred Hhh------CCCCcCchhHHHHhhhCCCChhHHHHHHHHHHHHHhhC
Q psy11027 65 FLK------FPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 105 (252)
Q Consensus 65 ~~~------~Pd~l~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~ 105 (252)
... .++++..++..++.++.++|+.|..+++.++.-+....
T Consensus 130 v~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 130 VQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 333 34556667889999999999999999999888776543
No 136
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=66.86 E-value=21 Score=27.71 Aligned_cols=49 Identities=12% Similarity=0.219 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHHhhC-CCCcCchhHHHHhhhCCCChhHHHHHHHHHHH
Q psy11027 51 PYLRKKAVLMMYKVFLKF-PDALRPAFPRLKEKLEDPDSGVQSAAVNVVCE 100 (252)
Q Consensus 51 p~VRKkA~lal~ki~~~~-Pd~l~~~~~~l~~lL~d~d~~V~~~al~ll~e 100 (252)
++||.|.+.++..+.+++ |+--+.+++.+.+.+.. ++.-.-.++.++..
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~ 51 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRI 51 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHH
Confidence 689999999999988665 88888888888888876 34444444444433
No 137
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=66.66 E-value=22 Score=33.41 Aligned_cols=99 Identities=13% Similarity=0.198 Sum_probs=76.1
Q ss_pred chHHHHHhcccCCHHHHHHHHHHh---hcC--CchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcC--ch
Q psy11027 3 TTNMIRKDLNAQNQYDAGLALSAL---ACF--TSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALR--PA 75 (252)
Q Consensus 3 ~~N~i~kDL~s~n~~~~~LAL~~l---a~i--~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~--~~ 75 (252)
++=++.||- .++..+--||+.+ -.+ +..++.+.+...+..+..+.+...|..|.-.+.-+.-.+|+++- ..
T Consensus 71 ii~SL~~~~--~~~~ER~QALkliR~~l~~~~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG 148 (371)
T PF14664_consen 71 IIRSLDRDN--KNDVEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGG 148 (371)
T ss_pred hHhhhcccC--CChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCC
Confidence 444566664 4566766776666 445 56788888999999999999999999999999999999999875 45
Q ss_pred hHHHHhhhCCCChhHHHHHHHHHHHHHh
Q psy11027 76 FPRLKEKLEDPDSGVQSAAVNVVCELAR 103 (252)
Q Consensus 76 ~~~l~~lL~d~d~~V~~~al~ll~ei~~ 103 (252)
+.-+.+.+.|..+.+..+.+..+..+..
T Consensus 149 ~~~L~~~l~d~~~~~~~~l~~~lL~lLd 176 (371)
T PF14664_consen 149 IRVLLRALIDGSFSISESLLDTLLYLLD 176 (371)
T ss_pred HHHHHHHHHhccHhHHHHHHHHHHHHhC
Confidence 7777777777766666677777777764
No 138
>KOG1241|consensus
Probab=66.06 E-value=27 Score=35.88 Aligned_cols=99 Identities=15% Similarity=0.235 Sum_probs=76.2
Q ss_pred HHHHhcccCCHHHHHHHHHHhhcCC-chH------hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCc---h
Q psy11027 6 MIRKDLNAQNQYDAGLALSALACFT-STD------LARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRP---A 75 (252)
Q Consensus 6 ~i~kDL~s~n~~~~~LAL~~la~i~-~~e------l~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~---~ 75 (252)
.|+.-++++|-..+-.|.=+.|++- .|| +.....+.+.++|++++-.||..++-++.|+....|+...+ .
T Consensus 368 Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l 447 (859)
T KOG1241|consen 368 FIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELL 447 (859)
T ss_pred HHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhh
Confidence 4566788999888888888887754 333 45567788999999999999999999999999999987754 2
Q ss_pred hHHHHhhhC--CCChhHHHHHHHHHHHHHhh
Q psy11027 76 FPRLKEKLE--DPDSGVQSAAVNVVCELARK 104 (252)
Q Consensus 76 ~~~l~~lL~--d~d~~V~~~al~ll~ei~~~ 104 (252)
.+.+.-++. ...|.|..+++-.+..+++.
T Consensus 448 ~~~l~~l~~gL~DePrva~N~CWAf~~Laea 478 (859)
T KOG1241|consen 448 QSKLSALLEGLNDEPRVASNVCWAFISLAEA 478 (859)
T ss_pred hHHHHHHHHHhhhCchHHHHHHHHHHHHHHH
Confidence 344444443 35789998888887777743
No 139
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=66.03 E-value=18 Score=35.35 Aligned_cols=98 Identities=19% Similarity=0.161 Sum_probs=70.1
Q ss_pred HHHhcccC--CHHHHHHHHHHh---hcCC---chHhHH----HHHHHHHHhhc--------CCChHHHHHHHHHHHHHHh
Q psy11027 7 IRKDLNAQ--NQYDAGLALSAL---ACFT---STDLAR----DLANDIMMLLT--------STKPYLRKKAVLMMYKVFL 66 (252)
Q Consensus 7 i~kDL~s~--n~~~~~LAL~~l---a~i~---~~el~~----~l~~~V~~lL~--------s~~p~VRKkA~lal~ki~~ 66 (252)
+...+.++ |.-.+.++++++ ..+. .+.+.. .+..+..+.+. +.+.-.|..||-|+..+-+
T Consensus 324 ~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~ 403 (501)
T PF13001_consen 324 VFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAK 403 (501)
T ss_pred HhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHc
Confidence 44566677 777888999999 4322 344444 44455555662 2467899999999999999
Q ss_pred hCCCCcC-c--hhHHHHhhhCCCChhHHHHHHHHHHHHHhh
Q psy11027 67 KFPDALR-P--AFPRLKEKLEDPDSGVQSAAVNVVCELARK 104 (252)
Q Consensus 67 ~~Pd~l~-~--~~~~l~~lL~d~d~~V~~~al~ll~ei~~~ 104 (252)
+.|+.+. + +...+.+-|++.++.+..+.-..+..++..
T Consensus 404 ~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~a 444 (501)
T PF13001_consen 404 RAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPA 444 (501)
T ss_pred cCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHH
Confidence 9999985 3 357777777888888888877777776654
No 140
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=66.02 E-value=72 Score=27.72 Aligned_cols=111 Identities=12% Similarity=0.046 Sum_probs=67.6
Q ss_pred cccCCHHHHHHHHHHhhcCCchH-hHHHHHHHH-HHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHh-------
Q psy11027 11 LNAQNQYDAGLALSALACFTSTD-LARDLANDI-MMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKE------- 81 (252)
Q Consensus 11 L~s~n~~~~~LAL~~la~i~~~e-l~~~l~~~V-~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~------- 81 (252)
-+.+++..+.-.|.+++..+..+ .+...+-++ ..+...++...+-.+.--+.++++..|-..+..-+.+..
T Consensus 10 ~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~~~L~~~~~r~~~ 89 (234)
T PF12530_consen 10 GKISDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQPLLLLLILRIPS 89 (234)
T ss_pred cCCCChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhccc
Confidence 35678888899999998888655 443333333 344444555455566666677777777654321111111
Q ss_pred hhC--CCChhHHHHHHHHHHHHHhhCchhhhhhHHHHHHHhh
Q psy11027 82 KLE--DPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMT 121 (252)
Q Consensus 82 lL~--d~d~~V~~~al~ll~ei~~~~p~~~~~l~p~l~~lL~ 121 (252)
... +....+..+.-..+.++|...|+....+++.+...|+
T Consensus 90 ~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~~ll~~ls~~L~ 131 (234)
T PF12530_consen 90 SFSSKDEFWECLISIAASIRDICCSRPDHGVDLLPLLSGCLN 131 (234)
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHh
Confidence 111 2233444444578889999999977788888877774
No 141
>KOG0211|consensus
Probab=65.74 E-value=85 Score=32.48 Aligned_cols=148 Identities=17% Similarity=0.193 Sum_probs=94.0
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcC--chhHHHHhhhCCCChhHHHHHHHHHHHHHhhC--c-hhhh
Q psy11027 36 RDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALR--PAFPRLKEKLEDPDSGVQSAAVNVVCELARKN--P-KNYL 110 (252)
Q Consensus 36 ~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~--~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~--p-~~~~ 110 (252)
..+-+...++..+..|.||+.++-=+..+-+..+.... ...+.+.++..|..-+|..+|+..+..+...- + +...
T Consensus 236 ~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~ 315 (759)
T KOG0211|consen 236 RELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVK 315 (759)
T ss_pred HHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhh
Confidence 34666677777888999999888777766666554322 34578888888888889988888887776532 3 3445
Q ss_pred hhHHHHHHHhhcCCChhHHHHHhhccccchhhhhhhhhhcccCccchhchhhHHHHHhcCCCcchhHHHHHHHhhHHHHH
Q psy11027 111 SLAPVFFKLMTTSSNNWMLIKIIKLRLQGVFAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLVLYAVLY 190 (252)
Q Consensus 111 ~l~p~l~~lL~~~~~pwlqikiLklrL~~v~a~~v~~e~~~~n~~~~l~l~~~l~~lL~~~~nN~~~i~likl~~~e~l~ 190 (252)
.+-+.+++.... -.|.+-... +..+.+|+..++.-.+..+.=..+.-+++.-..|.++
T Consensus 316 ~~~~~l~~~~~d--~~~~v~~~~--------------------~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~ 373 (759)
T KOG0211|consen 316 SLTESLVQAVED--GSWRVSYMV--------------------ADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRY 373 (759)
T ss_pred hhhHHHHHHhcC--hhHHHHHHH--------------------hhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhH
Confidence 555666555432 124333221 1124455555555222223333344455666778899
Q ss_pred HHHHHHHHHHhhccC
Q psy11027 191 AAAWICGEFREHLDS 205 (252)
Q Consensus 191 ~~~~iv~~~~~~l~~ 205 (252)
+++..++++..|++.
T Consensus 374 a~a~~~~~l~~~l~~ 388 (759)
T KOG0211|consen 374 AIAKKVQKLACYLNA 388 (759)
T ss_pred HhhcchHHHhhhcCc
Confidence 999999999999884
No 142
>KOG1991|consensus
Probab=64.77 E-value=23 Score=37.26 Aligned_cols=105 Identities=19% Similarity=0.199 Sum_probs=73.1
Q ss_pred CCHHHHHHHHHHhhcCCc------h--HhHH-HHHHHHHHhhcCCChHHHHHHHHHHHHHHh---hCCCCcCchhHHHHh
Q psy11027 14 QNQYDAGLALSALACFTS------T--DLAR-DLANDIMMLLTSTKPYLRKKAVLMMYKVFL---KFPDALRPAFPRLKE 81 (252)
Q Consensus 14 ~n~~~~~LAL~~la~i~~------~--el~~-~l~~~V~~lL~s~~p~VRKkA~lal~ki~~---~~Pd~l~~~~~~l~~ 81 (252)
.|+.-.-=||+.+|++.+ + +..+ -+.++|...++|+.-|.|-+||-.+.++-. ++|..+..+.+-..+
T Consensus 430 ~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~ 509 (1010)
T KOG1991|consen 430 KNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHN 509 (1010)
T ss_pred cChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHH
Confidence 345555567888887652 2 3444 488999999999999999999999988773 345556667776666
Q ss_pred hhC-CCChhHHHHHHHHHHHHHhhCc---hhhhhhHHHHHH
Q psy11027 82 KLE-DPDSGVQSAAVNVVCELARKNP---KNYLSLAPVFFK 118 (252)
Q Consensus 82 lL~-d~d~~V~~~al~ll~ei~~~~p---~~~~~l~p~l~~ 118 (252)
.|. |++.-|..-|.-.+..+....+ +.++.++|...+
T Consensus 510 ~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq 550 (1010)
T KOG1991|consen 510 CLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQ 550 (1010)
T ss_pred HhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHH
Confidence 666 8888887766666666655444 346667765553
No 143
>KOG2259|consensus
Probab=63.27 E-value=30 Score=35.12 Aligned_cols=88 Identities=19% Similarity=0.130 Sum_probs=64.4
Q ss_pred HHHHHHHHHhhcCCc-----hHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcC-chhHHHHhhhCCCChhH
Q psy11027 17 YDAGLALSALACFTS-----TDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALR-PAFPRLKEKLEDPDSGV 90 (252)
Q Consensus 17 ~~~~LAL~~la~i~~-----~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~-~~~~~l~~lL~d~d~~V 90 (252)
.++-.++++...++. +.-.+.++..+..+..+.++.||+.|+-+++.+-. ---+. ...++..+.++|.+..|
T Consensus 173 ~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e--g~kL~~~~Y~~A~~~lsD~~e~V 250 (823)
T KOG2259|consen 173 GNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSE--GFKLSKACYSRAVKHLSDDYEDV 250 (823)
T ss_pred cchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcc--cccccHHHHHHHHHHhcchHHHH
Confidence 344556666655552 22234566668888889999999999999987765 11122 34689999999999999
Q ss_pred HHHHHHHHHHHHhhCc
Q psy11027 91 QSAAVNVVCELARKNP 106 (252)
Q Consensus 91 ~~~al~ll~ei~~~~p 106 (252)
..+|+.++.-..+..|
T Consensus 251 R~aAvqlv~v~gn~~p 266 (823)
T KOG2259|consen 251 RKAAVQLVSVWGNRCP 266 (823)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999988887664
No 144
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=61.74 E-value=49 Score=28.94 Aligned_cols=90 Identities=16% Similarity=0.079 Sum_probs=62.4
Q ss_pred HHHHHHhhcCCchHhHHHHHHHHHH-------------hhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhCCC
Q psy11027 20 GLALSALACFTSTDLARDLANDIMM-------------LLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDP 86 (252)
Q Consensus 20 ~LAL~~la~i~~~el~~~l~~~V~~-------------lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~d~ 86 (252)
.-+.+.+.-..+.+.++.++.+++. ...+.++-.|+.++.+.....++.++.. ..++.+...|+|+
T Consensus 88 ~~~~~~i~~~nnW~vvD~la~~~V~~~~~~~li~~~~a~~~~~~~w~rraaiv~~l~~~k~~~~~~-~if~i~E~~l~d~ 166 (222)
T COG4912 88 EEYDQWINTVNNWAVVDTLANHFVGIPLWPDLIEEWAADAEEDNRWERRAAIVHQLVYKKKTLDLL-EIFEIIELLLGDK 166 (222)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhhccccCHHHHHHHHhccccchHHHHHHHHHHHHHHhcCccchh-HHHHHHHHHccCh
Confidence 3344444445667777766666555 1233467788888777766555555544 6788999999999
Q ss_pred ChhHHHHHHHHHHHHHhhCchhhh
Q psy11027 87 DSGVQSAAVNVVCELARKNPKNYL 110 (252)
Q Consensus 87 d~~V~~~al~ll~ei~~~~p~~~~ 110 (252)
++.|..+-==++-++.++.|+.|.
T Consensus 167 e~fV~KAigWaLrq~~k~~~e~~~ 190 (222)
T COG4912 167 EFFVQKAIGWALRQIGKHSNELWV 190 (222)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHH
Confidence 999988887788999987776553
No 145
>KOG2199|consensus
Probab=60.23 E-value=24 Score=33.50 Aligned_cols=78 Identities=23% Similarity=0.321 Sum_probs=56.6
Q ss_pred hHHHHHhcccCCHHHHHHHHHHhhc----CC---chHh-HHHHHHHHHHhhc-CCChHHHHHHHHHHHH---HHhhCCCC
Q psy11027 4 TNMIRKDLNAQNQYDAGLALSALAC----FT---STDL-ARDLANDIMMLLT-STKPYLRKKAVLMMYK---VFLKFPDA 71 (252)
Q Consensus 4 ~N~i~kDL~s~n~~~~~LAL~~la~----i~---~~el-~~~l~~~V~~lL~-s~~p~VRKkA~lal~k---i~~~~Pd~ 71 (252)
.-.|.|=|++.+|+++-+||+.+.. -+ ..|+ ++++..++.+++. +..|.|++|-...+-. .|+++|++
T Consensus 47 lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~Dp~l 126 (462)
T KOG2199|consen 47 LKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKKDPSL 126 (462)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccCcch
Confidence 3467889999999999999998733 22 2444 4578999999999 6788899887666644 57888864
Q ss_pred --cCchhHHHHh
Q psy11027 72 --LRPAFPRLKE 81 (252)
Q Consensus 72 --l~~~~~~l~~ 81 (252)
+......+++
T Consensus 127 sLi~~l~~klk~ 138 (462)
T KOG2199|consen 127 SLISALYKKLKE 138 (462)
T ss_pred hHHHHHHHHHHH
Confidence 3344555555
No 146
>KOG2274|consensus
Probab=59.36 E-value=1.3e+02 Score=31.78 Aligned_cols=114 Identities=18% Similarity=0.265 Sum_probs=81.5
Q ss_pred HHHHHhcccCCHHHHHHHHHHhhcCC-chHhHHHHHHHHHHhhcC--CChHHHHHHHHHHHHHHhhC----------CCC
Q psy11027 5 NMIRKDLNAQNQYDAGLALSALACFT-STDLARDLANDIMMLLTS--TKPYLRKKAVLMMYKVFLKF----------PDA 71 (252)
Q Consensus 5 N~i~kDL~s~n~~~~~LAL~~la~i~-~~el~~~l~~~V~~lL~s--~~p~VRKkA~lal~ki~~~~----------Pd~ 71 (252)
+....-..|+++.+++-|=..+.... ++++...+ .+...+ .+--.|+-|..-+.|...++ |..
T Consensus 7 i~~L~~~ls~d~~vr~~AE~~l~qle~~~~f~~aL----~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~~ 82 (1005)
T KOG2274|consen 7 IELLSGSLSADQNVRSQAETQLKQLELTEGFGVAL----AEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYPLI 82 (1005)
T ss_pred HHHHHhhcCCChhHHHHHHHHHhccccchHHHHHH----HHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCCCc
Confidence 33344567899999999999998877 45544433 344433 45668999998888877653 332
Q ss_pred cC-c---hh-HHHHhhhCCCChhHHHHHHHHHHHHHh-hCchhhhhhHHHHHHHhhc
Q psy11027 72 LR-P---AF-PRLKEKLEDPDSGVQSAAVNVVCELAR-KNPKNYLSLAPVFFKLMTT 122 (252)
Q Consensus 72 l~-~---~~-~~l~~lL~d~d~~V~~~al~ll~ei~~-~~p~~~~~l~p~l~~lL~~ 122 (252)
+. + .+ +.+.+.|.|++.-+..++...+..|+. +.|+.|..++|.+++.+..
T Consensus 83 ~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~ 139 (1005)
T KOG2274|consen 83 VSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSS 139 (1005)
T ss_pred ccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhc
Confidence 21 1 22 566667778888888888888888887 4599999999999999873
No 147
>KOG2025|consensus
Probab=58.96 E-value=41 Score=34.50 Aligned_cols=51 Identities=29% Similarity=0.431 Sum_probs=27.4
Q ss_pred cCCChHHHHHHHHHHHHHHhhCC-CCcCchhHHHHhhh-CCCChhHHHHHHHHH
Q psy11027 47 TSTKPYLRKKAVLMMYKVFLKFP-DALRPAFPRLKEKL-EDPDSGVQSAAVNVV 98 (252)
Q Consensus 47 ~s~~p~VRKkA~lal~ki~~~~P-d~l~~~~~~l~~lL-~d~d~~V~~~al~ll 98 (252)
.+..|.||.-|++|+.|+=. +| |---+..+.+..++ +|+++-|..+|+..+
T Consensus 136 ~Drep~VRiqAv~aLsrlQ~-d~~dee~~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 136 KDREPNVRIQAVLALSRLQG-DPKDEECPVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred hccCchHHHHHHHHHHHHhc-CCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 35667777777777765432 22 11112334455555 367777776665543
No 148
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=58.43 E-value=33 Score=25.10 Aligned_cols=64 Identities=11% Similarity=0.236 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhhcC-CChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhC----CCChhHHHHHHHHH
Q psy11027 35 ARDLANDIMMLLTS-TKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLE----DPDSGVQSAAVNVV 98 (252)
Q Consensus 35 ~~~l~~~V~~lL~s-~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~----d~d~~V~~~al~ll 98 (252)
-.++..+...++.+ ++.-||....-|+.++.....+-+...|+.+...|. |.+..++..|...+
T Consensus 15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 34555666666554 688999999999999999999988888877666663 56777777665544
No 149
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=57.23 E-value=15 Score=29.11 Aligned_cols=42 Identities=14% Similarity=0.201 Sum_probs=30.6
Q ss_pred chHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCc
Q psy11027 31 STDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDAL 72 (252)
Q Consensus 31 ~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l 72 (252)
+++-+.++...+.+-|.+.+|+||.||.-.+-.+.+.-++.+
T Consensus 32 s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f 73 (122)
T cd03572 32 SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDF 73 (122)
T ss_pred CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHH
Confidence 455566777777777777778888888888877777766443
No 150
>KOG0915|consensus
Probab=57.15 E-value=83 Score=34.96 Aligned_cols=184 Identities=16% Similarity=0.177 Sum_probs=0.0
Q ss_pred CchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcC------chhHHHHhhhCCCC---hhHHHHHHHHHHH
Q psy11027 30 TSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALR------PAFPRLKEKLEDPD---SGVQSAAVNVVCE 100 (252)
Q Consensus 30 ~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~------~~~~~l~~lL~d~d---~~V~~~al~ll~e 100 (252)
.+...-..+-..+.+++.+++|+.||.++.=++.+.+.....=+ +....+.++|+|+| ..|.+-++++++|
T Consensus 811 ~n~~~~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYe 890 (1702)
T KOG0915|consen 811 VNDTRETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYE 890 (1702)
T ss_pred cCCccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEe
Q ss_pred HHhhCchhhhhhHHHHHHHhhc-----------------------------------------CCChhHHHHHhhc----
Q psy11027 101 LARKNPKNYLSLAPVFFKLMTT-----------------------------------------SSNNWMLIKIIKL---- 135 (252)
Q Consensus 101 i~~~~p~~~~~l~p~l~~lL~~-----------------------------------------~~~pwlqikiLkl---- 135 (252)
+. +.+.=++++..++.-|.. ...|=+..|-+++
T Consensus 891 lg--d~~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~ 968 (1702)
T KOG0915|consen 891 LG--DSSLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHN 968 (1702)
T ss_pred cC--CchhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhh
Q ss_pred -----cccchhhhhhhhhhcccCccchhchh-hHHHHHhcCCCcchhHHHHHHHhhHHHHHHHHHHHHHHHhhccChhHH
Q psy11027 136 -----RLQGVFAVNVVCELARKNPKNYLSLA-PVFFKLMTTSSNNWMLIKIIKLVLYAVLYAAAWICGEFREHLDSPRAT 209 (252)
Q Consensus 136 -----rL~~v~a~~v~~e~~~~n~~~~l~l~-~~l~~lL~~~~nN~~~i~likl~~~e~l~~~~~iv~~~~~~l~~~~~~ 209 (252)
|.|.-.+.+++.+.+.+....|++.. |-++++=-..+-+.+- +|+-|=+-+ ++++..+
T Consensus 969 A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~-------------aM~sIW~~L---i~D~k~~ 1032 (1702)
T KOG0915|consen 969 ATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQD-------------AMTSIWNAL---ITDSKKV 1032 (1702)
T ss_pred chhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHH-------------HHHHHHHHh---ccChHHH
Q ss_pred HHHHHhhhhccCC--ccchHHHHH
Q psy11027 210 LEAMTRRGLSLLP--GHIQAVYVQ 231 (252)
Q Consensus 210 ~~~~l~~~i~~l~--~~~~~~~~~ 231 (252)
++.-+-.-.-.|- -+..-|.|.
T Consensus 1033 vd~y~neIl~eLL~~lt~kewRVR 1056 (1702)
T KOG0915|consen 1033 VDEYLNEILDELLVNLTSKEWRVR 1056 (1702)
T ss_pred HHHHHHHHHHHHHHhccchhHHHH
No 151
>KOG2956|consensus
Probab=57.08 E-value=12 Score=36.29 Aligned_cols=56 Identities=20% Similarity=0.250 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHHhhc----CCchHh---HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCC
Q psy11027 14 QNQYDAGLALSALAC----FTSTDL---ARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFP 69 (252)
Q Consensus 14 ~n~~~~~LAL~~la~----i~~~el---~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~P 69 (252)
.++....++++++-. +..+|+ ..+++|.+++...+++..|||.|+.|+.-++.+..
T Consensus 418 ~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG 480 (516)
T KOG2956|consen 418 ADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVG 480 (516)
T ss_pred CcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHh
Confidence 344444566666643 444554 55888999999999999999999999999998766
No 152
>PF08568 Kinetochor_Ybp2: Uncharacterised protein family, YAP/Alf4/glomulin; InterPro: IPR013877 This is a family of proteins integrally involved in the central kinetochore. In baker's yeast the protein seems to be part of a macromolecular kinetochore complex and appears to contribute to the proper associations among the central kinetochore sub-complexes and the kinetochore-specific nucleosome. The family is localised in such a way as to bridge the COMA and Ndc80 complexes onto the centromeric nucleosome []. This family also includes aberrant root formation protein 4 and glomulin. Aberrant root formation protein 4 (Alf4) of Arabidopsis thaliana (Mouse-ear cress) is required for the initiation of lateral roots independent from auxin signalling. It may also function in maintaining the pericycle in the mitotically competent state needed for lateral root formation []. Glomulin (FAP68) is essential for normal development of the vasculature and may represent a naturally occurring ligand of the immunophilins FKBP59 and FKBP12 [, ].
Probab=56.99 E-value=62 Score=32.47 Aligned_cols=54 Identities=22% Similarity=0.381 Sum_probs=45.7
Q ss_pred cCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhC-CCChhHHHHHHHHHHHHH
Q psy11027 47 TSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLE-DPDSGVQSAAVNVVCELA 102 (252)
Q Consensus 47 ~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~-d~d~~V~~~al~ll~ei~ 102 (252)
.++++.+|+++.--+.+++...|+-. -+.-++++|. ++.+++.++++..+-+..
T Consensus 452 ~~p~~~lR~~~~~ll~~iL~~~p~~~--rf~~i~dlLe~c~~~~~k~~~I~~lKd~i 506 (633)
T PF08568_consen 452 YCPSPELRKIAFTLLTRILHLFPEET--RFKFIRDLLENCPFESLKASAIGWLKDEI 506 (633)
T ss_pred cCCCHHHHHHHHHHHHHHHHHCCcHh--HHHHHHHHHhcCCCHhHHHHHHHHHHHHH
Confidence 46899999999999999999999865 4566777776 588999999999998765
No 153
>KOG2025|consensus
Probab=56.53 E-value=74 Score=32.73 Aligned_cols=87 Identities=13% Similarity=0.069 Sum_probs=64.2
Q ss_pred HHHHHHHHHhhcCC----chHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCc----hhHHHHhhhCCCCh
Q psy11027 17 YDAGLALSALACFT----STDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRP----AFPRLKEKLEDPDS 88 (252)
Q Consensus 17 ~~~~LAL~~la~i~----~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~----~~~~l~~lL~d~d~ 88 (252)
-+...+-+++.++. ..|+...++.++.+...+.+.-||++.+.-+.++....-+.=+. ..+.+...|.|+.|
T Consensus 61 RIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep 140 (892)
T KOG2025|consen 61 RILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREP 140 (892)
T ss_pred HHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCc
Confidence 45566666666665 45667777888888888899999999998888877633322222 34566677789999
Q ss_pred hHHHHHHHHHHHHHh
Q psy11027 89 GVQSAAVNVVCELAR 103 (252)
Q Consensus 89 ~V~~~al~ll~ei~~ 103 (252)
.|..-|+-+++.+-.
T Consensus 141 ~VRiqAv~aLsrlQ~ 155 (892)
T KOG2025|consen 141 NVRIQAVLALSRLQG 155 (892)
T ss_pred hHHHHHHHHHHHHhc
Confidence 999999999998863
No 154
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=56.47 E-value=18 Score=22.88 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.2
Q ss_pred HHHHHHHHhhcCCChHHHHHHHH
Q psy11027 37 DLANDIMMLLTSTKPYLRKKAVL 59 (252)
Q Consensus 37 ~l~~~V~~lL~s~~p~VRKkA~l 59 (252)
.+...|.+-+.+++|.||+.|+-
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~ 40 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVD 40 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHH
Confidence 67888899999999999998864
No 155
>KOG2062|consensus
Probab=56.45 E-value=32 Score=35.38 Aligned_cols=92 Identities=18% Similarity=0.158 Sum_probs=60.9
Q ss_pred ccCCHHHHHHHHHHhhcCCchHhHHHHHHHHHHhhcC-CChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhCCCChhH
Q psy11027 12 NAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTS-TKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGV 90 (252)
Q Consensus 12 ~s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s-~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~d~d~~V 90 (252)
++.|..++-.|..+++=+...| ++..+.+.++|+. -+|+||--|++|+.=..-- .-....++-+..+.+|+.-.|
T Consensus 565 sD~nDDVrRaAVialGFVl~~d--p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAG--tG~~eAi~lLepl~~D~~~fV 640 (929)
T KOG2062|consen 565 SDVNDDVRRAAVIALGFVLFRD--PEQLPSTVSLLSESYNPHVRYGAAMALGIACAG--TGLKEAINLLEPLTSDPVDFV 640 (929)
T ss_pred cccchHHHHHHHHHheeeEecC--hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcC--CCcHHHHHHHhhhhcChHHHH
Confidence 5778889999988887766433 1234456666664 5889998888888644432 234456677777888888888
Q ss_pred HHHHHHHH-HHHHhhCch
Q psy11027 91 QSAAVNVV-CELARKNPK 107 (252)
Q Consensus 91 ~~~al~ll-~ei~~~~p~ 107 (252)
.-+|+..+ .-+++++++
T Consensus 641 RQgAlIa~amIm~Q~t~~ 658 (929)
T KOG2062|consen 641 RQGALIALAMIMIQQTEQ 658 (929)
T ss_pred HHHHHHHHHHHHHhcccc
Confidence 77765544 344555543
No 156
>KOG1820|consensus
Probab=56.05 E-value=66 Score=33.55 Aligned_cols=99 Identities=17% Similarity=0.307 Sum_probs=71.3
Q ss_pred HhcccCCHHHHHHHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCC-cC-----chhHHHHhh
Q psy11027 9 KDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDA-LR-----PAFPRLKEK 82 (252)
Q Consensus 9 kDL~s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~-l~-----~~~~~l~~l 82 (252)
.=+.......+-.++.++=.++..-=..++.+.|...+.+.+|.+|--....+-+.+++.+.. .. ...+.+.+.
T Consensus 343 d~lkekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~ 422 (815)
T KOG1820|consen 343 DRLKEKKSELRDALLKALDAILNSTPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKH 422 (815)
T ss_pred HHhhhccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhh
Confidence 334444455555555544333332233457788899999999999999999999999998843 22 345778888
Q ss_pred hCCCChhHHHHHHHHHHHHHhhCch
Q psy11027 83 LEDPDSGVQSAAVNVVCELARKNPK 107 (252)
Q Consensus 83 L~d~d~~V~~~al~ll~ei~~~~p~ 107 (252)
.+|.+.-|..+|...+-.+.+...+
T Consensus 423 ~~D~~~~VR~Aa~e~~~~v~k~~Ge 447 (815)
T KOG1820|consen 423 INDTDKDVRKAALEAVAAVMKVHGE 447 (815)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHhhH
Confidence 8999999999999999888776543
No 157
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=55.95 E-value=1.2e+02 Score=27.61 Aligned_cols=105 Identities=15% Similarity=0.192 Sum_probs=71.8
Q ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhhcC-CChHHHHHHHHHHHHHHhhC-CCCcCchhHHHHhhhCCCChhHHHHHH
Q psy11027 18 DAGLALSALACFTSTDLARDLANDIMMLLTS-TKPYLRKKAVLMMYKVFLKF-PDALRPAFPRLKEKLEDPDSGVQSAAV 95 (252)
Q Consensus 18 ~~~LAL~~la~i~~~el~~~l~~~V~~lL~s-~~p~VRKkA~lal~ki~~~~-Pd~l~~~~~~l~~lL~d~d~~V~~~al 95 (252)
-+.+..+.++.+....++..+...+..++.. ++.-....+.-|+.+-+... .+.-....+.+.+-+.|+.+.+..+-+
T Consensus 3 ~r~~~~~~L~~l~~~~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~ 82 (339)
T PF12074_consen 3 QRVLHASMLSSLPSSSLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWL 82 (339)
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHH
Confidence 3556666666666655777777777777765 67767777777776655555 344445678888888998888888888
Q ss_pred HHHHHHHh----hC-chhhhhhHHHHHHHhhc
Q psy11027 96 NVVCELAR----KN-PKNYLSLAPVFFKLMTT 122 (252)
Q Consensus 96 ~ll~ei~~----~~-p~~~~~l~p~l~~lL~~ 122 (252)
..+-+++. .. ......+.|.+.+.++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 114 (339)
T PF12074_consen 83 LCLGEALWESPNSDSLKFAEPFLPKLLQSLKE 114 (339)
T ss_pred HHHHHHHhhccCchHHHHHHHHHHHHHHHHHH
Confidence 88877775 11 22445677888877753
No 158
>KOG1248|consensus
Probab=55.30 E-value=1.1e+02 Score=32.93 Aligned_cols=110 Identities=15% Similarity=0.175 Sum_probs=73.4
Q ss_pred ccCCHHHHHHHHHHhhcCC--------c----hHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCc-----
Q psy11027 12 NAQNQYDAGLALSALACFT--------S----TDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRP----- 74 (252)
Q Consensus 12 ~s~n~~~~~LAL~~la~i~--------~----~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~----- 74 (252)
+..|...+-.|..++=+++ . ++..+.....|...+...++.++-.-+.|+.+++...-+.+..
T Consensus 748 Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~ 827 (1176)
T KOG1248|consen 748 KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEK 827 (1176)
T ss_pred ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3456666666666554433 1 3345555566666655556555555578999999888776653
Q ss_pred hhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhh-h----hhHHHHHHHhh
Q psy11027 75 AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY-L----SLAPVFFKLMT 121 (252)
Q Consensus 75 ~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~-~----~l~p~l~~lL~ 121 (252)
.++.+.-.|..+.+.++.+|+.++.-++..-|+.. . .+.|.++++.+
T Consensus 828 li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~ 879 (1176)
T KOG1248|consen 828 LISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSH 879 (1176)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHH
Confidence 45677777889999999999999999998888733 2 24455555443
No 159
>KOG1517|consensus
Probab=54.90 E-value=40 Score=36.09 Aligned_cols=89 Identities=22% Similarity=0.278 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhhcCC-chHhHH------HHHHHHHHhhcCC-ChHHHHHHHHHHHHHHhhCCCCc----C-chhHHHHhh
Q psy11027 16 QYDAGLALSALACFT-STDLAR------DLANDIMMLLTST-KPYLRKKAVLMMYKVFLKFPDAL----R-PAFPRLKEK 82 (252)
Q Consensus 16 ~~~~~LAL~~la~i~-~~el~~------~l~~~V~~lL~s~-~p~VRKkA~lal~ki~~~~Pd~l----~-~~~~~l~~l 82 (252)
+.-+++|-=-+|.|. +-.+.+ .+...-.+.|.++ .|..|+-.++|+.++|..+++.- + .+.+++..+
T Consensus 571 ~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~ 650 (1387)
T KOG1517|consen 571 PEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILL 650 (1387)
T ss_pred HHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHH
Confidence 455666655554433 111111 3555566777774 79999999999999999998742 2 457999999
Q ss_pred hCCCChhHHHHHHHHHHHHHhh
Q psy11027 83 LEDPDSGVQSAAVNVVCELARK 104 (252)
Q Consensus 83 L~d~d~~V~~~al~ll~ei~~~ 104 (252)
|+|+-|.|.++|+-.+-.+...
T Consensus 651 LsD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 651 LSDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred hcCccHHHHHHHHHHHHHHhcc
Confidence 9999999999999988887764
No 160
>KOG2933|consensus
Probab=54.89 E-value=90 Score=28.85 Aligned_cols=101 Identities=12% Similarity=0.204 Sum_probs=73.8
Q ss_pred hHHHHHhcccCCHHHHHHHHHHhhc---CCchHhHH---HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhH
Q psy11027 4 TNMIRKDLNAQNQYDAGLALSALAC---FTSTDLAR---DLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFP 77 (252)
Q Consensus 4 ~N~i~kDL~s~n~~~~~LAL~~la~---i~~~el~~---~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~ 77 (252)
.+..-+-|.|.+-...+=+|++|.+ ++.+.+.. .++..|.+-+.+.+.-|=|.|++|+.-+|..+-+.+....+
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld 169 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELD 169 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566888888888888888854 44555444 46667777788888899999999999999988877765543
Q ss_pred -HHHhhhC---CCChhHHHHHHHHHHHHHhh
Q psy11027 78 -RLKEKLE---DPDSGVQSAAVNVVCELARK 104 (252)
Q Consensus 78 -~l~~lL~---d~d~~V~~~al~ll~ei~~~ 104 (252)
.+..+|. +.+-.|.-.|-..+..+..+
T Consensus 170 ~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~ 200 (334)
T KOG2933|consen 170 DLVTQLLHKASQDNRFVREDAEKALVAMVNH 200 (334)
T ss_pred HHHHHHHhhhcccchHHHHHHHHHHHHHHhc
Confidence 4444443 35778888888888887754
No 161
>KOG4224|consensus
Probab=54.70 E-value=1.4e+02 Score=28.48 Aligned_cols=117 Identities=16% Similarity=0.141 Sum_probs=79.5
Q ss_pred HHHhcccCCHHHHHHHHHHhhcCCchHh-----HHH-HHHHHHHhhcCCChHHHHHHHHHHHH---HHhhCCCCcC-chh
Q psy11027 7 IRKDLNAQNQYDAGLALSALACFTSTDL-----ARD-LANDIMMLLTSTKPYLRKKAVLMMYK---VFLKFPDALR-PAF 76 (252)
Q Consensus 7 i~kDL~s~n~~~~~LAL~~la~i~~~el-----~~~-l~~~V~~lL~s~~p~VRKkA~lal~k---i~~~~Pd~l~-~~~ 76 (252)
+...+.+++-.++|.|..|+-|+.+.+= ++. -...+.++-++.+..+++-|.=+++- ++..-..++. ...
T Consensus 131 Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~l 210 (550)
T KOG4224|consen 131 LILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGL 210 (550)
T ss_pred HHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCc
Confidence 5566777888899999999998886543 332 22456677777788888887655544 4444444554 357
Q ss_pred HHHHhhhCCCChhHHHHHHHHHHHHHhhCc--h----hhhhhHHHHHHHhhcC
Q psy11027 77 PRLKEKLEDPDSGVQSAAVNVVCELARKNP--K----NYLSLAPVFFKLMTTS 123 (252)
Q Consensus 77 ~~l~~lL~d~d~~V~~~al~ll~ei~~~~p--~----~~~~l~p~l~~lL~~~ 123 (252)
|-+.+++...|+.|.--+.+.+.-|+-+.- + .=.+++|.++++|.+.
T Consensus 211 pvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~ 263 (550)
T KOG4224|consen 211 PVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDG 263 (550)
T ss_pred hhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCC
Confidence 999999999999988777777766653211 1 1124888888888753
No 162
>KOG1949|consensus
Probab=54.41 E-value=47 Score=34.10 Aligned_cols=110 Identities=20% Similarity=0.309 Sum_probs=76.7
Q ss_pred HHHHhcccCCHHHHHHHHHHhhc---CCch-----HhHH---HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCc
Q psy11027 6 MIRKDLNAQNQYDAGLALSALAC---FTST-----DLAR---DLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRP 74 (252)
Q Consensus 6 ~i~kDL~s~n~~~~~LAL~~la~---i~~~-----el~~---~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~ 74 (252)
.+-+-|.-+|-.+++-|+..+=+ +..| ||-+ .=+....++|.++-|.||-.|+..+.|++-++=+.++.
T Consensus 178 ~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~ 257 (1005)
T KOG1949|consen 178 ILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPP 257 (1005)
T ss_pred HHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCH
Confidence 45677889999999999877744 2333 3333 34566788999999999999999999998887777764
Q ss_pred hh--H---HHHhhhC-CCChhHHHHHHHHHHHHHhhCch---hhhhhHHHH
Q psy11027 75 AF--P---RLKEKLE-DPDSGVQSAAVNVVCELARKNPK---NYLSLAPVF 116 (252)
Q Consensus 75 ~~--~---~l~~lL~-d~d~~V~~~al~ll~ei~~~~p~---~~~~l~p~l 116 (252)
.+ + ++.+.+. |.-..|..+.+..+.+++. +|. .++.+.|.+
T Consensus 258 ~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~-np~sh~~le~~Lpal 307 (1005)
T KOG1949|consen 258 TILIDLLKKITDELAFDTSSDVRCSVFKGLPMILD-NPLSHPLLEQLLPAL 307 (1005)
T ss_pred HHHHHHHHHHHHHhhhccchheehhHhcCcHHHHc-CccchhHHHHHHHhc
Confidence 32 2 3333332 5666888899999999875 453 344455533
No 163
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=54.17 E-value=27 Score=20.63 Aligned_cols=27 Identities=19% Similarity=0.149 Sum_probs=21.2
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHH
Q psy11027 38 LANDIMMLLTSTKPYLRKKAVLMMYKV 64 (252)
Q Consensus 38 l~~~V~~lL~s~~p~VRKkA~lal~ki 64 (252)
..+.+.+++.++++.+++.|+-++..+
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 456677888888889999988887654
No 164
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=53.86 E-value=12 Score=35.87 Aligned_cols=53 Identities=19% Similarity=0.305 Sum_probs=39.0
Q ss_pred cCCHHHHHHHHHHhhcCC-----chHhHHH--HHHHHHHhhcCCChHHHHHHHHHHHHHH
Q psy11027 13 AQNQYDAGLALSALACFT-----STDLARD--LANDIMMLLTSTKPYLRKKAVLMMYKVF 65 (252)
Q Consensus 13 s~n~~~~~LAL~~la~i~-----~~el~~~--l~~~V~~lL~s~~p~VRKkA~lal~ki~ 65 (252)
|.+|.+.|.|..=+|.+. +..+++. .=..|+++|+|+++-||+-|..|+-++.
T Consensus 365 s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 365 SVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred CCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 567778888877776643 3444444 3366889999999999999999988775
No 165
>KOG0213|consensus
Probab=53.66 E-value=1.8e+02 Score=30.46 Aligned_cols=32 Identities=28% Similarity=0.558 Sum_probs=16.6
Q ss_pred hHHHHhhhCCCChhHHHHHHHHHHHHHhhCch
Q psy11027 76 FPRLKEKLEDPDSGVQSAAVNVVCELARKNPK 107 (252)
Q Consensus 76 ~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~ 107 (252)
.|++.-.|..++.-|..+++.++-.||...|+
T Consensus 885 lPrltPILknrheKVqen~IdLvg~IadrgpE 916 (1172)
T KOG0213|consen 885 LPRLTPILKNRHEKVQENCIDLVGTIADRGPE 916 (1172)
T ss_pred cccchHhhhhhHHHHHHHHHHHHHHHHhcCcc
Confidence 34444445555555555555555555554443
No 166
>KOG0212|consensus
Probab=52.96 E-value=1.1e+02 Score=30.66 Aligned_cols=105 Identities=12% Similarity=0.190 Sum_probs=79.8
Q ss_pred cccCCHHHHHHHHHHh---hcCCchHhHH---HHHHHHHHhhcCCChHHHHHHHHHHHHH---HhhCCCCcC--chhHHH
Q psy11027 11 LNAQNQYDAGLALSAL---ACFTSTDLAR---DLANDIMMLLTSTKPYLRKKAVLMMYKV---FLKFPDALR--PAFPRL 79 (252)
Q Consensus 11 L~s~n~~~~~LAL~~l---a~i~~~el~~---~l~~~V~~lL~s~~p~VRKkA~lal~ki---~~~~Pd~l~--~~~~~l 79 (252)
+...||+.|-.-+.-+ -+....+|+. ++.+.....++++++-||.-+=.++..+ ++..|+.+. +..+-+
T Consensus 176 iy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vl 255 (675)
T KOG0212|consen 176 IYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVL 255 (675)
T ss_pred HhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhc
Confidence 4455777777766555 4455677776 5778888999999999999888877655 456788764 456788
Q ss_pred HhhhCCCChhHHHHHHHHHHHHHhhCchhhhhhHHH
Q psy11027 80 KEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPV 115 (252)
Q Consensus 80 ~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~~l~p~ 115 (252)
..-+.++++....-|+.-+.|+.+..|+......+.
T Consensus 256 v~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~ 291 (675)
T KOG0212|consen 256 VPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSG 291 (675)
T ss_pred cccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhh
Confidence 888889999999999999999998877655444443
No 167
>KOG0213|consensus
Probab=52.63 E-value=45 Score=34.55 Aligned_cols=102 Identities=15% Similarity=0.163 Sum_probs=73.9
Q ss_pred chHHHHHhcccCCHHHHHHHHHHhhcCCchHhHHHHHHHHHHhhcCC-ChHHHHHHHHHHHHHHhhCCCCc-C---chhH
Q psy11027 3 TTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTST-KPYLRKKAVLMMYKVFLKFPDAL-R---PAFP 77 (252)
Q Consensus 3 ~~N~i~kDL~s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s~-~p~VRKkA~lal~ki~~~~Pd~l-~---~~~~ 77 (252)
++.+++-|+.+.+||++...=++.|-+.+.==.+.+.+.+..+..|. +..-|..++-|+-++-....-.+ + ...+
T Consensus 477 mistmrpDidn~deYVRnttarafavvasalgip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ 556 (1172)
T KOG0213|consen 477 MISTMRPDIDNKDEYVRNTTARAFAVVASALGIPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVK 556 (1172)
T ss_pred HHHhhcCCcccccHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHH
Confidence 35688999999999999877777766555444555667777777775 77788888888888766555333 3 3457
Q ss_pred HHHhhhCCCChhHHHHHHHHHHHHHhh
Q psy11027 78 RLKEKLEDPDSGVQSAAVNVVCELARK 104 (252)
Q Consensus 78 ~l~~lL~d~d~~V~~~al~ll~ei~~~ 104 (252)
.+.+.|.|.+..|..-+...+..+++.
T Consensus 557 ii~~gl~De~qkVR~itAlalsalaea 583 (1172)
T KOG0213|consen 557 IIEHGLKDEQQKVRTITALALSALAEA 583 (1172)
T ss_pred HHHHhhcccchhhhhHHHHHHHHHHHh
Confidence 888899999888877666666666653
No 168
>KOG0168|consensus
Probab=52.61 E-value=3.1e+02 Score=29.04 Aligned_cols=103 Identities=19% Similarity=0.227 Sum_probs=75.4
Q ss_pred HHHhcccC-CHHHHHHHHHHhhc---CCchHh-----HHHHHHHHHHhhcC-CChHHHHHHHHHHHHHHhhCCCCcC---
Q psy11027 7 IRKDLNAQ-NQYDAGLALSALAC---FTSTDL-----ARDLANDIMMLLTS-TKPYLRKKAVLMMYKVFLKFPDALR--- 73 (252)
Q Consensus 7 i~kDL~s~-n~~~~~LAL~~la~---i~~~el-----~~~l~~~V~~lL~s-~~p~VRKkA~lal~ki~~~~Pd~l~--- 73 (252)
+..-|+.. +|..+--||+-||. ++++|- +..+.|-+..+++| .++-+---|+-|+..++...|....
T Consensus 172 LL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV 251 (1051)
T KOG0168|consen 172 LLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVV 251 (1051)
T ss_pred HHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheee
Confidence 34445444 78888778777765 555553 55789999999998 6888999999999999999998543
Q ss_pred --chhHHHHhhhCC-CChhHHHHHHHHHHHHHhhCchhh
Q psy11027 74 --PAFPRLKEKLED-PDSGVQSAAVNVVCELARKNPKNY 109 (252)
Q Consensus 74 --~~~~~l~~lL~d-~d~~V~~~al~ll~ei~~~~p~~~ 109 (252)
+.+|-+...|-. .-..|.=-++..+..|.+.+|+.+
T Consensus 252 ~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~Ai 290 (1051)
T KOG0168|consen 252 DEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAI 290 (1051)
T ss_pred cccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHH
Confidence 367766655543 445566667888888888888754
No 169
>KOG2973|consensus
Probab=52.36 E-value=53 Score=30.42 Aligned_cols=61 Identities=20% Similarity=0.186 Sum_probs=43.2
Q ss_pred HHHHHhcccCCHHHHHHHHHHhhcCCch---Hh---HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhh
Q psy11027 5 NMIRKDLNAQNQYDAGLALSALACFTST---DL---ARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLK 67 (252)
Q Consensus 5 N~i~kDL~s~n~~~~~LAL~~la~i~~~---el---~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~ 67 (252)
+.+..-+.+.||.++..|..-+.++.+. .+ .+...+++.+++..+.| -+-|+.|+..+.++
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~ 72 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK 72 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh
Confidence 4567778999999999999777665543 11 34578888999988776 44566666665544
No 170
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=51.72 E-value=27 Score=27.08 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=27.3
Q ss_pred hHHHHhhhCCCChhHHHHHHHHHHHHHhhC
Q psy11027 76 FPRLKEKLEDPDSGVQSAAVNVVCELARKN 105 (252)
Q Consensus 76 ~~~l~~lL~d~d~~V~~~al~ll~ei~~~~ 105 (252)
++.+.+.|.|+++.|+..|+.++.+.|...
T Consensus 10 i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~ 39 (115)
T PF14663_consen 10 IELLVTQLYDPSPEVVAAALEILEEACEDK 39 (115)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhch
Confidence 577889999999999999999999999865
No 171
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=51.71 E-value=69 Score=28.88 Aligned_cols=99 Identities=19% Similarity=0.205 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhhcC-CchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhCCCChhHHHHH
Q psy11027 16 QYDAGLALSALACF-TSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAA 94 (252)
Q Consensus 16 ~~~~~LAL~~la~i-~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~d~d~~V~~~a 94 (252)
+....+-++.+..+ ..+|..+++..-+.+++.+.. -|..... ..-...++. .+..+.++++.+|..+...|
T Consensus 54 ~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~--~~~~~~~---~~~~~~~~~---~~~~fl~ll~~~D~~i~~~a 125 (312)
T PF03224_consen 54 DQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDP--SRVELFL---ELAKQDDSD---PYSPFLKLLDRNDSFIQLKA 125 (312)
T ss_dssp --------HHHHHH---HHHHHHHHHHHHHHHH-SS--SSHHHHH---HHHH-TTH-----HHHHHHH-S-SSHHHHHHH
T ss_pred hhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCH--HHHHHHH---Hhcccccch---hHHHHHHHhcCCCHHHHHHH
Confidence 34455666777888 788888888888888776644 1222222 222222222 34455558888899999999
Q ss_pred HHHHHHHHhhCchh-hh---hhHHHHHHHhhc
Q psy11027 95 VNVVCELARKNPKN-YL---SLAPVFFKLMTT 122 (252)
Q Consensus 95 l~ll~ei~~~~p~~-~~---~l~p~l~~lL~~ 122 (252)
..++..++...+.. .. ...+.+++.|++
T Consensus 126 ~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~ 157 (312)
T PF03224_consen 126 AFILTSLLSQGPKRSEKLVKEALPKLLQWLSS 157 (312)
T ss_dssp HHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHcCCccccchHHHHHHHHHHHHHH
Confidence 99999998876653 22 577888887765
No 172
>KOG2149|consensus
Probab=50.87 E-value=75 Score=30.18 Aligned_cols=65 Identities=22% Similarity=0.295 Sum_probs=55.4
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcC----chhHHHHhhhCCCChhHHHHHHHHHHHHHh
Q psy11027 39 ANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALR----PAFPRLKEKLEDPDSGVQSAAVNVVCELAR 103 (252)
Q Consensus 39 ~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~----~~~~~l~~lL~d~d~~V~~~al~ll~ei~~ 103 (252)
..++..-+.|.+.-|||-|...+..++..+|+.+. ..++.+..+..|.|..|..+...++..+..
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~ 128 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLIL 128 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHh
Confidence 35677778999999999999999999999998776 346888899999999999999998887543
No 173
>KOG2759|consensus
Probab=50.01 E-value=15 Score=34.99 Aligned_cols=51 Identities=18% Similarity=0.258 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHhhcCC--chH---hHHH--HHHHHHHhhcCCChHHHHHHHHHHHHHH
Q psy11027 15 NQYDAGLALSALACFT--STD---LARD--LANDIMMLLTSTKPYLRKKAVLMMYKVF 65 (252)
Q Consensus 15 n~~~~~LAL~~la~i~--~~e---l~~~--l~~~V~~lL~s~~p~VRKkA~lal~ki~ 65 (252)
+|.+-|.|..=++... -|+ ..+. --..|+++|+|++|.||.-|.+|+-++.
T Consensus 380 Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 380 DPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred CCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 4777777777776633 222 2222 2256888888888888888888887765
No 174
>KOG1991|consensus
Probab=49.90 E-value=84 Score=33.26 Aligned_cols=120 Identities=16% Similarity=0.172 Sum_probs=78.2
Q ss_pred chHHHHHhcccCCHHHHHHHHHHhhcCC-----chHhHHHHHHHHHHhhc-CCChHHHHHHHHHHHHHHhhCCCC---cC
Q psy11027 3 TTNMIRKDLNAQNQYDAGLALSALACFT-----STDLARDLANDIMMLLT-STKPYLRKKAVLMMYKVFLKFPDA---LR 73 (252)
Q Consensus 3 ~~N~i~kDL~s~n~~~~~LAL~~la~i~-----~~el~~~l~~~V~~lL~-s~~p~VRKkA~lal~ki~~~~Pd~---l~ 73 (252)
++|.+-=+++|+--|.+|-|.-.++.++ .+........-+.++|. |+.--||=-|++|+-.++...++. +.
T Consensus 463 lv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~ 542 (1010)
T KOG1991|consen 463 LVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVS 542 (1010)
T ss_pred HHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHh
Confidence 4566667788888899998877776555 45556678888999998 788889999999998888777644 43
Q ss_pred c----hhHHHHhhhCCCChhHHHHHHHHH-H----HHHhhCchhhhhhHHHHHHHhhc
Q psy11027 74 P----AFPRLKEKLEDPDSGVQSAAVNVV-C----ELARKNPKNYLSLAPVFFKLMTT 122 (252)
Q Consensus 74 ~----~~~~l~~lL~d~d~~V~~~al~ll-~----ei~~~~p~~~~~l~p~l~~lL~~ 122 (252)
. ..+.+.++.++-+-..++..+--+ + |+..--++...+++..+.+.+.+
T Consensus 543 ~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~ 600 (1010)
T KOG1991|consen 543 AHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQT 600 (1010)
T ss_pred hhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhc
Confidence 3 334555555554444444333221 1 22222234556677777776653
No 175
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=49.73 E-value=1.5e+02 Score=24.59 Aligned_cols=91 Identities=18% Similarity=0.262 Sum_probs=63.1
Q ss_pred HHHHHHHHHhhcCC-----chH-hHHHHHHHHHHhhcCC--ChHHHHHHHHHHHHHHhhCCCCcC----c-hhHHHHhhh
Q psy11027 17 YDAGLALSALACFT-----STD-LARDLANDIMMLLTST--KPYLRKKAVLMMYKVFLKFPDALR----P-AFPRLKEKL 83 (252)
Q Consensus 17 ~~~~LAL~~la~i~-----~~e-l~~~l~~~V~~lL~s~--~p~VRKkA~lal~ki~~~~Pd~l~----~-~~~~l~~lL 83 (252)
..-+.+|+++..+- +-| +.......|....+.+ ++.+-+.|.--+-++...+|.... + .++++...|
T Consensus 32 ~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hL 111 (160)
T PF11841_consen 32 EILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHL 111 (160)
T ss_pred HHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHH
Confidence 55677888885522 323 3334666666666653 577777665555566666665332 3 468999999
Q ss_pred CCCChhHHHHHHHHHHHHHhhCch
Q psy11027 84 EDPDSGVQSAAVNVVCELARKNPK 107 (252)
Q Consensus 84 ~d~d~~V~~~al~ll~ei~~~~p~ 107 (252)
.++|+.+..+|+.++..+..+-|+
T Consensus 112 q~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 112 QVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCCh
Confidence 999999999999999999887665
No 176
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=49.16 E-value=35 Score=37.81 Aligned_cols=89 Identities=24% Similarity=0.328 Sum_probs=60.4
Q ss_pred hHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcC-chhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhhh
Q psy11027 32 TDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALR-PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL 110 (252)
Q Consensus 32 ~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~-~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~ 110 (252)
.+..+.+..-...+|.++++.|+.-|......+|....+... +.+..|...+++.+..-+.+|+.++++++..+|+...
T Consensus 430 ~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~ 509 (1426)
T PF14631_consen 430 KDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQ 509 (1426)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHH
Confidence 444445555556677889999999999999999988743222 3445565666677777779999999999999887555
Q ss_pred hhHHHHHHHh
Q psy11027 111 SLAPVFFKLM 120 (252)
Q Consensus 111 ~l~p~l~~lL 120 (252)
++...+-.+|
T Consensus 510 ~fa~~l~giL 519 (1426)
T PF14631_consen 510 PFATFLKGIL 519 (1426)
T ss_dssp HTHHHHHGGG
T ss_pred HHHHHHHHHH
Confidence 5444444444
No 177
>KOG0392|consensus
Probab=48.76 E-value=87 Score=34.25 Aligned_cols=96 Identities=13% Similarity=0.059 Sum_probs=74.1
Q ss_pred HhcccCCHHHHHHHHHHh---hcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCC-----CCcCchhHHHH
Q psy11027 9 KDLNAQNQYDAGLALSAL---ACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFP-----DALRPAFPRLK 80 (252)
Q Consensus 9 kDL~s~n~~~~~LAL~~l---a~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~P-----d~l~~~~~~l~ 80 (252)
.-..|...+++..|-+++ +.+++.|.--.+.+.+..++.+.+..+||-++-++.......- ...+.+.+.+.
T Consensus 823 ~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pll 902 (1549)
T KOG0392|consen 823 FFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLL 902 (1549)
T ss_pred HhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhh
Confidence 345667778887777766 5567788888899999999999999999999888876654432 22234568888
Q ss_pred hhhCCCChhHHHHHHHHHHHHHhh
Q psy11027 81 EKLEDPDSGVQSAAVNVVCELARK 104 (252)
Q Consensus 81 ~lL~d~d~~V~~~al~ll~ei~~~ 104 (252)
.+++|.+-.|.-+|..++..+..-
T Consensus 903 r~msd~~d~vR~aat~~fa~lip~ 926 (1549)
T KOG0392|consen 903 RRMSDQIDSVREAATKVFAKLIPL 926 (1549)
T ss_pred cccccchHHHHHHHHHHHHHHhcc
Confidence 999999999999999988887653
No 178
>KOG1293|consensus
Probab=48.36 E-value=2.6e+02 Score=28.43 Aligned_cols=121 Identities=15% Similarity=0.181 Sum_probs=82.5
Q ss_pred CCHHHHHHHHHHhhc-------CCchHhHH-HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcC-----chhHHHH
Q psy11027 14 QNQYDAGLALSALAC-------FTSTDLAR-DLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLK 80 (252)
Q Consensus 14 ~n~~~~~LAL~~la~-------i~~~el~~-~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~-----~~~~~l~ 80 (252)
.+..+++.|+-++-+ +++. +.+ +++....+++.++.-.|.+.+.=|+.-+.-.+.+.-. .+++.+.
T Consensus 389 kd~~~~aaa~l~~~s~srsV~aL~tg-~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~ 467 (678)
T KOG1293|consen 389 KDHDFVAAALLCLKSFSRSVSALRTG-LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE 467 (678)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcC-CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence 356667777666533 2222 333 5788888999999999999888888877777766432 4678999
Q ss_pred hhhCCCChhHHHHHHHHHHHHHhhCch-----hhhhhHHHHHHHhhcCCChhHHHHHhhc
Q psy11027 81 EKLEDPDSGVQSAAVNVVCELARKNPK-----NYLSLAPVFFKLMTTSSNNWMLIKIIKL 135 (252)
Q Consensus 81 ~lL~d~d~~V~~~al~ll~ei~~~~p~-----~~~~l~p~l~~lL~~~~~pwlqikiLkl 135 (252)
+++.++||.+...++.++..+.-...+ .++++--.++-.+.+-|++=.|-..+++
T Consensus 468 s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fql 527 (678)
T KOG1293|consen 468 SMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQL 527 (678)
T ss_pred HHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999999999987642222 2222323333344444555577777777
No 179
>KOG3723|consensus
Probab=47.96 E-value=79 Score=31.73 Aligned_cols=62 Identities=15% Similarity=0.206 Sum_probs=47.6
Q ss_pred HHHHHhhCCCCcCchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhhhhhHHHHHHHhhc
Q psy11027 61 MYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTT 122 (252)
Q Consensus 61 l~ki~~~~Pd~l~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~~l~p~l~~lL~~ 122 (252)
+..+|.+-||.+.++.|++.-+|...+|.-....-.+..-|.++.|+...+++|.+.--+.+
T Consensus 186 lS~Vye~~P~~i~PhlP~l~~lL~q~~p~~~~ll~~l~~LI~Qk~~evL~~ciP~L~g~l~d 247 (851)
T KOG3723|consen 186 LSAVYEKQPQPINPHLPELLALLSQLEPEQYHLLRLLHVLIKQKQLEVLQKCIPFLIGHLKD 247 (851)
T ss_pred HHHHHhcCCCccCcccHHHHHHhcCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcc
Confidence 45678999999999999999999988876654443344445566789899999999876654
No 180
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=47.20 E-value=33 Score=34.72 Aligned_cols=100 Identities=15% Similarity=0.156 Sum_probs=69.9
Q ss_pred hHHHHHhcccCCHHHHHHHHHHhhcCCchHhHHHHHHHHHHhhcCC-ChHHHHHHHHHHHHHHhhCCCCc-C---chhHH
Q psy11027 4 TNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTST-KPYLRKKAVLMMYKVFLKFPDAL-R---PAFPR 78 (252)
Q Consensus 4 ~N~i~kDL~s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s~-~p~VRKkA~lal~ki~~~~Pd~l-~---~~~~~ 78 (252)
+.+++-|+.|.+||++...=++.|-+...==.+.+.+.+..+..|. +..-|..++-++-++.....-.. . +....
T Consensus 283 vs~mrpDi~~~deYVRnvt~ra~~vva~algv~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~c 362 (975)
T COG5181 283 VSSMRPDITSKDEYVRNVTGRAVGVVADALGVEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKC 362 (975)
T ss_pred eeeccCCcccccHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHH
Confidence 4567889999999999777666665444333444566666677664 67788888888888876654332 2 35678
Q ss_pred HHhhhCCCChhHHHHHHHHHHHHHh
Q psy11027 79 LKEKLEDPDSGVQSAAVNVVCELAR 103 (252)
Q Consensus 79 l~~lL~d~d~~V~~~al~ll~ei~~ 103 (252)
+.++|.|.+..|..-+.+.+..+++
T Consensus 363 i~~~l~D~~~~vRi~tA~alS~lae 387 (975)
T COG5181 363 ISKLLKDRSRFVRIDTANALSYLAE 387 (975)
T ss_pred HHHHhhccceeeeehhHhHHHHHHH
Confidence 8899999888776666566655554
No 181
>KOG4199|consensus
Probab=46.64 E-value=1.3e+02 Score=28.47 Aligned_cols=94 Identities=7% Similarity=0.166 Sum_probs=62.1
Q ss_pred HHHHHHHHhhcCC-chHhHHHHH-----HHHHHhhcCCChHHHHHHHHHHHHHHhhC--CCCcC------chhHHHHhhh
Q psy11027 18 DAGLALSALACFT-STDLARDLA-----NDIMMLLTSTKPYLRKKAVLMMYKVFLKF--PDALR------PAFPRLKEKL 83 (252)
Q Consensus 18 ~~~LAL~~la~i~-~~el~~~l~-----~~V~~lL~s~~p~VRKkA~lal~ki~~~~--Pd~l~------~~~~~l~~lL 83 (252)
+-+-+..+++.+. ..|+|..+. ..+.+++.+++..=-|.++-...++.+.- .|.+. ...+.+..++
T Consensus 258 ~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~ 337 (461)
T KOG4199|consen 258 SLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLA 337 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHH
Confidence 3444555566655 578888765 56888998865554444444444444432 23332 3467788777
Q ss_pred C--CCChhHHHHHHHHHHHHHhhCchhhhh
Q psy11027 84 E--DPDSGVQSAAVNVVCELARKNPKNYLS 111 (252)
Q Consensus 84 ~--d~d~~V~~~al~ll~ei~~~~p~~~~~ 111 (252)
. ..||.|+..++..++-+|-+.|++-..
T Consensus 338 ~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~ 367 (461)
T KOG4199|consen 338 LRHSDDPLVIQEVMAIISILCLRSPDHSAK 367 (461)
T ss_pred HHcCCChHHHHHHHHHHHHHHhcCcchHHH
Confidence 5 479999999999999999999986443
No 182
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=46.60 E-value=96 Score=31.30 Aligned_cols=42 Identities=14% Similarity=0.273 Sum_probs=19.4
Q ss_pred hhcCCChHHHHHHHHHHHHHH-hhCCCCcCc---hhHHHHhhhCCC
Q psy11027 45 LLTSTKPYLRKKAVLMMYKVF-LKFPDALRP---AFPRLKEKLEDP 86 (252)
Q Consensus 45 lL~s~~p~VRKkA~lal~ki~-~~~Pd~l~~---~~~~l~~lL~d~ 86 (252)
++.+++..||+.|..|...+. +.+|++.+. ..+.+.+.+.|+
T Consensus 629 L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~K 674 (926)
T COG5116 629 LMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDK 674 (926)
T ss_pred HhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhh
Confidence 344455555555555554432 344444443 223444444443
No 183
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=44.98 E-value=27 Score=27.62 Aligned_cols=48 Identities=15% Similarity=0.216 Sum_probs=38.1
Q ss_pred HHHhhCCCCcCchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhhh
Q psy11027 63 KVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL 110 (252)
Q Consensus 63 ki~~~~Pd~l~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~ 110 (252)
++-..+|+.+....+.|.+.|+++++.|-.-++.++-.+|..-++.|+
T Consensus 27 ~~t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~ 74 (122)
T cd03572 27 KLTRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFK 74 (122)
T ss_pred HHHHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHH
Confidence 344446666666778899999999999999999999999988776554
No 184
>KOG0567|consensus
Probab=44.37 E-value=1e+02 Score=27.98 Aligned_cols=90 Identities=14% Similarity=0.087 Sum_probs=60.0
Q ss_pred chHHHHHhcccCCHHHHHHHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhh
Q psy11027 3 TTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEK 82 (252)
Q Consensus 3 ~~N~i~kDL~s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~l 82 (252)
.+|.|-.-+...+..++-=+=-.+|.+.++.-++.+..-+... ..+|+||--|+-|+..+=. +...+-|.+.
T Consensus 188 aI~al~~~l~~~SalfrhEvAfVfGQl~s~~ai~~L~k~L~d~--~E~pMVRhEaAeALGaIa~------e~~~~vL~e~ 259 (289)
T KOG0567|consen 188 AINALIDGLADDSALFRHEVAFVFGQLQSPAAIPSLIKVLLDE--TEHPMVRHEAAEALGAIAD------EDCVEVLKEY 259 (289)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHhhccchhhhHHHHHHHHhh--hcchHHHHHHHHHHHhhcC------HHHHHHHHHH
Confidence 3677777777778777777777888888776665554333222 2478888888888875532 2456677788
Q ss_pred hCCCChhHHHHHHHHHHH
Q psy11027 83 LEDPDSGVQSAAVNVVCE 100 (252)
Q Consensus 83 L~d~d~~V~~~al~ll~e 100 (252)
+.|.++-|.-++...+.-
T Consensus 260 ~~D~~~vv~esc~valdm 277 (289)
T KOG0567|consen 260 LGDEERVVRESCEVALDM 277 (289)
T ss_pred cCCcHHHHHHHHHHHHHH
Confidence 888777776555554433
No 185
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=44.19 E-value=2.7e+02 Score=25.93 Aligned_cols=120 Identities=17% Similarity=0.236 Sum_probs=70.1
Q ss_pred chHHHHHhccc-------CCHHHHHHHHHHhhcCC-chHhHHH--------HHHHHHHhhcC-CChHHHHHHHHHHHHHH
Q psy11027 3 TTNMIRKDLNA-------QNQYDAGLALSALACFT-STDLARD--------LANDIMMLLTS-TKPYLRKKAVLMMYKVF 65 (252)
Q Consensus 3 ~~N~i~kDL~s-------~n~~~~~LAL~~la~i~-~~el~~~--------l~~~V~~lL~s-~~p~VRKkA~lal~ki~ 65 (252)
.++.+++|+.+ .+-....-||++++.+- .++++.. +..+-.+.+.+ +.|-.-=++++.+.+.-
T Consensus 40 l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q 119 (372)
T PF12231_consen 40 LLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQ 119 (372)
T ss_pred HHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 46789999988 45667778888887633 5666553 34444444433 23323333344444444
Q ss_pred hhCCCCcCc-hhHHHHhhhC---C--CChhHHHHHHHHHHHHHhhCchhhhh----hHHHHHHHhhc
Q psy11027 66 LKFPDALRP-AFPRLKEKLE---D--PDSGVQSAAVNVVCELARKNPKNYLS----LAPVFFKLMTT 122 (252)
Q Consensus 66 ~~~Pd~l~~-~~~~l~~lL~---d--~d~~V~~~al~ll~ei~~~~p~~~~~----l~p~l~~lL~~ 122 (252)
+-.|..+.. ..+++...+. + +..+++.-.+.++..+..+.|+.+.. -.|.++..|-+
T Consensus 120 ~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~ 186 (372)
T PF12231_consen 120 KFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLS 186 (372)
T ss_pred CCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555543 3455555543 2 35677788888999999988875433 33455544433
No 186
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=43.82 E-value=1.2e+02 Score=28.55 Aligned_cols=117 Identities=16% Similarity=0.276 Sum_probs=65.4
Q ss_pred HHHHhcccCCH-HHHHHHHHHhhcCC---chHhHHHHHHHHHHhhc----C-CChHHHHHHHHHHHHHHhhCC-------
Q psy11027 6 MIRKDLNAQNQ-YDAGLALSALACFT---STDLARDLANDIMMLLT----S-TKPYLRKKAVLMMYKVFLKFP------- 69 (252)
Q Consensus 6 ~i~kDL~s~n~-~~~~LAL~~la~i~---~~el~~~l~~~V~~lL~----s-~~p~VRKkA~lal~ki~~~~P------- 69 (252)
.+++|+..++- --+..|..++-.++ ..++.+.+...|...+. + +...-+|=+++.+.-..-...
T Consensus 214 YIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gv 293 (370)
T PF08506_consen 214 YIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGV 293 (370)
T ss_dssp HHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-
T ss_pred HHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCc
Confidence 57888875443 33445555554433 45555666677777776 2 333455666666654442221
Q ss_pred ----CCc--Cchh-HHHHhhhC---CCChhHHHHHHHHHHHHHhhCch-hhhhhHHHHHHHhhc
Q psy11027 70 ----DAL--RPAF-PRLKEKLE---DPDSGVQSAAVNVVCELARKNPK-NYLSLAPVFFKLMTT 122 (252)
Q Consensus 70 ----d~l--~~~~-~~l~~lL~---d~d~~V~~~al~ll~ei~~~~p~-~~~~l~p~l~~lL~~ 122 (252)
+.+ ..++ ..+...|. +..|-+.+.|+-.+......-|+ .+..+.|.+++.|.+
T Consensus 294 t~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~ 357 (370)
T PF08506_consen 294 TQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQS 357 (370)
T ss_dssp S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTS
T ss_pred ccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCC
Confidence 112 1232 34444444 35677778888888887766554 677888988888875
No 187
>KOG2005|consensus
Probab=43.26 E-value=3.3e+02 Score=28.12 Aligned_cols=50 Identities=20% Similarity=0.225 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHHHHhhccChhH-----HHHHHHhhhhccCCccchHHHHHHHHHHHHH
Q psy11027 185 LYAVLYAAAWICGEFREHLDSPRA-----TLEAMTRRGLSLLPGHIQAVYVQNMLKILAR 239 (252)
Q Consensus 185 ~~e~l~~~~~iv~~~~~~l~~~~~-----~~~~~l~~~i~~l~~~~~~~~~~~~~k~~~~ 239 (252)
++|+|.- .--++.+.+|+..+.. .+.+| +.-+|+++.-..+.+..++|-.
T Consensus 197 AiDlL~E-ve~id~l~~~Vd~~n~~RvclYl~sc----~~~lP~Pdd~~ll~~a~~IYlK 251 (878)
T KOG2005|consen 197 AIDLLME-VEGIDLLLDYVDEHNYQRVCLYLTSC----VPLLPGPDDVALLRTALKIYLK 251 (878)
T ss_pred HHHHHHH-hhhHhHHHHHhhhhhHHHHHHHHHHH----hhcCCCchhhHHHHHHHHHHHH
Confidence 5666665 4445667777777654 33333 5678888888888888888743
No 188
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=42.95 E-value=59 Score=24.23 Aligned_cols=57 Identities=26% Similarity=0.422 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHhhCCCCcCchhHHHHhhhCC--CChhHHHHHH-HHHHHHHhhCchhh
Q psy11027 53 LRKKAVLMMYKVFLKFPDALRPAFPRLKEKLED--PDSGVQSAAV-NVVCELARKNPKNY 109 (252)
Q Consensus 53 VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~d--~d~~V~~~al-~ll~ei~~~~p~~~ 109 (252)
.|-.|++++..+...+|-.++.++|.+...|.. .|++.+..++ ..+.+.-+.+.+.|
T Consensus 5 ~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~~~~I~~tvk~tl~eFkrtH~D~W 64 (90)
T PF11919_consen 5 RRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHANDPQPIRTTVKKTLSEFKRTHQDTW 64 (90)
T ss_dssp HHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS-SSHHHHTHHHHHHHHHHTSTTH
T ss_pred HHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcccH
Confidence 456789999999999999999988877766753 3566555544 46667766666665
No 189
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=42.61 E-value=2.8e+02 Score=25.64 Aligned_cols=109 Identities=17% Similarity=0.148 Sum_probs=65.6
Q ss_pred ccCCHHHHHHHHHHhhc-CCchHhHHHHHHHHHHhhcCCC--hHHHHHHHHHHHHHHhhCCCCcCc-----hhHHHHhhh
Q psy11027 12 NAQNQYDAGLALSALAC-FTSTDLARDLANDIMMLLTSTK--PYLRKKAVLMMYKVFLKFPDALRP-----AFPRLKEKL 83 (252)
Q Consensus 12 ~s~n~~~~~LAL~~la~-i~~~el~~~l~~~V~~lL~s~~--p~VRKkA~lal~ki~~~~Pd~l~~-----~~~~l~~lL 83 (252)
.+.++..+..||..+.. -+-..+.+++...|.+-...+. ..-.-...+.+.+....+|.+-.+ ++|.+...+
T Consensus 188 ~~~~~~~r~~aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltcl 267 (343)
T cd08050 188 VGSNEEKRREALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCL 267 (343)
T ss_pred hCCCHHHHHHHHHHhccCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHh
Confidence 35788889999999955 4456666666655555554422 233445567777777888876431 334444333
Q ss_pred -----C-----CCChhHHHHHHHHHHHHHhhCchhhhhhHHHHHHHh
Q psy11027 84 -----E-----DPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM 120 (252)
Q Consensus 84 -----~-----d~d~~V~~~al~ll~ei~~~~p~~~~~l~p~l~~lL 120 (252)
+ +.+-...--|..++..+|++....|..+.|.+++.+
T Consensus 268 v~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl 314 (343)
T cd08050 268 VAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTL 314 (343)
T ss_pred hhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Confidence 1 122355566667777777766666666666665433
No 190
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=42.60 E-value=51 Score=30.09 Aligned_cols=50 Identities=22% Similarity=0.281 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhhcCC--ChHHHHHHHHHHHHHHhhCCCCcC-chhHHHHhhhC
Q psy11027 35 ARDLANDIMMLLTST--KPYLRKKAVLMMYKVFLKFPDALR-PAFPRLKEKLE 84 (252)
Q Consensus 35 ~~~l~~~V~~lL~s~--~p~VRKkA~lal~ki~~~~Pd~l~-~~~~~l~~lL~ 84 (252)
....+.-+.-++.|+ .+.|||.|.-++.++|..+|+.+. ..+..+.+.|.
T Consensus 202 ~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~l~~~li~~l~~~l~ 254 (339)
T PF12074_consen 202 SSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPELLSKSLISGLWKWLS 254 (339)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 455788888899888 899999999999999999998543 33455555553
No 191
>KOG1293|consensus
Probab=42.20 E-value=78 Score=32.00 Aligned_cols=92 Identities=15% Similarity=0.235 Sum_probs=68.4
Q ss_pred cccCCHHHHHHHHHHhhcCCc------hHhHH-HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcC-----ch-hH
Q psy11027 11 LNAQNQYDAGLALSALACFTS------TDLAR-DLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PA-FP 77 (252)
Q Consensus 11 L~s~n~~~~~LAL~~la~i~~------~el~~-~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~-----~~-~~ 77 (252)
+.+|.-.+.+.+|.+++|+.- ..+.+ -.+..+.+.+++..+.+|+++.-++.++.-.+-+... .+ .+
T Consensus 428 l~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~ 507 (678)
T KOG1293|consen 428 LMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPAN 507 (678)
T ss_pred hhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHH
Confidence 467888899999999988651 22333 4677788888899999999999999886544433322 22 25
Q ss_pred HHHhhhCCCChhHHHHHHHHHHHHH
Q psy11027 78 RLKEKLEDPDSGVQSAAVNVVCELA 102 (252)
Q Consensus 78 ~l~~lL~d~d~~V~~~al~ll~ei~ 102 (252)
.+..+.+|+|++|.--+..++-.+.
T Consensus 508 ~i~~l~nd~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 508 LILDLINDPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhh
Confidence 5667778999999999999987764
No 192
>KOG2199|consensus
Probab=41.85 E-value=1.1e+02 Score=29.17 Aligned_cols=47 Identities=15% Similarity=0.173 Sum_probs=35.4
Q ss_pred HHHHHHHHhhCCCCcCchhHHHHhhhCCCChhHHHHHHHHHHHHHhh
Q psy11027 58 VLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARK 104 (252)
Q Consensus 58 ~lal~ki~~~~Pd~l~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~ 104 (252)
+|.+.-....+|+.-.+.+..+.+.|+.+||.|++-|++++-.+...
T Consensus 29 IlDvCD~v~~~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~N 75 (462)
T KOG2199|consen 29 ILDVCDKVGSDPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVAN 75 (462)
T ss_pred HHHHHHhhcCCCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHh
Confidence 44444555566766667778888899999999999999988877653
No 193
>KOG1949|consensus
Probab=41.74 E-value=81 Score=32.51 Aligned_cols=74 Identities=26% Similarity=0.328 Sum_probs=55.3
Q ss_pred CchHhHHHHH-HHHHHhhcCCChHHHHHHHHHHHHHHh-hCCCCcC--------chhHHHHhhhCCCChhHHHHHHHHHH
Q psy11027 30 TSTDLARDLA-NDIMMLLTSTKPYLRKKAVLMMYKVFL-KFPDALR--------PAFPRLKEKLEDPDSGVQSAAVNVVC 99 (252)
Q Consensus 30 ~~~el~~~l~-~~V~~lL~s~~p~VRKkA~lal~ki~~-~~Pd~l~--------~~~~~l~~lL~d~d~~V~~~al~ll~ 99 (252)
+.+||.-.++ +.+.+.|.-.+..||-.|+.-+.-.|- .+||.-. .-+..+.++|+|+-|.|.+-|+--++
T Consensus 166 gVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~ 245 (1005)
T KOG1949|consen 166 GVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVC 245 (1005)
T ss_pred hHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 3466665555 445588888999999999998888774 5677621 12467889999999999999988777
Q ss_pred HHHh
Q psy11027 100 ELAR 103 (252)
Q Consensus 100 ei~~ 103 (252)
.+..
T Consensus 246 k~~s 249 (1005)
T KOG1949|consen 246 KITS 249 (1005)
T ss_pred HHHH
Confidence 6653
No 194
>KOG1992|consensus
Probab=41.67 E-value=2.5e+02 Score=29.49 Aligned_cols=54 Identities=19% Similarity=0.175 Sum_probs=41.9
Q ss_pred HHHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcC
Q psy11027 20 GLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALR 73 (252)
Q Consensus 20 ~LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~ 73 (252)
+=||..+|+-.-|+=.+++.++..+-+++.+..+-+-..-.++++|+++.-..+
T Consensus 109 seal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efr 162 (960)
T KOG1992|consen 109 SEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFR 162 (960)
T ss_pred HHHHHHHhccccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccc
Confidence 567888888888999999999999999987766665555555669998864443
No 195
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=41.25 E-value=51 Score=27.99 Aligned_cols=49 Identities=8% Similarity=0.038 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhh
Q psy11027 34 LARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEK 82 (252)
Q Consensus 34 l~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~l 82 (252)
+.+.+...+.+.|++.++-|.+.+.-++-++...++-+=+...|..+++
T Consensus 77 vlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqL 125 (183)
T PF10274_consen 77 VLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEALVPYYRQL 125 (183)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 3456788888999999999999999988888655553333333444444
No 196
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=40.86 E-value=2e+02 Score=29.29 Aligned_cols=77 Identities=19% Similarity=0.247 Sum_probs=57.6
Q ss_pred hHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcC----chhHHHHhhhCCCChhHHHHHHHHHHHHHhh--C
Q psy11027 32 TDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALR----PAFPRLKEKLEDPDSGVQSAAVNVVCELARK--N 105 (252)
Q Consensus 32 ~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~----~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~--~ 105 (252)
.++.+....++.+.+.+....|||+.+--+.++.....+.=+ ...+++.+.+-|+.+.|..-|+-+++..-.. +
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~n 165 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELN 165 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCC
Confidence 567777788888888889999999998777766655444222 2456777778899999999999999887643 4
Q ss_pred chh
Q psy11027 106 PKN 108 (252)
Q Consensus 106 p~~ 108 (252)
++.
T Consensus 166 een 168 (885)
T COG5218 166 EEN 168 (885)
T ss_pred hHH
Confidence 544
No 197
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=40.70 E-value=2.1e+02 Score=23.90 Aligned_cols=36 Identities=11% Similarity=0.180 Sum_probs=29.0
Q ss_pred chHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHh
Q psy11027 31 STDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFL 66 (252)
Q Consensus 31 ~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~ 66 (252)
++++++.+...+.+.....-..||-.|.-|+.+++.
T Consensus 1 ~~~~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~ 36 (193)
T PF12612_consen 1 SPELVQQIIGGLLRQAAEKIDRVREVAGKCLQRLLH 36 (193)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467777777788877777777899999999999983
No 198
>KOG1525|consensus
Probab=40.44 E-value=1.1e+02 Score=33.55 Aligned_cols=81 Identities=17% Similarity=0.188 Sum_probs=64.5
Q ss_pred chHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCc----CchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCc
Q psy11027 31 STDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDAL----RPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNP 106 (252)
Q Consensus 31 ~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l----~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p 106 (252)
.|++.-.++|.+..-|.+.+-.+|++|.--+.++|...-..+ ++.|......+.|.++.|....+-....+...+|
T Consensus 253 ~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~ 332 (1266)
T KOG1525|consen 253 APQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNP 332 (1266)
T ss_pred hHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCc
Confidence 355555677777777788888999999999999997654433 3578888899999999999999999999888788
Q ss_pred hhhhh
Q psy11027 107 KNYLS 111 (252)
Q Consensus 107 ~~~~~ 111 (252)
+.-+.
T Consensus 333 ~~~~~ 337 (1266)
T KOG1525|consen 333 SIAKA 337 (1266)
T ss_pred hhhhH
Confidence 75443
No 199
>KOG1820|consensus
Probab=40.09 E-value=1.1e+02 Score=32.02 Aligned_cols=90 Identities=18% Similarity=0.198 Sum_probs=69.1
Q ss_pred hHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCC-CCcCchh----HHHHhhhCCCChhHHHHHHHHHHHHHhhCc
Q psy11027 32 TDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFP-DALRPAF----PRLKEKLEDPDSGVQSAAVNVVCELARKNP 106 (252)
Q Consensus 32 ~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~P-d~l~~~~----~~l~~lL~d~d~~V~~~al~ll~ei~~~~p 106 (252)
.|+..-+.+++..-|.|++.--|+.|.-.+..++..-+ +.....+ .-++..+.|.|..|++.|...+..++...+
T Consensus 248 ~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr 327 (815)
T KOG1820|consen 248 VDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLR 327 (815)
T ss_pred hhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcc
Confidence 45666778899999999999999999999999998777 4444433 345556679999999999999999999887
Q ss_pred hhhhhhH----HHHHHHhh
Q psy11027 107 KNYLSLA----PVFFKLMT 121 (252)
Q Consensus 107 ~~~~~l~----p~l~~lL~ 121 (252)
..+++++ |.++..+.
T Consensus 328 ~~~~~~~~~v~p~lld~lk 346 (815)
T KOG1820|consen 328 PLFRKYAKNVFPSLLDRLK 346 (815)
T ss_pred hhhHHHHHhhcchHHHHhh
Confidence 6665544 45554443
No 200
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=39.98 E-value=1.6e+02 Score=22.24 Aligned_cols=72 Identities=11% Similarity=0.078 Sum_probs=51.8
Q ss_pred CCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhCC--CChhHHHHHHHHHHHHHhhC-chhhhhhHHHHHHH
Q psy11027 48 STKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLED--PDSGVQSAAVNVVCELARKN-PKNYLSLAPVFFKL 119 (252)
Q Consensus 48 s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~d--~d~~V~~~al~ll~ei~~~~-p~~~~~l~p~l~~l 119 (252)
+.+..-||+|.-++..+++..++.+..+.|++...|.. ..+.....|+.+-..+.+.- ++...++.++.+..
T Consensus 26 ~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~ 100 (107)
T PF08064_consen 26 KKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIPELREEALSCWNCFIKTLDEEDLGPLLDQIFAI 100 (107)
T ss_pred CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 35677889999999999998888888888887777753 45577777777777766643 44556666655543
No 201
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=39.72 E-value=85 Score=31.49 Aligned_cols=84 Identities=15% Similarity=0.137 Sum_probs=58.6
Q ss_pred cCCHHHHHHHHHHhhcCC-chHhHHHH-HHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhCCCChhH
Q psy11027 13 AQNQYDAGLALSALACFT-STDLARDL-ANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGV 90 (252)
Q Consensus 13 s~n~~~~~LAL~~la~i~-~~el~~~l-~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~d~d~~V 90 (252)
.....+..+|+-.+|-|+ ++|+...+ ..++-..|.-+++++||.--+|..-++-.+|+. ..++.+.+...|.|..|
T Consensus 615 ~~ea~ie~~a~Lg~AliamGedig~eMvlRhf~h~mhyg~~hiR~~~PLa~gils~SnPQm--~vfDtL~r~shd~dl~v 692 (881)
T COG5110 615 NEEALIESLALLGCALIAMGEDIGSEMVLRHFSHSMHYGSSHIRSVLPLAYGILSPSNPQM--NVFDTLERSSHDGDLNV 692 (881)
T ss_pred hhHHHHHHHHHhhhHHhhhcchhhHHHHHHHhhhHhhcCcHHHHHHHHHHHhcccCCCcch--HHHHHHHHhccccchhH
Confidence 334566677776666666 55664443 344445555589999999999998777777753 45778888888999988
Q ss_pred HHHHHHHH
Q psy11027 91 QSAAVNVV 98 (252)
Q Consensus 91 ~~~al~ll 98 (252)
..+++-.+
T Consensus 693 ~~ntIfam 700 (881)
T COG5110 693 IINTIFAM 700 (881)
T ss_pred HHHHHHHh
Confidence 87776543
No 202
>KOG0567|consensus
Probab=39.15 E-value=3e+02 Score=25.00 Aligned_cols=76 Identities=17% Similarity=0.233 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhCC--CChhHHHHH
Q psy11027 17 YDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLED--PDSGVQSAA 94 (252)
Q Consensus 17 ~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~d--~d~~V~~~a 94 (252)
|-+-.|+=.+-|+|+.+-+-. +.+.+..+++..|--++.++.++-. | ..++.+.+-|.| .+|.|..-|
T Consensus 171 ~~Ry~amF~LRn~g~EeaI~a----l~~~l~~~SalfrhEvAfVfGQl~s--~----~ai~~L~k~L~d~~E~pMVRhEa 240 (289)
T KOG0567|consen 171 FERYRAMFYLRNIGTEEAINA----LIDGLADDSALFRHEVAFVFGQLQS--P----AAIPSLIKVLLDETEHPMVRHEA 240 (289)
T ss_pred HHHHhhhhHhhccCcHHHHHH----HHHhcccchHHHHHHHHHHHhhccc--h----hhhHHHHHHHHhhhcchHHHHHH
Confidence 445588888889998876554 4456777788999999999887642 2 246667776765 477777666
Q ss_pred HHHHHHHH
Q psy11027 95 VNVVCELA 102 (252)
Q Consensus 95 l~ll~ei~ 102 (252)
.-.+-.|+
T Consensus 241 AeALGaIa 248 (289)
T KOG0567|consen 241 AEALGAIA 248 (289)
T ss_pred HHHHHhhc
Confidence 66655554
No 203
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=37.23 E-value=67 Score=30.33 Aligned_cols=96 Identities=19% Similarity=0.228 Sum_probs=57.9
Q ss_pred HHHHhcccCCHHHHHHHHHHhhcCC--chHhHH-----HHHHHHHHhhcCCChHHHHHHHHHHHHHHh---hCCCCcC--
Q psy11027 6 MIRKDLNAQNQYDAGLALSALACFT--STDLAR-----DLANDIMMLLTSTKPYLRKKAVLMMYKVFL---KFPDALR-- 73 (252)
Q Consensus 6 ~i~kDL~s~n~~~~~LAL~~la~i~--~~el~~-----~l~~~V~~lL~s~~p~VRKkA~lal~ki~~---~~Pd~l~-- 73 (252)
.++-=|+|+-+-++-=|-=++|||. +.|-++ .++|.+.++|++-...+||-||-|+.-.-. .-||.++
T Consensus 331 a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryL 410 (526)
T COG5064 331 AFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYL 410 (526)
T ss_pred HHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHH
Confidence 3444466666666666666777775 444444 467888899988888899999988875432 3456543
Q ss_pred ---chhHHHHhhhCCCChhHHHHHHHHHHHH
Q psy11027 74 ---PAFPRLKEKLEDPDSGVQSAAVNVVCEL 101 (252)
Q Consensus 74 ---~~~~~l~~lL~d~d~~V~~~al~ll~ei 101 (252)
.++..+.++|.-.|--+.--++..+..+
T Consensus 411 v~qG~IkpLc~~L~~~dNkiiev~LD~~eni 441 (526)
T COG5064 411 VSQGFIKPLCDLLDVVDNKIIEVALDAIENI 441 (526)
T ss_pred HHccchhHHHHHHhccCccchhhhHHHHHHH
Confidence 2345555555544333333334444333
No 204
>KOG2032|consensus
Probab=37.12 E-value=3.3e+02 Score=26.85 Aligned_cols=100 Identities=20% Similarity=0.196 Sum_probs=70.9
Q ss_pred cccCCHHHHHHHHHHhhcCCc--hHhHH----HHHHHHHHhhcC-CChHHHHHHHHHHHHHHhhCC-CCcCc----hhHH
Q psy11027 11 LNAQNQYDAGLALSALACFTS--TDLAR----DLANDIMMLLTS-TKPYLRKKAVLMMYKVFLKFP-DALRP----AFPR 78 (252)
Q Consensus 11 L~s~n~~~~~LAL~~la~i~~--~el~~----~l~~~V~~lL~s-~~p~VRKkA~lal~ki~~~~P-d~l~~----~~~~ 78 (252)
..+++.-.++.|.+.+++..+ |+=++ .+...|+..|-| .+.-|-=.|..|+.++..+-. +-++. .--+
T Consensus 267 a~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialr 346 (533)
T KOG2032|consen 267 ATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALR 346 (533)
T ss_pred ccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHH
Confidence 467889999999999999775 33333 344555555555 455677777788877776543 23332 3368
Q ss_pred HHhhhCCCChhHHHHHHHHHHHHHhhCchhhh
Q psy11027 79 LKEKLEDPDSGVQSAAVNVVCELARKNPKNYL 110 (252)
Q Consensus 79 l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~ 110 (252)
++.+..|.++.+..+|..++..+++--...|+
T Consensus 347 lR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e 378 (533)
T KOG2032|consen 347 LRTLFDSEDDKMRAAAFVLFGALAKLAGGGWE 378 (533)
T ss_pred HHHHHHhcChhhhhhHHHHHHHHHHHcCCCch
Confidence 99999999999999999999998875444444
No 205
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=36.56 E-value=72 Score=25.72 Aligned_cols=43 Identities=19% Similarity=0.223 Sum_probs=34.9
Q ss_pred HHHHhcccCCHHHHHHHHHHhhcCCchHhHHHHHHHHHHhhcCC
Q psy11027 6 MIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTST 49 (252)
Q Consensus 6 ~i~kDL~s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s~ 49 (252)
.+..=|.++++.++.+||.|+-....+.+.++ -+.+..++.+.
T Consensus 21 ~~~~LL~~~d~~vQklAL~cll~~k~~~l~pY-~d~L~~Lldd~ 63 (141)
T PF07539_consen 21 ALLRLLSSRDPEVQKLALDCLLTWKDPYLTPY-KDNLENLLDDK 63 (141)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCcHHHHhH-HHHHHHHcCcc
Confidence 34455789999999999999999999988886 47777777664
No 206
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=36.17 E-value=3.3e+02 Score=24.71 Aligned_cols=55 Identities=33% Similarity=0.440 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHHHhhCCC--C---cCchhHHHHhhhCCCChhHHHHH---HHHHHHHHhhC
Q psy11027 51 PYLRKKAVLMMYKVFLKFPD--A---LRPAFPRLKEKLEDPDSGVQSAA---VNVVCELARKN 105 (252)
Q Consensus 51 p~VRKkA~lal~ki~~~~Pd--~---l~~~~~~l~~lL~d~d~~V~~~a---l~ll~ei~~~~ 105 (252)
+.+.-.|..|-.-+.-..|+ + +...++++..+|.+.|..|..+| +.+++|..+..
T Consensus 200 ~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~ 262 (309)
T PF05004_consen 200 AALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDH 262 (309)
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 45665665555555555554 2 22357899999999999999877 77889998753
No 207
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=36.14 E-value=1.9e+02 Score=29.28 Aligned_cols=42 Identities=21% Similarity=0.157 Sum_probs=25.5
Q ss_pred hcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhCC-CChhHH
Q psy11027 46 LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLED-PDSGVQ 91 (252)
Q Consensus 46 L~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~d-~d~~V~ 91 (252)
.++++.-|||.|+.|+.-+.-++|+.+.. ..++|++ .|++|.
T Consensus 561 vsD~nDDVrRAAViAlGfvc~~D~~~lv~----tvelLs~shN~hVR 603 (926)
T COG5116 561 VSDGNDDVRRAAVIALGFVCCDDRDLLVG----TVELLSESHNFHVR 603 (926)
T ss_pred cccCchHHHHHHHHheeeeEecCcchhhH----HHHHhhhccchhhh
Confidence 45667777777777777766667666443 3345544 355554
No 208
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=35.01 E-value=2e+02 Score=23.04 Aligned_cols=61 Identities=20% Similarity=0.362 Sum_probs=38.4
Q ss_pred chHHHHHhccc-CCHHHHHHHHHHh----hcCC---chHhH-HHHHHH-HHHhhcC---CChHHHHHHHHHHHH
Q psy11027 3 TTNMIRKDLNA-QNQYDAGLALSAL----ACFT---STDLA-RDLAND-IMMLLTS---TKPYLRKKAVLMMYK 63 (252)
Q Consensus 3 ~~N~i~kDL~s-~n~~~~~LAL~~l----a~i~---~~el~-~~l~~~-V~~lL~s---~~p~VRKkA~lal~k 63 (252)
++..|+|=+++ +||.++-+||+.+ -|-| -.|++ +++..+ +.++++. .+..||+|..-.+..
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~ 112 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQA 112 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHH
Confidence 35678888874 6999998898876 2222 13443 356666 6677753 234678777655543
No 209
>PF11099 M11L: Apoptosis regulator M11L like; InterPro: IPR021119 This entry includes the poxvirus familes F1 and C10. C10 proteins are apoptosis regulators, which function to modulate the apoptotic cascades and thereby favour productive viral replication. One of these, M11L inhibits mitochondrial-dependent apoptosis by mimicking and competing with host proteins for the binding and blocking of Bak and Bax, two executioner proteins []. The poxvirus F1 family are a family of conserved proteins related to Vaccinia virus protein F1L. They have no known function.; PDB: 2O42_B 2JBY_A 2JBX_B 2VTY_A.
Probab=34.84 E-value=35 Score=28.52 Aligned_cols=30 Identities=20% Similarity=0.224 Sum_probs=22.0
Q ss_pred hHHHHhhh-CCCChhHHHHHHHHHHHHHhhC
Q psy11027 76 FPRLKEKL-EDPDSGVQSAAVNVVCELARKN 105 (252)
Q Consensus 76 ~~~l~~lL-~d~d~~V~~~al~ll~ei~~~~ 105 (252)
-+.+..-| +|..|||-+|+++++..++++.
T Consensus 66 kn~v~~~L~~D~rpsVkLAtISLiS~I~~k~ 96 (167)
T PF11099_consen 66 KNEVIEILLSDNRPSVKLATISLISIIIEKW 96 (167)
T ss_dssp HHHHHHHCCHT--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCceeehHHHHHHHHHHHH
Confidence 34555555 4889999999999999999864
No 210
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=34.76 E-value=1.9e+02 Score=29.34 Aligned_cols=86 Identities=17% Similarity=0.138 Sum_probs=67.8
Q ss_pred HHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCC------CcCchhHHHHhhhCCCChhHHHHH
Q psy11027 21 LALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPD------ALRPAFPRLKEKLEDPDSGVQSAA 94 (252)
Q Consensus 21 LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd------~l~~~~~~l~~lL~d~d~~V~~~a 94 (252)
--|+..+.....-|.+.+...|...+.+.+-.-|-.|++|+.++.+ -|+ .+++..|-+..+.+|+-..|...+
T Consensus 350 sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~-gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~tt 428 (858)
T COG5215 350 SCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMH-GPCEDCLTKIVPQALPGIENEMSDSCLWVKSTT 428 (858)
T ss_pred HHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhc-CccHHHHHhhHHhhhHHHHHhcccceeehhhHH
Confidence 3477788899999999999999999999999999999999998874 333 234566778888888888888777
Q ss_pred HHHHHHHHhhCch
Q psy11027 95 VNVVCELARKNPK 107 (252)
Q Consensus 95 l~ll~ei~~~~p~ 107 (252)
.=++..++.+-|+
T Consensus 429 Awc~g~iad~va~ 441 (858)
T COG5215 429 AWCFGAIADHVAM 441 (858)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777765443
No 211
>KOG2259|consensus
Probab=34.58 E-value=1.8e+02 Score=29.82 Aligned_cols=80 Identities=18% Similarity=0.222 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhhcCCc--hHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcC-chhHHHHhhhCCCChhHHH
Q psy11027 16 QYDAGLALSALACFTS--TDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALR-PAFPRLKEKLEDPDSGVQS 92 (252)
Q Consensus 16 ~~~~~LAL~~la~i~~--~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~-~~~~~l~~lL~d~d~~V~~ 92 (252)
..++-.|.-.++++.. |..+..-..-+...+++.-.-||=+|+.++.++-.. =.+. +..+.+.+-|.|.++.|.-
T Consensus 387 ~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~--l~i~eeql~~il~~L~D~s~dvRe 464 (823)
T KOG2259|consen 387 YEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVH--LAIREEQLRQILESLEDRSVDVRE 464 (823)
T ss_pred HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH--heecHHHHHHHHHHHHhcCHHHHH
Confidence 4577788888888774 889888888888999998889999999999888766 1122 3346666667777666665
Q ss_pred HHHHH
Q psy11027 93 AAVNV 97 (252)
Q Consensus 93 ~al~l 97 (252)
+.-.+
T Consensus 465 ~l~el 469 (823)
T KOG2259|consen 465 ALREL 469 (823)
T ss_pred HHHHH
Confidence 54433
No 212
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=34.49 E-value=1.5e+02 Score=30.85 Aligned_cols=64 Identities=9% Similarity=0.057 Sum_probs=47.9
Q ss_pred hHHHHHhcccCCHHHHHHHHHHhhcCCchH-----hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhC
Q psy11027 4 TNMIRKDLNAQNQYDAGLALSALACFTSTD-----LARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKF 68 (252)
Q Consensus 4 ~N~i~kDL~s~n~~~~~LAL~~la~i~~~e-----l~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~ 68 (252)
+|.+--.++|+--+.++-|.-+++.+ +.| +.-.....+.+++.+++-.|+=.|++|+--+....
T Consensus 462 v~hv~P~f~s~ygfL~Srace~is~~-eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~ 530 (970)
T COG5656 462 VNHVIPAFRSNYGFLKSRACEFISTI-EEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE 530 (970)
T ss_pred HHHhhHhhcCcccchHHHHHHHHHHH-HHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch
Confidence 34444455677778888898888887 433 34468899999999988889999999997665543
No 213
>KOG0413|consensus
Probab=34.26 E-value=2.2e+02 Score=30.64 Aligned_cols=90 Identities=14% Similarity=0.219 Sum_probs=59.8
Q ss_pred HhhcCCchH--hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcC---chhHHHHhhhCCCChhHHHHHHHHHH
Q psy11027 25 ALACFTSTD--LARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALR---PAFPRLKEKLEDPDSGVQSAAVNVVC 99 (252)
Q Consensus 25 ~la~i~~~e--l~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~---~~~~~l~~lL~d~d~~V~~~al~ll~ 99 (252)
+|+.+++.= |.+--+|.|-..|.++.+.|||.+..-+.++.+.. .+. ..+=|+.--|-|.++.+..-|=-++.
T Consensus 992 am~D~C~~YTam~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~--~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~ 1069 (1529)
T KOG0413|consen 992 AMGDICSSYTAMTDRYIPMIAASLCDPSVIVRRQTIILLARLLQFG--IVKWNGELFIRFMLALLDANEDIRNDAKFYIS 1069 (1529)
T ss_pred eehhhHHHHHHHHHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhhh--hhhcchhhHHHHHHHHcccCHHHHHHHHHHHH
Confidence 344455433 66667888999999999999999999998887653 222 12334444445888888888877888
Q ss_pred HHHhh-Cchh-hhhhHHHH
Q psy11027 100 ELARK-NPKN-YLSLAPVF 116 (252)
Q Consensus 100 ei~~~-~p~~-~~~l~p~l 116 (252)
++.+. +|-. |.+++-.+
T Consensus 1070 ~vL~~~~P~~f~~~FVe~i 1088 (1529)
T KOG0413|consen 1070 EVLQSEEPNFFPLNFVEYI 1088 (1529)
T ss_pred HHHhhcCccchHHHHHHHH
Confidence 87764 4653 34444433
No 214
>KOG1243|consensus
Probab=34.03 E-value=65 Score=32.76 Aligned_cols=102 Identities=21% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHhcccCCHHHHHHHHHHhhcCCchHhHHHHHHHHHHhhcCCCh-------------------HH-------------
Q psy11027 6 MIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKP-------------------YL------------- 53 (252)
Q Consensus 6 ~i~kDL~s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s~~p-------------------~V------------- 53 (252)
.+..-+.++|+..+..+|.+|+.+.+.=--+.+-.++.+.+....+ |.
T Consensus 373 hv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~af 452 (690)
T KOG1243|consen 373 HVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAF 452 (690)
T ss_pred HHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhh
Q ss_pred -----------HHHHHHHHHHHHhhCC--CCcCchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCch
Q psy11027 54 -----------RKKAVLMMYKVFLKFP--DALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK 107 (252)
Q Consensus 54 -----------RKkA~lal~ki~~~~P--d~l~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~ 107 (252)
|+.+..++...-..++ +.....+|++.-+..|++.+|+..|-..+.+...+.++
T Consensus 453 tralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~ 519 (690)
T KOG1243|consen 453 TRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEK 519 (690)
T ss_pred hhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCcccchhhHHHHHHHHHHhhhhh
No 215
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=33.80 E-value=1.2e+02 Score=22.82 Aligned_cols=43 Identities=16% Similarity=0.185 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCC-cCchh
Q psy11027 34 LARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDA-LRPAF 76 (252)
Q Consensus 34 l~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~-l~~~~ 76 (252)
.++.+...+...|+|-.|.||.-|..-+--+.+.+|+. +...|
T Consensus 8 ~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~ 51 (102)
T PF12333_consen 8 FFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGW 51 (102)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhH
Confidence 35567777888888989999999888888888888887 54433
No 216
>KOG0413|consensus
Probab=33.15 E-value=30 Score=36.72 Aligned_cols=78 Identities=13% Similarity=0.175 Sum_probs=61.5
Q ss_pred ChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhC-CCChhHHHHHHHHHHHHHhhCchhhhhhHHHHHHHhhcCCChhH
Q psy11027 50 KPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLE-DPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWM 128 (252)
Q Consensus 50 ~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~-d~d~~V~~~al~ll~ei~~~~p~~~~~l~p~l~~lL~~~~~pwl 128 (252)
.+.||-.+++.+.++...+-+++....|.+.+-|. ..++.+..+.+-+++++|.++--.....+|.+...|.. |+|+.
T Consensus 944 ~~~vra~~vvTlakmcLah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~D-p~~iV 1022 (1529)
T KOG0413|consen 944 SDKVRAVGVVTLAKMCLAHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCD-PSVIV 1022 (1529)
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcC-chHHH
Confidence 45688999999999999998888888888888886 56888888888899999987655555667777777765 35664
No 217
>KOG4653|consensus
Probab=32.75 E-value=1.7e+02 Score=30.81 Aligned_cols=66 Identities=15% Similarity=0.122 Sum_probs=45.4
Q ss_pred chHHHHHhcccCCHHHHHHHHHHhhcCC-------chHhHHHHHHHHHHh-hcCCChHHHHHHHHHHHHHHhhCC
Q psy11027 3 TTNMIRKDLNAQNQYDAGLALSALACFT-------STDLARDLANDIMML-LTSTKPYLRKKAVLMMYKVFLKFP 69 (252)
Q Consensus 3 ~~N~i~kDL~s~n~~~~~LAL~~la~i~-------~~el~~~l~~~V~~l-L~s~~p~VRKkA~lal~ki~~~~P 69 (252)
.+|++-+-..+|+...++-++..+|+++ +..+-+ +...|..+ ..++++.+||.|+.-+..+.+-..
T Consensus 848 Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~e-v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg 921 (982)
T KOG4653|consen 848 LINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHE-VLQLILSLETTDGSVLVRRAAVHLLAELLNGTG 921 (982)
T ss_pred HHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHccCCchhhHHHHHHHHHHHHhccc
Confidence 4678888888888888888888777643 223333 33333333 346899999999999888776444
No 218
>KOG4653|consensus
Probab=32.07 E-value=1.5e+02 Score=31.25 Aligned_cols=72 Identities=17% Similarity=0.196 Sum_probs=57.8
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHhh-CCC-CcC--chhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchh
Q psy11027 37 DLANDIMMLLTSTKPYLRKKAVLMMYKVFLK-FPD-ALR--PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKN 108 (252)
Q Consensus 37 ~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~-~Pd-~l~--~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~ 108 (252)
+...+....+.++-+.+|--|..-+.+.+++ .+. .+. ..+....+.|.|.|+.|=.+|+..+..+|...|+.
T Consensus 727 e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~ 802 (982)
T KOG4653|consen 727 EPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPED 802 (982)
T ss_pred HHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchh
Confidence 4577777888888899999999999999983 232 332 24678889999999999999999888888888863
No 219
>KOG2038|consensus
Probab=31.21 E-value=2e+02 Score=30.04 Aligned_cols=61 Identities=23% Similarity=0.337 Sum_probs=53.9
Q ss_pred CCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchh
Q psy11027 48 STKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKN 108 (252)
Q Consensus 48 s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~ 108 (252)
++-+.||++|.-.++-+...-||.-....-.+...|.|++.-+.+.|..++..+...+|.+
T Consensus 315 D~L~~vk~raL~ti~~lL~~kPEqE~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnM 375 (988)
T KOG2038|consen 315 DPLEEVKKRALKTIYDLLTNKPEQENNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNM 375 (988)
T ss_pred ccHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcc
Confidence 4778999999999999999999876666677788899999999999999999999999963
No 220
>KOG2005|consensus
Probab=31.20 E-value=1.4e+02 Score=30.65 Aligned_cols=78 Identities=19% Similarity=0.192 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhCCCChhHHHHHH
Q psy11027 16 QYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAV 95 (252)
Q Consensus 16 ~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~d~d~~V~~~al 95 (252)
+.+-|+||-+|+.=-+.||+ ...+-.+|.-++|++||..-+|+.-++--+|.+ ..++.+.+...|.|..|..+|+
T Consensus 622 ~avLgiAliAMgeeig~eM~---lR~f~h~l~yge~~iRravPLal~llsvSNPq~--~vlDtLsk~shd~D~eva~naI 696 (878)
T KOG2005|consen 622 LAVLGIALIAMGEEIGSEMV---LRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQV--NVLDTLSKFSHDGDLEVAMNAI 696 (878)
T ss_pred chhhhhhhhhhhhhhhhHHH---HHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcc--hHHHHHHHhccCcchHHHHHHH
Confidence 45556666666543344443 334445666699999999999999888888865 3457788888899999988886
Q ss_pred HHH
Q psy11027 96 NVV 98 (252)
Q Consensus 96 ~ll 98 (252)
-.+
T Consensus 697 fam 699 (878)
T KOG2005|consen 697 FAM 699 (878)
T ss_pred HHh
Confidence 544
No 221
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=31.17 E-value=1e+02 Score=27.44 Aligned_cols=50 Identities=14% Similarity=0.163 Sum_probs=38.3
Q ss_pred HHHHHhhcCC-chHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCC
Q psy11027 21 LALSALACFT-STDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPD 70 (252)
Q Consensus 21 LAL~~la~i~-~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd 70 (252)
|+-....++. ++.+++...+.+.+-|.|+.+.+|+=+..++..++..++.
T Consensus 191 Lk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~ 241 (262)
T PF14500_consen 191 LKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGA 241 (262)
T ss_pred HHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCH
Confidence 3333444555 6888888888888888888888888888888888888773
No 222
>KOG0211|consensus
Probab=31.09 E-value=1.9e+02 Score=29.96 Aligned_cols=86 Identities=14% Similarity=0.170 Sum_probs=63.7
Q ss_pred HHHHHHHHHhhcCCchHh-HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCC-CCcCch-hHHHHhhhCCCChhHHHH
Q psy11027 17 YDAGLALSALACFTSTDL-ARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFP-DALRPA-FPRLKEKLEDPDSGVQSA 93 (252)
Q Consensus 17 ~~~~LAL~~la~i~~~el-~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~P-d~l~~~-~~~l~~lL~d~d~~V~~~ 93 (252)
....-++..++.+.+.++ ++++.+.+..+..++.|.||=.++--+.++.+.-- +..+.. .+-+..+-.|+|..|--.
T Consensus 575 ~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~dvr~~ 654 (759)
T KOG0211|consen 575 MTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQELDVRYR 654 (759)
T ss_pred hHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCcccchhHH
Confidence 344556678888777666 56799999999999999999999999888876543 344433 466667777999988888
Q ss_pred HHHHHHHHH
Q psy11027 94 AVNVVCELA 102 (252)
Q Consensus 94 al~ll~ei~ 102 (252)
|.-.+..+.
T Consensus 655 a~~a~~~i~ 663 (759)
T KOG0211|consen 655 AILAFGSIE 663 (759)
T ss_pred HHHHHHHHH
Confidence 876665543
No 223
>KOG1240|consensus
Probab=31.01 E-value=3.6e+02 Score=29.67 Aligned_cols=65 Identities=18% Similarity=0.218 Sum_probs=48.9
Q ss_pred CCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCC-------cCc-hhHHHHhhhCCC-ChhHHHH
Q psy11027 29 FTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDA-------LRP-AFPRLKEKLEDP-DSGVQSA 93 (252)
Q Consensus 29 i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~-------l~~-~~~~l~~lL~d~-d~~V~~~ 93 (252)
+..+...+.+.|-++.++.++.+-||=.|..++.++.-..-+. .++ .+|+|..++.|. ...|..+
T Consensus 454 i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRia 527 (1431)
T KOG1240|consen 454 IDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIA 527 (1431)
T ss_pred cchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhh
Confidence 4456667789999999999999999999999999887544332 333 469999999994 4444433
No 224
>KOG2137|consensus
Probab=30.15 E-value=4.7e+02 Score=26.91 Aligned_cols=113 Identities=12% Similarity=0.132 Sum_probs=76.7
Q ss_pred HHHHhcccCCHHHHHHHHHHhhcC----CchHhHHHHHHHHHHhhc-CCChHHHHHHHHHHHHHHhhCC-CCcCchhHHH
Q psy11027 6 MIRKDLNAQNQYDAGLALSALACF----TSTDLARDLANDIMMLLT-STKPYLRKKAVLMMYKVFLKFP-DALRPAFPRL 79 (252)
Q Consensus 6 ~i~kDL~s~n~~~~~LAL~~la~i----~~~el~~~l~~~V~~lL~-s~~p~VRKkA~lal~ki~~~~P-d~l~~~~~~l 79 (252)
.+.+-+++....++..+|+.+..+ ..+-+-+.+.+.|..+.. +++.+||-.++.|+..+.+..- -.+.+.+..+
T Consensus 393 lL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi 472 (700)
T KOG2137|consen 393 LLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDELLPI 472 (700)
T ss_pred HHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 355667788889999999988663 356666778888888764 4799999999999998883321 1222334445
Q ss_pred HhhhCCCChhHHHHHHHHHHHHHhhCch----hhhhhHHHHHH
Q psy11027 80 KEKLEDPDSGVQSAAVNVVCELARKNPK----NYLSLAPVFFK 118 (252)
Q Consensus 80 ~~lL~d~d~~V~~~al~ll~ei~~~~p~----~~~~l~p~l~~ 118 (252)
.+....+||.++..-+.+...+.-..+. ..+.+.|.++-
T Consensus 473 ~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ 515 (700)
T KOG2137|consen 473 LKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIP 515 (700)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhh
Confidence 5555678888888888877776655554 23445554443
No 225
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. AP180 and CALM play important roles in clathrin-mediated endocytosis. AP180 is a brain-specific clathrin-binding protein which stimulates clathrin assembly during the recycling of synaptic vesicles. The ANTH domain is structurally similar to the VHS domain and is composed of a superhelix of eight alpha helices. ANTH domains bind both inositol phospholipids and proteins, and contribute to the nucleation and formation of clathrin coats on membranes. ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that the ANTH domain is a universal component of the machine
Probab=30.14 E-value=1.6e+02 Score=22.50 Aligned_cols=42 Identities=19% Similarity=0.159 Sum_probs=34.5
Q ss_pred hhCCCCcCchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCch
Q psy11027 66 LKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK 107 (252)
Q Consensus 66 ~~~Pd~l~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~ 107 (252)
...+..+..++..+.+.+.++|.-|+.-++.++..+.+.-++
T Consensus 29 ~~~~~~~~~~~~~l~~Rl~~~~w~v~~K~LillH~llr~G~~ 70 (117)
T cd03564 29 SSSPASIPSFASALSRRLLDRNWVVVLKALILLHRLLREGHP 70 (117)
T ss_pred cCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCCH
Confidence 334666777888899999899999999999999999886544
No 226
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=30.07 E-value=3.6e+02 Score=23.99 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=12.4
Q ss_pred ChHHHHHHHHHHHHHHhhCCC
Q psy11027 50 KPYLRKKAVLMMYKVFLKFPD 70 (252)
Q Consensus 50 ~p~VRKkA~lal~ki~~~~Pd 70 (252)
..|+|--|.-|+..+....|.
T Consensus 126 ~~yvR~aa~~aL~~l~~~~~~ 146 (249)
T PF06685_consen 126 DEYVRMAAISALAFLVHEGPI 146 (249)
T ss_pred HHHHHHHHHHHHHHHHHcCCC
Confidence 455666666666666655554
No 227
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=29.99 E-value=4.2e+02 Score=25.52 Aligned_cols=86 Identities=15% Similarity=0.119 Sum_probs=58.2
Q ss_pred HhcccCC-HHHHHHHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhh----CCCCcCchhHHHHhhh
Q psy11027 9 KDLNAQN-QYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLK----FPDALRPAFPRLKEKL 83 (252)
Q Consensus 9 kDL~s~n-~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~----~Pd~l~~~~~~l~~lL 83 (252)
+...+.+ +...-+-++.++.+..+|..+++..-+-+++.+... ..+.|.. +|+....++ .+|
T Consensus 44 ~~~~~~~~~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~---------~~~~f~~~~~~~~~~~~~fl----~lL 110 (429)
T cd00256 44 EEILDVLSGQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDT---------RVKLFHDDALLKKKTWEPFF----NLL 110 (429)
T ss_pred HHHhcccHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchH---------HHHHHHHHhhccccchHHHH----HHH
Confidence 3344444 566666788889999999999999999999887422 1222322 355433333 367
Q ss_pred CCCChhHHHHHHHHHHHHHhhCch
Q psy11027 84 EDPDSGVQSAAVNVVCELARKNPK 107 (252)
Q Consensus 84 ~d~d~~V~~~al~ll~ei~~~~p~ 107 (252)
..+|..+...|..++..+....+.
T Consensus 111 ~~~d~~i~~~a~~iLt~l~~~~~~ 134 (429)
T cd00256 111 NRQDQFIVHMSFSILAKLACFGLA 134 (429)
T ss_pred cCCchhHHHHHHHHHHHHHhcCcc
Confidence 777889999999988888765443
No 228
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=29.09 E-value=2.5e+02 Score=22.67 Aligned_cols=62 Identities=15% Similarity=0.173 Sum_probs=47.3
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhCCCChhHHHHHHHHHHHHHh
Q psy11027 37 DLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELAR 103 (252)
Q Consensus 37 ~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~ 103 (252)
.-+....+-|+.+...+.|.|..|+ ++.+.-++.|+.+.+-|++.+.....+-.-++-.+|.
T Consensus 8 ~~F~~~L~~L~aS~qSi~kaa~fAl-----k~~~~~edL~~cIle~le~~~lN~R~nI~~fID~l~e 69 (139)
T PF12243_consen 8 MQFTQLLRRLNASQQSIQKAAQFAL-----KNRDMEEDLWSCILEQLEKENLNTRINIFYFIDSLCE 69 (139)
T ss_pred HHHHHHHHHcchhHHHHHHHHHHHH-----HccccHHHHHHHHHHHHhccchhhHHHHHHHHHHHHH
Confidence 3455667778888888999998887 5577778889999999999887777777666655553
No 229
>KOG2759|consensus
Probab=28.62 E-value=1.2e+02 Score=29.10 Aligned_cols=68 Identities=19% Similarity=0.224 Sum_probs=53.4
Q ss_pred HHHHHHHHhhcCC-ChHHHHHHHHHHHHHHhhCCCCc---C--chhHHHHhhhCCCChhHHHHHHHHHHHHHhh
Q psy11027 37 DLANDIMMLLTST-KPYLRKKAVLMMYKVFLKFPDAL---R--PAFPRLKEKLEDPDSGVQSAAVNVVCELARK 104 (252)
Q Consensus 37 ~l~~~V~~lL~s~-~p~VRKkA~lal~ki~~~~Pd~l---~--~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~ 104 (252)
.+..-+.++|.++ +|.+---|+.=+....|.+|+.- . ..-+++.++++++||.|.=.|+..+..+.-.
T Consensus 366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 3555566677654 59999999999999999999843 3 3458999999999999999998888776543
No 230
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=28.28 E-value=3.1e+02 Score=21.88 Aligned_cols=62 Identities=16% Similarity=0.242 Sum_probs=39.5
Q ss_pred chhHHHHhhhC-CCChhHHHHHHHHHHHHHhhCchhhh------hhHHH-HHHHhhcCCC--hhHHHHHhhc
Q psy11027 74 PAFPRLKEKLE-DPDSGVQSAAVNVVCELARKNPKNYL------SLAPV-FFKLMTTSSN--NWMLIKIIKL 135 (252)
Q Consensus 74 ~~~~~l~~lL~-d~d~~V~~~al~ll~ei~~~~p~~~~------~l~p~-l~~lL~~~~~--pwlqikiLkl 135 (252)
+....+++.|. .+||.|+.-|+.++..+.+.=...|+ .+... +++++....+ +=.+-|++.+
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~l 109 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLAL 109 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHH
Confidence 45566777777 47999999999999888775455554 34555 6666653222 2345556555
No 231
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=27.93 E-value=3e+02 Score=28.76 Aligned_cols=103 Identities=19% Similarity=0.208 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHhhcCCc--h------HhHH-HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCC--CcCchhHHHHhhh
Q psy11027 15 NQYDAGLALSALACFTS--T------DLAR-DLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPD--ALRPAFPRLKEKL 83 (252)
Q Consensus 15 n~~~~~LAL~~la~i~~--~------el~~-~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd--~l~~~~~~l~~lL 83 (252)
|+.-.-=||+.+|++.+ . .+.+ -+.++|...+.++.-++|-+|+--+.++=...|| .+...++-..+.|
T Consensus 429 narq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl 508 (970)
T COG5656 429 NARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCL 508 (970)
T ss_pred cHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 45555668899988776 2 2223 4778888888999999999999988888554454 4445678888888
Q ss_pred CCCChhHHHHHHHHHHHHHhhCc--hhhhhhHHHHH
Q psy11027 84 EDPDSGVQSAAVNVVCELARKNP--KNYLSLAPVFF 117 (252)
Q Consensus 84 ~d~d~~V~~~al~ll~ei~~~~p--~~~~~l~p~l~ 117 (252)
.+++.-|..-|.-.+.-+..++. +.+..++|..+
T Consensus 509 ~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tm 544 (970)
T COG5656 509 KNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETM 544 (970)
T ss_pred hcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHH
Confidence 88877777655555554444331 23455666544
No 232
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=27.79 E-value=2.7e+02 Score=28.21 Aligned_cols=79 Identities=24% Similarity=0.236 Sum_probs=49.1
Q ss_pred HHHHHHHhhcCCCh-HHHHHHHHHHHHHHh----hCCCCcCchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhhhhh
Q psy11027 38 LANDIMMLLTSTKP-YLRKKAVLMMYKVFL----KFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSL 112 (252)
Q Consensus 38 l~~~V~~lL~s~~p-~VRKkA~lal~ki~~----~~Pd~l~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~~l 112 (252)
+..-..+.|.+.+| .+---.+.|+.-+-. .....++.+.|.+.+.|+..|..|...|+.++-+++..-...|...
T Consensus 598 lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y 677 (858)
T COG5215 598 LMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIY 677 (858)
T ss_pred HHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 55555566655422 233333333333222 2222345577899999999999999999999999998665555544
Q ss_pred HHHH
Q psy11027 113 APVF 116 (252)
Q Consensus 113 ~p~l 116 (252)
...+
T Consensus 678 ~d~~ 681 (858)
T COG5215 678 ADVL 681 (858)
T ss_pred HHHH
Confidence 4433
No 233
>KOG4413|consensus
Probab=27.77 E-value=4.8e+02 Score=24.72 Aligned_cols=120 Identities=15% Similarity=0.248 Sum_probs=73.6
Q ss_pred HHHhcccCCHHHHHHHHHHhhcCC----chHhHH-------HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCch
Q psy11027 7 IRKDLNAQNQYDAGLALSALACFT----STDLAR-------DLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPA 75 (252)
Q Consensus 7 i~kDL~s~n~~~~~LAL~~la~i~----~~el~~-------~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~ 75 (252)
+|+-|..++.-+..||+..+++|- +.+..+ .+.+.+..++..++..|-|.|.-.+.|+- ..|+.++-.
T Consensus 87 LQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikria-lfpaaleai 165 (524)
T KOG4413|consen 87 LQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIA-LFPAALEAI 165 (524)
T ss_pred HHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHH-hcHHHHHHh
Confidence 577788899999999999999875 223322 35566667777788999988888776654 566665544
Q ss_pred hHH-HHhhhC------CCChhHHHHHHHHHHHHHhhCchh--h---hhhHHHHHHHhhcCCChh
Q psy11027 76 FPR-LKEKLE------DPDSGVQSAAVNVVCELARKNPKN--Y---LSLAPVFFKLMTTSSNNW 127 (252)
Q Consensus 76 ~~~-l~~lL~------d~d~~V~~~al~ll~ei~~~~p~~--~---~~l~p~l~~lL~~~~~pw 127 (252)
|+. +.+.+. .-+.-+.--.+.++.++...+|+. + ..+...+..-|++..|-.
T Consensus 166 FeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtL 229 (524)
T KOG4413|consen 166 FESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTL 229 (524)
T ss_pred cccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCccee
Confidence 421 111111 112233445567888888877762 2 234555555555544433
No 234
>KOG4413|consensus
Probab=27.60 E-value=4.7e+02 Score=24.77 Aligned_cols=121 Identities=13% Similarity=0.240 Sum_probs=77.0
Q ss_pred ccCCHHHHHHHHHHhhcCC-chHhHHHHHHH-------HHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCch-----hHH
Q psy11027 12 NAQNQYDAGLALSALACFT-STDLARDLAND-------IMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPA-----FPR 78 (252)
Q Consensus 12 ~s~n~~~~~LAL~~la~i~-~~el~~~l~~~-------V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~-----~~~ 78 (252)
...|..+.-.|..++.+|. .|+-.+.+++. ...+-...+..+|-+.+--+.++|..+|+..... ...
T Consensus 138 ggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldl 217 (524)
T KOG4413|consen 138 GGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDL 217 (524)
T ss_pred cCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHH
Confidence 3456667777777777776 44444433321 1222233466788888888899999999887642 333
Q ss_pred HHhhhC-CCChhHHHHHHHHHHHHHhhC-chhh---hhhHHHHHHHhhc-CCChhHHHHH
Q psy11027 79 LKEKLE-DPDSGVQSAAVNVVCELARKN-PKNY---LSLAPVFFKLMTT-SSNNWMLIKI 132 (252)
Q Consensus 79 l~~lL~-d~d~~V~~~al~ll~ei~~~~-p~~~---~~l~p~l~~lL~~-~~~pwlqiki 132 (252)
+..-|. .+|.-|.++.+-+.++++... ...| .+++..+..+.++ .++||---+.
T Consensus 218 LeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfra 277 (524)
T KOG4413|consen 218 LEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRA 277 (524)
T ss_pred HHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHH
Confidence 333333 479999999999999998643 3333 3455666666653 5789876533
No 235
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=27.50 E-value=1.1e+02 Score=30.51 Aligned_cols=67 Identities=22% Similarity=0.355 Sum_probs=53.0
Q ss_pred HHHHhhcC-CChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCch
Q psy11027 41 DIMMLLTS-TKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK 107 (252)
Q Consensus 41 ~V~~lL~s-~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~ 107 (252)
+|.+.|++ +-.|||++-+-.++.+...-|+.-.+....+...|.|.+--|.+-|-.++..+-...|.
T Consensus 194 evle~ls~d~i~~Vk~qvv~~VydLL~a~peqe~nLl~L~INKlGDk~~kvsskasY~ilkLe~~hP~ 261 (821)
T COG5593 194 EVLEVLSHDPIQYVKKQVVRLVYDLLEARPEQEVNLLHLFINKLGDKRDKVSSKASYVILKLELLHPG 261 (821)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhhccchhhhhhhhhHHHHHHHhcCCc
Confidence 55666676 57899999999999999999988777777777888888888887777777766555563
No 236
>KOG1822|consensus
Probab=27.13 E-value=5.7e+02 Score=29.60 Aligned_cols=108 Identities=17% Similarity=0.080 Sum_probs=66.3
Q ss_pred HHHHhcccCCHHHHHHHHHHhhcCC----chHhHHHHHHHHHHhhcCCChHHHHHH-HHHHHHHHhhCCCCcCc--hh--
Q psy11027 6 MIRKDLNAQNQYDAGLALSALACFT----STDLARDLANDIMMLLTSTKPYLRKKA-VLMMYKVFLKFPDALRP--AF-- 76 (252)
Q Consensus 6 ~i~kDL~s~n~~~~~LAL~~la~i~----~~el~~~l~~~V~~lL~s~~p~VRKkA-~lal~ki~~~~Pd~l~~--~~-- 76 (252)
.+-+++.++||..+|.|-.+++.+. .+...-.++.-..+-+.+..+-++|.. .+|+..++|........ ..
T Consensus 880 l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~ 959 (2067)
T KOG1822|consen 880 LIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTS 959 (2067)
T ss_pred HHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccH
Confidence 4567888999999998877776643 344444455555555666555566665 55555555554444442 22
Q ss_pred -HHHHhhhCCCC-hhHHHHHHHHHHHHHhhCchhhhhhH
Q psy11027 77 -PRLKEKLEDPD-SGVQSAAVNVVCELARKNPKNYLSLA 113 (252)
Q Consensus 77 -~~l~~lL~d~d-~~V~~~al~ll~ei~~~~p~~~~~l~ 113 (252)
..+..+-.|++ |-|...++..+.-+....-..|+.++
T Consensus 960 v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~v 998 (2067)
T KOG1822|consen 960 VSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLV 998 (2067)
T ss_pred HHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhH
Confidence 35555556765 57888888888777765433444443
No 237
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=26.49 E-value=5.8e+02 Score=25.91 Aligned_cols=30 Identities=27% Similarity=0.539 Sum_probs=26.0
Q ss_pred hHHHHhhhCCCChhHHHHHHHHHHHHHhhC
Q psy11027 76 FPRLKEKLEDPDSGVQSAAVNVVCELARKN 105 (252)
Q Consensus 76 ~~~l~~lL~d~d~~V~~~al~ll~ei~~~~ 105 (252)
.+.+.+.+.|+|+....++++.+.|+.+.+
T Consensus 49 LellVeriqd~d~~l~~~sLn~LkeviksS 78 (881)
T COG5110 49 LELLVERIQDPDIDLQNNSLNMLKEVIKSS 78 (881)
T ss_pred HHHHHHHhhCCChHHHHHHHHHHHHHHhcc
Confidence 467778889999999999999999998754
No 238
>PF07540 NOC3p: Nucleolar complex-associated protein; InterPro: IPR011501 Nucleolar complex-associated protein (Noc3p, Q07896 from SWISSPROT) is conserved in eukaryotes and plays essential roles in replication and rRNA processing in Saccharomyces cerevisiae [].
Probab=26.36 E-value=1.9e+02 Score=21.73 Aligned_cols=37 Identities=22% Similarity=0.251 Sum_probs=28.7
Q ss_pred chHhHHHHHHHHHHhhcCC-ChHHHHHHHHHHHHHHhh
Q psy11027 31 STDLARDLANDIMMLLTST-KPYLRKKAVLMMYKVFLK 67 (252)
Q Consensus 31 ~~el~~~l~~~V~~lL~s~-~p~VRKkA~lal~ki~~~ 67 (252)
.||-.-....++.+++.+. +..|||-|.+++..+|+.
T Consensus 18 ~PE~ni~~lk~l~~~~~~~~~~~v~kLa~lSl~~VFkD 55 (95)
T PF07540_consen 18 DPEENIGSLKRLLKLCESKVDVTVRKLAILSLLAVFKD 55 (95)
T ss_pred CHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhh
Confidence 5665555677778888877 889999999999988863
No 239
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=25.63 E-value=2.7e+02 Score=20.44 Aligned_cols=54 Identities=20% Similarity=0.188 Sum_probs=39.0
Q ss_pred CChHHHHHHHHHHHHHHhhCCCCcCch----hHHHHhhhCC--CChhHHHHHHHHHHHHH
Q psy11027 49 TKPYLRKKAVLMMYKVFLKFPDALRPA----FPRLKEKLED--PDSGVQSAAVNVVCELA 102 (252)
Q Consensus 49 ~~p~VRKkA~lal~ki~~~~Pd~l~~~----~~~l~~lL~d--~d~~V~~~al~ll~ei~ 102 (252)
.+-.+|..|+-.+..+.+++.+.-... +..+.+-+.| +..+..=.|+..+.++-
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG 77 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG 77 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 456899999999999999987766544 4445555555 46677777777777774
No 240
>KOG1048|consensus
Probab=25.10 E-value=4.7e+02 Score=27.03 Aligned_cols=115 Identities=16% Similarity=0.119 Sum_probs=72.7
Q ss_pred cCCHHHHHHHHHHhhcCC------chHhHHHH------HHHHHHhhcCCChHHHHHHHHHHHHHHhhCC---CCcC-chh
Q psy11027 13 AQNQYDAGLALSALACFT------STDLARDL------ANDIMMLLTSTKPYLRKKAVLMMYKVFLKFP---DALR-PAF 76 (252)
Q Consensus 13 s~n~~~~~LAL~~la~i~------~~el~~~l------~~~V~~lL~s~~p~VRKkA~lal~ki~~~~P---d~l~-~~~ 76 (252)
+.|+.+.--+..++-|+. ...|+..+ .+.+.+++...++.|-+.++-++..+- .++ +++- ..+
T Consensus 530 s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls-~d~rnk~ligk~a~ 608 (717)
T KOG1048|consen 530 SKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLS-RDIRNKELIGKYAI 608 (717)
T ss_pred hcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhc-cCchhhhhhhcchH
Confidence 445555544444443322 34444444 477889999999889888887775543 232 2332 457
Q ss_pred HHHHhhhCCCC------hhHHHHHHHHHHHHHhhCchhhhh-----hHHHHHHHhhcCCChhH
Q psy11027 77 PRLKEKLEDPD------SGVQSAAVNVVCELARKNPKNYLS-----LAPVFFKLMTTSSNNWM 128 (252)
Q Consensus 77 ~~l~~lL~d~d------~~V~~~al~ll~ei~~~~p~~~~~-----l~p~l~~lL~~~~~pwl 128 (252)
+.+.+.|-+.. -..+.+++..+.++...+++..++ -+|.++-+..+.-+||.
T Consensus 609 ~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~ 671 (717)
T KOG1048|consen 609 PDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKE 671 (717)
T ss_pred HHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHH
Confidence 88888886643 467888889999999888875443 34666655555555554
No 241
>KOG2549|consensus
Probab=24.97 E-value=7.1e+02 Score=24.94 Aligned_cols=113 Identities=14% Similarity=0.168 Sum_probs=74.0
Q ss_pred HhcccCCHHHHHHHHHHhhc-CCchHhHHHHHHHHHHhhcCC--ChHHHHHH-HHHHHHHHhhCCCCcC-c----hhHHH
Q psy11027 9 KDLNAQNQYDAGLALSALAC-FTSTDLARDLANDIMMLLTST--KPYLRKKA-VLMMYKVFLKFPDALR-P----AFPRL 79 (252)
Q Consensus 9 kDL~s~n~~~~~LAL~~la~-i~~~el~~~l~~~V~~lL~s~--~p~VRKkA-~lal~ki~~~~Pd~l~-~----~~~~l 79 (252)
+=+.++|+.-+.-||.++.. -|-..|.+++...|-+..+-+ --.++.-. ++=+.+..-++|.+.. . ..|.+
T Consensus 214 ~a~~g~~~~~r~eAL~sL~TDsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSv 293 (576)
T KOG2549|consen 214 EACTGSDEPLRQEALQSLETDSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSV 293 (576)
T ss_pred HHHhcCCHHHHHHHHHhhccCccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHHHHhhHH
Confidence 34567899999999999955 556888888888887777654 22334333 3445566667887653 2 23333
Q ss_pred Hhhh-----C-----CCChhHHHHHHHHHHHHHhhCchhhhhhHHHHHHHhh
Q psy11027 80 KEKL-----E-----DPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMT 121 (252)
Q Consensus 80 ~~lL-----~-----d~d~~V~~~al~ll~ei~~~~p~~~~~l~p~l~~lL~ 121 (252)
...+ . |++-.+.--|..++..+|++.++.|..+.|.+++.|.
T Consensus 294 lTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~ 345 (576)
T KOG2549|consen 294 LTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLS 345 (576)
T ss_pred HHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3222 1 2233456677778888998888888888887777554
No 242
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=24.84 E-value=1.7e+02 Score=30.92 Aligned_cols=61 Identities=20% Similarity=0.299 Sum_probs=49.9
Q ss_pred ccCCHHHH--HHHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCc
Q psy11027 12 NAQNQYDA--GLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDAL 72 (252)
Q Consensus 12 ~s~n~~~~--~LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l 72 (252)
+++|..-. |+|...+|+..-|+=.+.+.+++...+++.+...-+....++.++|++.-...
T Consensus 96 ~s~n~l~iq~a~avs~IA~~DfPdeWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~r~l~ 158 (947)
T COG5657 96 SSSNQLQIQNALAVSRIARLDFPDEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRLRRLF 158 (947)
T ss_pred cccchHHHHHHHHHHHHHhccCcccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHHhhhh
Confidence 56776666 88899999999999999999999999999666666777888888887765443
No 243
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=24.54 E-value=4.6e+02 Score=22.61 Aligned_cols=48 Identities=19% Similarity=0.191 Sum_probs=40.0
Q ss_pred HHHHHHHHhhCCCCcCchhHHHHhhh-CCCChhHHHHHHHHHHHHHhhC
Q psy11027 58 VLMMYKVFLKFPDALRPAFPRLKEKL-EDPDSGVQSAAVNVVCELARKN 105 (252)
Q Consensus 58 ~lal~ki~~~~Pd~l~~~~~~l~~lL-~d~d~~V~~~al~ll~ei~~~~ 105 (252)
+.++.-+.+..|+--.++.+.+...| .+.++.+.+.++-.+..+|+..
T Consensus 105 a~s~~~ic~~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~ 153 (234)
T PF12530_consen 105 AASIRDICCSRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAE 153 (234)
T ss_pred HHHHHHHHHhChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence 56777788999995556788999999 7889999999999999999643
No 244
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=23.76 E-value=1.5e+02 Score=24.03 Aligned_cols=99 Identities=18% Similarity=0.119 Sum_probs=65.4
Q ss_pred HHHHhccc--CCHHHHHHHHHHhhcCC---chHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcC------c
Q psy11027 6 MIRKDLNA--QNQYDAGLALSALACFT---STDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALR------P 74 (252)
Q Consensus 6 ~i~kDL~s--~n~~~~~LAL~~la~i~---~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~------~ 74 (252)
.+-+.|.. ..+.+++.|+=+++.+- ..+.-+.+...+...+..+..--...|+-++.-+|...||+.- .
T Consensus 7 ~lL~~L~~~~~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg 86 (157)
T PF11701_consen 7 TLLTSLDMLRQPEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEG 86 (157)
T ss_dssp HHHHHHHCTTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTT
T ss_pred HHHHHhcccCCCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhh
Confidence 44455543 56677888877776663 2222333455555666554444566788888889999998643 3
Q ss_pred hhHHHHhhhC--CCChhHHHHHHHHHHHHHhh
Q psy11027 75 AFPRLKEKLE--DPDSGVQSAAVNVVCELARK 104 (252)
Q Consensus 75 ~~~~l~~lL~--d~d~~V~~~al~ll~ei~~~ 104 (252)
+.+.+..+.. .++..+..+++-++..-|-+
T Consensus 87 ~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d 118 (157)
T PF11701_consen 87 FLESLLPLASRKSKDRKVQKAALELLSAACID 118 (157)
T ss_dssp HHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc
Confidence 4577777777 68999999999999887743
No 245
>KOG2956|consensus
Probab=23.45 E-value=7.2e+02 Score=24.47 Aligned_cols=94 Identities=17% Similarity=0.232 Sum_probs=62.9
Q ss_pred CHHHHHHH-HHHhhcCCchHhHH----HHHHHHHHhhcC-CChHHHHHHHHHHHHHHhhCCCCcCchh----HHHHhhhC
Q psy11027 15 NQYDAGLA-LSALACFTSTDLAR----DLANDIMMLLTS-TKPYLRKKAVLMMYKVFLKFPDALRPAF----PRLKEKLE 84 (252)
Q Consensus 15 n~~~~~LA-L~~la~i~~~el~~----~l~~~V~~lL~s-~~p~VRKkA~lal~ki~~~~Pd~l~~~~----~~l~~lL~ 84 (252)
.+..-+++ |..+.+-++..+.+ .+...+.+.+++ .++.+||-|.-.+.++.+..|..+.+.. .++.+-=.
T Consensus 302 ~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ 381 (516)
T KOG2956|consen 302 SERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAK 381 (516)
T ss_pred hHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHh
Confidence 34555666 66777766655555 355678888988 5666777777777789999998776543 34444445
Q ss_pred CCChhHHHHHHHH-HHHHHhhCchh
Q psy11027 85 DPDSGVQSAAVNV-VCELARKNPKN 108 (252)
Q Consensus 85 d~d~~V~~~al~l-l~ei~~~~p~~ 108 (252)
|.+.+|+..|.-- +.-++.+.|..
T Consensus 382 ds~~~v~~~Aeed~~~~las~~P~~ 406 (516)
T KOG2956|consen 382 DSQDEVMRVAEEDCLTTLASHLPLQ 406 (516)
T ss_pred CCchhHHHHHHHHHHHHHHhhCchh
Confidence 8888888777654 44555666753
No 246
>KOG1992|consensus
Probab=23.03 E-value=9.2e+02 Score=25.57 Aligned_cols=65 Identities=15% Similarity=0.121 Sum_probs=52.8
Q ss_pred hHHHHHhcccC----CHHHHHHHHHHhhcCC---chHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhC
Q psy11027 4 TNMIRKDLNAQ----NQYDAGLALSALACFT---STDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKF 68 (252)
Q Consensus 4 ~N~i~kDL~s~----n~~~~~LAL~~la~i~---~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~ 68 (252)
+|.+..||.|+ +|..++-|+..+--.+ .++..-.+.+...+.+.+.++.|-+=|+.|+=|+.-..
T Consensus 458 ~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vr 529 (960)
T KOG1992|consen 458 ANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVR 529 (960)
T ss_pred HHHhhHHhccCccccccchhhcccceeeeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccc
Confidence 57889999984 5778899999885444 46666668999999999999999999999998877543
No 247
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=22.09 E-value=1.1e+02 Score=26.08 Aligned_cols=66 Identities=20% Similarity=0.052 Sum_probs=43.9
Q ss_pred hcccCCHHHHHHHHHHhhc-CCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchh
Q psy11027 10 DLNAQNQYDAGLALSALAC-FTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAF 76 (252)
Q Consensus 10 DL~s~n~~~~~LAL~~la~-i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~ 76 (252)
=..|.|...+-.|+-+.-. ....+ .+.+..-+..+++++..+|+|.-.=++--.-+++|+.+..|.
T Consensus 123 W~~s~~~W~rR~ai~~~l~~~~~~~-~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~V~~fl 189 (208)
T cd07064 123 WSTDENFWLRRTAILHQLKYKEKTD-TDLLFEIILANLGSKEFFIRKAIGWALREYSKTNPDWVRDFV 189 (208)
T ss_pred HHcCCcHHHHHHHHHHHHHHHHccC-HHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 3467888888777654322 22222 234555566677788888888777777778899998877765
No 248
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=21.79 E-value=4.5e+02 Score=25.26 Aligned_cols=54 Identities=17% Similarity=0.281 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHhhCC-CCcCchhHHHHhhhCCCC-hhHHHHHHHHHHHHHhhCc
Q psy11027 53 LRKKAVLMMYKVFLKFP-DALRPAFPRLKEKLEDPD-SGVQSAAVNVVCELARKNP 106 (252)
Q Consensus 53 VRKkA~lal~ki~~~~P-d~l~~~~~~l~~lL~d~d-~~V~~~al~ll~ei~~~~p 106 (252)
.|=+|+--+....+.+| +.++..|...+.++..+. ..+..+|+.++.++++..-
T Consensus 6 ~R~~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~ 61 (464)
T PF11864_consen 6 ERIKAAEELCESIQKYPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQD 61 (464)
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccc
Confidence 45566666767666666 556677888888887654 4577888888888887543
No 249
>PHA02855 anti-apoptotic membrane protein; Provisional
Probab=21.71 E-value=1.1e+02 Score=25.70 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=23.1
Q ss_pred HHhhhCCCChhHHHHHHHHHHHHHhhCc
Q psy11027 79 LKEKLEDPDSGVQSAAVNVVCELARKNP 106 (252)
Q Consensus 79 l~~lL~d~d~~V~~~al~ll~ei~~~~p 106 (252)
+..+++|..|+|-+|+++++.-++++..
T Consensus 82 ie~L~~D~rPSVKLA~iSLlSiIiek~~ 109 (180)
T PHA02855 82 IESLNNDNRPSVKLAIISLISMIAEKKG 109 (180)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHhc
Confidence 3345589999999999999999998654
No 250
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=20.97 E-value=2.2e+02 Score=26.08 Aligned_cols=32 Identities=25% Similarity=0.295 Sum_probs=29.1
Q ss_pred chhHHHHhhhCCCChhHHHHHHHHHHHHHhhC
Q psy11027 74 PAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 105 (252)
Q Consensus 74 ~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~ 105 (252)
.-.+++..+|+.+|+.|+.+++.++..+++++
T Consensus 26 sS~e~L~~LL~s~~~dVl~~aL~ll~~l~qr~ 57 (329)
T PF06012_consen 26 SSSEHLNSLLNSTDLDVLLAALRLLLRLAQRY 57 (329)
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHHhhh
Confidence 45789999999999999999999999999874
No 251
>PF03914 CBF: CBF/Mak21 family; InterPro: IPR005612 This domain is present in the CAATT-binding protein which is essential for growth and necessary for 60S ribosomal subunit biogenesis. Other proteins containing this domain stimulate transcription from the HSP70 promoter.
Probab=20.33 E-value=4.2e+02 Score=21.29 Aligned_cols=72 Identities=11% Similarity=0.091 Sum_probs=46.5
Q ss_pred HHHHHHHHHhhcC----CChHHHHHHHHHHHHHHhhCC-CC--cCchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCch
Q psy11027 36 RDLANDIMMLLTS----TKPYLRKKAVLMMYKVFLKFP-DA--LRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK 107 (252)
Q Consensus 36 ~~l~~~V~~lL~s----~~p~VRKkA~lal~ki~~~~P-d~--l~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~ 107 (252)
...+..+.+.+.+ +.++-.+--..++.++++... +. +.-|+.|+.+.-...+++...+.+.++..+.+.+|+
T Consensus 21 ~~FY~~LY~~L~~p~~~~~~~~~~~~l~lL~~~l~~~~~~~~rvaAFiKRLl~~sl~~~~~~~~~~L~~i~~ll~~~p~ 99 (164)
T PF03914_consen 21 DRFYRALYSLLLDPELFSSSDKSALLLNLLDKSLKSDHLPIQRVAAFIKRLLQLSLHLPPSFALAILALIRKLLKRHPN 99 (164)
T ss_pred HHHHHHHHHHHcchhhccccchHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCHH
Confidence 3455666666632 122222335677777774333 21 223668888887778999999999999999988773
No 252
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=20.11 E-value=4.8e+02 Score=21.17 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=18.5
Q ss_pred hHHHHHhcccCCHHHHHHHHHHhhcCCchH
Q psy11027 4 TNMIRKDLNAQNQYDAGLALSALACFTSTD 33 (252)
Q Consensus 4 ~N~i~kDL~s~n~~~~~LAL~~la~i~~~e 33 (252)
.+.+++| .++.++--|++++|-+|--|
T Consensus 16 ~~iLk~e---~s~~iR~E~lr~lGilGALD 42 (160)
T PF11865_consen 16 LNILKTE---QSQSIRREALRVLGILGALD 42 (160)
T ss_pred HHHHHhC---CCHHHHHHHHHHhhhccccC
Confidence 3455665 34778888888888888543
No 253
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=20.03 E-value=3.6e+02 Score=27.51 Aligned_cols=90 Identities=18% Similarity=0.193 Sum_probs=51.6
Q ss_pred HHHhcccCCHHHHHHHHHHhhcCC--chHhHHHHHHHHHHhh----cCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHH
Q psy11027 7 IRKDLNAQNQYDAGLALSALACFT--STDLARDLANDIMMLL----TSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLK 80 (252)
Q Consensus 7 i~kDL~s~n~~~~~LAL~~la~i~--~~el~~~l~~~V~~lL----~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~ 80 (252)
+.+-+.|++.-++--.|+-++-+. ..|+-+++++-+.+-+ -+..+.||+-|+.|+.+.-...-+---...+.+.
T Consensus 96 ~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~~n~l~ 175 (885)
T COG5218 96 LLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENRIVNLLK 175 (885)
T ss_pred HHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHHHHHHHH
Confidence 445566676666665666555443 3455555555554444 4689999999999997754221111001224444
Q ss_pred hhh-CCCChhHHHHHHH
Q psy11027 81 EKL-EDPDSGVQSAAVN 96 (252)
Q Consensus 81 ~lL-~d~d~~V~~~al~ 96 (252)
..+ +|+...|..+|+.
T Consensus 176 ~~vqnDPS~EVRr~all 192 (885)
T COG5218 176 DIVQNDPSDEVRRLALL 192 (885)
T ss_pred HHHhcCcHHHHHHHHHH
Confidence 444 4677777776654
Done!