Query psy11027
Match_columns 252
No_of_seqs 246 out of 968
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 16:16:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11027.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11027hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_A Adaptor protein complex 100.0 4E-33 1.4E-37 272.8 19.8 239 1-240 110-453 (621)
2 1w63_A Adapter-related protein 100.0 1.3E-30 4.4E-35 254.5 17.5 239 1-240 106-434 (618)
3 3tjz_B Coatomer subunit gamma; 100.0 2.1E-28 7E-33 224.8 11.7 180 1-182 103-310 (355)
4 2vgl_B AP-2 complex subunit be 99.9 7.2E-26 2.5E-30 219.4 20.4 236 1-239 85-401 (591)
5 2vgl_B AP-2 complex subunit be 98.9 1.4E-08 4.7E-13 98.1 15.2 231 4-238 15-311 (591)
6 1w63_A Adapter-related protein 98.7 5.7E-08 2E-12 94.4 11.6 108 14-123 289-397 (618)
7 2vgl_A Adaptor protein complex 98.6 3.5E-07 1.2E-11 89.1 13.9 208 17-240 308-552 (621)
8 4hxt_A De novo protein OR329; 98.2 0.0001 3.6E-09 61.2 17.0 131 4-135 4-151 (252)
9 4db6_A Armadillo repeat protei 98.1 3.8E-05 1.3E-09 62.8 12.8 127 5-132 15-158 (210)
10 1oyz_A Hypothetical protein YI 98.1 2.8E-05 9.5E-10 66.9 12.4 126 3-134 24-150 (280)
11 4hxt_A De novo protein OR329; 98.1 8.4E-05 2.9E-09 61.8 15.0 178 4-205 46-245 (252)
12 3ltm_A Alpha-REP4; protein eng 98.1 0.00016 5.5E-09 59.4 15.5 114 4-134 21-134 (211)
13 3ltj_A Alpharep-4; protein eng 98.0 0.00036 1.2E-08 56.8 16.6 114 4-134 16-129 (201)
14 3tjz_B Coatomer subunit gamma; 98.0 4.1E-05 1.4E-09 69.9 11.3 108 18-130 49-157 (355)
15 1wa5_B Importin alpha subunit; 98.0 0.00023 7.8E-09 66.9 16.3 131 4-135 175-322 (530)
16 4db6_A Armadillo repeat protei 98.0 0.00011 3.9E-09 60.0 12.4 127 5-132 57-200 (210)
17 2qk2_A LP04448P; mini spindles 97.9 8.9E-05 3.1E-09 62.7 11.9 116 4-121 58-186 (242)
18 3ltj_A Alpharep-4; protein eng 97.9 0.00017 5.9E-09 58.7 12.9 115 4-135 47-161 (201)
19 3ltm_A Alpha-REP4; protein eng 97.9 0.00018 6.3E-09 59.0 12.6 114 4-134 52-165 (211)
20 4db8_A Armadillo-repeat protei 97.9 0.00012 4E-09 61.5 11.3 130 5-135 57-203 (252)
21 2jdq_A Importin alpha-1 subuni 97.9 0.00086 3E-08 60.6 17.9 129 3-131 21-169 (450)
22 1oyz_A Hypothetical protein YI 97.9 0.00015 5E-09 62.3 12.1 120 4-130 56-177 (280)
23 2qk1_A Protein STU2; STU2P, XM 97.8 0.00017 5.9E-09 62.2 11.6 120 4-123 62-203 (249)
24 1te4_A Conserved protein MTH18 97.8 5.4E-05 1.9E-09 58.3 7.5 110 5-132 15-124 (131)
25 2qk2_A LP04448P; mini spindles 97.8 0.0011 3.9E-08 55.8 16.4 127 5-135 18-156 (242)
26 4db8_A Armadillo-repeat protei 97.7 0.00012 4.2E-09 61.4 9.3 126 4-130 98-240 (252)
27 1te4_A Conserved protein MTH18 97.7 8.6E-06 3E-10 62.9 1.9 85 5-99 45-129 (131)
28 1wa5_B Importin alpha subunit; 97.7 0.0018 6.1E-08 60.7 18.0 130 4-134 132-279 (530)
29 1xqr_A HSPBP1 protein; armadil 97.7 0.00029 1E-08 62.5 10.8 128 7-135 86-232 (296)
30 2qk1_A Protein STU2; STU2P, XM 97.6 0.0035 1.2E-07 53.9 16.9 177 6-198 20-224 (249)
31 4fdd_A Transportin-1; heat rep 97.6 0.00062 2.1E-08 67.6 13.0 117 5-121 362-493 (852)
32 2jdq_A Importin alpha-1 subuni 97.5 0.00054 1.8E-08 62.0 11.2 126 5-131 237-380 (450)
33 4b8j_A Importin subunit alpha- 97.5 0.0079 2.7E-07 56.1 19.1 131 4-135 162-309 (528)
34 4b8j_A Importin subunit alpha- 97.5 0.0025 8.7E-08 59.5 15.4 164 5-177 247-432 (528)
35 1u6g_C TIP120 protein, CAND1; 97.4 0.0018 6E-08 66.9 13.8 128 5-133 51-196 (1230)
36 1b3u_A Protein (protein phosph 97.3 0.0012 4.2E-08 61.5 10.9 117 6-122 168-292 (588)
37 1b3u_A Protein (protein phosph 97.3 0.011 3.8E-07 55.0 17.4 114 7-120 368-489 (588)
38 3tpo_A Importin subunit alpha- 97.2 0.036 1.2E-06 52.1 19.4 131 4-135 164-316 (529)
39 1qgr_A Protein (importin beta 97.1 0.0042 1.4E-07 60.9 12.6 99 5-104 369-480 (876)
40 1u6g_C TIP120 protein, CAND1; 97.1 0.0045 1.5E-07 63.9 13.1 126 5-130 9-152 (1230)
41 3tpo_A Importin subunit alpha- 97.1 0.012 3.9E-07 55.5 14.6 165 6-179 255-440 (529)
42 3ul1_B Importin subunit alpha- 97.0 0.028 9.5E-07 52.7 17.0 130 5-135 146-297 (510)
43 4fdd_A Transportin-1; heat rep 97.0 0.0011 3.8E-08 65.8 7.2 112 10-121 98-225 (852)
44 3ul1_B Importin subunit alpha- 96.9 0.013 4.3E-07 55.1 13.2 166 5-179 235-421 (510)
45 1xqr_A HSPBP1 protein; armadil 96.8 0.0071 2.4E-07 53.5 10.4 95 13-107 136-242 (296)
46 1ibr_B P95, importin beta-1 su 96.8 0.0069 2.3E-07 54.6 10.4 93 15-107 341-441 (462)
47 1ibr_B P95, importin beta-1 su 96.7 0.0056 1.9E-07 55.2 8.9 116 6-121 132-269 (462)
48 2z6h_A Catenin beta-1, beta-ca 96.7 0.11 3.9E-06 49.7 18.3 120 6-125 60-196 (644)
49 2bpt_A Importin beta-1 subunit 96.6 0.036 1.2E-06 54.1 14.9 117 5-122 372-509 (861)
50 2db0_A 253AA long hypothetical 96.6 0.015 5.2E-07 48.7 10.0 89 31-121 138-227 (253)
51 3b2a_A TON_1937, putative unch 96.6 0.018 6E-07 49.8 10.5 124 9-135 82-212 (265)
52 2bpt_A Importin beta-1 subunit 96.5 0.018 6E-07 56.3 11.9 117 4-121 413-551 (861)
53 2z6g_A B-catenin; FULL-length, 96.4 0.0032 1.1E-07 62.6 5.6 124 5-130 118-252 (780)
54 2db0_A 253AA long hypothetical 96.3 0.36 1.2E-05 40.4 16.4 83 36-118 31-114 (253)
55 1jdh_A Beta-catenin; beta-cate 96.2 0.015 5E-07 53.7 8.6 118 4-122 19-154 (529)
56 3b2a_A TON_1937, putative unch 96.0 0.17 5.7E-06 43.7 13.5 116 4-121 117-234 (265)
57 1jdh_A Beta-catenin; beta-cate 95.9 0.12 4.2E-06 47.4 13.6 120 7-126 64-200 (529)
58 1xm9_A Plakophilin 1; armadill 95.9 0.037 1.3E-06 51.3 10.0 117 3-120 3-136 (457)
59 4ffb_C Protein STU2; tubulin f 95.7 0.039 1.3E-06 47.4 8.6 98 8-105 109-214 (278)
60 2z6h_A Catenin beta-1, beta-ca 95.7 0.048 1.6E-06 52.4 10.0 119 4-123 16-152 (644)
61 2of3_A ZYG-9; multifunctional 95.6 0.064 2.2E-06 46.8 9.4 95 11-108 141-241 (266)
62 1qgr_A Protein (importin beta 95.5 0.049 1.7E-06 53.2 9.4 106 5-110 131-253 (876)
63 3grl_A General vesicular trans 95.3 0.071 2.4E-06 52.0 9.8 116 4-121 66-218 (651)
64 2z6g_A B-catenin; FULL-length, 95.0 0.071 2.4E-06 52.8 9.0 115 16-131 566-693 (780)
65 3nmz_A APC variant protein; pr 95.0 0.055 1.9E-06 50.7 7.8 91 20-110 355-457 (458)
66 1wa5_C Importin alpha RE-expor 95.0 0.046 1.6E-06 55.1 7.6 91 13-103 416-525 (960)
67 1xm9_A Plakophilin 1; armadill 94.7 0.13 4.5E-06 47.5 9.4 91 39-129 4-104 (457)
68 3nmw_A APC variant protein; AR 94.5 0.093 3.2E-06 47.3 7.8 92 20-111 239-342 (354)
69 3gs3_A Symplekin, LD45768P; he 94.5 0.31 1.1E-05 42.2 10.7 84 18-101 31-117 (257)
70 3now_A UNC-45 protein, SD10334 94.4 0.22 7.4E-06 50.0 10.8 130 5-135 293-444 (810)
71 4ffb_C Protein STU2; tubulin f 94.4 0.55 1.9E-05 40.0 12.1 99 5-104 58-169 (278)
72 3tt9_A Plakophilin-2; cell adh 94.3 0.16 5.5E-06 43.3 8.4 103 2-104 8-125 (233)
73 1wa5_C Importin alpha RE-expor 94.3 0.25 8.4E-06 49.8 11.1 63 4-66 457-525 (960)
74 3tt9_A Plakophilin-2; cell adh 94.2 0.16 5.6E-06 43.2 8.2 92 39-130 10-113 (233)
75 4ady_A RPN2, 26S proteasome re 94.1 0.13 4.4E-06 52.4 8.3 90 12-107 588-680 (963)
76 3now_A UNC-45 protein, SD10334 93.9 0.21 7.2E-06 50.1 9.5 105 17-122 599-719 (810)
77 3m1i_C Exportin-1; heat repeat 93.4 0.21 7.3E-06 50.8 8.7 103 6-108 455-574 (1049)
78 3u0r_A Apoptosis inhibitor 5; 93.1 0.14 4.7E-06 48.4 6.1 90 15-106 41-132 (507)
79 2iw3_A Elongation factor 3A; a 92.8 1.1 3.8E-05 45.8 12.8 183 11-216 104-297 (986)
80 2x19_B Importin-13; nuclear tr 92.7 0.48 1.6E-05 47.2 10.0 104 12-118 459-571 (963)
81 3l6x_A Catenin delta-1; cateni 92.1 0.43 1.5E-05 46.1 8.4 116 4-120 50-183 (584)
82 3u0r_A Apoptosis inhibitor 5; 91.7 1 3.5E-05 42.5 10.1 81 38-121 30-110 (507)
83 3o2t_A Symplekin; heat repeat, 91.3 0.39 1.3E-05 44.0 6.7 84 18-101 41-127 (386)
84 3l6x_A Catenin delta-1; cateni 91.2 1.5 5.1E-05 42.2 11.2 110 13-123 320-457 (584)
85 3nmw_A APC variant protein; AR 91.1 2 6.8E-05 38.5 11.2 117 6-122 131-274 (354)
86 3gs3_A Symplekin, LD45768P; he 90.7 1.1 3.8E-05 38.6 8.9 90 13-102 64-172 (257)
87 3ibv_A Exportin-T; karyopherin 90.7 0.44 1.5E-05 48.6 7.2 107 14-120 455-583 (980)
88 3nmz_A APC variant protein; pr 90.2 2.9 0.0001 38.8 11.9 118 5-122 246-390 (458)
89 3l9t_A Putative uncharacterize 89.6 0.85 2.9E-05 39.1 7.0 66 42-108 144-212 (240)
90 2x1g_F Cadmus; transport prote 89.6 0.87 3E-05 45.6 8.2 100 14-117 476-586 (971)
91 3opb_A SWI5-dependent HO expre 89.5 4.1 0.00014 40.5 12.8 116 16-132 576-719 (778)
92 2of3_A ZYG-9; multifunctional 89.4 2.7 9.1E-05 36.5 10.2 108 12-121 97-217 (266)
93 4hat_C Exportin-1; heat repeat 88.5 1 3.5E-05 46.2 8.0 99 6-104 455-570 (1023)
94 3opb_A SWI5-dependent HO expre 88.3 1.3 4.4E-05 44.2 8.2 100 5-104 609-729 (778)
95 1x5b_A Signal transducing adap 87.3 2.6 8.9E-05 33.7 8.2 79 57-135 35-119 (163)
96 3o2t_A Symplekin; heat repeat, 87.2 3.1 0.00011 38.0 9.6 80 55-135 42-123 (386)
97 2x19_B Importin-13; nuclear tr 85.0 4.4 0.00015 40.2 10.3 95 10-106 497-602 (963)
98 1t06_A Hypothetical protein; s 83.1 3.2 0.00011 34.9 7.2 67 11-77 117-191 (235)
99 4ady_A RPN2, 26S proteasome re 82.4 7.3 0.00025 39.7 10.5 87 13-106 553-644 (963)
100 4gmo_A Putative uncharacterize 82.3 2.1 7.4E-05 41.5 6.5 113 8-120 40-191 (684)
101 3ldz_A STAM-1, signal transduc 80.5 7.5 0.00026 30.1 7.9 60 4-63 44-111 (140)
102 2b6c_A Hypothetical protein EF 80.0 1.7 5.9E-05 36.2 4.3 86 40-133 127-212 (220)
103 3gjx_A Exportin-1; transport, 79.5 4.7 0.00016 41.6 8.1 91 17-107 497-599 (1073)
104 3l9t_A Putative uncharacterize 78.3 20 0.00067 30.5 10.4 81 12-98 81-163 (240)
105 4gmo_A Putative uncharacterize 78.1 2.7 9.3E-05 40.8 5.7 81 40-121 37-129 (684)
106 1lsh_A Lipovitellin (LV-1N, LV 77.7 1.5 5.1E-05 45.1 3.8 89 5-100 443-540 (1056)
107 1x5b_A Signal transducing adap 77.2 15 0.00051 29.1 8.9 59 4-62 54-121 (163)
108 3zyq_A Hepatocyte growth facto 76.6 8.4 0.00029 32.2 7.6 79 57-135 28-112 (226)
109 3g2s_A C-terminal fragment of 75.2 8.3 0.00028 30.3 6.8 68 3-70 49-130 (149)
110 3jxy_A Alkylpurine DNA glycosy 75.0 2.5 8.5E-05 35.5 3.9 74 39-114 133-206 (232)
111 1dvp_A HRS, hepatocyte growth 75.0 14 0.00049 30.5 8.6 79 57-135 25-109 (220)
112 1mhq_A ADP-ribosylation factor 74.7 8.7 0.0003 30.1 6.8 62 3-64 39-114 (148)
113 3grl_A General vesicular trans 74.5 8.1 0.00028 37.7 7.8 115 7-121 127-264 (651)
114 3ldz_A STAM-1, signal transduc 74.2 12 0.00042 28.8 7.5 77 58-135 26-108 (140)
115 3g2s_A C-terminal fragment of 72.6 15 0.0005 28.8 7.7 79 57-135 31-120 (149)
116 2x1g_F Cadmus; transport prote 72.5 13 0.00044 37.0 9.1 100 21-120 443-555 (971)
117 2b6c_A Hypothetical protein EF 71.1 3.5 0.00012 34.3 3.9 70 7-76 129-198 (220)
118 3a6p_A Exportin-5; exportin-5, 71.1 5.9 0.0002 41.1 6.4 81 37-117 529-627 (1204)
119 3jxy_A Alkylpurine DNA glycosy 70.7 8.1 0.00028 32.2 6.1 80 12-98 71-155 (232)
120 1mhq_A ADP-ribosylation factor 70.2 13 0.00045 29.0 6.9 79 57-135 21-110 (148)
121 1juq_A ADP-ribosylation factor 69.7 17 0.00059 29.0 7.6 80 56-135 32-122 (171)
122 2iw3_A Elongation factor 3A; a 69.3 24 0.00081 36.1 10.1 117 5-121 57-185 (986)
123 3m1i_C Exportin-1; heat repeat 68.8 15 0.00051 37.2 8.6 93 14-106 512-621 (1049)
124 1juq_A ADP-ribosylation factor 68.0 14 0.00049 29.5 6.8 67 3-69 51-131 (171)
125 3ibv_A Exportin-T; karyopherin 64.6 10 0.00035 38.5 6.4 72 13-84 506-588 (980)
126 1lrv_A LRV, leucine-rich repea 64.3 8.3 0.00028 32.7 4.9 68 6-97 102-169 (244)
127 3zyq_A Hepatocyte growth facto 64.0 39 0.0013 28.1 9.0 57 3-63 46-115 (226)
128 1elk_A Target of MYB1; superhe 61.6 44 0.0015 26.1 8.4 79 57-135 36-124 (157)
129 1lrv_A LRV, leucine-rich repea 61.5 7.4 0.00025 33.0 4.1 63 11-97 59-121 (244)
130 4f52_E Glomulin; cullin-ring E 61.0 33 0.0011 33.0 8.9 94 7-102 322-430 (596)
131 1dvp_A HRS, hepatocyte growth 59.4 39 0.0013 27.7 8.2 55 3-61 43-110 (220)
132 1ho8_A Vacuolar ATP synthase s 58.9 10 0.00035 35.6 4.8 56 13-68 416-478 (480)
133 1t06_A Hypothetical protein; s 58.4 13 0.00045 31.1 5.1 88 27-114 87-191 (235)
134 1elk_A Target of MYB1; superhe 55.7 36 0.0012 26.6 7.0 61 3-63 54-127 (157)
135 1vsy_5 Proteasome activator BL 55.6 20 0.0007 36.6 6.8 89 31-119 127-224 (997)
136 1vsy_5 Proteasome activator BL 51.6 11 0.00038 38.5 4.1 117 4-121 803-944 (997)
137 3a6p_A Exportin-5; exportin-5, 50.4 78 0.0027 32.7 10.3 91 12-103 57-162 (1204)
138 3oc3_A Helicase MOT1, MOT1; re 46.9 1.3E+02 0.0046 29.3 10.3 99 3-101 300-402 (800)
139 3dad_A FH1/FH2 domain-containi 45.9 1.6E+02 0.0055 26.1 12.3 104 11-114 169-299 (339)
140 3oc3_A Helicase MOT1, MOT1; re 38.1 50 0.0017 32.2 5.9 97 6-106 267-368 (800)
141 2jqq_A Conserved oligomeric go 33.0 1.6E+02 0.0056 24.0 7.5 87 23-122 115-203 (204)
142 3qml_C Protein SLS1, nucleotid 30.2 83 0.0028 27.7 5.7 115 18-135 44-183 (315)
143 3fga_B Serine/threonine-protei 29.3 1.1E+02 0.0036 28.0 6.4 82 35-116 291-379 (403)
144 1vsy_4 Proteasome activator BL 28.9 1.9E+02 0.0065 28.6 8.8 86 33-118 335-429 (799)
145 3dad_A FH1/FH2 domain-containi 28.8 94 0.0032 27.7 5.9 66 39-104 120-190 (339)
146 3fga_B Serine/threonine-protei 27.5 3.2E+02 0.011 24.7 9.4 74 5-78 296-378 (403)
147 3s4w_B Protein FACD2, fanconi 26.8 1E+02 0.0036 32.5 6.6 87 35-121 398-485 (1323)
148 3gjx_A Exportin-1; transport, 25.8 2.1E+02 0.0073 29.3 8.6 111 8-122 34-161 (1073)
149 2jby_A M11L protein; apoptosis 23.7 82 0.0028 24.0 3.8 28 77-104 79-106 (145)
150 1vdy_A Hypothetical protein (R 23.2 1.3E+02 0.0045 23.1 5.1 38 33-70 45-82 (140)
No 1
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=100.00 E-value=4e-33 Score=272.76 Aligned_cols=239 Identities=21% Similarity=0.340 Sum_probs=199.9
Q ss_pred CcchHHHHHhcccCCHHHHHHHHHHhhcCCchHhHHHHHHHHHHhh--cCCChHHHHHHHHHHHHHHhhCCCCcC--chh
Q psy11027 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLL--TSTKPYLRKKAVLMMYKVFLKFPDALR--PAF 76 (252)
Q Consensus 1 ~L~~N~i~kDL~s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~lL--~s~~p~VRKkA~lal~ki~~~~Pd~l~--~~~ 76 (252)
+|+||+|+|||+|+||+++|+||+++|+++++||++++.++|.+++ .|++|||||+|++|++|+|+.+|+.++ .++
T Consensus 110 ~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~ 189 (621)
T 2vgl_A 110 RLINNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWT 189 (621)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHH
Confidence 4789999999999999999999999999999999999999999999 899999999999999999999999999 788
Q ss_pred HHHHhhhCCCChhHHHHHHHHHHHHHhhCchhhhhhHHHHHHHhhc------C----------CChhHHHHHhhc--ccc
Q psy11027 77 PRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTT------S----------SNNWMLIKIIKL--RLQ 138 (252)
Q Consensus 77 ~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~~l~p~l~~lL~~------~----------~~pwlqikiLkl--rL~ 138 (252)
+++.++|+|+||+|+.+|+++++++++++|+.|.+++|.++++|.+ . ++||+|++++++ +++
T Consensus 190 ~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~ 269 (621)
T 2vgl_A 190 SRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYP 269 (621)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSS
T ss_pred HHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999998877652 2 289999999998 222
Q ss_pred ------------chhhh---------------------hhhhhhc------ccCccchh-chhhHHHHHhcCCCcchhHH
Q psy11027 139 ------------GVFAV---------------------NVVCELA------RKNPKNYL-SLAPVFFKLMTTSSNNWMLI 178 (252)
Q Consensus 139 ------------~v~a~---------------------~v~~e~~------~~n~~~~l-~l~~~l~~lL~~~~nN~~~i 178 (252)
+++.. ++..|.. +.++. ++ ...+.+++||.++++|.||+
T Consensus 270 ~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~-~~~~~~~~L~~~L~~~~~niry~ 348 (621)
T 2vgl_A 270 PPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPN-LLVRACNQLGQFLQHRETNLRYL 348 (621)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHSSCSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHH-HHHHHHHHHHHHhcCCCcchHHH
Confidence 11111 1111111 12222 22 23478889999999999999
Q ss_pred HHH----------------------------------HHhhHHHHHHH------HHHHHHHHhhccChhHHHHHHHhhhh
Q psy11027 179 KII----------------------------------KLVLYAVLYAA------AWICGEFREHLDSPRATLEAMTRRGL 218 (252)
Q Consensus 179 ~li----------------------------------kl~~~e~l~~~------~~iv~~~~~~l~~~~~~~~~~l~~~i 218 (252)
+|- |...+|.++.+ ..|+.++.+|+++.+.-++..+..+|
T Consensus 349 aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I 428 (621)
T 2vgl_A 349 ALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIVLKV 428 (621)
T ss_dssp HHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhhHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 851 11258888887 48999999999999888888888888
Q ss_pred ccCC---ccchHHHHHHHHHHHHHH
Q psy11027 219 SLLP---GHIQAVYVQNMLKILARI 240 (252)
Q Consensus 219 ~~l~---~~~~~~~~~~~~k~~~~~ 240 (252)
..++ +++..|||..+++++...
T Consensus 429 ~~la~k~~~~~~~~v~~Ll~ll~~~ 453 (621)
T 2vgl_A 429 AILAEKYAVDYTWYVDTILNLIRIA 453 (621)
T ss_dssp HHHHHHHCSSTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 8888 678999999999999764
No 2
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.97 E-value=1.3e-30 Score=254.45 Aligned_cols=239 Identities=24% Similarity=0.431 Sum_probs=197.9
Q ss_pred CcchHHHHHhcccCCHHHHHHHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHH
Q psy11027 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLK 80 (252)
Q Consensus 1 ~L~~N~i~kDL~s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~ 80 (252)
+|+||+|+|||+|+||+++++||+++|+++++++++++.+.|.+++.|++|||||+|++|++++|+.+|+.++.+++.+.
T Consensus 106 ~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~ 185 (618)
T 1w63_A 106 LLMTNCIKNDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATK 185 (618)
T ss_dssp HHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTT
T ss_pred HHHHHHHHHhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCChhHHHHHHHHHHHHHhhCch---hhhhhHHHHHHHhhc--------------CCChhHHHHHhhc--ccc---
Q psy11027 81 EKLEDPDSGVQSAAVNVVCELARKNPK---NYLSLAPVFFKLMTT--------------SSNNWMLIKIIKL--RLQ--- 138 (252)
Q Consensus 81 ~lL~d~d~~V~~~al~ll~ei~~~~p~---~~~~l~p~l~~lL~~--------------~~~pwlqikiLkl--rL~--- 138 (252)
++|+|+|++|+.+|+.++.+++..+|+ .|.+++|.++++|.+ +++||+|++++++ +++
T Consensus 186 ~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~ 265 (618)
T 1w63_A 186 NLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND 265 (618)
T ss_dssp TSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTC
T ss_pred HHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCC
Confidence 999999999999999999999988775 688999999998874 5799999999988 222
Q ss_pred --------chhhh--------------------hhhhhhcccCccchhchhhHHHHHhcCCCcchhHHHH----------
Q psy11027 139 --------GVFAV--------------------NVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKI---------- 180 (252)
Q Consensus 139 --------~v~a~--------------------~v~~e~~~~n~~~~l~l~~~l~~lL~~~~nN~~~i~l---------- 180 (252)
+++.. .++..... ++.-.-...+.+.+|+.++++|.||+++
T Consensus 266 ~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~-~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~ 344 (618)
T 1w63_A 266 DDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS-ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTD 344 (618)
T ss_dssp HHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhC
Confidence 11111 11111111 1110012447888999999999999995
Q ss_pred ---------------------HHHhhHHHHHHH------HHHHHHHHhhccChhHHHHHHHhhhhccCC---ccchHHHH
Q psy11027 181 ---------------------IKLVLYAVLYAA------AWICGEFREHLDSPRATLEAMTRRGLSLLP---GHIQAVYV 230 (252)
Q Consensus 181 ---------------------ikl~~~e~l~~~------~~iv~~~~~~l~~~~~~~~~~l~~~i~~l~---~~~~~~~~ 230 (252)
+|..++|.++.+ ..|+.++.+|+.+.+.-++..+...|..++ ++...||+
T Consensus 345 p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v 424 (618)
T 1w63_A 345 HNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHI 424 (618)
T ss_dssp HHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcccccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 223378888887 379999999999888777777777777777 46789999
Q ss_pred HHHHHHHHHH
Q psy11027 231 QNMLKILARI 240 (252)
Q Consensus 231 ~~~~k~~~~~ 240 (252)
..+++++...
T Consensus 425 ~~ll~lL~~~ 434 (618)
T 1w63_A 425 DTIMRVLTTA 434 (618)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 9999888753
No 3
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.95 E-value=2.1e-28 Score=224.79 Aligned_cols=180 Identities=12% Similarity=0.175 Sum_probs=143.2
Q ss_pred CcchHHHHHhcccCCHHHHHHHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHH
Q psy11027 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLK 80 (252)
Q Consensus 1 ~L~~N~i~kDL~s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~ 80 (252)
+|+||+|+||++|+||+++|+||+++|+|..++|++++.+.+.+++.|.+|||||+|++|.+|+|+++||.++.|.+.+.
T Consensus 103 iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~l~ 182 (355)
T 3tjz_B 103 IIVTSSLTKDMTGKEDSYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQ 182 (355)
T ss_dssp GGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHHHH
T ss_pred HHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCChhHHHHHHHHHHHHHhhCchhhhhhHHHHHHHhhcCCChhHHHHHhhc--ccc------------chh-----
Q psy11027 81 EKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKL--RLQ------------GVF----- 141 (252)
Q Consensus 81 ~lL~d~d~~V~~~al~ll~ei~~~~p~~~~~l~p~l~~lL~~~~~pwlqikiLkl--rL~------------~v~----- 141 (252)
++++|+||+|+.+|+.+++++++.++..+..+++.+.+ ...++||.|+.++|+ +++ +.+
T Consensus 183 ~ll~d~n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l~~--~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~ 260 (355)
T 3tjz_B 183 EAASSDNIMVQYHALGLLYHVRKNDRLAVSKMISKFTR--HGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLR 260 (355)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHS--SCCSCHHHHHHHHHHHTCC-----------------CCCC
T ss_pred HHhcCCCccHHHHHHHHHHHHHhhchHHHHHHHHHHhc--CCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHc
Confidence 99999999999999999999998765555555554432 124589999999996 221 011
Q ss_pred ---------hhhhhhhhcccCccchhchhhHHHHHhcCCCcchhHHHHHH
Q psy11027 142 ---------AVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIK 182 (252)
Q Consensus 142 ---------a~~v~~e~~~~n~~~~l~l~~~l~~lL~~~~nN~~~i~lik 182 (252)
|+-+++....-..+..-...+.++.||+++++|.||++|-+
T Consensus 261 ~~~~aVvyEa~k~I~~l~~~~~~~~~~a~~~L~~fLss~d~niryvaLr~ 310 (355)
T 3tjz_B 261 NKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSSPKAALRYAAVRT 310 (355)
T ss_dssp CSSHHHHHHHHHHHTC-----------CCCTHHHHHHSSSSSSHHHHHHC
T ss_pred CCChHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHcCCCchHHHHHHHH
Confidence 12244444332223233445888999999999999999543
No 4
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.94 E-value=7.2e-26 Score=219.43 Aligned_cols=236 Identities=19% Similarity=0.324 Sum_probs=184.7
Q ss_pred CcchHHHHHhcccCCHHHHHHHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcC--chhHH
Q psy11027 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALR--PAFPR 78 (252)
Q Consensus 1 ~L~~N~i~kDL~s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~--~~~~~ 78 (252)
+|+||+++|||+|+||+++++||+++|+++++++++.+.+++.+++.|++|||||+|+.|+.++++.+|+.++ .+++.
T Consensus 85 ~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~ 164 (591)
T 2vgl_B 85 IMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDS 164 (591)
T ss_dssp HTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHH
Confidence 3789999999999999999999999999999999999999999999999999999999999999999999988 47799
Q ss_pred HHhhhCCCChhHHHHHHHHHHHHHhhCchh-hhhhHH----HHHHHhhcCCChhHHHHHhhc--ccc-------------
Q psy11027 79 LKEKLEDPDSGVQSAAVNVVCELARKNPKN-YLSLAP----VFFKLMTTSSNNWMLIKIIKL--RLQ------------- 138 (252)
Q Consensus 79 l~~lL~d~d~~V~~~al~ll~ei~~~~p~~-~~~l~p----~l~~lL~~~~~pwlqikiLkl--rL~------------- 138 (252)
+.++|+|+|++|+.+|+.++.+++..+|+. +..+.+ .+++.+.. ++||+|++++++ +++
T Consensus 165 l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~-~~~~~q~~il~~l~~l~~~~~~~~~~~l~~ 243 (591)
T 2vgl_B 165 LRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNE-CTEWGQIFILDCLSNYNPKDDREAQSICER 243 (591)
T ss_dssp HHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHH-CCHHHHHHHHHHHHTSCCCSHHHHHHHHHH
T ss_pred HHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCC-CCchHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 999999999999999999999999988865 344433 34444444 599999999988 222
Q ss_pred ----------ch--hhhhhhhhhcc---cCccchh-----chhhHHHHHhcCCCcchhHHHH------------------
Q psy11027 139 ----------GV--FAVNVVCELAR---KNPKNYL-----SLAPVFFKLMTTSSNNWMLIKI------------------ 180 (252)
Q Consensus 139 ----------~v--~a~~v~~e~~~---~n~~~~l-----~l~~~l~~lL~~~~nN~~~i~l------------------ 180 (252)
.| -|..++..... .++. .+ .+.+.+.. |.++++|.||+++
T Consensus 244 l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~-~~~~~~~~~~~~L~~-L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~ 321 (591)
T 2vgl_B 244 VTPRLSHANSAVVLSAVKVLMKFLELLPKDSD-YYNMLLKKLAPPLVT-LLSGEPEVQYVALRNINLIVQKRPEILKQEI 321 (591)
T ss_dssp HTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTB-SHHHHHHHTHHHHHH-HTTSCHHHHHHHHHHHHHHHHHCCSTTTTCT
T ss_pred HHHHHcCCChHHHHHHHHHHHHHhhccCCCHH-HHHHHHHHHHHHHHH-HhcCCccHHHHHHHHHHHHHHhChHHHHHHH
Confidence 01 11223333321 2333 21 12233333 4469999999995
Q ss_pred ------------HHHhhHHHHHHH------HHHHHHHHhhccChhHHHHHHHhhhhccCCc---cchHHHHHHHHHHHHH
Q psy11027 181 ------------IKLVLYAVLYAA------AWICGEFREHLDSPRATLEAMTRRGLSLLPG---HIQAVYVQNMLKILAR 239 (252)
Q Consensus 181 ------------ikl~~~e~l~~~------~~iv~~~~~~l~~~~~~~~~~l~~~i~~l~~---~~~~~~~~~~~k~~~~ 239 (252)
+|...+|.++.+ ..|+.++.+|+++.+.-++......|..++. +...||+..+++++..
T Consensus 322 ~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~ 401 (591)
T 2vgl_B 322 KVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQT 401 (591)
T ss_dssp TTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcc
Confidence 122367777766 3799999999999888777777777777773 4579999999988863
No 5
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.93 E-value=1.4e-08 Score=98.06 Aligned_cols=231 Identities=20% Similarity=0.235 Sum_probs=154.7
Q ss_pred hHHHHHhcccCCHHHHHHHHHHhhc--CCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHh
Q psy11027 4 TNMIRKDLNAQNQYDAGLALSALAC--FTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKE 81 (252)
Q Consensus 4 ~N~i~kDL~s~n~~~~~LAL~~la~--i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~ 81 (252)
++.|+++|.+++...+.-|++.+-. .-+.|+.. +.++|.++++++++.+||-+++++..+.+.+||.+...++.+.+
T Consensus 15 ~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~~~-~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~k 93 (591)
T 2vgl_B 15 IFELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSS-LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVK 93 (591)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCCCGG-GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCChHH-HHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHH
Confidence 4789999999999888887766632 12345444 67789999999999999999999999999999998888899999
Q ss_pred hhCCCChhHHHHHHHHHHHHHhhCchhhhhhHHHHHHHhhcCCChhHHHHHhhc-----c------------------cc
Q psy11027 82 KLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKL-----R------------------LQ 138 (252)
Q Consensus 82 lL~d~d~~V~~~al~ll~ei~~~~p~~~~~l~p~l~~lL~~~~~pwlqikiLkl-----r------------------L~ 138 (252)
+|+|+|+.+...|+..+..+. .|+....+.|.+.+.|.+ ++|..+.+.... + |.
T Consensus 94 dL~~~n~~ir~~AL~~L~~i~--~~~~~~~l~~~l~~~L~d-~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~ 170 (591)
T 2vgl_B 94 DCEDPNPLIRALAVRTMGCIR--VDKITEYLCEPLRKCLKD-EDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIA 170 (591)
T ss_dssp GSSSSSHHHHHHHHHHHHTCC--SGGGHHHHHHHHHHHSSC-SCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTS
T ss_pred HcCCCCHHHHHHHHHHHHcCC--hHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhC
Confidence 999999999999988887774 677788888888888864 467665543211 1 11
Q ss_pred ----ch--hhhhhhhhhcccCccc-hhchhh-HHHHHhc--CCCcchhHHHHHHHh------------------------
Q psy11027 139 ----GV--FAVNVVCELARKNPKN-YLSLAP-VFFKLMT--TSSNNWMLIKIIKLV------------------------ 184 (252)
Q Consensus 139 ----~v--~a~~v~~e~~~~n~~~-~l~l~~-~l~~lL~--~~~nN~~~i~likl~------------------------ 184 (252)
.| .|+.++++....+++. ++.+.+ .+.+++. ...++|.-++++|++
T Consensus 171 d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~ 250 (591)
T 2vgl_B 171 DSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSH 250 (591)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCS
T ss_pred CCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcC
Confidence 11 3445677777666654 334433 2444443 246788888776643
Q ss_pred -hHHHHHHHHHHHHHHHhhcc-ChhH---HHHHHHhhhhccCC--ccchHHHHHHHHHHHH
Q psy11027 185 -LYAVLYAAAWICGEFREHLD-SPRA---TLEAMTRRGLSLLP--GHIQAVYVQNMLKILA 238 (252)
Q Consensus 185 -~~e~l~~~~~iv~~~~~~l~-~~~~---~~~~~l~~~i~~l~--~~~~~~~~~~~~k~~~ 238 (252)
...+++.+++.+..+.+++. +++. ..+....+-+..+. +..+++-++++.++..
T Consensus 251 ~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~ 311 (591)
T 2vgl_B 251 ANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQ 311 (591)
T ss_dssp STTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 45666666666666654441 2211 22233222222222 3456777777776654
No 6
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.72 E-value=5.7e-08 Score=94.40 Aligned_cols=108 Identities=13% Similarity=0.093 Sum_probs=72.8
Q ss_pred CCHHHHHHHHHHhhcCCc-hHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhCCCChhHHH
Q psy11027 14 QNQYDAGLALSALACFTS-TDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQS 92 (252)
Q Consensus 14 ~n~~~~~LAL~~la~i~~-~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~d~d~~V~~ 92 (252)
.++.++--|.+++..+.. +++.....+.+.+++.++++.+|..|..++.++.+.+|+.+....+.+...|.|+|..|..
T Consensus 289 ~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~ 368 (618)
T 1w63_A 289 VGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKR 368 (618)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHH
Confidence 445666666666666664 4444445666667777777777777777777777777777776667777777777777777
Q ss_pred HHHHHHHHHHhhCchhhhhhHHHHHHHhhcC
Q psy11027 93 AAVNVVCELARKNPKNYLSLAPVFFKLMTTS 123 (252)
Q Consensus 93 ~al~ll~ei~~~~p~~~~~l~p~l~~lL~~~ 123 (252)
.|+.++..++. ++++..+++.+.+.+...
T Consensus 369 ~alelL~~l~~--~~nv~~iv~eL~~~l~~~ 397 (618)
T 1w63_A 369 RAMELSFALVN--GNNIRGMMKELLYFLDSC 397 (618)
T ss_dssp HHHHHHHHHCC--SSSTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcc--cccHHHHHHHHHHHHHhC
Confidence 77777777764 334555566666665543
No 7
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.63 E-value=3.5e-07 Score=89.14 Aligned_cols=208 Identities=15% Similarity=0.187 Sum_probs=121.2
Q ss_pred HHHHHHHHHhhcCC-chHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCC--CCcCchhHHHHhhhC-CCChhHHH
Q psy11027 17 YDAGLALSALACFT-STDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFP--DALRPAFPRLKEKLE-DPDSGVQS 92 (252)
Q Consensus 17 ~~~~LAL~~la~i~-~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~P--d~l~~~~~~l~~lL~-d~d~~V~~ 92 (252)
-+.--|.+++..+. .+++.+..+..+.+++.++++.+|-.|..++.++....| +.+....+.+...|. |+|+.|..
T Consensus 308 aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~ 387 (621)
T 2vgl_A 308 AVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQ 387 (621)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHH
Confidence 34444444444443 567777777777777777777888888878777777776 344455566666677 77788888
Q ss_pred HHHHHHHHHHhhCchhhhhhHHHHHHHhhcCCChhHHHHHhhc-ccc--------chhh-----------------hhhh
Q psy11027 93 AAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKL-RLQ--------GVFA-----------------VNVV 146 (252)
Q Consensus 93 ~al~ll~ei~~~~p~~~~~l~p~l~~lL~~~~~pwlqikiLkl-rL~--------~v~a-----------------~~v~ 146 (252)
.++.++..++ +++++..++..+.+.+......|...-+.++ +++ ..+. ...+
T Consensus 388 ~aL~lL~~l~--~~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l 465 (621)
T 2vgl_A 388 RAVDLLYAMC--DRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRV 465 (621)
T ss_dssp HHHHHHHHHC--CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHGGGSCSHHHHHH
T ss_pred HHHHHHHHHc--ChhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcccchHHHHHHH
Confidence 8887777776 3455666666666666554333333322222 110 0000 0000
Q ss_pred hhh--cccCccchhchhhHHHHHhcCCCcchhHHHHHHHhhHHHHHHHHHHHHHHHhhccCh-----hHHHHHHHhhhhc
Q psy11027 147 CEL--ARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLVLYAVLYAAAWICGEFREHLDSP-----RATLEAMTRRGLS 219 (252)
Q Consensus 147 ~e~--~~~n~~~~l~l~~~l~~lL~~~~nN~~~i~likl~~~e~l~~~~~iv~~~~~~l~~~-----~~~~~~~l~~~i~ 219 (252)
... ..+..+.|. ...+..++...+..- ..+..++||+|||.+++.+. .+.++.. ..+..
T Consensus 466 ~~ii~~~~~~~~~~--~~~l~~~l~~~~~~~-----------~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l-~~~~~ 531 (621)
T 2vgl_A 466 IQIVINRDDVQGYA--AKTVFEALQAPACHE-----------NLVKVGGYILGEFGNLIAGDPRSSPLIQFNLL-HSKFH 531 (621)
T ss_dssp HHHHGGGCSCHHHH--HHHHHHHHTSSSCCH-----------HHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHH-HHHHT
T ss_pred HHHHhCChhHHHHH--HHHHHHHHcCccchH-----------HHHHHHHHHhcchHHHhcccCCCCHHHHHHHH-HHHhc
Confidence 000 011122121 122233333222211 22346689999999999873 4567654 66677
Q ss_pred cCCccchHHHHHHHHHHHHHH
Q psy11027 220 LLPGHIQAVYVQNMLKILARI 240 (252)
Q Consensus 220 ~l~~~~~~~~~~~~~k~~~~~ 240 (252)
.-++..+++.+++..|+|.+.
T Consensus 532 ~~~~~v~~~~Lta~~Kl~~~~ 552 (621)
T 2vgl_A 532 LCSVPTRALLLSTYIKFVNLF 552 (621)
T ss_dssp TSCHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHHHHC
Confidence 778899999999999998753
No 8
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.19 E-value=0.0001 Score=61.24 Aligned_cols=131 Identities=20% Similarity=0.179 Sum_probs=102.8
Q ss_pred hHHHHHhcccCCHHHHHHHHHHhhcCCc--hHhHH-----HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcC---
Q psy11027 4 TNMIRKDLNAQNQYDAGLALSALACFTS--TDLAR-----DLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALR--- 73 (252)
Q Consensus 4 ~N~i~kDL~s~n~~~~~LAL~~la~i~~--~el~~-----~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~--- 73 (252)
+..+.+-|.++++.++..|+.+++++.. ++..+ ...+.+.+++.++++.+|..|+.++..+...+|+...
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 4567788999999999999999998853 33333 3678889999999999999999999998876565432
Q ss_pred --chhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhh-----hhhHHHHHHHhhcCCChhHHHHHhhc
Q psy11027 74 --PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY-----LSLAPVFFKLMTTSSNNWMLIKIIKL 135 (252)
Q Consensus 74 --~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~-----~~l~p~l~~lL~~~~~pwlqikiLkl 135 (252)
..++.+.++|.++++.+...|+..+..++..+++.. ...+|.++++|.+ ++|..+...+..
T Consensus 84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~ 151 (252)
T 4hxt_A 84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARA 151 (252)
T ss_dssp HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHH
Confidence 457899999999999999999999999997666532 2467888888875 466666655443
No 9
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.13 E-value=3.8e-05 Score=62.83 Aligned_cols=127 Identities=17% Similarity=0.267 Sum_probs=99.8
Q ss_pred HHHHHhcccCCHHHHHHHHHHhhcCC--chHhHH-----HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcC----
Q psy11027 5 NMIRKDLNAQNQYDAGLALSALACFT--STDLAR-----DLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALR---- 73 (252)
Q Consensus 5 N~i~kDL~s~n~~~~~LAL~~la~i~--~~el~~-----~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~---- 73 (252)
..+.+=|.|+|+.++.-|+.+++++. +++..+ ...+.+.++|.++++.+|..|+.++..+...+++...
T Consensus 15 ~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 94 (210)
T 4db6_A 15 PQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 94 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 35667788999999999999999987 344433 2568899999999999999999999998766655322
Q ss_pred -chhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhh-----hhhHHHHHHHhhcCCChhHHHHH
Q psy11027 74 -PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY-----LSLAPVFFKLMTTSSNNWMLIKI 132 (252)
Q Consensus 74 -~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~-----~~l~p~l~~lL~~~~~pwlqiki 132 (252)
..++.+.++|.++|+.+...|+..+..++..+++.. ...+|.++++|.+. ++-.+...
T Consensus 95 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a 158 (210)
T 4db6_A 95 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEA 158 (210)
T ss_dssp TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHH
T ss_pred CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHH
Confidence 367999999999999999999999999998766532 34678888888763 55555433
No 10
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.13 E-value=2.8e-05 Score=66.90 Aligned_cols=126 Identities=11% Similarity=0.066 Sum_probs=97.2
Q ss_pred chHHHHHhcccCCHHHHHHHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHh-
Q psy11027 3 TTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKE- 81 (252)
Q Consensus 3 ~~N~i~kDL~s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~- 81 (252)
.++.+.+.|.++|+.++..|..++++++.++ ..+.+.+++.++++.+|+.|+.++.++-. .++.++..++.+.+
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~~~----~~~~L~~~l~d~~~~vR~~A~~aL~~l~~-~~~~~~~l~~~L~~~ 98 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGGQD----AVRLAIEFCSDKNYIRRDIGAFILGQIKI-CKKCEDNVFNILNNM 98 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCCHH----HHHHHHHHHTCSSHHHHHHHHHHHHHSCC-CTTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCCch----HHHHHHHHHcCCCHHHHHHHHHHHHHhcc-ccccchHHHHHHHHH
Confidence 4678889999999999999999999999765 45566788999999999999999987642 23333344455553
Q ss_pred hhCCCChhHHHHHHHHHHHHHhhCchhhhhhHHHHHHHhhcCCChhHHHHHhh
Q psy11027 82 KLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIK 134 (252)
Q Consensus 82 lL~d~d~~V~~~al~ll~ei~~~~p~~~~~l~p~l~~lL~~~~~pwlqikiLk 134 (252)
+++|+++.|...++..+..+...+|......+|.+.+.|.+ ++|+.+.....
T Consensus 99 ~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d-~~~~vR~~a~~ 150 (280)
T 1oyz_A 99 ALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFD-KSTNVRRATAF 150 (280)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTC-SCHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhC-CCHHHHHHHHH
Confidence 56899999999999999999877765555677888887765 57776654443
No 11
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.13 E-value=8.4e-05 Score=61.82 Aligned_cols=178 Identities=19% Similarity=0.145 Sum_probs=125.0
Q ss_pred hHHHHHhcccCCHHHHHHHHHHhhcCCc--hHhHHH-----HHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcC---
Q psy11027 4 TNMIRKDLNAQNQYDAGLALSALACFTS--TDLARD-----LANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALR--- 73 (252)
Q Consensus 4 ~N~i~kDL~s~n~~~~~LAL~~la~i~~--~el~~~-----l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~--- 73 (252)
+..+.+-+.++++.++..|+.+++++.. ++..+. ..+.+.+++.++++.+|..|+.++..+...+|+...
T Consensus 46 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 125 (252)
T 4hxt_A 46 VEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 125 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4456777889999999999999999884 444442 578889999999999999999999999877666433
Q ss_pred --chhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhh-----hhhHHHHHHHhhcCCChhHHHHHhhccccchhhhhhh
Q psy11027 74 --PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY-----LSLAPVFFKLMTTSSNNWMLIKIIKLRLQGVFAVNVV 146 (252)
Q Consensus 74 --~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~-----~~l~p~l~~lL~~~~~pwlqikiLklrL~~v~a~~v~ 146 (252)
..++.+.++|.++++.+...++..+..++..+++.. ...+|.++++|.+ ++|-.+...+.. +
T Consensus 126 ~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~----------L 194 (252)
T 4hxt_A 126 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARA----------L 194 (252)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHH----------H
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCC-CCHHHHHHHHHH----------H
Confidence 467999999999999999999999999998766532 3477888888874 466666544433 1
Q ss_pred hhhcccCccc--h---hchhhHHHHHhcCCCcchhHHHHHHHhhHHHHHHHHHHHHHHHhhccC
Q psy11027 147 CELARKNPKN--Y---LSLAPVFFKLMTTSSNNWMLIKIIKLVLYAVLYAAAWICGEFREHLDS 205 (252)
Q Consensus 147 ~e~~~~n~~~--~---l~l~~~l~~lL~~~~nN~~~i~likl~~~e~l~~~~~iv~~~~~~l~~ 205 (252)
...+..++.. . -+..+.+.+++.+.+... ...+.|+.+.+..+-..
T Consensus 195 ~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v-------------~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 195 ANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEV-------------QKEAQRALENIKSGGWL 245 (252)
T ss_dssp HHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHH-------------HHHHHHHHHHHHHTCBC
T ss_pred HHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHH-------------HHHHHHHHHHHHcCCCc
Confidence 1111111110 1 123466666776554332 34557777777765443
No 12
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.07 E-value=0.00016 Score=59.38 Aligned_cols=114 Identities=17% Similarity=0.172 Sum_probs=90.5
Q ss_pred hHHHHHhcccCCHHHHHHHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhh
Q psy11027 4 TNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKL 83 (252)
Q Consensus 4 ~N~i~kDL~s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL 83 (252)
+..+.+.|.++++.++..|+..++.++.++.. +.+.+.+.++++.+|..|+.++.++- + +..++.+.+.|
T Consensus 21 ~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~----~~L~~~l~~~~~~vr~~a~~aL~~~~--~----~~~~~~L~~~l 90 (211)
T 3ltm_A 21 VEMYIKNLQDDSYYVRRAAAYALGKIGDERAV----EPLIKALKDEDAWVRRAAADALGQIG--D----ERAVEPLIKAL 90 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGH----HHHHHHTTCSCHHHHHHHHHHHHHHC--C----GGGHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCccHH----HHHHHHHcCCCHHHHHHHHHHHHhhC--C----HHHHHHHHHHH
Confidence 56788889999999999999999999986554 45667888999999999999998763 1 24578889999
Q ss_pred CCCChhHHHHHHHHHHHHHhhCchhhhhhHHHHHHHhhcCCChhHHHHHhh
Q psy11027 84 EDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIK 134 (252)
Q Consensus 84 ~d~d~~V~~~al~ll~ei~~~~p~~~~~l~p~l~~lL~~~~~pwlqikiLk 134 (252)
.|+|+.|...|+..+..+.. + ..+|.+.+.|.+ ++|..+...++
T Consensus 91 ~~~~~~vr~~a~~aL~~~~~--~----~~~~~L~~~l~d-~~~~vr~~a~~ 134 (211)
T 3ltm_A 91 KDEDGWVRQSAAVALGQIGD--E----RAVEPLIKALKD-EDWFVRIAAAF 134 (211)
T ss_dssp TCSSHHHHHHHHHHHHHHCC--G----GGHHHHHHHTTC-SSHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhCc--H----HHHHHHHHHHhC-CCHHHHHHHHH
Confidence 99999999999999888753 2 356778887754 56666654433
No 13
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.02 E-value=0.00036 Score=56.78 Aligned_cols=114 Identities=17% Similarity=0.169 Sum_probs=89.9
Q ss_pred hHHHHHhcccCCHHHHHHHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhh
Q psy11027 4 TNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKL 83 (252)
Q Consensus 4 ~N~i~kDL~s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL 83 (252)
...+.+.|.++|+.++..|+..++.++.++. .+.+.+.+.++++.+|+.|+.++.++- .| ...+.+.+.|
T Consensus 16 ~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~----~~~L~~~l~~~~~~vr~~a~~~L~~~~--~~----~~~~~L~~~l 85 (201)
T 3ltj_A 16 VEMYIKNLQDDSYYVRRAAAYALGKIGDERA----VEPLIKALKDEDAWVRRAAADALGQIG--DE----RAVEPLIKAL 85 (201)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHCCGGG----HHHHHHHTTCSSHHHHHHHHHHHHHHC--CG----GGHHHHHHHT
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhcCChhH----HHHHHHHHcCCCHHHHHHHHHHHHhhC--CH----HHHHHHHHHH
Confidence 4567889999999999999999999998654 455678888999999999999998762 22 4578889999
Q ss_pred CCCChhHHHHHHHHHHHHHhhCchhhhhhHHHHHHHhhcCCChhHHHHHhh
Q psy11027 84 EDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIK 134 (252)
Q Consensus 84 ~d~d~~V~~~al~ll~ei~~~~p~~~~~l~p~l~~lL~~~~~pwlqikiLk 134 (252)
.|+|+.|...|+..+..+.. | ..+|.+.+.|.+ ++|..+....+
T Consensus 86 ~d~~~~vr~~a~~aL~~~~~--~----~~~~~L~~~l~d-~~~~vr~~a~~ 129 (201)
T 3ltj_A 86 KDEDGWVRQSAAVALGQIGD--E----RAVEPLIKALKD-EDWFVRIAAAF 129 (201)
T ss_dssp TCSSHHHHHHHHHHHHHHCC--G----GGHHHHHHHTTC-SSHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhCc--H----HHHHHHHHHHcC-CCHHHHHHHHH
Confidence 99999999999999888742 2 366777777754 46666654433
No 14
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.99 E-value=4.1e-05 Score=69.93 Aligned_cols=108 Identities=12% Similarity=0.166 Sum_probs=81.2
Q ss_pred HHHHHHHHhhc-CCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhCCCChhHHHHHHH
Q psy11027 18 DAGLALSALAC-FTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVN 96 (252)
Q Consensus 18 ~~~LAL~~la~-i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~d~d~~V~~~al~ 96 (252)
.+-+.+-..|. ++..|+. .++++|.+++.+.+..+||-.|+.+.- |-+.|+.+-..++.+.++++|+|+.+.+.|+.
T Consensus 49 ~kll~l~~~G~~f~~~e~t-~lf~~v~kl~~s~d~~lKrLvYLyl~~-~~~~~~e~iLv~Nsl~kDl~~~N~~iR~lALR 126 (355)
T 3tjz_B 49 TKILYLINQGEHLGTTEAT-EAFFAMTKLFQSNDPTLRRMCYLTIKE-MSCIAEDVIIVTSSLTKDMTGKEDSYRGPAVR 126 (355)
T ss_dssp HHHHHHHHHTCCCCHHHHH-HHHHHHHGGGGCCCHHHHHHHHHHHHH-HTTTSSCGGGGHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHCCCCCchhHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHhhcCCCcHhHHHHHHH
Confidence 34566666764 3344444 588999999999999999999999854 54556655577899999999999999999999
Q ss_pred HHHHHHhhCchhhhhhHHHHHHHhhcCCChhHHH
Q psy11027 97 VVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLI 130 (252)
Q Consensus 97 ll~ei~~~~p~~~~~l~p~l~~lL~~~~~pwlqi 130 (252)
.++.+. .|+....+.+.+-+.|.+. +|+...
T Consensus 127 tL~~I~--~~~m~~~l~~~lk~~L~d~-~pyVRk 157 (355)
T 3tjz_B 127 ALCQIT--DSTMLQAIERYMKQAIVDK-VPSVSS 157 (355)
T ss_dssp HHHHHC--CTTTHHHHHHHHHHHHTCS-SHHHHH
T ss_pred HHhcCC--CHHHHHHHHHHHHHHcCCC-CHHHHH
Confidence 888886 5777777888877777653 666544
No 15
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.97 E-value=0.00023 Score=66.86 Aligned_cols=131 Identities=16% Similarity=0.165 Sum_probs=101.0
Q ss_pred hHHHHHhcccCCHHHHHHHHHHhhcCCc--hHhHH-----HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhC-CCCc---
Q psy11027 4 TNMIRKDLNAQNQYDAGLALSALACFTS--TDLAR-----DLANDIMMLLTSTKPYLRKKAVLMMYKVFLKF-PDAL--- 72 (252)
Q Consensus 4 ~N~i~kDL~s~n~~~~~LAL~~la~i~~--~el~~-----~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~-Pd~l--- 72 (252)
+..+.+=|.++++.++..|+.++++++. ++..+ ...+.+.+++.++++.+|+.|+-|+..+.+.. |..-
T Consensus 175 i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 254 (530)
T 1wa5_B 175 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSV 254 (530)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHH
Confidence 3455666778899999999999999874 33322 35688899999999999999999999998765 4321
Q ss_pred -CchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhhh-----hhHHHHHHHhhcCCChhHHHHHhhc
Q psy11027 73 -RPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL-----SLAPVFFKLMTTSSNNWMLIKIIKL 135 (252)
Q Consensus 73 -~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~-----~l~p~l~~lL~~~~~pwlqikiLkl 135 (252)
...++.+.++|.+.|+.|...|+..+..++...++... ..+|.++++|.+ +++..+...++.
T Consensus 255 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~-~~~~v~~~a~~~ 322 (530)
T 1wa5_B 255 VSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH-ESTLVQTPALRA 322 (530)
T ss_dssp HGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHH
T ss_pred HHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCC-CChhhHHHHHHH
Confidence 24678999999999999999999999999976654322 578889988875 466666655544
No 16
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.96 E-value=0.00011 Score=59.97 Aligned_cols=127 Identities=15% Similarity=0.152 Sum_probs=100.2
Q ss_pred HHHHHhcccCCHHHHHHHHHHhhcCC--chHhHHH-----HHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCc-----
Q psy11027 5 NMIRKDLNAQNQYDAGLALSALACFT--STDLARD-----LANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDAL----- 72 (252)
Q Consensus 5 N~i~kDL~s~n~~~~~LAL~~la~i~--~~el~~~-----l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l----- 72 (252)
..+.+=|.++++.++.-|+.+++++. .++..+. ..+.+.++|.++++.+|+.|+.++..+...+++..
T Consensus 57 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 136 (210)
T 4db6_A 57 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 136 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45666788999999999999999987 4444443 45889999999999999999999999987666543
Q ss_pred CchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhh-----hhhHHHHHHHhhcCCChhHHHHH
Q psy11027 73 RPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY-----LSLAPVFFKLMTTSSNNWMLIKI 132 (252)
Q Consensus 73 ~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~-----~~l~p~l~~lL~~~~~pwlqiki 132 (252)
...++.+.++|.++++.+...|+..+..++..+++.. ...+|.+++++.+ +++-.+.+.
T Consensus 137 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a 200 (210)
T 4db6_A 137 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH-ENEKIQKEA 200 (210)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHH
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHH
Confidence 2467999999999999999999999999998766532 2467788887764 466555544
No 17
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.95 E-value=8.9e-05 Score=62.73 Aligned_cols=116 Identities=14% Similarity=0.188 Sum_probs=92.5
Q ss_pred hHHHHHhcc-cCCHHHHHHHHHHhhcCCc---h---HhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchh
Q psy11027 4 TNMIRKDLN-AQNQYDAGLALSALACFTS---T---DLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAF 76 (252)
Q Consensus 4 ~N~i~kDL~-s~n~~~~~LAL~~la~i~~---~---el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~ 76 (252)
.+.+++=+. ++|+.++..|+.+++.+.. + ...+.+.+.+.+.+.++++.||..|.-|+..++...+ +....
T Consensus 58 ~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~~ll 135 (242)
T 2qk2_A 58 VSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LEAQQ 135 (242)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HHHHH
Confidence 456667674 8999999999999987662 3 4456789999999999999999999999999987654 45567
Q ss_pred HHHHhhhCCCChhHHHHHHHHHHHHHhhC-ch-----hhhhhHHHHHHHhh
Q psy11027 77 PRLKEKLEDPDSGVQSAAVNVVCELARKN-PK-----NYLSLAPVFFKLMT 121 (252)
Q Consensus 77 ~~l~~lL~d~d~~V~~~al~ll~ei~~~~-p~-----~~~~l~p~l~~lL~ 121 (252)
+.+...|.++++.|...++..+..++... |+ .+..+.|.+++.|.
T Consensus 136 ~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~ 186 (242)
T 2qk2_A 136 ESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLN 186 (242)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhc
Confidence 89999999999999999999999977654 44 23456666666664
No 18
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=97.92 E-value=0.00017 Score=58.75 Aligned_cols=115 Identities=17% Similarity=0.192 Sum_probs=84.2
Q ss_pred hHHHHHhcccCCHHHHHHHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhh
Q psy11027 4 TNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKL 83 (252)
Q Consensus 4 ~N~i~kDL~s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL 83 (252)
+..+.+-+.++++.++..|+.+++.++.++.. +.+.+.+.++++.||..|+-++.++- . +..++.+.++|
T Consensus 47 ~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~----~~L~~~l~d~~~~vr~~a~~aL~~~~--~----~~~~~~L~~~l 116 (201)
T 3ltj_A 47 VEPLIKALKDEDAWVRRAAADALGQIGDERAV----EPLIKALKDEDGWVRQSAAVALGQIG--D----ERAVEPLIKAL 116 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGH----HHHHHHTTCSSHHHHHHHHHHHHHHC--C----GGGHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHH----HHHHHHHcCCCHHHHHHHHHHHHHhC--c----HHHHHHHHHHH
Confidence 34566777888999999999999988877554 44556788888999999988887752 1 23567788888
Q ss_pred CCCChhHHHHHHHHHHHHHhhCchhhhhhHHHHHHHhhcCCChhHHHHHhhc
Q psy11027 84 EDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKL 135 (252)
Q Consensus 84 ~d~d~~V~~~al~ll~ei~~~~p~~~~~l~p~l~~lL~~~~~pwlqikiLkl 135 (252)
.|+|+.|...|+..+..+.. + ..+|.+.+.|.+ ++|+.+...++.
T Consensus 117 ~d~~~~vr~~a~~aL~~~~~--~----~~~~~L~~~l~d-~~~~vr~~A~~a 161 (201)
T 3ltj_A 117 KDEDWFVRIAAAFALGEIGD--E----RAVEPLIKALKD-EDGWVRQSAADA 161 (201)
T ss_dssp TCSSHHHHHHHHHHHHHHTC--G----GGHHHHHHHTTC-SSHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhCC--H----HHHHHHHHHHcC-CCHHHHHHHHHH
Confidence 88899998888888877742 2 356667777754 466766665554
No 19
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=97.89 E-value=0.00018 Score=59.01 Aligned_cols=114 Identities=17% Similarity=0.197 Sum_probs=90.1
Q ss_pred hHHHHHhcccCCHHHHHHHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhh
Q psy11027 4 TNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKL 83 (252)
Q Consensus 4 ~N~i~kDL~s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL 83 (252)
+..+.+-+.++++.++..|+.+++.++.++.. +.+.+.+.++++.||..|+.++.++- . +...+.+.++|
T Consensus 52 ~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~----~~L~~~l~~~~~~vr~~a~~aL~~~~--~----~~~~~~L~~~l 121 (211)
T 3ltm_A 52 VEPLIKALKDEDAWVRRAAADALGQIGDERAV----EPLIKALKDEDGWVRQSAAVALGQIG--D----ERAVEPLIKAL 121 (211)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGH----HHHHHHTTCSSHHHHHHHHHHHHHHC--C----GGGHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHH----HHHHHHHcCCCHHHHHHHHHHHHHhC--c----HHHHHHHHHHH
Confidence 45667778899999999999999999987655 45567889999999999999998762 1 23578899999
Q ss_pred CCCChhHHHHHHHHHHHHHhhCchhhhhhHHHHHHHhhcCCChhHHHHHhh
Q psy11027 84 EDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIK 134 (252)
Q Consensus 84 ~d~d~~V~~~al~ll~ei~~~~p~~~~~l~p~l~~lL~~~~~pwlqikiLk 134 (252)
+|+|+.|...|+..+..+.. + ..+|.+.++|.+ ++|+.+....+
T Consensus 122 ~d~~~~vr~~a~~aL~~~~~--~----~~~~~L~~~l~d-~~~~vr~~a~~ 165 (211)
T 3ltm_A 122 KDEDWFVRIAAAFALGEIGD--E----RAVEPLIKALKD-EDGWVRQSAAD 165 (211)
T ss_dssp TCSSHHHHHHHHHHHHHHCC--G----GGHHHHHHHTTC-SSHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCC--H----HHHHHHHHHHcC-CCHHHHHHHHH
Confidence 99999999999999988742 2 366778887754 57777665443
No 20
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.87 E-value=0.00012 Score=61.51 Aligned_cols=130 Identities=17% Similarity=0.220 Sum_probs=101.8
Q ss_pred HHHHHhcccCCHHHHHHHHHHhhcCCc--hHhHHH-----HHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCC----cC
Q psy11027 5 NMIRKDLNAQNQYDAGLALSALACFTS--TDLARD-----LANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDA----LR 73 (252)
Q Consensus 5 N~i~kDL~s~n~~~~~LAL~~la~i~~--~el~~~-----l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~----l~ 73 (252)
..+.+=|.++++.++..|+.+++++.. ++..+. ..+.+.+++.++++.+|+.|+.++..+....+.. +.
T Consensus 57 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 136 (252)
T 4db8_A 57 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 136 (252)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHH
Confidence 456677889999999999999999884 454443 5688899999999999999999998887655433 11
Q ss_pred -chhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhh-----hhhHHHHHHHhhcCCChhHHHHHhhc
Q psy11027 74 -PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY-----LSLAPVFFKLMTTSSNNWMLIKIIKL 135 (252)
Q Consensus 74 -~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~-----~~l~p~l~~lL~~~~~pwlqikiLkl 135 (252)
..++.+.++|.++++.|...|+..+..++..+++.. ...+|.++++|.+. +|..+...+..
T Consensus 137 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~ 203 (252)
T 4db8_A 137 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWA 203 (252)
T ss_dssp TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCS-SHHHHHHHHHH
T ss_pred CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCC-CHHHHHHHHHH
Confidence 467999999999999999999999999998665532 35788899888754 77776655443
No 21
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.87 E-value=0.00086 Score=60.60 Aligned_cols=129 Identities=12% Similarity=0.077 Sum_probs=99.0
Q ss_pred chHHHHHhcccCCHHHHHHHHHHhhcC----CchH---hHH--HHHHHHHHhhcCC-ChHHHHHHHHHHHHHHhhCCCCc
Q psy11027 3 TTNMIRKDLNAQNQYDAGLALSALACF----TSTD---LAR--DLANDIMMLLTST-KPYLRKKAVLMMYKVFLKFPDAL 72 (252)
Q Consensus 3 ~~N~i~kDL~s~n~~~~~LAL~~la~i----~~~e---l~~--~l~~~V~~lL~s~-~p~VRKkA~lal~ki~~~~Pd~l 72 (252)
++..+.+.++|+++.++-.|+.++.++ ..++ +.+ .+.+.+.+++.++ ++.+|..|+-++..+...+++..
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 345677888999999999999998775 2332 222 4778888999988 89999999999999987665432
Q ss_pred -----CchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchh---h--hhhHHHHHHHhhcCCChhHHHH
Q psy11027 73 -----RPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKN---Y--LSLAPVFFKLMTTSSNNWMLIK 131 (252)
Q Consensus 73 -----~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~---~--~~l~p~l~~lL~~~~~pwlqik 131 (252)
...++.+.++|.++++.|...|+..+..++...++. . ...+|.++++|.+.+++-.+..
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~ 169 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRN 169 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHH
Confidence 246799999999999999999999999999876542 1 3578899999886445444443
No 22
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=97.87 E-value=0.00015 Score=62.28 Aligned_cols=120 Identities=13% Similarity=0.079 Sum_probs=91.9
Q ss_pred hHHHHHhcccCCHHHHHHHHHHhhcCCc-hHhHHHHHHHHH-HhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHh
Q psy11027 4 TNMIRKDLNAQNQYDAGLALSALACFTS-TDLARDLANDIM-MLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKE 81 (252)
Q Consensus 4 ~N~i~kDL~s~n~~~~~LAL~~la~i~~-~el~~~l~~~V~-~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~ 81 (252)
+..+.+-+.++++.++..|..+++.++. ++-.+.+.+-+. .++.++++.||..|+.++.++-..+|...+...+.+.+
T Consensus 56 ~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~ 135 (280)
T 1oyz_A 56 VRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQI 135 (280)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHH
Confidence 4567778899999999999999999984 444555555555 35678999999999999999987777655567788999
Q ss_pred hhCCCChhHHHHHHHHHHHHHhhCchhhhhhHHHHHHHhhcCCChhHHH
Q psy11027 82 KLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLI 130 (252)
Q Consensus 82 lL~d~d~~V~~~al~ll~ei~~~~p~~~~~l~p~l~~lL~~~~~pwlqi 130 (252)
.|.|+|+.|...|+..+..+.. | ..+|.+.+.|.+ ++|+.+.
T Consensus 136 ~l~d~~~~vR~~a~~aL~~~~~--~----~~~~~L~~~l~d-~~~~vr~ 177 (280)
T 1oyz_A 136 TAFDKSTNVRRATAFAISVIND--K----ATIPLLINLLKD-PNGDVRN 177 (280)
T ss_dssp HTTCSCHHHHHHHHHHHHTC---------CCHHHHHHHHTC-SSHHHHH
T ss_pred HhhCCCHHHHHHHHHHHHhcCC--H----HHHHHHHHHHcC-CCHHHHH
Confidence 9999999999999888877653 2 367778887764 4555444
No 23
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.82 E-value=0.00017 Score=62.16 Aligned_cols=120 Identities=7% Similarity=0.113 Sum_probs=95.4
Q ss_pred hHHHHHhc-ccCCHHHHHHHHHHhhcCCc----hH----hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCC-CC--
Q psy11027 4 TNMIRKDL-NAQNQYDAGLALSALACFTS----TD----LARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFP-DA-- 71 (252)
Q Consensus 4 ~N~i~kDL-~s~n~~~~~LAL~~la~i~~----~e----l~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~P-d~-- 71 (252)
...+++-+ +++|+.++..|+++++.+.. ++ ....+.+.+.+.+.+.++.||..|..|+-.++...+ ..
T Consensus 62 ~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~ 141 (249)
T 2qk1_A 62 LGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASS 141 (249)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTT
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccC
Confidence 45677888 79999999999999987652 33 445688999999999999999999999999998663 22
Q ss_pred --cCchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCc---hh----h-hhhHHHHHHHhhcC
Q psy11027 72 --LRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNP---KN----Y-LSLAPVFFKLMTTS 123 (252)
Q Consensus 72 --l~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p---~~----~-~~l~p~l~~lL~~~ 123 (252)
++..++.+...|.++++.|...++..+..++...+ +. + ..++|.+.+.|...
T Consensus 142 ~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~ 203 (249)
T 2qk1_A 142 GRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDT 203 (249)
T ss_dssp CTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCS
T ss_pred CcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCC
Confidence 33467889999999999999999999999998765 32 3 56777777777543
No 24
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.81 E-value=5.4e-05 Score=58.27 Aligned_cols=110 Identities=15% Similarity=0.097 Sum_probs=77.2
Q ss_pred HHHHHhcccCCHHHHHHHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhC
Q psy11027 5 NMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLE 84 (252)
Q Consensus 5 N~i~kDL~s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~ 84 (252)
+.+.+.|+++|+.++..|+..++.++.+. .+.+.+.+.++++.||..|+.++.++-. +..++.+.+.|.
T Consensus 15 ~~l~~~L~~~~~~vR~~A~~~L~~~~~~~-----~~~L~~~L~d~~~~vR~~A~~aL~~~~~------~~a~~~L~~~L~ 83 (131)
T 1te4_A 15 VPRGSHMADENKWVRRDVSTALSRMGDEA-----FEPLLESLSNEDWRIRGAAAWIIGNFQD------ERAVEPLIKLLE 83 (131)
T ss_dssp ------CCSSCCCSSSSCCSSTTSCSSTT-----HHHHHHGGGCSCHHHHHHHHHHHGGGCS------HHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCchH-----HHHHHHHHcCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHc
Confidence 45677788888888888888888888764 3667788888888888888888876431 234677788888
Q ss_pred CCChhHHHHHHHHHHHHHhhCchhhhhhHHHHHHHhhcCCChhHHHHH
Q psy11027 85 DPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKI 132 (252)
Q Consensus 85 d~d~~V~~~al~ll~ei~~~~p~~~~~l~p~l~~lL~~~~~pwlqiki 132 (252)
|+|+.|...|+..+..+.. + ..+|.+.+.|.+ ++|+.+...
T Consensus 84 d~~~~VR~~A~~aL~~~~~--~----~a~~~L~~~l~d-~~~~vr~~A 124 (131)
T 1te4_A 84 DDSGFVRSGAARSLEQIGG--E----RVRAAMEKLAET-GTGFARKVA 124 (131)
T ss_dssp HCCTHHHHHHHHHHHHHCS--H----HHHHHHHHHTTS-CCTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCc--H----HHHHHHHHHHhC-CCHHHHHHH
Confidence 8888888888888887752 2 356777777754 577766544
No 25
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.81 E-value=0.0011 Score=55.81 Aligned_cols=127 Identities=11% Similarity=0.088 Sum_probs=96.3
Q ss_pred HHHHHhcccCCHHHHHHHHHHhhcCC-------chHhHHHHHHHHHHhhc-CCChHHHHHHHHHHHHHHhhCCCCcC---
Q psy11027 5 NMIRKDLNAQNQYDAGLALSALACFT-------STDLARDLANDIMMLLT-STKPYLRKKAVLMMYKVFLKFPDALR--- 73 (252)
Q Consensus 5 N~i~kDL~s~n~~~~~LAL~~la~i~-------~~el~~~l~~~V~~lL~-s~~p~VRKkA~lal~ki~~~~Pd~l~--- 73 (252)
..+.+.+.|.+...|--|+..++.+. ..++ ..+.+.+.+.+. ++++.||+.|+.|+..+.+.-...+.
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 35677788999999988888885543 2233 467888899995 99999999999999999876554433
Q ss_pred -chhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhhhhhHHHHHHHhhcCCChhHHHHHhhc
Q psy11027 74 -PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKL 135 (252)
Q Consensus 74 -~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~~l~p~l~~lL~~~~~pwlqikiLkl 135 (252)
.+.+.+.+.+.|+++.|..+|...+..++...+ +..+.|.+...|.+ .+|-.+...+..
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~~ll~~l~~~l~~-~~~~vr~~~l~~ 156 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LEAQQESIVESLSN-KNPSVKSETALF 156 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHTTC-SCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcC-CChHHHHHHHHH
Confidence 356888899999999999999999999987543 56788888888875 355444444433
No 26
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.75 E-value=0.00012 Score=61.37 Aligned_cols=126 Identities=16% Similarity=0.154 Sum_probs=97.5
Q ss_pred hHHHHHhcccCCHHHHHHHHHHhhcCCch-H-----hHH-HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCc----
Q psy11027 4 TNMIRKDLNAQNQYDAGLALSALACFTST-D-----LAR-DLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDAL---- 72 (252)
Q Consensus 4 ~N~i~kDL~s~n~~~~~LAL~~la~i~~~-e-----l~~-~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l---- 72 (252)
+..+.+=|.++++.++..|+.+++++... + +.+ ...+.+.+++.++++.+|+.|+.++..+....|+..
T Consensus 98 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 177 (252)
T 4db8_A 98 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 177 (252)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34566778889999999999999998842 2 222 367889999999999999999999999987666543
Q ss_pred -CchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhh-----hhhHHHHHHHhhcCCChhHHH
Q psy11027 73 -RPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY-----LSLAPVFFKLMTTSSNNWMLI 130 (252)
Q Consensus 73 -~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~-----~~l~p~l~~lL~~~~~pwlqi 130 (252)
...++.+.++|.++++.|...|+..+..++..+|+.. ...+|.++++|.+. +|-.+.
T Consensus 178 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~ 240 (252)
T 4db8_A 178 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQK 240 (252)
T ss_dssp HTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHH
T ss_pred HCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHH
Confidence 2467999999999999999999999999997666532 23567777777653 554443
No 27
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.74 E-value=8.6e-06 Score=62.88 Aligned_cols=85 Identities=14% Similarity=0.118 Sum_probs=70.4
Q ss_pred HHHHHhcccCCHHHHHHHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhC
Q psy11027 5 NMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLE 84 (252)
Q Consensus 5 N~i~kDL~s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~ 84 (252)
..+.+-|.++++.++..|..++++++.++. .+.+.+.+.++++.||+.|+.++.++- + +...+.+.++|+
T Consensus 45 ~~L~~~L~d~~~~vR~~A~~aL~~~~~~~a----~~~L~~~L~d~~~~VR~~A~~aL~~~~--~----~~a~~~L~~~l~ 114 (131)
T 1te4_A 45 EPLLESLSNEDWRIRGAAAWIIGNFQDERA----VEPLIKLLEDDSGFVRSGAARSLEQIG--G----ERVRAAMEKLAE 114 (131)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHGGGCSHHH----HHHHHHHHHHCCTHHHHHHHHHHHHHC--S----HHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHcCCCHHHHHHHHHHHHHhC--c----HHHHHHHHHHHh
Confidence 566777889999999999999999998654 556667778999999999999998763 1 235788889999
Q ss_pred CCChhHHHHHHHHHH
Q psy11027 85 DPDSGVQSAAVNVVC 99 (252)
Q Consensus 85 d~d~~V~~~al~ll~ 99 (252)
|+|+.|...|...+.
T Consensus 115 d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 115 TGTGFARKVAVNYLE 129 (131)
T ss_dssp SCCTHHHHHHHHHGG
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999988877654
No 28
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.73 E-value=0.0018 Score=60.71 Aligned_cols=130 Identities=14% Similarity=0.073 Sum_probs=100.1
Q ss_pred hHHHHHhcccC-CHHHHHHHHHHhhcCCc--hHhHHH-----HHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCc---
Q psy11027 4 TNMIRKDLNAQ-NQYDAGLALSALACFTS--TDLARD-----LANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDAL--- 72 (252)
Q Consensus 4 ~N~i~kDL~s~-n~~~~~LAL~~la~i~~--~el~~~-----l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l--- 72 (252)
+..+.+-|.++ ++.++..|+.+++++.. ++..+. ..+.+.+++.++++.+|..|+-++..+....|+.-
T Consensus 132 i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~ 211 (530)
T 1wa5_B 132 VPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYV 211 (530)
T ss_dssp HHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHH
Confidence 34566667776 89999999999999885 444443 46788899999999999999999999987655421
Q ss_pred --CchhHHHHhhhCCCChhHHHHHHHHHHHHHhhC-ch----hhhhhHHHHHHHhhcCCChhHHHHHhh
Q psy11027 73 --RPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN-PK----NYLSLAPVFFKLMTTSSNNWMLIKIIK 134 (252)
Q Consensus 73 --~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~-p~----~~~~l~p~l~~lL~~~~~pwlqikiLk 134 (252)
...++.+.++|.+.++.|...|+..+..++... |. .....+|.++++|.+ +++..+...+.
T Consensus 212 ~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~-~d~~v~~~a~~ 279 (530)
T 1wa5_B 212 LQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS-MDTETLVDACW 279 (530)
T ss_dssp HHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTC-CCHHHHHHHHH
T ss_pred HHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcC-CCHHHHHHHHH
Confidence 246789999999999999999999999999754 42 235688999998875 36665554443
No 29
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.65 E-value=0.00029 Score=62.47 Aligned_cols=128 Identities=12% Similarity=0.114 Sum_probs=99.8
Q ss_pred HHH-hcccCCHHHHHHHHHHhhcCC--chHhHH-----HHHHHHHHhhcC-CChHHHHHHHHHHHHHHhhCCCCcC----
Q psy11027 7 IRK-DLNAQNQYDAGLALSALACFT--STDLAR-----DLANDIMMLLTS-TKPYLRKKAVLMMYKVFLKFPDALR---- 73 (252)
Q Consensus 7 i~k-DL~s~n~~~~~LAL~~la~i~--~~el~~-----~l~~~V~~lL~s-~~p~VRKkA~lal~ki~~~~Pd~l~---- 73 (252)
+.+ -|.|+++.++.-|..+++++. +++.-+ ...+.+.+++.+ +++.+|++|+-|+..+.+.+|+...
T Consensus 86 Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~ 165 (296)
T 1xqr_A 86 LVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLR 165 (296)
T ss_dssp HHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 344 788999999999999999986 344332 255788888885 5899999999999999988776332
Q ss_pred -chhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhh-----hhhHHHHHHHhhcCCChhHHHHHhhc
Q psy11027 74 -PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY-----LSLAPVFFKLMTTSSNNWMLIKIIKL 135 (252)
Q Consensus 74 -~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~-----~~l~p~l~~lL~~~~~pwlqikiLkl 135 (252)
..++.+.++|.++|+.|...|+.++..++..+++.. ...+|.++++|.+. ++=.|.+.++.
T Consensus 166 ~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~-d~~v~~~al~a 232 (296)
T 1xqr_A 166 LDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTE-HSPFHEHVLGA 232 (296)
T ss_dssp TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSC-CSTHHHHHHHH
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCC-ChhHHHHHHHH
Confidence 467899999999999999999999999998877532 35778999988753 55555555443
No 30
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.62 E-value=0.0035 Score=53.85 Aligned_cols=177 Identities=12% Similarity=0.140 Sum_probs=119.1
Q ss_pred HHHHhcccCCHHHHHHHHHHhhc-CC--chHhH------HHHHHHHHHhh-cCCChHHHHHHHHHHHHHHhhCC-CCcC-
Q psy11027 6 MIRKDLNAQNQYDAGLALSALAC-FT--STDLA------RDLANDIMMLL-TSTKPYLRKKAVLMMYKVFLKFP-DALR- 73 (252)
Q Consensus 6 ~i~kDL~s~n~~~~~LAL~~la~-i~--~~el~------~~l~~~V~~lL-~s~~p~VRKkA~lal~ki~~~~P-d~l~- 73 (252)
.+..-+.|++...|--|+..++. +. .+++. ..+...+.+.+ .++++.||..|+.|+..+-..-. +.+.
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 35566789999999999999988 64 33443 36788888999 79999999999999999987665 4444
Q ss_pred c----hhHHHHhhhCCCChhHHHHHHHHHHHHHhhC-ch---h-hhhhHHHHHHHhhcCCChhHHHHH--hhccccchhh
Q psy11027 74 P----AFPRLKEKLEDPDSGVQSAAVNVVCELARKN-PK---N-YLSLAPVFFKLMTTSSNNWMLIKI--IKLRLQGVFA 142 (252)
Q Consensus 74 ~----~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~-p~---~-~~~l~p~l~~lL~~~~~pwlqiki--LklrL~~v~a 142 (252)
. ..+.+.+.+.|+.+.|..++...+..++..- |. . ...+.+.++..|.+. .| |+|. +++
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k--~~-~vk~~al~~------- 169 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK--TP-QIRMECTQL------- 169 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS--SH-HHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC--Ch-HHHHHHHHH-------
Confidence 3 4578888899999999999888888888754 32 1 345777787777653 45 5433 222
Q ss_pred hhhhhhhcccCcc---chh--chhhHHHHHhcCCCcchhHHHHHHHhhHHHHHHHHHHHHH
Q psy11027 143 VNVVCELARKNPK---NYL--SLAPVFFKLMTTSSNNWMLIKIIKLVLYAVLYAAAWICGE 198 (252)
Q Consensus 143 ~~v~~e~~~~n~~---~~l--~l~~~l~~lL~~~~nN~~~i~likl~~~e~l~~~~~iv~~ 198 (252)
...+.+.+...|. .|+ .+.|.+.++|..++...|--+ .+.+-++.+++|+
T Consensus 170 l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA------~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 170 FNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIG------FESFAILIKIFGM 224 (249)
T ss_dssp HHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHH------HHHHHHHHHHHCS
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHH------HHHHHHHHHHhCH
Confidence 1122222222112 133 577889999977755554433 4445555555554
No 31
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.57 E-value=0.00062 Score=67.64 Aligned_cols=117 Identities=13% Similarity=0.162 Sum_probs=88.1
Q ss_pred HHHHHhcccCCHHHHHHHHHHhhcCCc------hHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCC-----CcC
Q psy11027 5 NMIRKDLNAQNQYDAGLALSALACFTS------TDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPD-----ALR 73 (252)
Q Consensus 5 N~i~kDL~s~n~~~~~LAL~~la~i~~------~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd-----~l~ 73 (252)
..+.+=+.|+++.++-.|+.+++++.. ....+.+.+.+.+++.++++.||+.|+-|+.++....++ .+.
T Consensus 362 ~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~ 441 (852)
T 4fdd_A 362 PLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLK 441 (852)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 345556788999999999999999873 134567889999999999999999999999988775432 223
Q ss_pred chhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhh----hhhHHHHHHHhh
Q psy11027 74 PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY----LSLAPVFFKLMT 121 (252)
Q Consensus 74 ~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~----~~l~p~l~~lL~ 121 (252)
...+.+.+.|.|+++.|..+|+..+..+++..++.. ..+.+.+.+.+.
T Consensus 442 ~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~ 493 (852)
T 4fdd_A 442 PLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFS 493 (852)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHH
Confidence 456778888889999999999999988886544333 334444444544
No 32
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.55 E-value=0.00054 Score=61.99 Aligned_cols=126 Identities=14% Similarity=0.157 Sum_probs=96.3
Q ss_pred HHHHHhcccCCHHHHHHHHHHhhcCCc--hHhHH-----HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcC----
Q psy11027 5 NMIRKDLNAQNQYDAGLALSALACFTS--TDLAR-----DLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALR---- 73 (252)
Q Consensus 5 N~i~kDL~s~n~~~~~LAL~~la~i~~--~el~~-----~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~---- 73 (252)
..+.+=+.++++.++.-|+.+++++.. ++..+ .+.+.+.+++.++++.+|+.|+.++..+-..+++...
T Consensus 237 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~ 316 (450)
T 2jdq_A 237 RRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVID 316 (450)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345555678899999999999999874 33332 3678889999999999999999999998865554332
Q ss_pred -chhHHHHhhhCCCChhHHHHHHHHHHHHHhh-Cchhh-----hhhHHHHHHHhhcCCChhHHHH
Q psy11027 74 -PAFPRLKEKLEDPDSGVQSAAVNVVCELARK-NPKNY-----LSLAPVFFKLMTTSSNNWMLIK 131 (252)
Q Consensus 74 -~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~-~p~~~-----~~l~p~l~~lL~~~~~pwlqik 131 (252)
..++.+.++|.|+++.|...|+..+..++.. +|+.. ...+|.++++|... ++-.+..
T Consensus 317 ~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~ 380 (450)
T 2jdq_A 317 ANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVM-DSKIVQV 380 (450)
T ss_dssp TTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSS-CHHHHHH
T ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCC-CHHHHHH
Confidence 4678899999999999999999999999876 45432 24778888888753 5544443
No 33
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.52 E-value=0.0079 Score=56.08 Aligned_cols=131 Identities=18% Similarity=0.183 Sum_probs=100.6
Q ss_pred hHHHHHhcccCCHHHHHHHHHHhhcCCc--hHhHHH-----HHHHHHHhh-cCCChHHHHHHHHHHHHHHhhCCCCc---
Q psy11027 4 TNMIRKDLNAQNQYDAGLALSALACFTS--TDLARD-----LANDIMMLL-TSTKPYLRKKAVLMMYKVFLKFPDAL--- 72 (252)
Q Consensus 4 ~N~i~kDL~s~n~~~~~LAL~~la~i~~--~el~~~-----l~~~V~~lL-~s~~p~VRKkA~lal~ki~~~~Pd~l--- 72 (252)
+..+.+=|.++++.++..|+.++++++. ++..+. ..+.+.+++ .++++.+++.|+-++..+....|...
T Consensus 162 i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 241 (528)
T 4b8j_A 162 VPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQ 241 (528)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHH
Confidence 3456677888999999999999999873 333222 456788888 67899999999999999998766432
Q ss_pred -CchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhh-----hhhHHHHHHHhhcCCChhHHHHHhhc
Q psy11027 73 -RPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY-----LSLAPVFFKLMTTSSNNWMLIKIIKL 135 (252)
Q Consensus 73 -~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~-----~~l~p~l~~lL~~~~~pwlqikiLkl 135 (252)
...++.+.++|.+.|+.|...|+..+..++...++.. ...+|.++++|.+. ++..+...++.
T Consensus 242 ~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~-~~~v~~~a~~~ 309 (528)
T 4b8j_A 242 TRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHP-SPSVLIPALRT 309 (528)
T ss_dssp HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCC-ChhHHHHHHHH
Confidence 3567999999999999999999999999987654422 24788999998764 56666655554
No 34
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.49 E-value=0.0025 Score=59.46 Aligned_cols=164 Identities=12% Similarity=0.110 Sum_probs=110.9
Q ss_pred HHHHHhcccCCHHHHHHHHHHhhcCCc--hHhHH-----HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcC----
Q psy11027 5 NMIRKDLNAQNQYDAGLALSALACFTS--TDLAR-----DLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALR---- 73 (252)
Q Consensus 5 N~i~kDL~s~n~~~~~LAL~~la~i~~--~el~~-----~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~---- 73 (252)
..+.+=+.++++.++.-|+.+++++.. ++..+ .+.+.+.+++.++++.+|..|+-++..+...+++...
T Consensus 247 ~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 326 (528)
T 4b8j_A 247 PALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIID 326 (528)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345556778899999999999998873 33322 2567889999999999999999999888775554322
Q ss_pred -chhHHHHhhhCCC-ChhHHHHHHHHHHHHHhhCchhh-----hhhHHHHHHHhhcCCChhHHHHHhhccccchhhhhhh
Q psy11027 74 -PAFPRLKEKLEDP-DSGVQSAAVNVVCELARKNPKNY-----LSLAPVFFKLMTTSSNNWMLIKIIKLRLQGVFAVNVV 146 (252)
Q Consensus 74 -~~~~~l~~lL~d~-d~~V~~~al~ll~ei~~~~p~~~-----~~l~p~l~~lL~~~~~pwlqikiLklrL~~v~a~~v~ 146 (252)
..++.+.++|.+. ++.|...|+..+..++..+++.. ..++|.++++|.+. ++-.+...... ..-+
T Consensus 327 ~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~a-------L~nl 398 (528)
T 4b8j_A 327 HQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWA-------ISNA 398 (528)
T ss_dssp TTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHH-------HHHH
T ss_pred hhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHH-------HHHH
Confidence 3578899999888 99999999999999987665432 25778889888764 55555433322 1111
Q ss_pred hhhcc-cCccchh---chhhHHHHHhcCCCcchhH
Q psy11027 147 CELAR-KNPKNYL---SLAPVFFKLMTTSSNNWML 177 (252)
Q Consensus 147 ~e~~~-~n~~~~l---~l~~~l~~lL~~~~nN~~~ 177 (252)
+...+ .+.. ++ +..+.+..+|.+.+...+.
T Consensus 399 ~~~~~~~~~~-~l~~~~~i~~L~~lL~~~d~~v~~ 432 (528)
T 4b8j_A 399 TSGGSHDQIK-YLVSEGCIKPLCDLLICPDIRIVT 432 (528)
T ss_dssp HHHSCHHHHH-HHHHTTCHHHHHHGGGCSCHHHHH
T ss_pred HcCCCHHHHH-HHHHCCCHHHHHHHHcCCCHHHHH
Confidence 22211 1111 22 4457777888776554433
No 35
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.38 E-value=0.0018 Score=66.94 Aligned_cols=128 Identities=18% Similarity=0.224 Sum_probs=95.4
Q ss_pred HHHHHhcccCCHHHHHHHHHHhhcCC---chHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCC----------
Q psy11027 5 NMIRKDLNAQNQYDAGLALSALACFT---STDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDA---------- 71 (252)
Q Consensus 5 N~i~kDL~s~n~~~~~LAL~~la~i~---~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~---------- 71 (252)
..+.+-+.++|+.+|..|..+++.+. .++..+.+.+.+.+.+.++++.+|..|+.|+..+....+..
T Consensus 51 ~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~ 130 (1230)
T 1u6g_C 51 KMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV 130 (1230)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHH
Confidence 45666778999999999998887754 34566778888999999999999999999999999887653
Q ss_pred cCchhHHHHhhhCC-CChhHHHHHHHHHHHHHhhCchhhhh----hHHHHHHHhhcCCChhHHHHHh
Q psy11027 72 LRPAFPRLKEKLED-PDSGVQSAAVNVVCELARKNPKNYLS----LAPVFFKLMTTSSNNWMLIKII 133 (252)
Q Consensus 72 l~~~~~~l~~lL~d-~d~~V~~~al~ll~ei~~~~p~~~~~----l~p~l~~lL~~~~~pwlqikiL 133 (252)
.+..+|.+.+.+.| +++.+...|+..+.+++...++.+.+ +.+.++..|.+ ++++.+.+.+
T Consensus 131 ~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~-~~~~vR~~a~ 196 (1230)
T 1u6g_C 131 CKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTS-PRLAVRKRTI 196 (1230)
T ss_dssp HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGC-SSHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcC-CcHHHHHHHH
Confidence 33456788888884 88999999999999999876654433 34444444443 4566655543
No 36
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=97.32 E-value=0.0012 Score=61.50 Aligned_cols=117 Identities=20% Similarity=0.218 Sum_probs=88.5
Q ss_pred HHHHhcccCCHHHHHHHHHHhhcCC----chHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCC--cCchhHHH
Q psy11027 6 MIRKDLNAQNQYDAGLALSALACFT----STDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDA--LRPAFPRL 79 (252)
Q Consensus 6 ~i~kDL~s~n~~~~~LAL~~la~i~----~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~--l~~~~~~l 79 (252)
.+.+-++++++.++..|..+++.+. .+...+.+.+.+.+++++.++.||+.|+.++.++....|+- .+...|.+
T Consensus 168 ~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l 247 (588)
T 1b3u_A 168 YFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTL 247 (588)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3445557889999999999998764 34455678888889999999999999999999988876642 23456888
Q ss_pred HhhhCCCChhHHHHHHHHHHHHHhhC-chhh-hhhHHHHHHHhhc
Q psy11027 80 KEKLEDPDSGVQSAAVNVVCELARKN-PKNY-LSLAPVFFKLMTT 122 (252)
Q Consensus 80 ~~lL~d~d~~V~~~al~ll~ei~~~~-p~~~-~~l~p~l~~lL~~ 122 (252)
.++++|++..|..+++..+..++... ++.+ ..+.|.+.+++..
T Consensus 248 ~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d 292 (588)
T 1b3u_A 248 RQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKD 292 (588)
T ss_dssp HHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTC
T ss_pred HHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCC
Confidence 88889999999999999888887643 2322 3567777777754
No 37
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=97.32 E-value=0.011 Score=54.98 Aligned_cols=114 Identities=17% Similarity=0.090 Sum_probs=80.1
Q ss_pred HHHhcccCCHHHHHHHHHHhhcCC----chHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCC-CcC-chhHHHH
Q psy11027 7 IRKDLNAQNQYDAGLALSALACFT----STDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPD-ALR-PAFPRLK 80 (252)
Q Consensus 7 i~kDL~s~n~~~~~LAL~~la~i~----~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd-~l~-~~~~~l~ 80 (252)
+.+=++++++.++..|+.+++.+. ...+.+.+.+.+.+++.+++..+|..++-++..+.+..+. ... ...+.+.
T Consensus 368 l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~ 447 (588)
T 1b3u_A 368 FLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCM 447 (588)
T ss_dssp HHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHH
T ss_pred HHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 334456778888888887776543 3345667888888888888888888888888887765443 222 3567788
Q ss_pred hhhCCCChhHHHHHHHHHHHHHhhCchh--hhhhHHHHHHHh
Q psy11027 81 EKLEDPDSGVQSAAVNVVCELARKNPKN--YLSLAPVFFKLM 120 (252)
Q Consensus 81 ~lL~d~d~~V~~~al~ll~ei~~~~p~~--~~~l~p~l~~lL 120 (252)
+.|.|++..|..+|+..+..++...++. ...+.|.+.+++
T Consensus 448 ~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~ 489 (588)
T 1b3u_A 448 AWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMS 489 (588)
T ss_dssp HGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTT
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh
Confidence 8888888888888888888887654332 245666666544
No 38
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.18 E-value=0.036 Score=52.10 Aligned_cols=131 Identities=12% Similarity=0.105 Sum_probs=92.7
Q ss_pred hHHHHHhcccCCHHHHHHHHHHhhcCC--chHhHHHH-----HHHHHHhhcCCC-----hHHHHHHHHHHHHHHhhCCCC
Q psy11027 4 TNMIRKDLNAQNQYDAGLALSALACFT--STDLARDL-----ANDIMMLLTSTK-----PYLRKKAVLMMYKVFLKFPDA 71 (252)
Q Consensus 4 ~N~i~kDL~s~n~~~~~LAL~~la~i~--~~el~~~l-----~~~V~~lL~s~~-----p~VRKkA~lal~ki~~~~Pd~ 71 (252)
+..+.+=|.|+++.++-.|+.+++|+. +++....+ .+.+..++.+++ ..+.+.|+.++..+.+.....
T Consensus 164 ip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~ 243 (529)
T 3tpo_A 164 IPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPA 243 (529)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccch
Confidence 345566688999999999999999986 34444333 466778887543 346677777777776644322
Q ss_pred c-----CchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhh-----hhhHHHHHHHhhcCCChhHHHHHhhc
Q psy11027 72 L-----RPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY-----LSLAPVFFKLMTTSSNNWMLIKIIKL 135 (252)
Q Consensus 72 l-----~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~-----~~l~p~l~~lL~~~~~pwlqikiLkl 135 (252)
. ...+|.+.++|.++++.|...|+..+..++...++.. ...+|.++++|.+ +++-.+...++.
T Consensus 244 ~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~-~~~~v~~~a~~a 316 (529)
T 3tpo_A 244 PPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA-TELPIVTPALRA 316 (529)
T ss_dssp CCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTC-SCHHHHHHHHHH
T ss_pred hhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcC-CChhHHHHHHHH
Confidence 2 2356889999999999999999999999987654421 3577888888875 366666665554
No 39
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.11 E-value=0.0042 Score=60.92 Aligned_cols=99 Identities=19% Similarity=0.266 Sum_probs=78.0
Q ss_pred HHHHHhcccCCHHHHHHHHHHhhcCCc---hH----hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCC------
Q psy11027 5 NMIRKDLNAQNQYDAGLALSALACFTS---TD----LARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDA------ 71 (252)
Q Consensus 5 N~i~kDL~s~n~~~~~LAL~~la~i~~---~e----l~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~------ 71 (252)
+.+.+-+.++++.++-.|+.+++++.. ++ ..+.+.+.+.+.+.++++.||+.|+.++.++....|+.
T Consensus 369 ~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 448 (876)
T 1qgr_A 369 PFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY 448 (876)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT
T ss_pred HHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH
Confidence 455666788999999999999988774 23 23457788888999999999999999999999886643
Q ss_pred cCchhHHHHhhhCCCChhHHHHHHHHHHHHHhh
Q psy11027 72 LRPAFPRLKEKLEDPDSGVQSAAVNVVCELARK 104 (252)
Q Consensus 72 l~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~ 104 (252)
+...++.+.+.|.|+ +.|...++..+..++..
T Consensus 449 l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 449 LAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence 334567788888775 88888888888877754
No 40
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.09 E-value=0.0045 Score=63.92 Aligned_cols=126 Identities=10% Similarity=0.068 Sum_probs=97.1
Q ss_pred HHHHHhcccCCHHHHHHHHHHhhcCC-------chHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCC-CcCchh
Q psy11027 5 NMIRKDLNAQNQYDAGLALSALACFT-------STDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPD-ALRPAF 76 (252)
Q Consensus 5 N~i~kDL~s~n~~~~~LAL~~la~i~-------~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd-~l~~~~ 76 (252)
+.+...+.|+++.+|..|+..+.+.- .++..+.+.+.+.+.+.++++.+|+.|+.|+..+....|+ .+...+
T Consensus 9 ~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~ 88 (1230)
T 1u6g_C 9 SNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIV 88 (1230)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 45666699999999999998886532 2244567888899999999999999999999999987776 223456
Q ss_pred HHHHhhhCCCChhHHHHHHHHHHHHHhhCch----------hhhhhHHHHHHHhhcCCChhHHH
Q psy11027 77 PRLKEKLEDPDSGVQSAAVNVVCELARKNPK----------NYLSLAPVFFKLMTTSSNNWMLI 130 (252)
Q Consensus 77 ~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~----------~~~~l~p~l~~lL~~~~~pwlqi 130 (252)
+.+.+.|.|+++.|..+|...+..++...+. .+..+.|.+++.+.+++++-.+.
T Consensus 89 ~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~ 152 (1230)
T 1u6g_C 89 DTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQL 152 (1230)
T ss_dssp HHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHH
Confidence 7788888899999999999999999876543 36778888888887544443333
No 41
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.05 E-value=0.012 Score=55.51 Aligned_cols=165 Identities=11% Similarity=0.147 Sum_probs=102.4
Q ss_pred HHHHhcccCCHHHHHHHHHHhhcCC--chHhHHH-----HHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCc-----C
Q psy11027 6 MIRKDLNAQNQYDAGLALSALACFT--STDLARD-----LANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDAL-----R 73 (252)
Q Consensus 6 ~i~kDL~s~n~~~~~LAL~~la~i~--~~el~~~-----l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l-----~ 73 (252)
.+.+=+.++++.++.-|..+++++. ..+..+. +.+.+.+++.++++.++..|+.|+..+...+++.. .
T Consensus 255 ~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~ 334 (529)
T 3tpo_A 255 TLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDA 334 (529)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhc
Confidence 4455567788888877777777655 3333332 45778888888888899888888887765554322 1
Q ss_pred chhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhh-----hhhHHHHHHHhhcCCChhHHHHHhhccccchhhhhhhhh
Q psy11027 74 PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY-----LSLAPVFFKLMTTSSNNWMLIKIIKLRLQGVFAVNVVCE 148 (252)
Q Consensus 74 ~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~-----~~l~p~l~~lL~~~~~pwlqikiLklrL~~v~a~~v~~e 148 (252)
...+.+.++|.++++.+...|+..+..++..+++.. ..++|.++.+|.+. ++-.+.... .|..-++.
T Consensus 335 g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~-------~aL~nl~~ 406 (529)
T 3tpo_A 335 GALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAA-------WAITNYTS 406 (529)
T ss_dssp TGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHH-------HHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHH-------HHHHHHHc
Confidence 356788888888888888888888888887666532 24677888877653 322222111 11111111
Q ss_pred hcc-cCccchh---chhhHHHHHhcCCCcchhHHH
Q psy11027 149 LAR-KNPKNYL---SLAPVFFKLMTTSSNNWMLIK 179 (252)
Q Consensus 149 ~~~-~n~~~~l---~l~~~l~~lL~~~~nN~~~i~ 179 (252)
.++ ++.+ ++ |..+.|-.+|.+.+...+..+
T Consensus 407 ~~~~~~~~-~l~~~g~i~~L~~LL~~~d~~i~~~~ 440 (529)
T 3tpo_A 407 GGTVEQIV-YLVHCGIIEPLMNLLSAKDTKIIQVI 440 (529)
T ss_dssp HSCHHHHH-HHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred CCCHHHHH-HHHHCcCHHHHHHHhcCCCHHHHHHH
Confidence 111 1111 11 344778888888776655543
No 42
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=97.03 E-value=0.028 Score=52.73 Aligned_cols=130 Identities=12% Similarity=0.096 Sum_probs=92.8
Q ss_pred HHHHHhcccCCHHHHHHHHHHhhcCCc--hHhHHH-----HHHHHHHhhcCCC-----hHHHHHHHHHHHHHHhhCCCCc
Q psy11027 5 NMIRKDLNAQNQYDAGLALSALACFTS--TDLARD-----LANDIMMLLTSTK-----PYLRKKAVLMMYKVFLKFPDAL 72 (252)
Q Consensus 5 N~i~kDL~s~n~~~~~LAL~~la~i~~--~el~~~-----l~~~V~~lL~s~~-----p~VRKkA~lal~ki~~~~Pd~l 72 (252)
..+.+=|.|+++.++--|+.+++|+.. ++..+. ..+.+.+++.+++ ..+++.|+.++..+.+......
T Consensus 146 p~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~ 225 (510)
T 3ul1_B 146 PAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAP 225 (510)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchh
Confidence 456677889999999999999999873 444333 3467788887643 3467778888877776433222
Q ss_pred -----CchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchh-----hhhhHHHHHHHhhcCCChhHHHHHhhc
Q psy11027 73 -----RPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKN-----YLSLAPVFFKLMTTSSNNWMLIKIIKL 135 (252)
Q Consensus 73 -----~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~-----~~~l~p~l~~lL~~~~~pwlqikiLkl 135 (252)
...++.+.++|.++++.|...|+..+..++...++. -...+|.++++|.+ +++-.|...++.
T Consensus 226 ~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~al~a 297 (510)
T 3ul1_B 226 PLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA-TELPIVTPALRA 297 (510)
T ss_dssp CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTC-SCHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcC-CChhhhhHHHHH
Confidence 235688999999999999999999999998765442 13478889988875 355566655554
No 43
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=96.98 E-value=0.0011 Score=65.79 Aligned_cols=112 Identities=15% Similarity=0.144 Sum_probs=88.2
Q ss_pred hcccCCHHHHHHHHHHhhcCCc---hHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCc---------CchhH
Q psy11027 10 DLNAQNQYDAGLALSALACFTS---TDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDAL---------RPAFP 77 (252)
Q Consensus 10 DL~s~n~~~~~LAL~~la~i~~---~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l---------~~~~~ 77 (252)
=+.++++.++..|-.+++.|.. ++-.+++.+.+.+.++++++.+|..|..++.++++..|+.+ ...++
T Consensus 98 ~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~ 177 (852)
T 4fdd_A 98 NIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIP 177 (852)
T ss_dssp TTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHH
Confidence 3678899999888888887764 34566789999999999999999999999999999988763 23468
Q ss_pred HHHhhhCCCChhHHHHHHHHHHHHHhhCchhhh----hhHHHHHHHhh
Q psy11027 78 RLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL----SLAPVFFKLMT 121 (252)
Q Consensus 78 ~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~----~l~p~l~~lL~ 121 (252)
.+.+.+.|+++.|..+|+..+..++...++.+. .++|.+++.+.
T Consensus 178 ~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~ 225 (852)
T 4fdd_A 178 KFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAG 225 (852)
T ss_dssp HHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcC
Confidence 888889999999999999999888766555332 34555555444
No 44
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=96.87 E-value=0.013 Score=55.10 Aligned_cols=166 Identities=10% Similarity=0.130 Sum_probs=109.8
Q ss_pred HHHHHhcccCCHHHHHHHHHHhhcCC--chHhHHH-----HHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcC----
Q psy11027 5 NMIRKDLNAQNQYDAGLALSALACFT--STDLARD-----LANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALR---- 73 (252)
Q Consensus 5 N~i~kDL~s~n~~~~~LAL~~la~i~--~~el~~~-----l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~---- 73 (252)
..+.+=+.++++.++.-|..+++++. ..+..+. +.+.+.+++.++++.++..|+.|+..+...+++...
T Consensus 235 p~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~ 314 (510)
T 3ul1_B 235 PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID 314 (510)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhh
Confidence 34566678899999999999998877 3343332 467888999999999999999999888766554322
Q ss_pred -chhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhh-----hhhHHHHHHHhhcCCChhHHHHHhhccccchhhhhhhh
Q psy11027 74 -PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY-----LSLAPVFFKLMTTSSNNWMLIKIIKLRLQGVFAVNVVC 147 (252)
Q Consensus 74 -~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~-----~~l~p~l~~lL~~~~~pwlqikiLklrL~~v~a~~v~~ 147 (252)
...+.+.++|.+++..+...|+..+..++..+++.. ..++|.++++|.+. ++-.|...... ..-++
T Consensus 315 ~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~a-------L~Nl~ 386 (510)
T 3ul1_B 315 AGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWA-------ITNYT 386 (510)
T ss_dssp TTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHH-------HHHHH
T ss_pred ccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHH-------HHHHH
Confidence 356788899999999999999999999987666532 24778888888753 33333322111 11111
Q ss_pred hhcc-cCccchh---chhhHHHHHhcCCCcchhHHH
Q psy11027 148 ELAR-KNPKNYL---SLAPVFFKLMTTSSNNWMLIK 179 (252)
Q Consensus 148 e~~~-~n~~~~l---~l~~~l~~lL~~~~nN~~~i~ 179 (252)
..++ ++.. ++ |..+.|..+|.+.+...+..+
T Consensus 387 ~~~~~~~~~-~L~~~g~i~~L~~LL~~~d~~i~~~~ 421 (510)
T 3ul1_B 387 SGGTVEQIV-YLVHCGIIEPLMNLLSAKDTKIIQVI 421 (510)
T ss_dssp HHCCHHHHH-HHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred ccCCHHHHH-HHHHCCCHHHHHHHhcCCCHHHHHHH
Confidence 1111 1111 11 344778888888877665544
No 45
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=96.82 E-value=0.0071 Score=53.46 Aligned_cols=95 Identities=15% Similarity=0.206 Sum_probs=78.8
Q ss_pred cCCHHHHHHHHHHhhcCC--chHhHH-----HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcC-----chhHHHH
Q psy11027 13 AQNQYDAGLALSALACFT--STDLAR-----DLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLK 80 (252)
Q Consensus 13 s~n~~~~~LAL~~la~i~--~~el~~-----~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~-----~~~~~l~ 80 (252)
++++.++.-|+.+++|+. .++-.+ ...+.+.+++.++++.+|++|+.|+..+...+|+... ..++.+.
T Consensus 136 ~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv 215 (296)
T 1xqr_A 136 DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLV 215 (296)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHH
Confidence 357899999999999984 444332 2567888999999999999999999999988887543 4679999
Q ss_pred hhhCCCChhHHHHHHHHHHHHHhhCch
Q psy11027 81 EKLEDPDSGVQSAAVNVVCELARKNPK 107 (252)
Q Consensus 81 ~lL~d~d~~V~~~al~ll~ei~~~~p~ 107 (252)
++|.++|+.|...|+..+..++...+.
T Consensus 216 ~LL~~~d~~v~~~al~aL~~l~~~~~~ 242 (296)
T 1xqr_A 216 ALVRTEHSPFHEHVLGALCSLVTDFPQ 242 (296)
T ss_dssp HHHTSCCSTHHHHHHHHHHHHHTTCHH
T ss_pred HHHcCCChhHHHHHHHHHHHHHhCChh
Confidence 999999999999999999999876543
No 46
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=96.81 E-value=0.0069 Score=54.59 Aligned_cols=93 Identities=19% Similarity=0.152 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHh---hcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCC-CC----cCchhHHHHhhhCCC
Q psy11027 15 NQYDAGLALSAL---ACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFP-DA----LRPAFPRLKEKLEDP 86 (252)
Q Consensus 15 n~~~~~LAL~~l---a~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~P-d~----l~~~~~~l~~lL~d~ 86 (252)
+..++-.|..++ +.....++.+.+.+.+.+.+.++++.+|+.|+.|+..+..... +. ++..++.+.+.|.|+
T Consensus 341 ~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~ 420 (462)
T 1ibr_B 341 DWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP 420 (462)
T ss_dssp CCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCS
T ss_pred cchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCC
Confidence 334454554444 4433467778899999999999999999999999999886443 32 345678999999999
Q ss_pred ChhHHHHHHHHHHHHHhhCch
Q psy11027 87 DSGVQSAAVNVVCELARKNPK 107 (252)
Q Consensus 87 d~~V~~~al~ll~ei~~~~p~ 107 (252)
++.|..+|+..+..++...++
T Consensus 421 ~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 421 SVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp CHHHHHHHHHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999876543
No 47
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=96.70 E-value=0.0056 Score=55.17 Aligned_cols=116 Identities=12% Similarity=0.128 Sum_probs=83.4
Q ss_pred HHHHhcccC--CHHHHHHHHHHhhcCCc-------hHhHHHHHHHHHHhhcCC--ChHHHHHHHHHHHHHHhhCCCCc--
Q psy11027 6 MIRKDLNAQ--NQYDAGLALSALACFTS-------TDLARDLANDIMMLLTST--KPYLRKKAVLMMYKVFLKFPDAL-- 72 (252)
Q Consensus 6 ~i~kDL~s~--n~~~~~LAL~~la~i~~-------~el~~~l~~~V~~lL~s~--~p~VRKkA~lal~ki~~~~Pd~l-- 72 (252)
.+..=++++ ++.++-.|+.+++.+.. ....+.+.+.+.+++.+. ++.||+.|+-|+..+.....+..
T Consensus 132 ~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~ 211 (462)
T 1ibr_B 132 QLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDK 211 (462)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTS
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344455677 89999999999887652 344567888889999987 79999999999988643222111
Q ss_pred ---Cc-hhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhhh-----hhHHHHHHHhh
Q psy11027 73 ---RP-AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL-----SLAPVFFKLMT 121 (252)
Q Consensus 73 ---~~-~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~-----~l~p~l~~lL~ 121 (252)
.. ..+.+.+.+.|.++.|..+++..+..++...|+.+. .++|.++..+.
T Consensus 212 ~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 269 (462)
T 1ibr_B 212 ESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK 269 (462)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 12 246677778899999999999999999998887543 44554444444
No 48
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=96.65 E-value=0.11 Score=49.74 Aligned_cols=120 Identities=12% Similarity=0.081 Sum_probs=86.9
Q ss_pred HHHHhccc-CCHHHHHHHHHHhhcCCc-hHhHH-----HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCc-----C
Q psy11027 6 MIRKDLNA-QNQYDAGLALSALACFTS-TDLAR-----DLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDAL-----R 73 (252)
Q Consensus 6 ~i~kDL~s-~n~~~~~LAL~~la~i~~-~el~~-----~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l-----~ 73 (252)
.+.+-|.+ .++.++..|..++.++.. ++... ...+.+.+++.++++.+|+.|+.++..+....++.. .
T Consensus 60 ~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~ 139 (644)
T 2z6h_A 60 AIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLA 139 (644)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHC
Confidence 34445554 478888888888887663 33222 256778888999999999999999999887765432 2
Q ss_pred chhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhh-----hhhHHHHHHHhhcCCC
Q psy11027 74 PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY-----LSLAPVFFKLMTTSSN 125 (252)
Q Consensus 74 ~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~-----~~l~p~l~~lL~~~~~ 125 (252)
..++.+.++|.++++.+...++.++..++..+++.- ...+|.++++|.+...
T Consensus 140 g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~ 196 (644)
T 2z6h_A 140 GGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY 196 (644)
T ss_dssp THHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCC
T ss_pred CChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCCh
Confidence 467899999998888888888888888886555421 2457888888876543
No 49
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=96.63 E-value=0.036 Score=54.08 Aligned_cols=117 Identities=12% Similarity=0.150 Sum_probs=84.8
Q ss_pred HHHHHhcccCCHHHHHHHHHHhhcCCc---hH----hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCC------CC
Q psy11027 5 NMIRKDLNAQNQYDAGLALSALACFTS---TD----LARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFP------DA 71 (252)
Q Consensus 5 N~i~kDL~s~n~~~~~LAL~~la~i~~---~e----l~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~P------d~ 71 (252)
+.+.+-++++++.++-.|+.+++++.. ++ ..+.+.+.+.+.+.++++.||..|+.++.++....+ +.
T Consensus 372 ~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 451 (861)
T 2bpt_A 372 EFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH 451 (861)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT
T ss_pred HHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH
Confidence 344555678899999999999988773 12 234567788888899999999999999999887643 23
Q ss_pred cCchhHHHHhhhCCCChhHHHHHHHHHHHHHhhC----ch----hhhhhHHHHHHHhhc
Q psy11027 72 LRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN----PK----NYLSLAPVFFKLMTT 122 (252)
Q Consensus 72 l~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~----p~----~~~~l~p~l~~lL~~ 122 (252)
+....+.+.+.|.|+ +.|..+|+..+..+++.- ++ .+..+.|.+++.+.+
T Consensus 452 ~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~ 509 (861)
T 2bpt_A 452 LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANR 509 (861)
T ss_dssp HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhC
Confidence 345567788888876 899999988888887642 23 234455666666654
No 50
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=96.60 E-value=0.015 Score=48.72 Aligned_cols=89 Identities=22% Similarity=0.257 Sum_probs=53.5
Q ss_pred chHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHH-hhCCCCcCchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhh
Q psy11027 31 STDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVF-LKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY 109 (252)
Q Consensus 31 ~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~-~~~Pd~l~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~ 109 (252)
.|++...++.++..+++|++ ..-|-+++-+..-. ...|..+.++.|++..+|.|+|--|.++|+-.+.+++..+|+ +
T Consensus 138 nP~l~~~v~rdi~smltskd-~~Dkl~aLnFi~alGen~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npk-l 215 (253)
T 2db0_A 138 NPMLMASIVRDFMSMLSSKN-REDKLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDK-L 215 (253)
T ss_dssp CHHHHHHHHHHHHHHTSCSS-HHHHHHHHHHHHTCCTTTHHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH-H
T ss_pred ChHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHhccCccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH-H
Confidence 56666777777777777555 34444444332211 223344556677777777777777777777777777777776 4
Q ss_pred hhhHHHHHHHhh
Q psy11027 110 LSLAPVFFKLMT 121 (252)
Q Consensus 110 ~~l~p~l~~lL~ 121 (252)
++.+-.-+.-+.
T Consensus 216 Rkii~~kl~e~~ 227 (253)
T 2db0_A 216 RKVVIKRLEELN 227 (253)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHHhc
Confidence 544444443333
No 51
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=96.57 E-value=0.018 Score=49.76 Aligned_cols=124 Identities=15% Similarity=0.169 Sum_probs=75.9
Q ss_pred HhcccCCHHHHHHHHHHhhc----CC-chHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhh
Q psy11027 9 KDLNAQNQYDAGLALSALAC----FT-STDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKL 83 (252)
Q Consensus 9 kDL~s~n~~~~~LAL~~la~----i~-~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL 83 (252)
+=+.+.|+-+.-=|++++.. .. +++--.-+...+..++.++++.++=-|+-.+.++ +--+..+...+.+.+++
T Consensus 82 ~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl--kv~~~~~~V~~~l~sLl 159 (265)
T 3b2a_A 82 NALSQENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL--QPLEDSKLVRTYINELV 159 (265)
T ss_dssp HTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC--CBSCCCHHHHHHHHHHH
T ss_pred HHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC--CcccchHHHHHHHHHHH
Confidence 33566677777677776643 22 3333444566666666667777777777777766 22233445566667777
Q ss_pred CCCChhHHHHHHHHHHHHHhhC--chhhhhhHHHHHHHhhcCCChhHHHHHhhc
Q psy11027 84 EDPDSGVQSAAVNVVCELARKN--PKNYLSLAPVFFKLMTTSSNNWMLIKIIKL 135 (252)
Q Consensus 84 ~d~d~~V~~~al~ll~ei~~~~--p~~~~~l~p~l~~lL~~~~~pwlqikiLkl 135 (252)
.++|++|-++|+.++.+++..+ |+.+..++..+-.+|++- ||+++-+.|..
T Consensus 160 ~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~e-D~~l~e~aLd~ 212 (265)
T 3b2a_A 160 VSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQND-NEFIVELALDV 212 (265)
T ss_dssp TCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCS-CHHHHHHHHHH
T ss_pred hCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 7777777777777777777644 445555555555555543 77777666655
No 52
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=96.54 E-value=0.018 Score=56.35 Aligned_cols=117 Identities=7% Similarity=0.070 Sum_probs=87.7
Q ss_pred hHHHHHhcccCCHHHHHHHHHHhhcCCc--------hHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCC----CC
Q psy11027 4 TNMIRKDLNAQNQYDAGLALSALACFTS--------TDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFP----DA 71 (252)
Q Consensus 4 ~N~i~kDL~s~n~~~~~LAL~~la~i~~--------~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~P----d~ 71 (252)
...+.+-+.++++.++..|+.+++.++. .+..+.+.+.+.+.+.+. +.||..|+.++..+.+..+ +.
T Consensus 413 l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~ 491 (861)
T 2bpt_A 413 LPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSP 491 (861)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCG
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchh
Confidence 3456777889999999999888876552 456778889999999876 9999999999999888653 44
Q ss_pred cCc----hhHHHHhhhCC--CChhHHHHHHHHHHHHHhhCchh----hhhhHHHHHHHhh
Q psy11027 72 LRP----AFPRLKEKLED--PDSGVQSAAVNVVCELARKNPKN----YLSLAPVFFKLMT 121 (252)
Q Consensus 72 l~~----~~~~l~~lL~d--~d~~V~~~al~ll~ei~~~~p~~----~~~l~p~l~~lL~ 121 (252)
+.. .++.+.+.+.+ .++.|..+++..+..++...++. +..+.|.+++.|.
T Consensus 492 l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~ 551 (861)
T 2bpt_A 492 IYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLG 551 (861)
T ss_dssp GGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHH
Confidence 433 34667777774 45889999999999998877653 3445666666554
No 53
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=96.39 E-value=0.0032 Score=62.61 Aligned_cols=124 Identities=11% Similarity=0.162 Sum_probs=88.6
Q ss_pred HHHHHhcccCCHHHHHHHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCC---Cc--CchhHHH
Q psy11027 5 NMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPD---AL--RPAFPRL 79 (252)
Q Consensus 5 N~i~kDL~s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd---~l--~~~~~~l 79 (252)
..+.++|.++++.++..|++.+......++.....+.+.+++.++++.+|++|+.++..+....+. .. ...++.+
T Consensus 118 ~~lv~~L~~~~~~~r~~a~~~l~~~~~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~L 197 (780)
T 2z6g_A 118 PTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAI 197 (780)
T ss_dssp --------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhcCccHHHHHHHHHHHHhhhHHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHH
Confidence 467788999999999999999987776788888899999999999999999999999998764332 11 1356778
Q ss_pred HhhhC-CCChhHHHHHHHHHHHHHhhCchh----h-hhhHHHHHHHhhcCCChhHHH
Q psy11027 80 KEKLE-DPDSGVQSAAVNVVCELARKNPKN----Y-LSLAPVFFKLMTTSSNNWMLI 130 (252)
Q Consensus 80 ~~lL~-d~d~~V~~~al~ll~ei~~~~p~~----~-~~l~p~l~~lL~~~~~pwlqi 130 (252)
.+.|. +.|+.+...|+..+..++.. ++. . ...+|.++++|.+. +|-.|.
T Consensus 198 v~~L~~~~d~~vr~~Aa~aL~~Ls~~-~~~~~~i~~~g~I~~Lv~lL~~~-~~~v~~ 252 (780)
T 2z6g_A 198 VRTMQNTNDVETARCTSGTLHNLSHH-REGLLAIFKSGGIPALVNMLGSP-VDSVLF 252 (780)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHTTCS-CHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHhCC-chhHHHHHHcCCHHHHHHHHcCC-CHHHHH
Confidence 88886 45999999999999988753 221 1 24778888888753 443333
No 54
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=96.29 E-value=0.36 Score=40.44 Aligned_cols=83 Identities=17% Similarity=0.261 Sum_probs=42.8
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhC-CCChhHHHHHHHHHHHHHhhCchhhhhhHH
Q psy11027 36 RDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLE-DPDSGVQSAAVNVVCELARKNPKNYLSLAP 114 (252)
Q Consensus 36 ~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~-d~d~~V~~~al~ll~ei~~~~p~~~~~l~p 114 (252)
+.+..++.++|.+.-..|+|.|.--+.-+.+.+||+..+...++.-++. |..--.....-..+-.+++.+|+..++.+|
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~~vVp 110 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIP 110 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHHhhHH
Confidence 3455555566655555566666666666666666665555555555553 222222222223333444445665556666
Q ss_pred HHHH
Q psy11027 115 VFFK 118 (252)
Q Consensus 115 ~l~~ 118 (252)
.++.
T Consensus 111 ~lfa 114 (253)
T 2db0_A 111 VLFA 114 (253)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 55
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=96.20 E-value=0.015 Score=53.66 Aligned_cols=118 Identities=13% Similarity=0.102 Sum_probs=89.8
Q ss_pred hHHHHHhcccCCHHHHHHHHHHhhcCCchHhH-------HHHHHHHHHhhcC-CChHHHHHHHHHHHHHHhhCCCCcC--
Q psy11027 4 TNMIRKDLNAQNQYDAGLALSALACFTSTDLA-------RDLANDIMMLLTS-TKPYLRKKAVLMMYKVFLKFPDALR-- 73 (252)
Q Consensus 4 ~N~i~kDL~s~n~~~~~LAL~~la~i~~~el~-------~~l~~~V~~lL~s-~~p~VRKkA~lal~ki~~~~Pd~l~-- 73 (252)
+..+.+=|+++++.++..|+.+++++...+-. +...+.+.+++.+ +++.+|+.|+-++.++.. .++...
T Consensus 19 i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~-~~~~~~~i 97 (529)
T 1jdh_A 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAI 97 (529)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHc-CchhHHHH
Confidence 44566777899999999999999988743222 2467778888865 489999999999988643 233111
Q ss_pred ---chhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchh---h--hhhHHHHHHHhhc
Q psy11027 74 ---PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKN---Y--LSLAPVFFKLMTT 122 (252)
Q Consensus 74 ---~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~---~--~~l~p~l~~lL~~ 122 (252)
..++.+.++|.++|+.+...|+..+..++..+++. + ...+|.++++|.+
T Consensus 98 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~ 154 (529)
T 1jdh_A 98 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 154 (529)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhc
Confidence 35789999999999999999999999999876542 1 3578888888875
No 56
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=96.01 E-value=0.17 Score=43.72 Aligned_cols=116 Identities=9% Similarity=0.061 Sum_probs=82.4
Q ss_pred hHHHHHhcccCCHHHHHHHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHH--HhhCCCCcCchhHHHHh
Q psy11027 4 TNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKV--FLKFPDALRPAFPRLKE 81 (252)
Q Consensus 4 ~N~i~kDL~s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki--~~~~Pd~l~~~~~~l~~ 81 (252)
.++++.=+.++|+...--|.-.++.+...+.++.+.+-+.+++.|.++++|-.|.-++.-+ +..+|+.+...+..+..
T Consensus 117 ~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~e 196 (265)
T 3b2a_A 117 AKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPS 196 (265)
T ss_dssp HHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHH
T ss_pred HHHHHHHhcCCCchHHHHHHHHhCcCCcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHH
Confidence 4555555667788887778778888877777778888888888777887777666666555 34556777777888888
Q ss_pred hhCCCChhHHHHHHHHHHHHHhhCchhhhhhHHHHHHHhh
Q psy11027 82 KLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMT 121 (252)
Q Consensus 82 lL~d~d~~V~~~al~ll~ei~~~~p~~~~~l~p~l~~lL~ 121 (252)
+|+..|+.+.--|+..+.++.... .-..+.+.+.++++
T Consensus 197 lL~~eD~~l~e~aLd~Le~ils~p--i~~~~~~~~~~~~~ 234 (265)
T 3b2a_A 197 LLQNDNEFIVELALDVLEKALSFP--LLENVKIELLKISR 234 (265)
T ss_dssp HHTCSCHHHHHHHHHHHHHHTTSC--CCSCCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCc--ccHhHHHHHHHHHH
Confidence 888888888888888888877542 12345566655544
No 57
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=95.94 E-value=0.12 Score=47.35 Aligned_cols=120 Identities=12% Similarity=0.085 Sum_probs=90.1
Q ss_pred HHHhccc-CCHHHHHHHHHHhhcCCc-hHhHH-----HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCc-----Cc
Q psy11027 7 IRKDLNA-QNQYDAGLALSALACFTS-TDLAR-----DLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDAL-----RP 74 (252)
Q Consensus 7 i~kDL~s-~n~~~~~LAL~~la~i~~-~el~~-----~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l-----~~ 74 (252)
+.+-|.+ +++.++-.|..++.++.. ++..+ ...+.+.+++.++++.+++.|+-++..+...+++.- ..
T Consensus 64 Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g 143 (529)
T 1jdh_A 64 IVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG 143 (529)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcC
Confidence 3344544 488999999999988773 33222 256788899999999999999999999988876532 24
Q ss_pred hhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhh-----hhhHHHHHHHhhcCCCh
Q psy11027 75 AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY-----LSLAPVFFKLMTTSSNN 126 (252)
Q Consensus 75 ~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~-----~~l~p~l~~lL~~~~~p 126 (252)
.++.+.++|.++++.+...+...+..++..+++.- ...+|.++++|.+..++
T Consensus 144 ~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~ 200 (529)
T 1jdh_A 144 GLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYE 200 (529)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCH
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChH
Confidence 67999999999999999998888888887655421 24577888888765443
No 58
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=95.93 E-value=0.037 Score=51.27 Aligned_cols=117 Identities=11% Similarity=0.100 Sum_probs=92.9
Q ss_pred chHHHHHhcccCCHHHHHHHHHHhhcCC--chH----hHH-HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCc---
Q psy11027 3 TTNMIRKDLNAQNQYDAGLALSALACFT--STD----LAR-DLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDAL--- 72 (252)
Q Consensus 3 ~~N~i~kDL~s~n~~~~~LAL~~la~i~--~~e----l~~-~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l--- 72 (252)
.+..+.+-|+++++.++.-|..++.++. .++ +.+ -..+.+.++|.++++.+++.|+-|+..+...+|+.-
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 4566778889999999999999998875 222 222 256889999999999999999999998887655532
Q ss_pred -C-chhHHHHhhhC-CCChhHHHHHHHHHHHHHhhCch----hhhhhHHHHHHHh
Q psy11027 73 -R-PAFPRLKEKLE-DPDSGVQSAAVNVVCELARKNPK----NYLSLAPVFFKLM 120 (252)
Q Consensus 73 -~-~~~~~l~~lL~-d~d~~V~~~al~ll~ei~~~~p~----~~~~l~p~l~~lL 120 (252)
. ..+|.+.++|. +.++.+.-.|+..+..++.. ++ .....+|.++++|
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll 136 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRV 136 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHH
Confidence 2 46899999998 78999999999999999976 33 2236788999998
No 59
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.68 E-value=0.039 Score=47.40 Aligned_cols=98 Identities=14% Similarity=0.229 Sum_probs=73.3
Q ss_pred HHhcccCCHHHHHHHHHHhhcCCchH-hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCC-CCcC------chhHHH
Q psy11027 8 RKDLNAQNQYDAGLALSALACFTSTD-LARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFP-DALR------PAFPRL 79 (252)
Q Consensus 8 ~kDL~s~n~~~~~LAL~~la~i~~~e-l~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~P-d~l~------~~~~~l 79 (252)
.|=+.++.+-++.-|+.++..+.... -...+...+...+.+.+|.+|--++..+.++++.+. ..+. .+.+.+
T Consensus 109 eK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l 188 (278)
T 4ffb_C 109 EKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHV 188 (278)
T ss_dssp HHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGH
T ss_pred HHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHH
Confidence 34477888888888877774433211 123456777888999999999999999999998754 3332 234677
Q ss_pred HhhhCCCChhHHHHHHHHHHHHHhhC
Q psy11027 80 KEKLEDPDSGVQSAAVNVVCELARKN 105 (252)
Q Consensus 80 ~~lL~d~d~~V~~~al~ll~ei~~~~ 105 (252)
.++|+|+|+.|..+|..++.++.+.-
T Consensus 189 ~k~l~d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 189 PQLAGHGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred HHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999997643
No 60
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=95.68 E-value=0.048 Score=52.42 Aligned_cols=119 Identities=13% Similarity=0.122 Sum_probs=89.3
Q ss_pred hHHHHHhcccCCHHHHHHHHHHhhcCCchHhH-------HHHHHHHHHhhcCC-ChHHHHHHHHHHHHHHhhCCCCc---
Q psy11027 4 TNMIRKDLNAQNQYDAGLALSALACFTSTDLA-------RDLANDIMMLLTST-KPYLRKKAVLMMYKVFLKFPDAL--- 72 (252)
Q Consensus 4 ~N~i~kDL~s~n~~~~~LAL~~la~i~~~el~-------~~l~~~V~~lL~s~-~p~VRKkA~lal~ki~~~~Pd~l--- 72 (252)
+..+.+=|+++++.++..|+.++++++..+-. +...+.+.+.|.++ ++.+|+.|+-++..+-. .++..
T Consensus 16 i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~-~~~~~~~i 94 (644)
T 2z6h_A 16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAI 94 (644)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT-SHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-ChhhHHHH
Confidence 44566677889999999999999888743211 24677888888765 89999999888875443 33311
Q ss_pred -C-chhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhh-----hhhHHHHHHHhhcC
Q psy11027 73 -R-PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY-----LSLAPVFFKLMTTS 123 (252)
Q Consensus 73 -~-~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~-----~~l~p~l~~lL~~~ 123 (252)
. ..++.+.++|.++++.+...|+..+..++...++.. ...+|.++++|.+.
T Consensus 95 ~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~ 152 (644)
T 2z6h_A 95 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 152 (644)
T ss_dssp HTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC
T ss_pred HHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcC
Confidence 1 357899999999999999999999999998754321 35788899888753
No 61
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=95.56 E-value=0.064 Score=46.82 Aligned_cols=95 Identities=12% Similarity=0.069 Sum_probs=71.6
Q ss_pred cccCCHHHHHHHHHHh---hcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchh---HHHHhhhC
Q psy11027 11 LNAQNQYDAGLALSAL---ACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAF---PRLKEKLE 84 (252)
Q Consensus 11 L~s~n~~~~~LAL~~l---a~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~---~~l~~lL~ 84 (252)
+.++++-++..+-..+ ..+.++. .+.+.+.+.+.|.++..|--++..+..++..+.-.-...+ +.+.++++
T Consensus 141 lGd~k~~vR~~~r~il~~l~~v~~~~---~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~~~~l~~~~~ia~ll~ 217 (266)
T 2of3_A 141 TGEAKDNMRTSVRDIVNVLSDVVGPL---KMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPFVG 217 (266)
T ss_dssp GGCSSHHHHHHHHHHHHHHHHHHCHH---HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGGGGGGCHHHHHGGGGG
T ss_pred hCCChHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHc
Confidence 4666777776665444 3332222 3666677788999999999999999999888754433467 89999999
Q ss_pred CCChhHHHHHHHHHHHHHhhCchh
Q psy11027 85 DPDSGVQSAAVNVVCELARKNPKN 108 (252)
Q Consensus 85 d~d~~V~~~al~ll~ei~~~~p~~ 108 (252)
|+|.+|..+|++++.++.+.-.+.
T Consensus 218 D~d~~VR~aAl~~lve~y~~~Gd~ 241 (266)
T 2of3_A 218 DKDVNVRNAAINVLVACFKFEGDQ 241 (266)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred CCCHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999998766553
No 62
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=95.48 E-value=0.049 Score=53.25 Aligned_cols=106 Identities=10% Similarity=0.083 Sum_probs=78.9
Q ss_pred HHHHHhcccC--CHHHHHHHHHHhhcCCc-------hHhHHHHHHHHHHhhcCC--ChHHHHHHHHHHHHHHhhCCCCcC
Q psy11027 5 NMIRKDLNAQ--NQYDAGLALSALACFTS-------TDLARDLANDIMMLLTST--KPYLRKKAVLMMYKVFLKFPDALR 73 (252)
Q Consensus 5 N~i~kDL~s~--n~~~~~LAL~~la~i~~-------~el~~~l~~~V~~lL~s~--~p~VRKkA~lal~ki~~~~Pd~l~ 73 (252)
..+.+-+.++ ++.++-.|+.+++.+.. .+..+.+.+.+.+.+.++ ++.+|+.|+-|+..+....++...
T Consensus 131 ~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~ 210 (876)
T 1qgr_A 131 PQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFD 210 (876)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHT
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556677 89999999999987653 234556777788888876 789999999999887654332221
Q ss_pred ------chhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhhh
Q psy11027 74 ------PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL 110 (252)
Q Consensus 74 ------~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~ 110 (252)
.+++.+.+.+.|.+..|...++.++..++...|+.+.
T Consensus 211 ~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 253 (876)
T 1qgr_A 211 KESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYME 253 (876)
T ss_dssp SHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCH
T ss_pred hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHH
Confidence 2456777788889999999999999999998887544
No 63
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=95.35 E-value=0.071 Score=52.01 Aligned_cols=116 Identities=17% Similarity=0.236 Sum_probs=90.0
Q ss_pred hHHHHHhcccCCHHHHHHHHHHhhcCCch---------------H----hHH------HHHHHHHHhhcCCChHHHHHHH
Q psy11027 4 TNMIRKDLNAQNQYDAGLALSALACFTST---------------D----LAR------DLANDIMMLLTSTKPYLRKKAV 58 (252)
Q Consensus 4 ~N~i~kDL~s~n~~~~~LAL~~la~i~~~---------------e----l~~------~l~~~V~~lL~s~~p~VRKkA~ 58 (252)
++.+++|- .+...+..+|.++.++-++ | .++ +-.+-+..++.+.+.|+|--|+
T Consensus 66 i~~L~~d~--~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~al 143 (651)
T 3grl_A 66 IHVLQTDR--SDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGV 143 (651)
T ss_dssp HHHHHSCT--TCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHhccc--ccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHH
Confidence 67888884 5667777788888653221 1 111 2345667888899999999999
Q ss_pred HHHHHHHhhCCCCc-------CchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCch-----hhhhhHHHHHHHhh
Q psy11027 59 LMMYKVFLKFPDAL-------RPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK-----NYLSLAPVFFKLMT 121 (252)
Q Consensus 59 lal~ki~~~~Pd~l-------~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~-----~~~~l~p~l~~lL~ 121 (252)
-++..+....|+.. +..++++..+|+|+.--+..-|+.++.++.+.+++ .|....+.+++++.
T Consensus 144 qlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~ 218 (651)
T 3grl_A 144 KLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT 218 (651)
T ss_dssp HHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence 99999999998833 24689999999999999999999999999999986 35666777877765
No 64
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=95.03 E-value=0.071 Score=52.85 Aligned_cols=115 Identities=17% Similarity=0.166 Sum_probs=75.5
Q ss_pred HHHHHHHHHHhhcCCc-hHhHHH-----HHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCC---cC--chhHHHHhhhC
Q psy11027 16 QYDAGLALSALACFTS-TDLARD-----LANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDA---LR--PAFPRLKEKLE 84 (252)
Q Consensus 16 ~~~~~LAL~~la~i~~-~el~~~-----l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~---l~--~~~~~l~~lL~ 84 (252)
+.++..|+.+++++.. ++.... ..+.+.+++.++++.+|+.|+.++..+.. +++. +. ...+.+.+++.
T Consensus 566 ~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~-~~~~~~~i~~~g~i~~L~~Ll~ 644 (780)
T 2z6g_A 566 EEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLH 644 (780)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTCHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc-CHHHHHHHHHCCCHHHHHHHHc
Confidence 4566677777777663 332222 35788999999999999999999888763 3332 22 35788999999
Q ss_pred CCChhHHHHHHHHHHHHHhhCchhhhhh--HHHHHHHhhcCCChhHHHH
Q psy11027 85 DPDSGVQSAAVNVVCELARKNPKNYLSL--APVFFKLMTTSSNNWMLIK 131 (252)
Q Consensus 85 d~d~~V~~~al~ll~ei~~~~p~~~~~l--~p~l~~lL~~~~~pwlqik 131 (252)
|+|+.|...|...+..++.+.|..|+.. ...+.+++..-...|...+
T Consensus 645 ~~~~~Vr~~A~~aL~~l~~~~~~~~~~~l~~~ll~~l~~~~~~~w~~~~ 693 (780)
T 2z6g_A 645 SRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMTWNETG 693 (780)
T ss_dssp CSCHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHC------------
T ss_pred CCCHHHHHHHHHHHHHHHcCChHhhhccccHHHHHHHHhCCCcccccCc
Confidence 9999999999999999999888777652 2233345555556898543
No 65
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=95.03 E-value=0.055 Score=50.69 Aligned_cols=91 Identities=15% Similarity=0.197 Sum_probs=70.1
Q ss_pred HHHHHHhhcC--CchHhHHH-----HHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcC-----chhHHHHhhhCCCC
Q psy11027 20 GLALSALACF--TSTDLARD-----LANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPD 87 (252)
Q Consensus 20 ~LAL~~la~i--~~~el~~~-----l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~-----~~~~~l~~lL~d~d 87 (252)
+-||+.++.+ ++++-.+. ..+.+.++|.++++.+++.|+-|+..+-..+|+... ..++.|.++|.+++
T Consensus 355 ~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~ 434 (458)
T 3nmz_A 355 GGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKH 434 (458)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSS
T ss_pred HHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCC
Confidence 3445555542 45554443 467889999999999999999999988766666432 35799999999999
Q ss_pred hhHHHHHHHHHHHHHhhCchhhh
Q psy11027 88 SGVQSAAVNVVCELARKNPKNYL 110 (252)
Q Consensus 88 ~~V~~~al~ll~ei~~~~p~~~~ 110 (252)
..+.-.|...+..++..+|..|+
T Consensus 435 ~~v~~~Aa~AL~nL~~~~p~ky~ 457 (458)
T 3nmz_A 435 KMIAMGSAAALRNLMANRPAKYK 457 (458)
T ss_dssp HHHHHHHHHHHHHHHTCCSCC--
T ss_pred HHHHHHHHHHHHHHHcCCHhhhc
Confidence 99999999999999999998886
No 66
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=94.96 E-value=0.046 Score=55.14 Aligned_cols=91 Identities=18% Similarity=0.161 Sum_probs=66.5
Q ss_pred cCCHHHHHHHHHHhhcCCc---------h------HhHHHHHHHHHHhhcCC---ChHHHHHHHHHHHHHHhhCC-CCcC
Q psy11027 13 AQNQYDAGLALSALACFTS---------T------DLARDLANDIMMLLTST---KPYLRKKAVLMMYKVFLKFP-DALR 73 (252)
Q Consensus 13 s~n~~~~~LAL~~la~i~~---------~------el~~~l~~~V~~lL~s~---~p~VRKkA~lal~ki~~~~P-d~l~ 73 (252)
++|...+=.|+.+++.+.. . ++.+.+...|...+.++ +|+||.+|+.++.++-...+ +.+.
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~ 495 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLI 495 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHH
Confidence 4566666677776665521 1 55565666777777777 99999999999998765533 3444
Q ss_pred chhHHHHhhhCCCChhHHHHHHHHHHHHHh
Q psy11027 74 PAFPRLKEKLEDPDSGVQSAAVNVVCELAR 103 (252)
Q Consensus 74 ~~~~~l~~lL~d~d~~V~~~al~ll~ei~~ 103 (252)
..++.+.+.|.|+++.|..+|...+..++.
T Consensus 496 ~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 496 ELMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 556777788889999999999999999886
No 67
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=94.68 E-value=0.13 Score=47.46 Aligned_cols=91 Identities=15% Similarity=0.131 Sum_probs=72.3
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCc-----CchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhh----
Q psy11027 39 ANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDAL-----RPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY---- 109 (252)
Q Consensus 39 ~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l-----~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~---- 109 (252)
.+.+.++|.++++.++..|+.++.++-..+++.- ...+|.+.++|.++++.+.-.|+..+..++..+++.-
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~ 83 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4667889999999999999999999876666522 1468999999999999999999999999998766532
Q ss_pred -hhhHHHHHHHhhcCCChhHH
Q psy11027 110 -LSLAPVFFKLMTTSSNNWML 129 (252)
Q Consensus 110 -~~l~p~l~~lL~~~~~pwlq 129 (252)
...+|.++++|..++++=.|
T Consensus 84 ~~G~i~~Lv~lL~~~~~~~~~ 104 (457)
T 1xm9_A 84 RQNGIREAVSLLRRTGNAEIQ 104 (457)
T ss_dssp HTTCHHHHHHHHTTCCCHHHH
T ss_pred HcCCHHHHHHHHhhCCCHHHH
Confidence 24689999999855555433
No 68
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=94.53 E-value=0.093 Score=47.33 Aligned_cols=92 Identities=15% Similarity=0.196 Sum_probs=70.6
Q ss_pred HHHHHHhhcC--CchHhHHH-----HHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcC-----chhHHHHhhhCCCC
Q psy11027 20 GLALSALACF--TSTDLARD-----LANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPD 87 (252)
Q Consensus 20 ~LAL~~la~i--~~~el~~~-----l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~-----~~~~~l~~lL~d~d 87 (252)
+-+|+.++++ ++++-.+. ..+.+.++|.++++.+++.|+-|+..+-..+|+... ..++.|.++|.+++
T Consensus 239 ~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~ 318 (354)
T 3nmw_A 239 GGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKH 318 (354)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSS
T ss_pred HHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCC
Confidence 3445555542 34554432 568899999999999999999999888755665332 35799999999999
Q ss_pred hhHHHHHHHHHHHHHhhCchhhhh
Q psy11027 88 SGVQSAAVNVVCELARKNPKNYLS 111 (252)
Q Consensus 88 ~~V~~~al~ll~ei~~~~p~~~~~ 111 (252)
..+...|...+..++..+|+.|+.
T Consensus 319 ~~i~~~A~~aL~nL~~~~~~~~~~ 342 (354)
T 3nmw_A 319 KMIAMGSAAALRNLMANRPAKYKD 342 (354)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGC-
T ss_pred HHHHHHHHHHHHHHHcCCHHHHhh
Confidence 999999999999999999987764
No 69
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=94.53 E-value=0.31 Score=42.20 Aligned_cols=84 Identities=14% Similarity=0.147 Sum_probs=70.1
Q ss_pred HHHHHHHHhhc---CCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhCCCChhHHHHH
Q psy11027 18 DAGLALSALAC---FTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAA 94 (252)
Q Consensus 18 ~~~LAL~~la~---i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~d~d~~V~~~a 94 (252)
.+.-.|+.+-. -..|++.+.+.+.+..+-.+++..+||-.+-=+...+++.|+.+....+.+..+|+|.|+.|+-.+
T Consensus 31 ~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d~d~~V~K~~ 110 (257)
T 3gs3_A 31 TKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSAQVIKRV 110 (257)
T ss_dssp HHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 55555555543 236889999999999998889999999999999999999999999999999999999999999888
Q ss_pred HHHHHHH
Q psy11027 95 VNVVCEL 101 (252)
Q Consensus 95 l~ll~ei 101 (252)
+.....+
T Consensus 111 I~~~~~i 117 (257)
T 3gs3_A 111 IQACGSI 117 (257)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7655444
No 70
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=94.42 E-value=0.22 Score=49.96 Aligned_cols=130 Identities=14% Similarity=0.082 Sum_probs=94.8
Q ss_pred HHHHHhcccCCHHHHHHHHHHhhcCCchHhHHH-----HHHHHHHhhcCCChHHHHHHHHHHHHHHhh---CCC--Cc--
Q psy11027 5 NMIRKDLNAQNQYDAGLALSALACFTSTDLARD-----LANDIMMLLTSTKPYLRKKAVLMMYKVFLK---FPD--AL-- 72 (252)
Q Consensus 5 N~i~kDL~s~n~~~~~LAL~~la~i~~~el~~~-----l~~~V~~lL~s~~p~VRKkA~lal~ki~~~---~Pd--~l-- 72 (252)
..+.+=++|+++.++.-|+.+++++++.+-.++ -.+.+.+++.++++.+|-.|+.++.|+-.. +|. .+
T Consensus 293 ~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~ 372 (810)
T 3now_A 293 QMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGD 372 (810)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTT
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhh
Confidence 455566788999999999999988886544442 237788888888899999999999998632 222 22
Q ss_pred ---CchhHHHHhhhCCC--ChhHHHHHHHHHHHHHhhCch--hh---hhhHHHHHHHhhcCCChhHHHHHhhc
Q psy11027 73 ---RPAFPRLKEKLEDP--DSGVQSAAVNVVCELARKNPK--NY---LSLAPVFFKLMTTSSNNWMLIKIIKL 135 (252)
Q Consensus 73 ---~~~~~~l~~lL~d~--d~~V~~~al~ll~ei~~~~p~--~~---~~l~p~l~~lL~~~~~pwlqikiLkl 135 (252)
+...+.+.++|.++ |+.+...|+-.+.+++...+. .+ ...+|.++++|++ .++=.|...+..
T Consensus 373 g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s-~d~~i~~~al~~ 444 (810)
T 3now_A 373 GAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARG-GNQSCLYGVVTT 444 (810)
T ss_dssp THHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHT-TCGGGHHHHHHH
T ss_pred ccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCC-CChHHHHHHHHH
Confidence 12357889999887 999999999999999864321 12 3578999999975 465555554443
No 71
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=94.40 E-value=0.55 Score=40.05 Aligned_cols=99 Identities=15% Similarity=0.120 Sum_probs=74.4
Q ss_pred HHHHHhcccCCHHHHHHHHHHhhcCC--------c----hHhHHHHHHHHH-HhhcCCChHHHHHHHHHHHHHHhhCCCC
Q psy11027 5 NMIRKDLNAQNQYDAGLALSALACFT--------S----TDLARDLANDIM-MLLTSTKPYLRKKAVLMMYKVFLKFPDA 71 (252)
Q Consensus 5 N~i~kDL~s~n~~~~~LAL~~la~i~--------~----~el~~~l~~~V~-~lL~s~~p~VRKkA~lal~ki~~~~Pd~ 71 (252)
..++|-+.++|..++..|+.++..+. . ...+..+.+.+. +++.++++.+|..|.-|+..++.....
T Consensus 58 ~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~- 136 (278)
T 4ffb_C 58 TLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS- 136 (278)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS-
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc-
Confidence 35778888999999999988885431 1 123344555555 578999999999999999888754421
Q ss_pred cCchhHHHHhhhCCCChhHHHHHHHHHHHHHhh
Q psy11027 72 LRPAFPRLKEKLEDPDSGVQSAAVNVVCELARK 104 (252)
Q Consensus 72 l~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~ 104 (252)
.....+.+...+.+++|.|...++..+..+.+.
T Consensus 137 ~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~ 169 (278)
T 4ffb_C 137 ITQSVELVIPFFEKKLPKLIAAAANCVYELMAA 169 (278)
T ss_dssp SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 223457788888999999999999999998865
No 72
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=94.34 E-value=0.16 Score=43.27 Aligned_cols=103 Identities=13% Similarity=0.129 Sum_probs=77.3
Q ss_pred cchHHHHHhcccCCH--HHHHHHHHHhhcCCc--hH----hHHH-HHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCC-
Q psy11027 2 LTTNMIRKDLNAQNQ--YDAGLALSALACFTS--TD----LARD-LANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDA- 71 (252)
Q Consensus 2 L~~N~i~kDL~s~n~--~~~~LAL~~la~i~~--~e----l~~~-l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~- 71 (252)
|.+-.+.+-|+|+++ .++..|..++.++.. ++ +++. ..+.+.++|.++++.+++.|+-|+..+-..+++-
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 345567788888887 777777778877652 22 2221 4688999999999999999999998887655542
Q ss_pred --cC--chhHHHHhhhC-CCChhHHHHHHHHHHHHHhh
Q psy11027 72 --LR--PAFPRLKEKLE-DPDSGVQSAAVNVVCELARK 104 (252)
Q Consensus 72 --l~--~~~~~l~~lL~-d~d~~V~~~al~ll~ei~~~ 104 (252)
+. ..+|.+.++|. .++..+.-.|+..+..++..
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~ 125 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN 125 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC
Confidence 22 46789999997 57889999999899888753
No 73
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=94.32 E-value=0.25 Score=49.81 Aligned_cols=63 Identities=16% Similarity=0.130 Sum_probs=53.7
Q ss_pred hHHHHHhcccC---CHHHHHHHHHHhhcCCc---hHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHh
Q psy11027 4 TNMIRKDLNAQ---NQYDAGLALSALACFTS---TDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFL 66 (252)
Q Consensus 4 ~N~i~kDL~s~---n~~~~~LAL~~la~i~~---~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~ 66 (252)
++.+..+++++ +|.+++-|+.+++.+++ ++..+.+.+.+.+.|.++++.||-.|+.|+.++..
T Consensus 457 ~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 457 TKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp HHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 34566677777 99999999999988764 57788888899999999999999999999999886
No 74
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=94.22 E-value=0.16 Score=43.19 Aligned_cols=92 Identities=13% Similarity=0.141 Sum_probs=72.0
Q ss_pred HHHHHHhhcCCCh--HHHHHHHHHHHHHHhhCCCC---c-C-chhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhh--
Q psy11027 39 ANDIMMLLTSTKP--YLRKKAVLMMYKVFLKFPDA---L-R-PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY-- 109 (252)
Q Consensus 39 ~~~V~~lL~s~~p--~VRKkA~lal~ki~~~~Pd~---l-~-~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~-- 109 (252)
.+.+.++|.++++ .++..|+-++..+-..+++. + . ..+|.+.++|.++++.+.-.|+..+..++..+++.-
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~ 89 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE 89 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 5677889999887 88888988888877666542 2 2 468999999999999999999999999998766532
Q ss_pred ---hhhHHHHHHHhhcCCChhHHH
Q psy11027 110 ---LSLAPVFFKLMTTSSNNWMLI 130 (252)
Q Consensus 110 ---~~l~p~l~~lL~~~~~pwlqi 130 (252)
..-+|.++++|.+++++-.|.
T Consensus 90 I~~~GaI~~Lv~lL~~~~~~~~~e 113 (233)
T 3tt9_A 90 VAELNGVPRLLQVLKQTRDLETKK 113 (233)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHH
T ss_pred HHHcCCHHHHHHHHccCCCHHHHH
Confidence 246899999998655554554
No 75
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.06 E-value=0.13 Score=52.38 Aligned_cols=90 Identities=17% Similarity=0.072 Sum_probs=62.4
Q ss_pred ccCCHHHHHHHHHHhhcC--CchHhHHHHHHHHHH-hhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhCCCCh
Q psy11027 12 NAQNQYDAGLALSALACF--TSTDLARDLANDIMM-LLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDS 88 (252)
Q Consensus 12 ~s~n~~~~~LAL~~la~i--~~~el~~~l~~~V~~-lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~d~d~ 88 (252)
++++..++..|.-++|-| +.+|++.. +.+ ++.+.+|+||+-|++|+..+.--+|. +..++.|.+++.|+|.
T Consensus 588 ~d~~d~VRraAViaLGlI~~g~~e~v~r----lv~~L~~~~d~~VR~gAalALGli~aGn~~--~~aid~L~~L~~D~d~ 661 (963)
T 4ady_A 588 SDSNDDVRRAAVIALGFVLLRDYTTVPR----IVQLLSKSHNAHVRCGTAFALGIACAGKGL--QSAIDVLDPLTKDPVD 661 (963)
T ss_dssp HCSCHHHHHHHHHHHHHHTSSSCSSHHH----HTTTGGGCSCHHHHHHHHHHHHHHTSSSCC--HHHHHHHHHHHTCSSH
T ss_pred cCCcHHHHHHHHHHHHhhccCCHHHHHH----HHHHHHhcCCHHHHHHHHHHHHHhccCCCc--HHHHHHHHHHccCCCH
Confidence 356677777787777763 45655443 333 34467888888888888877655553 3456777788888888
Q ss_pred hHHHHHHHHHHHHHhhCch
Q psy11027 89 GVQSAAVNVVCELARKNPK 107 (252)
Q Consensus 89 ~V~~~al~ll~ei~~~~p~ 107 (252)
.|..+|+..+-.+.....+
T Consensus 662 ~Vrq~Ai~ALG~Ig~gtnn 680 (963)
T 4ady_A 662 FVRQAAMIALSMILIQQTE 680 (963)
T ss_dssp HHHHHHHHHHHHHSTTCCT
T ss_pred HHHHHHHHHHHHHhcCCcc
Confidence 8888888888777655443
No 76
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=93.91 E-value=0.21 Score=50.05 Aligned_cols=105 Identities=17% Similarity=0.260 Sum_probs=60.1
Q ss_pred HHHHHHHHHhhcCC---chHhHHH-HHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcC------chhHHHHhhhCCC
Q psy11027 17 YDAGLALSALACFT---STDLARD-LANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALR------PAFPRLKEKLEDP 86 (252)
Q Consensus 17 ~~~~LAL~~la~i~---~~el~~~-l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~------~~~~~l~~lL~d~ 86 (252)
+..+.||+-++... ...+.+. ..+.+.+++.|+++.||+.|+-|+..+.. +|+... ...+.+.+++.+.
T Consensus 599 ~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~-~~~~~~~~v~~~g~l~~Lv~LL~s~ 677 (810)
T 3now_A 599 FESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM-SEDVIKMFEGNNDRVKFLALLCEDE 677 (810)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTT-SHHHHHHHHSSSSHHHHHHHGGGCS
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC-ChHHHHHHHhccCcHHHHHHHhcCC
Confidence 34566666666654 2234432 55666677777777777777766665543 222211 2345666666666
Q ss_pred ChhHHHHHHHHHHHHHhhCchh----h--hhhHHHHHHHhhc
Q psy11027 87 DSGVQSAAVNVVCELARKNPKN----Y--LSLAPVFFKLMTT 122 (252)
Q Consensus 87 d~~V~~~al~ll~ei~~~~p~~----~--~~l~p~l~~lL~~ 122 (252)
+..+...|...+..++..+++. . ...+|.++++|.+
T Consensus 678 d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s 719 (810)
T 3now_A 678 DEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIAN 719 (810)
T ss_dssp SHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCC
Confidence 7777776666666666544331 1 2456666666654
No 77
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=93.38 E-value=0.21 Score=50.81 Aligned_cols=103 Identities=14% Similarity=0.193 Sum_probs=68.1
Q ss_pred HHHHhcc--cCCHHHHHHHHHHhhcCCc---hHh----HHHHHHHHHHhhc-----CCChHHHHHHHHHHHH---HHhhC
Q psy11027 6 MIRKDLN--AQNQYDAGLALSALACFTS---TDL----ARDLANDIMMLLT-----STKPYLRKKAVLMMYK---VFLKF 68 (252)
Q Consensus 6 ~i~kDL~--s~n~~~~~LAL~~la~i~~---~el----~~~l~~~V~~lL~-----s~~p~VRKkA~lal~k---i~~~~ 68 (252)
.+.+-++ +.+...+-.|+-++++++. .+. ...+.+.+..+.. +++|.+|..++-++.| .++.+
T Consensus 455 ~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~ 534 (1049)
T 3m1i_C 455 KLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH 534 (1049)
T ss_dssp HHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhH
Confidence 3444443 3566677777888877753 332 2334444444332 1456666667777764 45677
Q ss_pred CCCcCchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchh
Q psy11027 69 PDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKN 108 (252)
Q Consensus 69 Pd~l~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~ 108 (252)
|+.++...+.+.+.|.|++++|...|...+..++++.++.
T Consensus 535 ~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~ 574 (1049)
T 3m1i_C 535 WNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYH 574 (1049)
T ss_dssp HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777888888899999999999999999999865543
No 78
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=93.10 E-value=0.14 Score=48.36 Aligned_cols=90 Identities=17% Similarity=0.151 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHhhcCC--chHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhCCCChhHHH
Q psy11027 15 NQYDAGLALSALACFT--STDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQS 92 (252)
Q Consensus 15 n~~~~~LAL~~la~i~--~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~d~d~~V~~ 92 (252)
++-..-||=++|+..- -|++.+.-++....++.+.+..||+-|+-.+..+.+. +.+....+-|.++|...++..+.
T Consensus 41 ~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~kiaDvL~QlLqtdd~~E~~ 118 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLPRVADILTQLLQTDDSAEFN 118 (507)
T ss_dssp CHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHHHHHHHHHHHTTCCCHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhhhHHHHHHHHHhccchHHHH
Confidence 3444444444444433 3444444444444444444444444444444444433 33333334444444444444444
Q ss_pred HHHHHHHHHHhhCc
Q psy11027 93 AAVNVVCELARKNP 106 (252)
Q Consensus 93 ~al~ll~ei~~~~p 106 (252)
..=+.+.++.+.+|
T Consensus 119 ~V~~sL~sllk~Dp 132 (507)
T 3u0r_A 119 LVNNALLSIFKMDA 132 (507)
T ss_dssp HHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhcCh
Confidence 44444444444444
No 79
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=92.80 E-value=1.1 Score=45.82 Aligned_cols=183 Identities=11% Similarity=0.111 Sum_probs=111.6
Q ss_pred cccCCHHHHHHHH---HHhhcCCchHhHHHHHHHHHHhhcCC-ChHHHHHHHHHHHHHHhhCCCCcC----chhHHHHhh
Q psy11027 11 LNAQNQYDAGLAL---SALACFTSTDLARDLANDIMMLLTST-KPYLRKKAVLMMYKVFLKFPDALR----PAFPRLKEK 82 (252)
Q Consensus 11 L~s~n~~~~~LAL---~~la~i~~~el~~~l~~~V~~lL~s~-~p~VRKkA~lal~ki~~~~Pd~l~----~~~~~l~~l 82 (252)
+.+.+..++..|- .++....+++-...+.+.+.+.|.++ +...|--|.-++-++....|+.+. +.+|.+.+.
T Consensus 104 ~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 183 (986)
T 2iw3_A 104 AGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSET 183 (986)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhh
Confidence 4555666666554 44444556666677888888888665 567777777777777777787654 456778888
Q ss_pred hCCCChhHHHHHHHHHHHHHhhC-chhhhhhHHHHHHHhhcCCChhHHHHHhhccccchhhhhhhhhhcccCccchhchh
Q psy11027 83 LEDPDSGVQSAAVNVVCELARKN-PKNYLSLAPVFFKLMTTSSNNWMLIKIIKLRLQGVFAVNVVCELARKNPKNYLSLA 161 (252)
Q Consensus 83 L~d~d~~V~~~al~ll~ei~~~~-p~~~~~l~p~l~~lL~~~~~pwlqikiLklrL~~v~a~~v~~e~~~~n~~~~l~l~ 161 (252)
+-|..+-|-.+|...+..+|.-- -+...+++|.+++-+.+- .. .-+.++. |+ ...|...- ..|-=. -+.
T Consensus 184 ~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p-~~--~~~~~~~-l~----~~tfv~~v-~~~~l~-~~~ 253 (986)
T 2iw3_A 184 MWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADP-TE--VPETVHL-LG----ATTFVAEV-TPATLS-IMV 253 (986)
T ss_dssp TTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCT-TH--HHHHHHH-HT----TCCCCSCC-CHHHHH-HHH
T ss_pred cccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcCh-hh--hHHHHHH-hh----cCeeEeee-cchhHH-HHH
Confidence 88888899888888888888632 234567788888776531 11 1111111 00 00000000 001101 134
Q ss_pred hHHHHHhcCCCcchhHHHHHHHhhHHHHHHHHHHHHHHHhhccChhH--HHHHHHhh
Q psy11027 162 PVFFKLMTTSSNNWMLIKIIKLVLYAVLYAAAWICGEFREHLDSPRA--TLEAMTRR 216 (252)
Q Consensus 162 ~~l~~lL~~~~nN~~~i~likl~~~e~l~~~~~iv~~~~~~l~~~~~--~~~~~l~~ 216 (252)
|.|.+=|..+++... + .++.||++||.++.+|.+ .|-..|-|
T Consensus 254 p~l~r~l~~~~~~~~------------r-~~~~~~~n~~~lv~~~~~~~~f~~~l~p 297 (986)
T 2iw3_A 254 PLLSRGLNERETGIK------------R-KSAVIIDNMCKLVEDPQVIAPFLGKLLP 297 (986)
T ss_dssp HHHHHHHTSSSHHHH------------H-HHHHHHHHHHTTCCCHHHHHHHHTTTHH
T ss_pred HHHHhhhccCcchhh------------e-eeEEEEcchhhhcCCHHHHhhhhhhhhh
Confidence 777777766655443 2 448999999999999986 44444444
No 80
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=92.73 E-value=0.48 Score=47.25 Aligned_cols=104 Identities=11% Similarity=0.140 Sum_probs=70.5
Q ss_pred ccCCHHHHHHHHHHhhcCCc---h---HhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHH---hhCCCCcCchhHHHHhh
Q psy11027 12 NAQNQYDAGLALSALACFTS---T---DLARDLANDIMMLLTSTKPYLRKKAVLMMYKVF---LKFPDALRPAFPRLKEK 82 (252)
Q Consensus 12 ~s~n~~~~~LAL~~la~i~~---~---el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~---~~~Pd~l~~~~~~l~~l 82 (252)
++++...+-.|+.+++.++. . +..+.+.+.+. -+.+++|.||..++.++.++- ..+|+.++...+.+.+.
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~-~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~ 537 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIP-RISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHA 537 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGG-GSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 45666666667777766552 2 22333333222 224468999999999998764 45667777778888888
Q ss_pred hCCCChhHHHHHHHHHHHHHhhCchhhhhhHHHHHH
Q psy11027 83 LEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFK 118 (252)
Q Consensus 83 L~d~d~~V~~~al~ll~ei~~~~p~~~~~l~p~l~~ 118 (252)
|.+ +.|...|+..+..+++..++.+.+..+.++.
T Consensus 538 l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~ 571 (963)
T 2x19_B 538 LGN--PELSVSSVSTLKKICRECKYDLPPYAANIVA 571 (963)
T ss_dssp TTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHH
T ss_pred hCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 865 8999999999999998766655555555544
No 81
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=92.12 E-value=0.43 Score=46.05 Aligned_cols=116 Identities=12% Similarity=0.030 Sum_probs=87.1
Q ss_pred hHHHHHhcccCCHHHHHHHHHHhhcCC--chH----hHHH-HHHHHHHhhcCCChHHHHHHHHHHHHHHhh-CCC---Cc
Q psy11027 4 TNMIRKDLNAQNQYDAGLALSALACFT--STD----LARD-LANDIMMLLTSTKPYLRKKAVLMMYKVFLK-FPD---AL 72 (252)
Q Consensus 4 ~N~i~kDL~s~n~~~~~LAL~~la~i~--~~e----l~~~-l~~~V~~lL~s~~p~VRKkA~lal~ki~~~-~Pd---~l 72 (252)
+-.+.+-|.++++.++.-|..++.++. ..+ +++. ..+.++++|.++++.++..|+-|+..+-.. +++ .+
T Consensus 50 i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I 129 (584)
T 3l6x_A 50 LPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAI 129 (584)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 445677889999999988888888776 333 2322 568899999999999999999999888653 343 22
Q ss_pred C--chhHHHHhhhCC-CChhHHHHHHHHHHHHHhhCch----hhhhhHHHHHHHh
Q psy11027 73 R--PAFPRLKEKLED-PDSGVQSAAVNVVCELARKNPK----NYLSLAPVFFKLM 120 (252)
Q Consensus 73 ~--~~~~~l~~lL~d-~d~~V~~~al~ll~ei~~~~p~----~~~~l~p~l~~lL 120 (252)
. ..++.+.++|.+ .+..+.-.|..++..++.. ++ ....-+|.+++++
T Consensus 130 ~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~~alp~Lv~LL 183 (584)
T 3l6x_A 130 KNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVDHALHALTDEV 183 (584)
T ss_dssp HHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHHHTHHHHHHHT
T ss_pred HHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHhccHHHHHHHH
Confidence 2 468999999986 6888889999899888763 33 2345578888866
No 82
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=91.68 E-value=1 Score=42.49 Aligned_cols=81 Identities=19% Similarity=0.233 Sum_probs=68.3
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhhhhhHHHHH
Q psy11027 38 LANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFF 117 (252)
Q Consensus 38 l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~~l~p~l~ 117 (252)
-+..|....+ +++-.||-|+-=+.|+|+..|++.+.+++.+.++.+|.|.+|...|+--+..+|++ +....++..+.
T Consensus 30 ~y~~Il~~~k-g~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~kiaDvL~ 106 (507)
T 3u0r_A 30 AYQVILDGVK-GGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLPRVADILT 106 (507)
T ss_dssp HHHHHHHGGG-SCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHHHHHHHHH
T ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhhhHHHHHH
Confidence 3555666544 46899999999999999999999999999999999999999999999999999986 55556666666
Q ss_pred HHhh
Q psy11027 118 KLMT 121 (252)
Q Consensus 118 ~lL~ 121 (252)
++|.
T Consensus 107 QlLq 110 (507)
T 3u0r_A 107 QLLQ 110 (507)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 6665
No 83
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=91.25 E-value=0.39 Score=44.04 Aligned_cols=84 Identities=14% Similarity=0.152 Sum_probs=70.6
Q ss_pred HHHHHHHHhhcC---CchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhCCCChhHHHHH
Q psy11027 18 DAGLALSALACF---TSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAA 94 (252)
Q Consensus 18 ~~~LAL~~la~i---~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~d~d~~V~~~a 94 (252)
.+.-.|+.+-.+ ..|++.+.+.+++.++-.+++..|||-.+-=+...++++++.+....+.+..+|.|.|+.|+-.+
T Consensus 41 ~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~d~d~~V~K~~ 120 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRDENVNVVKKA 120 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 455556666553 46889999999999999999999999999999999999999998888999999999999999877
Q ss_pred HHHHHHH
Q psy11027 95 VNVVCEL 101 (252)
Q Consensus 95 l~ll~ei 101 (252)
+.....+
T Consensus 121 I~~~tsl 127 (386)
T 3o2t_A 121 ILTMTQL 127 (386)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7655443
No 84
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=91.22 E-value=1.5 Score=42.24 Aligned_cols=110 Identities=13% Similarity=0.080 Sum_probs=82.4
Q ss_pred cCCHHHHHHHHHHhhcCC-c----hHhH------HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCC---cC-chhH
Q psy11027 13 AQNQYDAGLALSALACFT-S----TDLA------RDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDA---LR-PAFP 77 (252)
Q Consensus 13 s~n~~~~~LAL~~la~i~-~----~el~------~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~---l~-~~~~ 77 (252)
+.++.++--|..+|+|++ + .+.+ +...+.+.++|.++++.+++.|+-|+.-+-. +++. +. ..++
T Consensus 320 s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~-~~~~~~~I~~g~ip 398 (584)
T 3l6x_A 320 SKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAV-DARNKELIGKHAIP 398 (584)
T ss_dssp CCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHT-TCSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhC-ChhHHHHHHhCCHH
Confidence 568888888888888874 2 1121 2457889999999999999999999877764 4442 21 3579
Q ss_pred HHHhhhCCC--------ChhHHHHHHHHHHHHHhhCchhh-----hhhHHHHHHHhhcC
Q psy11027 78 RLKEKLEDP--------DSGVQSAAVNVVCELARKNPKNY-----LSLAPVFFKLMTTS 123 (252)
Q Consensus 78 ~l~~lL~d~--------d~~V~~~al~ll~ei~~~~p~~~-----~~l~p~l~~lL~~~ 123 (252)
++.++|.+. +..++.+|+..+..++..+|+.. ...+|.++++|.+.
T Consensus 399 ~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~ 457 (584)
T 3l6x_A 399 NLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSG 457 (584)
T ss_dssp HHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCS
T ss_pred HHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC
Confidence 999999865 34678889999999988777643 35789999999763
No 85
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=91.09 E-value=2 Score=38.49 Aligned_cols=117 Identities=10% Similarity=0.103 Sum_probs=66.5
Q ss_pred HHHHhcccCCHHHHHHHHHHhhcCCc---hHhHHH-----HHHHHHHh-hcCCChHHHHHHHHHHHHHHhhCC----CCc
Q psy11027 6 MIRKDLNAQNQYDAGLALSALACFTS---TDLARD-----LANDIMML-LTSTKPYLRKKAVLMMYKVFLKFP----DAL 72 (252)
Q Consensus 6 ~i~kDL~s~n~~~~~LAL~~la~i~~---~el~~~-----l~~~V~~l-L~s~~p~VRKkA~lal~ki~~~~P----d~l 72 (252)
.+.+=|.++++.++.-|..++.|+.. ++.-+. ..+.+.++ +.++++.+++.|+-|+..+-..++ ...
T Consensus 131 ~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~ 210 (354)
T 3nmw_A 131 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC 210 (354)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHH
Confidence 34444567777777776666666542 222111 35666665 455677777777666655544232 222
Q ss_pred --CchhHHHHhhhCCCChh----HHHHHHHHHHHHHh---hCchhh-----hhhHHHHHHHhhc
Q psy11027 73 --RPAFPRLKEKLEDPDSG----VQSAAVNVVCELAR---KNPKNY-----LSLAPVFFKLMTT 122 (252)
Q Consensus 73 --~~~~~~l~~lL~d~d~~----V~~~al~ll~ei~~---~~p~~~-----~~l~p~l~~lL~~ 122 (252)
...++.|.++|.+.+.+ +...|+..+..++. .+++.- ...+|.++++|.+
T Consensus 211 ~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~ 274 (354)
T 3nmw_A 211 AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS 274 (354)
T ss_dssp HSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTC
T ss_pred HhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcC
Confidence 24567777777765443 66667777766664 344321 2356777777764
No 86
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=90.71 E-value=1.1 Score=38.62 Aligned_cols=90 Identities=11% Similarity=0.232 Sum_probs=70.9
Q ss_pred cCCHHHHHHHHHHhhcCC--chHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhh-------CCCC---cCchh----
Q psy11027 13 AQNQYDAGLALSALACFT--STDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLK-------FPDA---LRPAF---- 76 (252)
Q Consensus 13 s~n~~~~~LAL~~la~i~--~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~-------~Pd~---l~~~~---- 76 (252)
+++..++-.-..++...+ -++++..+.+.+..++.+.+|.|-|+|+.|+..+|+. +|+. ....|
T Consensus 64 ~~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~ 143 (257)
T 3gs3_A 64 DSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILS 143 (257)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Confidence 467777777777775544 5888999999999999999999999999999999974 3432 23334
Q ss_pred ---HHHHhhhCCCChhHHHHHHHHHHHHH
Q psy11027 77 ---PRLKEKLEDPDSGVQSAAVNVVCELA 102 (252)
Q Consensus 77 ---~~l~~lL~d~d~~V~~~al~ll~ei~ 102 (252)
.++.+++.+.+.||-.+++.++..+.
T Consensus 144 ~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 144 LIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp HHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 35556677789999999999998876
No 87
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=90.68 E-value=0.44 Score=48.65 Aligned_cols=107 Identities=10% Similarity=0.109 Sum_probs=76.6
Q ss_pred CCHHHHHHHHHHhhcCCc--h----------HhHHHHHHHHHHhhc-----CCChHHHHHHHHHHHHH---HhhCCCCcC
Q psy11027 14 QNQYDAGLALSALACFTS--T----------DLARDLANDIMMLLT-----STKPYLRKKAVLMMYKV---FLKFPDALR 73 (252)
Q Consensus 14 ~n~~~~~LAL~~la~i~~--~----------el~~~l~~~V~~lL~-----s~~p~VRKkA~lal~ki---~~~~Pd~l~ 73 (252)
.+-..+=.||-+++.++. + +..+.+.+-+.+++. +++|.||..++.++.|. +..+|+.++
T Consensus 455 ~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~ 534 (980)
T 3ibv_A 455 NSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIP 534 (980)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHH
T ss_pred CCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHH
Confidence 445666777777665542 1 123346666667765 68999999999999885 456787777
Q ss_pred chhHHHHh--hhCCCChhHHHHHHHHHHHHHhhCchhhhhhHHHHHHHh
Q psy11027 74 PAFPRLKE--KLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM 120 (252)
Q Consensus 74 ~~~~~l~~--lL~d~d~~V~~~al~ll~ei~~~~p~~~~~l~p~l~~lL 120 (252)
...+.+.+ -+.++++.|..+|..++..+|+.-+....+.++.++..+
T Consensus 535 ~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l 583 (980)
T 3ibv_A 535 ALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAML 583 (980)
T ss_dssp HHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHT
T ss_pred HHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHH
Confidence 77777777 777899999999999999999877654445555555544
No 88
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=90.20 E-value=2.9 Score=38.84 Aligned_cols=118 Identities=10% Similarity=0.103 Sum_probs=81.3
Q ss_pred HHHHHhcccCCHHHHHHHHHHhhcCCc---hHhHHH-----HHHHHHHh-hcCCChHHHHHHHHHHHHHHhhCC----CC
Q psy11027 5 NMIRKDLNAQNQYDAGLALSALACFTS---TDLARD-----LANDIMML-LTSTKPYLRKKAVLMMYKVFLKFP----DA 71 (252)
Q Consensus 5 N~i~kDL~s~n~~~~~LAL~~la~i~~---~el~~~-----l~~~V~~l-L~s~~p~VRKkA~lal~ki~~~~P----d~ 71 (252)
..+.+=|.++++.++.-|..+++++.. ++.-+. ..+.+.++ +.++++.+++.|+-|+..+-..++ .+
T Consensus 246 p~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I 325 (458)
T 3nmz_A 246 RALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADI 325 (458)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 345555778999999988888888764 232222 45777886 456788999988888876655333 23
Q ss_pred c--CchhHHHHhhhCCCChh----HHHHHHHHHHHHHh---hCchhh-----hhhHHHHHHHhhc
Q psy11027 72 L--RPAFPRLKEKLEDPDSG----VQSAAVNVVCELAR---KNPKNY-----LSLAPVFFKLMTT 122 (252)
Q Consensus 72 l--~~~~~~l~~lL~d~d~~----V~~~al~ll~ei~~---~~p~~~-----~~l~p~l~~lL~~ 122 (252)
. ...++.|.++|.+.+.+ +...|+..+..++. .+++.- ...+|.++++|.+
T Consensus 326 ~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~ 390 (458)
T 3nmz_A 326 CAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS 390 (458)
T ss_dssp HHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSC
T ss_pred HHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcC
Confidence 2 24678999999876554 88888888888876 455422 2467888888875
No 89
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=89.62 E-value=0.85 Score=39.07 Aligned_cols=66 Identities=21% Similarity=0.181 Sum_probs=39.8
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHHhhCCCCcC---chhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchh
Q psy11027 42 IMMLLTSTKPYLRKKAVLMMYKVFLKFPDALR---PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKN 108 (252)
Q Consensus 42 V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~---~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~ 108 (252)
+.+...|+++.|||-|..+... +.+-|.... ..++.+..+..|++..|..+.-+.+.++++++|+.
T Consensus 144 ~~~W~~d~n~~VRR~Ase~~rp-W~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~ 212 (240)
T 3l9t_A 144 IDEWLKSSNLHTRRAATEGLRI-WTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDL 212 (240)
T ss_dssp HHHHHHCSSHHHHHHHHHHTCS-GGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCCCHHHHHHHHHhhHH-HhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHH
Confidence 4445556666666666666532 222222211 13566666777777788877777888888777763
No 90
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=89.57 E-value=0.87 Score=45.57 Aligned_cols=100 Identities=15% Similarity=0.109 Sum_probs=64.1
Q ss_pred CCHHHHHHHHHHhhcCCc---hH---hHHHHHHHHHHhhc--CCChHHHHHHHHHHHHHHh---hCCCCcCchhHHHHhh
Q psy11027 14 QNQYDAGLALSALACFTS---TD---LARDLANDIMMLLT--STKPYLRKKAVLMMYKVFL---KFPDALRPAFPRLKEK 82 (252)
Q Consensus 14 ~n~~~~~LAL~~la~i~~---~e---l~~~l~~~V~~lL~--s~~p~VRKkA~lal~ki~~---~~Pd~l~~~~~~l~~l 82 (252)
++...+=.|+.+++.++. .+ ..+.+.+ +...+. +++|.||..|+.++.++-. .+|+.++...+.+.+.
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~ 554 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRG 554 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 566667777777877752 22 2333444 333334 3589999999999988654 4566666667777777
Q ss_pred hCCCChhHHHHHHHHHHHHHhhCchhhhhhHHHHH
Q psy11027 83 LEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFF 117 (252)
Q Consensus 83 L~d~d~~V~~~al~ll~ei~~~~p~~~~~l~p~l~ 117 (252)
| | +.|...|..++..+++.-++...+..|.++
T Consensus 555 l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll 586 (971)
T 2x1g_F 555 L-N--SSMSAQATLGLKELCRDCQLQLKPYADPLL 586 (971)
T ss_dssp H-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred h-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 7 4 889999999999999766554444444443
No 91
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=89.48 E-value=4.1 Score=40.54 Aligned_cols=116 Identities=17% Similarity=0.197 Sum_probs=79.5
Q ss_pred HHHHHHHHHHhhcCCc---hH----hHH--HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCc-Cch----------
Q psy11027 16 QYDAGLALSALACFTS---TD----LAR--DLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDAL-RPA---------- 75 (252)
Q Consensus 16 ~~~~~LAL~~la~i~~---~e----l~~--~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l-~~~---------- 75 (252)
.+...+||+-+|.... ++ +.+ -..+.+..+|.+.++.|||.|+-++.-+.. +|+.+ ..+
T Consensus 576 ~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~-~~e~i~~k~~~~~~~~~~~ 654 (778)
T 3opb_A 576 NYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS-HPLTIAAKFFNLENPQSLR 654 (778)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHT-SGGGTGGGTSCCSSHHHHH
T ss_pred HHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHhhcCchhhc
Confidence 4456677777777752 23 444 256788899999999999999999998885 77653 222
Q ss_pred -hHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhhh------hhHHHHHHHhhcC-CChhHHHHH
Q psy11027 76 -FPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL------SLAPVFFKLMTTS-SNNWMLIKI 132 (252)
Q Consensus 76 -~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~------~l~p~l~~lL~~~-~~pwlqiki 132 (252)
++.+..++...|..+..+|...+.-+...+|...+ ..+..++.++... .++=+|.+.
T Consensus 655 rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~ 719 (778)
T 3opb_A 655 NFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRL 719 (778)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHH
Confidence 34577888889999999998888887655654321 3455666676653 454444433
No 92
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=89.38 E-value=2.7 Score=36.46 Aligned_cols=108 Identities=10% Similarity=0.002 Sum_probs=77.5
Q ss_pred ccCCHHHHHHHHHHhhcCC----------chHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHh
Q psy11027 12 NAQNQYDAGLALSALACFT----------STDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKE 81 (252)
Q Consensus 12 ~s~n~~~~~LAL~~la~i~----------~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~ 81 (252)
.++|+.+..-+|..+..+- ++.-+..+.|.+.+-+.+++..||.++--.+..+...+|. ...++.+.+
T Consensus 97 ~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~--~~v~~~l~~ 174 (266)
T 2of3_A 97 FETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP--LKMTPMLLD 174 (266)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH--HHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH--HHHHHHHHH
Confidence 3789988888888886641 2223456889999999999999999998888777766542 235678888
Q ss_pred hhCCCChhHHHHHHHHHHHHHhhCchhhhhhH---HHHHHHhh
Q psy11027 82 KLEDPDSGVQSAAVNVVCELARKNPKNYLSLA---PVFFKLMT 121 (252)
Q Consensus 82 lL~d~d~~V~~~al~ll~ei~~~~p~~~~~l~---p~l~~lL~ 121 (252)
-+.++|.-+....+..+..+...+.-...... |.+.+.+.
T Consensus 175 g~ksKN~R~R~e~l~~l~~li~~~G~~~~~~l~~~~~ia~ll~ 217 (266)
T 2of3_A 175 ALKSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPFVG 217 (266)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHHHCSGGGGGGCHHHHHGGGGG
T ss_pred HHccCCHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHc
Confidence 88999999999999888888765422222233 55554443
No 93
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=88.51 E-value=1 Score=46.17 Aligned_cols=99 Identities=15% Similarity=0.229 Sum_probs=68.2
Q ss_pred HHHHhccc--CCHHHHHHHHHHhhcCC---chH----hHHHHHHHHHHhhcC-----CChHHHHHHHHHHHH---HHhhC
Q psy11027 6 MIRKDLNA--QNQYDAGLALSALACFT---STD----LARDLANDIMMLLTS-----TKPYLRKKAVLMMYK---VFLKF 68 (252)
Q Consensus 6 ~i~kDL~s--~n~~~~~LAL~~la~i~---~~e----l~~~l~~~V~~lL~s-----~~p~VRKkA~lal~k---i~~~~ 68 (252)
.+++-+.+ .+-..+-.|+=++|+|. .++ ....+.+.+..++.+ +++.||..++.++.| .+..+
T Consensus 455 ~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~ 534 (1023)
T 4hat_C 455 KLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH 534 (1023)
T ss_dssp HHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHC
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhcc
Confidence 34444443 34555544444444433 333 344566677777653 567788888888865 45678
Q ss_pred CCCcCchhHHHHhhhCCCChhHHHHHHHHHHHHHhh
Q psy11027 69 PDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARK 104 (252)
Q Consensus 69 Pd~l~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~ 104 (252)
|+.++...+.+.+.+.|++++|..+|+..+..+|++
T Consensus 535 ~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~ 570 (1023)
T 4hat_C 535 WNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQK 570 (1023)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 888888888888888899999999999999998875
No 94
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=88.26 E-value=1.3 Score=44.15 Aligned_cols=100 Identities=11% Similarity=0.054 Sum_probs=77.0
Q ss_pred HHHHHhcccCCHHHHHHHHHHhhcCC-chHh-HHHH-----------HHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCC
Q psy11027 5 NMIRKDLNAQNQYDAGLALSALACFT-STDL-ARDL-----------ANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDA 71 (252)
Q Consensus 5 N~i~kDL~s~n~~~~~LAL~~la~i~-~~el-~~~l-----------~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~ 71 (252)
..|..=|.+.|+.++--|..+++|+. .++- ++.+ .+.+.+++.+.++-+|+.|+-|+..+--.+|..
T Consensus 609 ~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~i 688 (778)
T 3opb_A 609 STIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLI 688 (778)
T ss_dssp HHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHH
Confidence 34555567889999999999999987 3432 2222 456778999999999999998877765566643
Q ss_pred c----C--chhHHHHhhhCC--CChhHHHHHHHHHHHHHhh
Q psy11027 72 L----R--PAFPRLKEKLED--PDSGVQSAAVNVVCELARK 104 (252)
Q Consensus 72 l----~--~~~~~l~~lL~d--~d~~V~~~al~ll~ei~~~ 104 (252)
. . .+++.+..+|.+ .+++++..++.+++-++..
T Consensus 689 a~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 689 AKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 2 2 356788899988 8999999999999999963
No 95
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=87.31 E-value=2.6 Score=33.66 Aligned_cols=79 Identities=9% Similarity=0.114 Sum_probs=58.7
Q ss_pred HHHHHHHHHhhCCCCcCchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhhh------hhHHHHHHHhhcCCChhHHH
Q psy11027 57 AVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL------SLAPVFFKLMTTSSNNWMLI 130 (252)
Q Consensus 57 A~lal~ki~~~~Pd~l~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~------~l~p~l~~lL~~~~~pwlqi 130 (252)
..+-+.-+++..|+...+....|++.|.++|+.|...|+.++..+.+.-...|+ .+...+++++...++|-.+-
T Consensus 35 ~~leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~ 114 (163)
T 1x5b_A 35 LIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCE 114 (163)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHH
Confidence 345555666666766666777888999999999999999999998876455453 35566677776656788888
Q ss_pred HHhhc
Q psy11027 131 KIIKL 135 (252)
Q Consensus 131 kiLkl 135 (252)
|++.+
T Consensus 115 kil~l 119 (163)
T 1x5b_A 115 KLKSL 119 (163)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88776
No 96
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=87.23 E-value=3.1 Score=37.99 Aligned_cols=80 Identities=19% Similarity=0.162 Sum_probs=62.2
Q ss_pred HHHHHHHHH--HHhhCCCCcCchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhhhhhHHHHHHHhhcCCChhHHHHH
Q psy11027 55 KKAVLMMYK--VFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKI 132 (252)
Q Consensus 55 KkA~lal~k--i~~~~Pd~l~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~~l~p~l~~lL~~~~~pwlqiki 132 (252)
|...+.=.+ +++++|++++++++.+.++-.|++..|.-..+.++.|.|...++.....++.+..+|. ..+|-...++
T Consensus 42 Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~-d~d~~V~K~~ 120 (386)
T 3o2t_A 42 KITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLR-DENVNVVKKA 120 (386)
T ss_dssp HHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHT-CSSHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHH
Confidence 444444333 3668999999999999999999999999999999999999988887777887777776 3566555554
Q ss_pred hhc
Q psy11027 133 IKL 135 (252)
Q Consensus 133 Lkl 135 (252)
+..
T Consensus 121 I~~ 123 (386)
T 3o2t_A 121 ILT 123 (386)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 97
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=85.04 E-value=4.4 Score=40.24 Aligned_cols=95 Identities=12% Similarity=0.063 Sum_probs=69.3
Q ss_pred hcccCCHHHHHHHHHHhhcCCc-----hHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchh----HHHH
Q psy11027 10 DLNAQNQYDAGLALSALACFTS-----TDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAF----PRLK 80 (252)
Q Consensus 10 DL~s~n~~~~~LAL~~la~i~~-----~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~----~~l~ 80 (252)
++.++++.++.-|+.+++.+.. ++..+.+.+.+.+.|.+ |.|+..|+.|+.++.+..++.+.++. +.+.
T Consensus 497 ~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~ 574 (963)
T 2x19_B 497 RISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQ 574 (963)
T ss_dssp GSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4456789999999999988763 45566677777777755 88999999999999998887665544 4455
Q ss_pred hhhCC--CChhHHHHHHHHHHHHHhhCc
Q psy11027 81 EKLED--PDSGVQSAAVNVVCELARKNP 106 (252)
Q Consensus 81 ~lL~d--~d~~V~~~al~ll~ei~~~~p 106 (252)
+++.. -+......++..+..++...|
T Consensus 575 ~~l~~~~~~~~~~~~~~eai~~i~~~~~ 602 (963)
T 2x19_B 575 DVLMKQIHKTSQCMWLMQALGFLLSALQ 602 (963)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHhccCCCChHHHHHHHHHHHHHHhcCC
Confidence 55553 356677777777777775444
No 98
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=83.11 E-value=3.2 Score=34.93 Aligned_cols=67 Identities=9% Similarity=0.060 Sum_probs=41.1
Q ss_pred cccCCHHHHHHHHH----HhhcCC----chHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhH
Q psy11027 11 LNAQNQYDAGLALS----ALACFT----STDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFP 77 (252)
Q Consensus 11 L~s~n~~~~~LAL~----~la~i~----~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~ 77 (252)
..|+|++.+-.|+. .++... ..+-.+.+...+...+.|...+|||...=++..+.+++|+.+..+..
T Consensus 117 ~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~~~~~~al~ 191 (235)
T 1t06_A 117 IASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYVPLHEKAVE 191 (235)
T ss_dssp HHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 35667777777766 445433 12334445555555666777777777777777777777776665554
No 99
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=82.41 E-value=7.3 Score=39.70 Aligned_cols=87 Identities=13% Similarity=0.105 Sum_probs=45.5
Q ss_pred cCCHHHHHHHHHHhh----cCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhh-CCCC
Q psy11027 13 AQNQYDAGLALSALA----CFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKL-EDPD 87 (252)
Q Consensus 13 s~n~~~~~LAL~~la----~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL-~d~d 87 (252)
+.||+++.-|.-+++ ..++++-++.+... +.++.+..||+.|++++..+.-..|+. .+++.+.| .+.|
T Consensus 553 ~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~---~~~d~~d~VRraAViaLGlI~~g~~e~----v~rlv~~L~~~~d 625 (963)
T 4ady_A 553 SDESLLRYGGAFTIALAYAGTGNNSAVKRLLHV---AVSDSNDDVRRAAVIALGFVLLRDYTT----VPRIVQLLSKSHN 625 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHH---HHHCSCHHHHHHHHHHHHHHTSSSCSS----HHHHTTTGGGCSC
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH---hccCCcHHHHHHHHHHHHhhccCCHHH----HHHHHHHHHhcCC
Confidence 355666655544442 33344444433222 224566677777777777665445542 34444433 3567
Q ss_pred hhHHHHHHHHHHHHHhhCc
Q psy11027 88 SGVQSAAVNVVCELARKNP 106 (252)
Q Consensus 88 ~~V~~~al~ll~ei~~~~p 106 (252)
+.|.-+|.-.+-.++.-+|
T Consensus 626 ~~VR~gAalALGli~aGn~ 644 (963)
T 4ady_A 626 AHVRCGTAFALGIACAGKG 644 (963)
T ss_dssp HHHHHHHHHHHHHHTSSSC
T ss_pred HHHHHHHHHHHHHhccCCC
Confidence 7777666555555544444
No 100
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=82.27 E-value=2.1 Score=41.54 Aligned_cols=113 Identities=11% Similarity=0.042 Sum_probs=70.2
Q ss_pred HHhcccCCHHHHHHHHHHhhcCCc-hHhHH-----HHHHH-HHHhhcCCChHHHHHHHHHHHHHHhh-CCCCcC-----c
Q psy11027 8 RKDLNAQNQYDAGLALSALACFTS-TDLAR-----DLAND-IMMLLTSTKPYLRKKAVLMMYKVFLK-FPDALR-----P 74 (252)
Q Consensus 8 ~kDL~s~n~~~~~LAL~~la~i~~-~el~~-----~l~~~-V~~lL~s~~p~VRKkA~lal~ki~~~-~Pd~l~-----~ 74 (252)
.+.|+|+++..+..|+.+++++.. +++-+ .+... +.++++++++-||..|+-|+..+-.. .+|... +
T Consensus 40 l~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~ 119 (684)
T 4gmo_A 40 LKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLD 119 (684)
T ss_dssp HHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTT
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcC
Confidence 356999999999999999999883 44433 23333 45678899999999999888665443 244332 2
Q ss_pred hhHHHHhhhCC-------CC--------------hhHHHHHHHHHHHHHhhCchhhh-----hhHHHHHHHh
Q psy11027 75 AFPRLKEKLED-------PD--------------SGVQSAAVNVVCELARKNPKNYL-----SLAPVFFKLM 120 (252)
Q Consensus 75 ~~~~l~~lL~d-------~d--------------~~V~~~al~ll~ei~~~~p~~~~-----~l~p~l~~lL 120 (252)
.++.+..+|.. .. +.+...+++++..+|..+.+.+. ..+|.++..|
T Consensus 120 il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L 191 (684)
T 4gmo_A 120 VLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL 191 (684)
T ss_dssp HHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence 34444444321 00 13445567777777776655332 3456666555
No 101
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=80.49 E-value=7.5 Score=30.06 Aligned_cols=60 Identities=22% Similarity=0.293 Sum_probs=40.2
Q ss_pred hHHHHHhcccCCHHHHHHHHHHhhc----CCc---hHh-HHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q psy11027 4 TNMIRKDLNAQNQYDAGLALSALAC----FTS---TDL-ARDLANDIMMLLTSTKPYLRKKAVLMMYK 63 (252)
Q Consensus 4 ~N~i~kDL~s~n~~~~~LAL~~la~----i~~---~el-~~~l~~~V~~lL~s~~p~VRKkA~lal~k 63 (252)
+-.|+|=|+++||.++-.||+.+-. -|. .++ .+++.+++.++++.+++.||+|..-.+..
T Consensus 44 ~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~ 111 (140)
T 3ldz_A 44 LRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVE 111 (140)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 4578888999999999999887722 111 122 13455566666666788898888666543
No 102
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=79.95 E-value=1.7 Score=36.17 Aligned_cols=86 Identities=9% Similarity=-0.038 Sum_probs=59.6
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhhhhhHHHHHHH
Q psy11027 40 NDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKL 119 (252)
Q Consensus 40 ~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~~l~p~l~~l 119 (252)
+.+.+...|+++++||-|+.+.+.. ....+ ....++.+...+.|++..|-.+.-..+.++.+++|+....++ +
T Consensus 127 ~~i~~W~~s~~~w~rR~ai~~~l~~-~~~~~-~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~fl----~- 199 (220)
T 2b6c_A 127 TIFALFYGAENFWNRRVALNLQLML-KEKTN-QDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEELM----K- 199 (220)
T ss_dssp HHHHHHTTCSSHHHHHHHHHTTTTC-GGGCC-HHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHH----H-
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHH-HHCCC-HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHHHH----h-
Confidence 4466777899999999999977533 22221 123456666688999999999999999999999998544433 1
Q ss_pred hhcCCChhHHHHHh
Q psy11027 120 MTTSSNNWMLIKII 133 (252)
Q Consensus 120 L~~~~~pwlqikiL 133 (252)
.+.-++|..-+.+
T Consensus 200 -~~~l~~~~~r~Ai 212 (220)
T 2b6c_A 200 -ELVLSPLAQREGS 212 (220)
T ss_dssp -HSCCCHHHHHHHT
T ss_pred -hccCCHHHHHHHH
Confidence 1223667665544
No 103
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=79.51 E-value=4.7 Score=41.59 Aligned_cols=91 Identities=14% Similarity=0.218 Sum_probs=58.0
Q ss_pred HHHHHHHHHhhcCCchH----hHHHHHHHHHHhhcCC-----ChHHHHHHHHHHH---HHHhhCCCCcCchhHHHHhhhC
Q psy11027 17 YDAGLALSALACFTSTD----LARDLANDIMMLLTST-----KPYLRKKAVLMMY---KVFLKFPDALRPAFPRLKEKLE 84 (252)
Q Consensus 17 ~~~~LAL~~la~i~~~e----l~~~l~~~V~~lL~s~-----~p~VRKkA~lal~---ki~~~~Pd~l~~~~~~l~~lL~ 84 (252)
..-+.|+.+||+--.++ ....+.+.+..+..+. ++.++...+..+. +..+.+|+.++...+.+.+.+.
T Consensus 497 ea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~ 576 (1073)
T 3gjx_A 497 NTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMH 576 (1073)
T ss_dssp HHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHh
Confidence 34467777775422332 3334444444444333 2334433333443 3566778887777888888889
Q ss_pred CCChhHHHHHHHHHHHHHhhCch
Q psy11027 85 DPDSGVQSAAVNVVCELARKNPK 107 (252)
Q Consensus 85 d~d~~V~~~al~ll~ei~~~~p~ 107 (252)
|++++|..+|+..+..+|++=.+
T Consensus 577 ~~~~~vq~aA~~af~~i~~~C~~ 599 (1073)
T 3gjx_A 577 ETHDGVQDMACDTFIKIAQKCRR 599 (1073)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTGG
T ss_pred cCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998876444
No 104
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=78.27 E-value=20 Score=30.54 Aligned_cols=81 Identities=10% Similarity=-0.015 Sum_probs=55.1
Q ss_pred ccCCHHHHHHHHHHhhcCCchHhHHHHHHHHHH-hhcCCChHHHHHHHHHHHHHHh-hCCCCcCchhHHHHhhhCCCChh
Q psy11027 12 NAQNQYDAGLALSALACFTSTDLARDLANDIMM-LLTSTKPYLRKKAVLMMYKVFL-KFPDALRPAFPRLKEKLEDPDSG 89 (252)
Q Consensus 12 ~s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~-lL~s~~p~VRKkA~lal~ki~~-~~Pd~l~~~~~~l~~lL~d~d~~ 89 (252)
+++...++++|...++.. . .. +++.+.+.+ +-.+.+-.||--++.++..+.. .+|+. ..+.+.+...|+|+.
T Consensus 81 ~~~~deVR~~Av~lLg~~-~-~~-~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~---~l~~~~~W~~d~n~~ 154 (240)
T 3l9t_A 81 QSDVYQVRMYAVFLFGYL-S-KD-KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK---ALPIIDEWLKSSNLH 154 (240)
T ss_dssp TCSSHHHHHHHHHHHHHT-T-TS-HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT---THHHHHHHHHCSSHH
T ss_pred hCcchHHHHHHHHHHHhc-c-Cc-HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH---HHHHHHHHhcCCCHH
Confidence 355567788888777766 3 22 456666666 5556778888888888888775 77774 345566677788888
Q ss_pred HHHHHHHHH
Q psy11027 90 VQSAAVNVV 98 (252)
Q Consensus 90 V~~~al~ll 98 (252)
|.-+|.-..
T Consensus 155 VRR~Ase~~ 163 (240)
T 3l9t_A 155 TRRAATEGL 163 (240)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 877765543
No 105
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=78.07 E-value=2.7 Score=40.80 Aligned_cols=81 Identities=15% Similarity=0.113 Sum_probs=60.4
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcC-----chh-HHHHhhhCCCChhHHHHHHHHHHHHHhhC-chh----
Q psy11027 40 NDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAF-PRLKEKLEDPDSGVQSAAVNVVCELARKN-PKN---- 108 (252)
Q Consensus 40 ~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~-----~~~-~~l~~lL~d~d~~V~~~al~ll~ei~~~~-p~~---- 108 (252)
.++.+.|.|+++-.|..|+.|+..+.. +|+.-. ..+ +.+.++|.|++..|..+|..++..++... ++.
T Consensus 37 ~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l 115 (684)
T 4gmo_A 37 LPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHL 115 (684)
T ss_dssp HHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHH
Confidence 346677899999999999999999885 655322 344 45788899999999999999999888764 442
Q ss_pred hh-hhHHHHHHHhh
Q psy11027 109 YL-SLAPVFFKLMT 121 (252)
Q Consensus 109 ~~-~l~p~l~~lL~ 121 (252)
|+ ...|.+...|.
T Consensus 116 ~~~~il~~L~~~l~ 129 (684)
T 4gmo_A 116 YRLDVLTAIEHAAK 129 (684)
T ss_dssp HHTTHHHHHHHHHH
T ss_pred HHcChHHHHHHHHH
Confidence 22 35666666654
No 106
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=77.65 E-value=1.5 Score=45.08 Aligned_cols=89 Identities=12% Similarity=0.166 Sum_probs=61.9
Q ss_pred HHHHHhcccCCHHHHHHHHHHhhcCCchHhHHHHHHHHHHhhc-------CCChHHHHHHHHHHHHHHhhCCCCcCchhH
Q psy11027 5 NMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLT-------STKPYLRKKAVLMMYKVFLKFPDALRPAFP 77 (252)
Q Consensus 5 N~i~kDL~s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~-------s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~ 77 (252)
+.+.+-+.+.+...+-++|++|||++.++..+.+ .+++. +....||..|+.|+.++-...|+.+. +
T Consensus 443 ~~l~~~~~~~~~~~~~~~LkaLGN~g~p~~l~~l----~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~---~ 515 (1056)
T 1lsh_A 443 DLLSQSSDRAKEEEIVLALKALGNAGQPNSIKKI----QRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ---E 515 (1056)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTCGGGHHHH----HTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH---H
T ss_pred HHHHHHHhcCChHHHHHHHHHhhccCChhHHHHH----HHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH---H
Confidence 4455666777899999999999999999866543 34442 22456888899888776655555443 3
Q ss_pred HHHhhhC--CCChhHHHHHHHHHHH
Q psy11027 78 RLKEKLE--DPDSGVQSAAVNVVCE 100 (252)
Q Consensus 78 ~l~~lL~--d~d~~V~~~al~ll~e 100 (252)
.+.+... +.++.|..+|+.++.+
T Consensus 516 il~~i~~n~~e~~EvRiaA~~~Lm~ 540 (1056)
T 1lsh_A 516 IVLPIFLNVAIKSELRIRSCIVFFE 540 (1056)
T ss_dssp HHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCChHHHHHHHHHHHH
Confidence 4445553 4688888888887765
No 107
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=77.17 E-value=15 Score=29.13 Aligned_cols=59 Identities=24% Similarity=0.268 Sum_probs=38.2
Q ss_pred hHHHHHhcccCCHHHHHHHHHHh----hcCC---chHhH-HHHHHHHHHhhcC-CChHHHHHHHHHHH
Q psy11027 4 TNMIRKDLNAQNQYDAGLALSAL----ACFT---STDLA-RDLANDIMMLLTS-TKPYLRKKAVLMMY 62 (252)
Q Consensus 4 ~N~i~kDL~s~n~~~~~LAL~~l----a~i~---~~el~-~~l~~~V~~lL~s-~~p~VRKkA~lal~ 62 (252)
+-.|+|=|+++||.++-+||+.+ -|-| -.+++ +.+.+++.+++.. .++.||+|+.-.+.
T Consensus 54 ~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~ 121 (163)
T 1x5b_A 54 LKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMV 121 (163)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 45688888899999988888877 1111 11332 3455566666654 56788888766543
No 108
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=76.55 E-value=8.4 Score=32.22 Aligned_cols=79 Identities=15% Similarity=0.152 Sum_probs=55.3
Q ss_pred HHHHHHHHHhhCCCCcCchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhhh------hhHHHHHHHhhcCCChhHHH
Q psy11027 57 AVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL------SLAPVFFKLMTTSSNNWMLI 130 (252)
Q Consensus 57 A~lal~ki~~~~Pd~l~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~------~l~p~l~~lL~~~~~pwlqi 130 (252)
+.+-+.=+++..++-..+....|++.|.++|+.|+..|+.++..+.+.-...|+ .+...+.+++...+++=.+-
T Consensus 28 ~ileicD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~ 107 (226)
T 3zyq_A 28 SILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRN 107 (226)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHH
Confidence 344444555555555556677788899999999999999998888765444443 34455667776666777777
Q ss_pred HHhhc
Q psy11027 131 KIIKL 135 (252)
Q Consensus 131 kiLkl 135 (252)
|++.+
T Consensus 108 kil~l 112 (226)
T 3zyq_A 108 KILYL 112 (226)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88776
No 109
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=75.22 E-value=8.3 Score=30.27 Aligned_cols=68 Identities=15% Similarity=0.368 Sum_probs=45.6
Q ss_pred chHHHHHhcccCCHHHHHHHHHHhhc----CCc---hHh-HHHHHHHHHHhhcC------CChHHHHHHHHHHHHHHhhC
Q psy11027 3 TTNMIRKDLNAQNQYDAGLALSALAC----FTS---TDL-ARDLANDIMMLLTS------TKPYLRKKAVLMMYKVFLKF 68 (252)
Q Consensus 3 ~~N~i~kDL~s~n~~~~~LAL~~la~----i~~---~el-~~~l~~~V~~lL~s------~~p~VRKkA~lal~ki~~~~ 68 (252)
++-.|+|=++++||.++-+||+.+-. -|. .++ .+++.+++.++++. +++-||+|..-.+..-...+
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 128 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL 128 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence 35678999999999999999987722 111 222 23466667778763 57789988877665544444
Q ss_pred CC
Q psy11027 69 PD 70 (252)
Q Consensus 69 Pd 70 (252)
|+
T Consensus 129 ~~ 130 (149)
T 3g2s_A 129 PE 130 (149)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 110
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=75.05 E-value=2.5 Score=35.47 Aligned_cols=74 Identities=20% Similarity=0.127 Sum_probs=56.6
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhhhhhHH
Q psy11027 39 ANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAP 114 (252)
Q Consensus 39 ~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~~l~p 114 (252)
.+.+.+.+.|.++++||.|+.+....+. ..| .....+.+...+.|++..|..+.--.+.++.+++|+....++-
T Consensus 133 ~~~l~~W~~s~~~w~rR~ai~~~l~~~~-~~d-~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~fl~ 206 (232)
T 3jxy_A 133 SAYIPKWIASDNIWLQRAAILFQLKYKQ-KMD-EELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYVQ 206 (232)
T ss_dssp GGTHHHHHHSSCHHHHHHHHHTTTTCGG-GCC-HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHh-CCC-HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 3557789999999999999988755332 222 2234567778889999999999999999999999985554443
No 111
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=75.02 E-value=14 Score=30.48 Aligned_cols=79 Identities=13% Similarity=0.237 Sum_probs=57.8
Q ss_pred HHHHHHHHHhhCCCCcCchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhhh------hhHHHHHHHhhcCCChhHHH
Q psy11027 57 AVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL------SLAPVFFKLMTTSSNNWMLI 130 (252)
Q Consensus 57 A~lal~ki~~~~Pd~l~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~------~l~p~l~~lL~~~~~pwlqi 130 (252)
..+.+.-+++..|+...+....|++.|.++|+.|..-|+.++..+.+.-.+.|+ .+...+.+++++.+++=.+-
T Consensus 25 ~~leicd~i~~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~ 104 (220)
T 1dvp_A 25 SILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQ 104 (220)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHH
T ss_pred HHHHHHHhhcCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHH
Confidence 355666667777776667778899999999999999999999998876544453 24555666666655555666
Q ss_pred HHhhc
Q psy11027 131 KIIKL 135 (252)
Q Consensus 131 kiLkl 135 (252)
|++.+
T Consensus 105 kil~l 109 (220)
T 1dvp_A 105 KMLEL 109 (220)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77766
No 112
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=74.70 E-value=8.7 Score=30.06 Aligned_cols=62 Identities=10% Similarity=0.269 Sum_probs=43.1
Q ss_pred chHHHHHhcccCCHHHHHHHHHHh----hcCCc---hHh-HHHHHHHHHHhhcC------CChHHHHHHHHHHHHH
Q psy11027 3 TTNMIRKDLNAQNQYDAGLALSAL----ACFTS---TDL-ARDLANDIMMLLTS------TKPYLRKKAVLMMYKV 64 (252)
Q Consensus 3 ~~N~i~kDL~s~n~~~~~LAL~~l----a~i~~---~el-~~~l~~~V~~lL~s------~~p~VRKkA~lal~ki 64 (252)
++-.|+|=++++||.++-+||+.+ -|-|. .++ .+.+.+++.++++. +++.||+|..-.+..-
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSW 114 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHH
Confidence 356789999999999999999887 22221 233 24567777888763 4778998886655443
No 113
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=74.53 E-value=8.1 Score=37.66 Aligned_cols=115 Identities=14% Similarity=0.113 Sum_probs=88.0
Q ss_pred HHHhcccCCHHHHHHHHHHhhcCC--chH-hHHH------HHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCc-----
Q psy11027 7 IRKDLNAQNQYDAGLALSALACFT--STD-LARD------LANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDAL----- 72 (252)
Q Consensus 7 i~kDL~s~n~~~~~LAL~~la~i~--~~e-l~~~------l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l----- 72 (252)
+-.=|.+.+.|++--|++.+..+. .++ .-+. -.+.++.+|++++..+|=.|.+.+..+-+.++++-
T Consensus 127 Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAF 206 (651)
T 3grl_A 127 LLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAF 206 (651)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 344467899999999999998766 344 3332 34667888899999999999999999999999853
Q ss_pred CchhHHHHhhhCCCCh----hHHHHHHHHHHHHHhhCch---hhh--hhHHHHHHHhh
Q psy11027 73 RPAFPRLKEKLEDPDS----GVQSAAVNVVCELARKNPK---NYL--SLAPVFFKLMT 121 (252)
Q Consensus 73 ~~~~~~l~~lL~d~d~----~V~~~al~ll~ei~~~~p~---~~~--~l~p~l~~lL~ 121 (252)
+..|+++.+.+.+... -|+.-++.++..+++.||. .|+ +.+|.+.++|.
T Consensus 207 EnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~ 264 (651)
T 3grl_A 207 ENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFE 264 (651)
T ss_dssp TTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGC
T ss_pred hccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhC
Confidence 4678999999976544 5667788899999999974 454 36677666665
No 114
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=74.22 E-value=12 Score=28.79 Aligned_cols=77 Identities=10% Similarity=0.118 Sum_probs=50.6
Q ss_pred HHHHHHHHhhCCCCcCchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhhh------hhHHHHHHHhhcCCChhHHHH
Q psy11027 58 VLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL------SLAPVFFKLMTTSSNNWMLIK 131 (252)
Q Consensus 58 ~lal~ki~~~~Pd~l~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~------~l~p~l~~lL~~~~~pwlqik 131 (252)
.+-+.=..+..|+.-.+....+++.|.++||.|...|+.++..+.+.-...|+ .+...+.+++++ ++|=.+-|
T Consensus 26 ileicD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~-~~~~Vk~k 104 (140)
T 3ldz_A 26 ILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNK-GHPKVCEK 104 (140)
T ss_dssp HHHHHHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHH-SCHHHHHH
T ss_pred HHHHHHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhcc-CCHHHHHH
Confidence 33344444555544445566678889999999999999998777765444443 355566666654 46666667
Q ss_pred Hhhc
Q psy11027 132 IIKL 135 (252)
Q Consensus 132 iLkl 135 (252)
++.+
T Consensus 105 il~l 108 (140)
T 3ldz_A 105 LKAL 108 (140)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7666
No 115
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=72.57 E-value=15 Score=28.81 Aligned_cols=79 Identities=14% Similarity=0.125 Sum_probs=54.6
Q ss_pred HHHHHHHHHhhCCCCcCchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhhh------hhHHHHHHHhhc-----CCC
Q psy11027 57 AVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL------SLAPVFFKLMTT-----SSN 125 (252)
Q Consensus 57 A~lal~ki~~~~Pd~l~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~------~l~p~l~~lL~~-----~~~ 125 (252)
+.+-+.=.++..|+.-.+....+++.|.++||.|...|+.++..+.+.-...|+ .+...++++++. .++
T Consensus 31 ~ileicD~I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~ 110 (149)
T 3g2s_A 31 SINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTS 110 (149)
T ss_dssp HHHHHHHHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSC
T ss_pred HHHHHHHHHHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCC
Confidence 445555556666655556677788899999999999999999888876555553 355566677653 245
Q ss_pred hhHHHHHhhc
Q psy11027 126 NWMLIKIIKL 135 (252)
Q Consensus 126 pwlqikiLkl 135 (252)
+=.+-|++.+
T Consensus 111 ~~Vk~kil~l 120 (149)
T 3g2s_A 111 EKVKNKILEL 120 (149)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5566677666
No 116
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=72.54 E-value=13 Score=37.02 Aligned_cols=100 Identities=11% Similarity=0.021 Sum_probs=62.2
Q ss_pred HHHHHhhcCCchHhHHHHHHHHHHhhcC-----CChHHHHHHHHHHHHHHhhCCCCcCch----hHHHHhhh-CCCChhH
Q psy11027 21 LALSALACFTSTDLARDLANDIMMLLTS-----TKPYLRKKAVLMMYKVFLKFPDALRPA----FPRLKEKL-EDPDSGV 90 (252)
Q Consensus 21 LAL~~la~i~~~el~~~l~~~V~~lL~s-----~~p~VRKkA~lal~ki~~~~Pd~l~~~----~~~l~~lL-~d~d~~V 90 (252)
-+|..++.+...++.+.+.+.+.+.+.+ .+...|..|..|+..+-+..++..... ++.+.++. .|.++.|
T Consensus 443 ~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~v 522 (971)
T 2x1g_F 443 DTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKL 522 (971)
T ss_dssp HHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHH
Confidence 3466677777778888888888888765 567788888888877766554433333 33232222 2568999
Q ss_pred HHHHHHHHHHHHh---hCchhhhhhHHHHHHHh
Q psy11027 91 QSAAVNVVCELAR---KNPKNYLSLAPVFFKLM 120 (252)
Q Consensus 91 ~~~al~ll~ei~~---~~p~~~~~l~p~l~~lL 120 (252)
...++.++..++. .+|+.+..+.|.+++.|
T Consensus 523 r~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l 555 (971)
T 2x1g_F 523 LGTALETMGSYCNWLMENPAYIPPAINLLVRGL 555 (971)
T ss_dssp HHHHHHHHHHTHHHHC----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 9999888877664 34555666677666655
No 117
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=71.09 E-value=3.5 Score=34.26 Aligned_cols=70 Identities=13% Similarity=0.075 Sum_probs=51.3
Q ss_pred HHHhcccCCHHHHHHHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchh
Q psy11027 7 IRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAF 76 (252)
Q Consensus 7 i~kDL~s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~ 76 (252)
+.+=..|+|++++-.|+-+.=.....+-.+.+.+-+..++.|++.||||..+=++--+.+++||.+..+.
T Consensus 129 i~~W~~s~~~w~rR~ai~~~l~~~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~fl 198 (220)
T 2b6c_A 129 FALFYGAENFWNRRVALNLQLMLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEELM 198 (220)
T ss_dssp HHHHTTCSSHHHHHHHHHTTTTCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 4455678999999999775532222222344445455588899999999999999999999999877655
No 118
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=71.07 E-value=5.9 Score=41.10 Aligned_cols=81 Identities=12% Similarity=0.220 Sum_probs=57.8
Q ss_pred HHHHHHHHhh---cCCChHHHHHHHHHHHHH---HhhCCCCcCchhHHHHhhhCCC------------ChhHHHHHHHHH
Q psy11027 37 DLANDIMMLL---TSTKPYLRKKAVLMMYKV---FLKFPDALRPAFPRLKEKLEDP------------DSGVQSAAVNVV 98 (252)
Q Consensus 37 ~l~~~V~~lL---~s~~p~VRKkA~lal~ki---~~~~Pd~l~~~~~~l~~lL~d~------------d~~V~~~al~ll 98 (252)
.+.+.+...+ ...+|.+|.+++.|+.+. +..+|+.++...+.+.+.+.+. +..|..+|.+.+
T Consensus 529 ~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al 608 (1204)
T 3a6p_A 529 NDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSI 608 (1204)
T ss_dssp HHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHH
Confidence 3455566554 336899999999987543 4567888877777777776652 237889999999
Q ss_pred HHHHhhCchhhhhhHHHHH
Q psy11027 99 CELARKNPKNYLSLAPVFF 117 (252)
Q Consensus 99 ~ei~~~~p~~~~~l~p~l~ 117 (252)
..+|+.-|+.+.+..+.+.
T Consensus 609 ~~L~~~~~~~L~p~~~~i~ 627 (1204)
T 3a6p_A 609 IKMCRDYPQLVLPNFDMLY 627 (1204)
T ss_dssp HHHHHHCHHHHGGGHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHH
Confidence 9999988876655555443
No 119
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=70.74 E-value=8.1 Score=32.25 Aligned_cols=80 Identities=13% Similarity=0.111 Sum_probs=43.1
Q ss_pred ccCCHHHHHHHHHHhhcCC---chHhHHHHHHHHHHhhcC-CCh-HHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhCCC
Q psy11027 12 NAQNQYDAGLALSALACFT---STDLARDLANDIMMLLTS-TKP-YLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDP 86 (252)
Q Consensus 12 ~s~n~~~~~LAL~~la~i~---~~el~~~l~~~V~~lL~s-~~p-~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~d~ 86 (252)
.++....+.+|+..+.... +++-.+ .+...+.. ++- .+---|.-++.++++++|+.. ++.+.+...|.
T Consensus 71 ~~~~~E~r~~ai~~l~~~~k~~~~~~l~----~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~~~---~~~l~~W~~s~ 143 (232)
T 3jxy_A 71 DLPEREFQAAALDIMQKYKKHINETHIP----FLEELIVTKSWWDSVDSIVPTFLGDIFLKHPELI---SAYIPKWIASD 143 (232)
T ss_dssp TSSBHHHHHHHHHHHHHTGGGCCGGGHH----HHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGGGG---GGTHHHHHHSS
T ss_pred cCcHHHHHHHHHHHHHHHHHhCCHHHHH----HHHHHHccCCChHHHHHhhHHHHHHHHHHCHHHH---HHHHHHHhcCC
Confidence 3455668888887775321 232222 22233322 222 222223344567788888732 34566677788
Q ss_pred ChhHHHHHHHHH
Q psy11027 87 DSGVQSAAVNVV 98 (252)
Q Consensus 87 d~~V~~~al~ll 98 (252)
|+-+.-.|+..+
T Consensus 144 ~~w~rR~ai~~~ 155 (232)
T 3jxy_A 144 NIWLQRAAILFQ 155 (232)
T ss_dssp CHHHHHHHHHTT
T ss_pred chHHHHHHHHHH
Confidence 888877776544
No 120
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=70.16 E-value=13 Score=28.97 Aligned_cols=79 Identities=13% Similarity=0.113 Sum_probs=52.7
Q ss_pred HHHHHHHHHhhCCCCcCchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhhh------hhHHHHHHHhhc-----CCC
Q psy11027 57 AVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL------SLAPVFFKLMTT-----SSN 125 (252)
Q Consensus 57 A~lal~ki~~~~Pd~l~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~------~l~p~l~~lL~~-----~~~ 125 (252)
+.+-+.-.++..|+.-.+....+++.|.++|+.|...|+.++..+.+.-...|+ .+...++++++. .++
T Consensus 21 ~~leicD~I~~~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~ 100 (148)
T 1mhq_A 21 AIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWAT 100 (148)
T ss_dssp HHHHHHHHHHHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCC
T ss_pred HHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCC
Confidence 344444555555554455667788899999999999999999998876555553 344455555542 135
Q ss_pred hhHHHHHhhc
Q psy11027 126 NWMLIKIIKL 135 (252)
Q Consensus 126 pwlqikiLkl 135 (252)
+=.+-|++.+
T Consensus 101 ~~Vk~kil~l 110 (148)
T 1mhq_A 101 GKVKGRVIEI 110 (148)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5566677766
No 121
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=69.69 E-value=17 Score=29.03 Aligned_cols=80 Identities=14% Similarity=0.167 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhhCCCCcCchhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhhh------hhHHHHHHHhhc-----CC
Q psy11027 56 KAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL------SLAPVFFKLMTT-----SS 124 (252)
Q Consensus 56 kA~lal~ki~~~~Pd~l~~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~------~l~p~l~~lL~~-----~~ 124 (252)
...+-+.-.++..|+...+....|++.|.++|+.|...|+.++..+.+.-...|+ .+...++++++. ..
T Consensus 32 ~~ileicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~ 111 (171)
T 1juq_A 32 EYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRV 111 (171)
T ss_dssp HHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTS
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCC
Confidence 4566677777777776667778899999999999999999999998875444454 344566666642 23
Q ss_pred ChhHHHHHhhc
Q psy11027 125 NNWMLIKIIKL 135 (252)
Q Consensus 125 ~pwlqikiLkl 135 (252)
++=.+-|++.+
T Consensus 112 ~~~Vk~kil~l 122 (171)
T 1juq_A 112 SEKVKTKVIEL 122 (171)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 44566677766
No 122
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=69.25 E-value=24 Score=36.10 Aligned_cols=117 Identities=14% Similarity=0.151 Sum_probs=81.1
Q ss_pred HHHHHhcccC-CHHHHHHHHHHhhcCC--chHhHH---HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCC-CcCchhH
Q psy11027 5 NMIRKDLNAQ-NQYDAGLALSALACFT--STDLAR---DLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPD-ALRPAFP 77 (252)
Q Consensus 5 N~i~kDL~s~-n~~~~~LAL~~la~i~--~~el~~---~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd-~l~~~~~ 77 (252)
..++|-+.+. ++.-.++++..++.-. ++.+-+ .+.+.+.....+..+.||+.|-.|+..++...|. .+....|
T Consensus 57 ~~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~ 136 (986)
T 2iw3_A 57 GELAKGIKDKKTAANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLP 136 (986)
T ss_dssp HHHHHHHTSHHHHHHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHH
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4556655554 3455566677776432 223322 3568888999998899999999999999987664 5555678
Q ss_pred HHHhhhCCC-ChhHHHHHHHHHHHHHhhCchhhhh----hHHHHHHHhh
Q psy11027 78 RLKEKLEDP-DSGVQSAAVNVVCELARKNPKNYLS----LAPVFFKLMT 121 (252)
Q Consensus 78 ~l~~lL~d~-d~~V~~~al~ll~ei~~~~p~~~~~----l~p~l~~lL~ 121 (252)
.+.+-|.+. .-..-.+|+.++..++...|+..-. ++|.+...|.
T Consensus 137 ~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 185 (986)
T 2iw3_A 137 HLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMW 185 (986)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcc
Confidence 888888654 5678889999999999888875544 4444444443
No 123
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=68.75 E-value=15 Score=37.16 Aligned_cols=93 Identities=9% Similarity=0.079 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHhhcCC-----chHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCc--------Cch----h
Q psy11027 14 QNQYDAGLALSALACFT-----STDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDAL--------RPA----F 76 (252)
Q Consensus 14 ~n~~~~~LAL~~la~i~-----~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l--------~~~----~ 76 (252)
+.+.++.-+..+++.+. .++..+.+.+.+.+.|.++++-||..|+.|+.++.+..++.+ .++ .
T Consensus 512 ~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il 591 (1049)
T 3m1i_C 512 NKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTII 591 (1049)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHH
Confidence 34555555666776543 466777788888889999999999999999999998876543 133 3
Q ss_pred HHHHhhhCCCChhHHHHHHHHHHHHHhhCc
Q psy11027 77 PRLKEKLEDPDSGVQSAAVNVVCELARKNP 106 (252)
Q Consensus 77 ~~l~~lL~d~d~~V~~~al~ll~ei~~~~p 106 (252)
+.+.+.+.+-+..-.....-.+..++...|
T Consensus 592 ~~l~~~~~~~~~~~~~~~~eai~~ii~~~~ 621 (1049)
T 3m1i_C 592 RDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1049)
T ss_dssp HTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence 444455555444444444444445544333
No 124
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=68.03 E-value=14 Score=29.49 Aligned_cols=67 Identities=12% Similarity=0.383 Sum_probs=44.1
Q ss_pred chHHHHHhcccCCHHHHHHHHHHhhc-CC--c----hHhH-HHHHHHHHHhhcC------CChHHHHHHHHHHHHHHhhC
Q psy11027 3 TTNMIRKDLNAQNQYDAGLALSALAC-FT--S----TDLA-RDLANDIMMLLTS------TKPYLRKKAVLMMYKVFLKF 68 (252)
Q Consensus 3 ~~N~i~kDL~s~n~~~~~LAL~~la~-i~--~----~el~-~~l~~~V~~lL~s------~~p~VRKkA~lal~ki~~~~ 68 (252)
++-.|+|=++++|+.++-+||+.+-. +. + .+++ +++.+++.++++. .++.||+|+.-.+..-....
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 130 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMAL 130 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 34578888999999999999988721 11 1 1222 2456667777752 46789998877765544444
Q ss_pred C
Q psy11027 69 P 69 (252)
Q Consensus 69 P 69 (252)
+
T Consensus 131 ~ 131 (171)
T 1juq_A 131 P 131 (171)
T ss_dssp T
T ss_pred C
Confidence 3
No 125
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=64.57 E-value=10 Score=38.55 Aligned_cols=72 Identities=13% Similarity=0.124 Sum_probs=57.0
Q ss_pred cCCHHHHHHHHHHhhcCC-----chHhHHHHHHHHHH--hhcCCChHHHHHHHHHHHHHHhhCCCCcCchh----HHHHh
Q psy11027 13 AQNQYDAGLALSALACFT-----STDLARDLANDIMM--LLTSTKPYLRKKAVLMMYKVFLKFPDALRPAF----PRLKE 81 (252)
Q Consensus 13 s~n~~~~~LAL~~la~i~-----~~el~~~l~~~V~~--lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~----~~l~~ 81 (252)
.++|.++..+..+++... .++..+.+.+-+.. .+.++++.||.+|+.++.++.+..+..+.+.. ..+..
T Consensus 506 ~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~ 585 (980)
T 3ibv_A 506 HPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGD 585 (980)
T ss_dssp CCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTG
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHH
Confidence 678999999999998754 46777777777777 77788999999999999999999987665543 44444
Q ss_pred hhC
Q psy11027 82 KLE 84 (252)
Q Consensus 82 lL~ 84 (252)
+|.
T Consensus 586 lL~ 588 (980)
T 3ibv_A 586 LLN 588 (980)
T ss_dssp GGC
T ss_pred hhc
Confidence 454
No 126
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=64.33 E-value=8.3 Score=32.68 Aligned_cols=68 Identities=13% Similarity=0.101 Sum_probs=45.1
Q ss_pred HHHHhcccCCHHHHHHHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhCC
Q psy11027 6 MIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLED 85 (252)
Q Consensus 6 ~i~kDL~s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~d 85 (252)
.+.+=++++++.++..|...++ ++ .+..+++++++.||+.++-.+ | .+.+..+++|
T Consensus 102 ~L~~ll~D~d~~VR~~aA~~l~----~~-------~L~~L~~D~d~~VR~~aA~~l-------~------~~~l~~l~~D 157 (244)
T 1lrv_A 102 QLSALMFDEDREVRITVADRLP----LE-------QLEQMAADRDYLVRAYVVQRI-------P------PGRLFRFMRD 157 (244)
T ss_dssp GGGGTTTCSCHHHHHHHHHHSC----TG-------GGGGGTTCSSHHHHHHHHHHS-------C------GGGGGGTTTC
T ss_pred HHHHHHcCCCHHHHHHHHHhCC----HH-------HHHHHHcCCCHHHHHHHHHhc-------C------HHHHHHHHcC
Confidence 3445567888899988887642 22 245667788888888887521 1 1234567778
Q ss_pred CChhHHHHHHHH
Q psy11027 86 PDSGVQSAAVNV 97 (252)
Q Consensus 86 ~d~~V~~~al~l 97 (252)
+|+.|..++..-
T Consensus 158 ~d~~VR~~aa~~ 169 (244)
T 1lrv_A 158 EDRQVRKLVAKR 169 (244)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHc
Confidence 888888777665
No 127
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=64.04 E-value=39 Score=28.06 Aligned_cols=57 Identities=21% Similarity=0.291 Sum_probs=39.8
Q ss_pred chHHHHHhcccCCHHHHHHHHHHhhc------------CCchHhHHHHHHHHHHhhcC-CChHHHHHHHHHHHH
Q psy11027 3 TTNMIRKDLNAQNQYDAGLALSALAC------------FTSTDLARDLANDIMMLLTS-TKPYLRKKAVLMMYK 63 (252)
Q Consensus 3 ~~N~i~kDL~s~n~~~~~LAL~~la~------------i~~~el~~~l~~~V~~lL~s-~~p~VRKkA~lal~k 63 (252)
++..|+|=|+++||.++-+||+.+-. +++.++. +++.+++.. +++.||+|+.-.+..
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl----~~l~~l~~~~~~~~Vk~kil~li~~ 115 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTM----EELKDLLKRQVEVNVRNKILYLIQA 115 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHH----HHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHH----HHHHHHhccCCCHHHHHHHHHHHHH
Confidence 35678999999999999999998822 3444444 444555543 577899987665543
No 128
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=61.58 E-value=44 Score=26.09 Aligned_cols=79 Identities=8% Similarity=0.135 Sum_probs=53.0
Q ss_pred HHHHHHHHHhhCCCCcCchhHHHHhhhC-CCChhHHHHHHHHHHHHHhhCchhhhh------hHHH-HHHHhhc--CCCh
Q psy11027 57 AVLMMYKVFLKFPDALRPAFPRLKEKLE-DPDSGVQSAAVNVVCELARKNPKNYLS------LAPV-FFKLMTT--SSNN 126 (252)
Q Consensus 57 A~lal~ki~~~~Pd~l~~~~~~l~~lL~-d~d~~V~~~al~ll~ei~~~~p~~~~~------l~p~-l~~lL~~--~~~p 126 (252)
..+-+.-.++..++...+....+++.|. .+|+.|+..|+.++..+.+.-...|+. +... +++++.. .+++
T Consensus 36 ~~leicD~I~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~ 115 (157)
T 1elk_A 36 LNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPT 115 (157)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCH
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcH
Confidence 3445555666666655667778888997 589999999999999988765555543 3444 5565532 2333
Q ss_pred hHHHHHhhc
Q psy11027 127 WMLIKIIKL 135 (252)
Q Consensus 127 wlqikiLkl 135 (252)
-.+-|++.+
T Consensus 116 ~Vk~kil~l 124 (157)
T 1elk_A 116 IVHDKVLNL 124 (157)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 566677766
No 129
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=61.49 E-value=7.4 Score=33.00 Aligned_cols=63 Identities=14% Similarity=0.188 Sum_probs=39.6
Q ss_pred cccCCHHHHHHHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhCCCChhH
Q psy11027 11 LNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGV 90 (252)
Q Consensus 11 L~s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~d~d~~V 90 (252)
+.++++.++..|.+.++ ++ .+.+++.++++.||..|+-.+ | .+.+..+++|+|+.|
T Consensus 59 l~d~~~~VR~~AA~~l~----~~-------~l~~L~~D~~~~VR~~aA~~L-------~------~~~L~~ll~D~d~~V 114 (244)
T 1lrv_A 59 LADPFWERRAIAVRYSP----VE-------ALTPLIRDSDEVVRRAVAYRL-------P------REQLSALMFDEDREV 114 (244)
T ss_dssp TTCSSHHHHHHHHTTSC----GG-------GGGGGTTCSSHHHHHHHHTTS-------C------SGGGGGTTTCSCHHH
T ss_pred hcCCCHHHHHHHHHhCC----HH-------HHHHHccCcCHHHHHHHHHHC-------C------HHHHHHHHcCCCHHH
Confidence 46778888887777542 11 245666777777877777531 1 134556667777777
Q ss_pred HHHHHHH
Q psy11027 91 QSAAVNV 97 (252)
Q Consensus 91 ~~~al~l 97 (252)
..++..-
T Consensus 115 R~~aA~~ 121 (244)
T 1lrv_A 115 RITVADR 121 (244)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7666554
No 130
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=60.99 E-value=33 Score=32.97 Aligned_cols=94 Identities=16% Similarity=0.137 Sum_probs=63.4
Q ss_pred HHHhcccCCHHHHHHHHHHhhc---------CCchH----hHHHHHHHHHHhhc-CCChHHHHHHHHHHHHHHhhCCCCc
Q psy11027 7 IRKDLNAQNQYDAGLALSALAC---------FTSTD----LARDLANDIMMLLT-STKPYLRKKAVLMMYKVFLKFPDAL 72 (252)
Q Consensus 7 i~kDL~s~n~~~~~LAL~~la~---------i~~~e----l~~~l~~~V~~lL~-s~~p~VRKkA~lal~ki~~~~Pd~l 72 (252)
+..=|+++++....-+|..+.+ +..++ ....+...+.+.+. +++..+||+|.-++.+++++.|+--
T Consensus 322 l~~lL~~~~~~~~~kGL~Ll~~ll~~l~~~sl~~~~ld~~~~~~~~q~L~~v~~~~P~~~lR~~a~~vl~~~I~~~~~e~ 401 (596)
T 4f52_E 322 IEVFLQRTEESVISKGLELLENSLLRIEDNSLLYQYLEIKSFLTVPQGLVKVMTLCPIETLRKKSLAMLQLYINKLDSQG 401 (596)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHHHHSSCTTCBCGGGGGSHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHBCHHH
T ss_pred HHHHHcCCchHHHHhHHHHHHHHHHhccCccCChhhhchhhHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHhCChHH
Confidence 4444666666655555554421 22222 23345566666654 6899999999999999999999642
Q ss_pred CchhHHHHhhhC-CCChhHHHHHHHHHHHHH
Q psy11027 73 RPAFPRLKEKLE-DPDSGVQSAAVNVVCELA 102 (252)
Q Consensus 73 ~~~~~~l~~lL~-d~d~~V~~~al~ll~ei~ 102 (252)
=+.-++.+|+ +.++|+.+.++..+-+-.
T Consensus 402 --R~~iL~~LL~~~~~~~v~~~lI~~~KdeI 430 (596)
T 4f52_E 402 --KYTLFRCLLNTSNHSGVEAFIIQNIKNQI 430 (596)
T ss_dssp --HHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 2455667776 489999999999997644
No 131
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=59.36 E-value=39 Score=27.74 Aligned_cols=55 Identities=16% Similarity=0.241 Sum_probs=37.8
Q ss_pred chHHHHHhcccCCHHHHHHHHHHhhc------------CCchHhHHHHHHHHHHhhc-CCChHHHHHHHHHH
Q psy11027 3 TTNMIRKDLNAQNQYDAGLALSALAC------------FTSTDLARDLANDIMMLLT-STKPYLRKKAVLMM 61 (252)
Q Consensus 3 ~~N~i~kDL~s~n~~~~~LAL~~la~------------i~~~el~~~l~~~V~~lL~-s~~p~VRKkA~lal 61 (252)
++-.|+|=|+++||.++-+||+.+-. +++.+ +.+++.++++ .+++.||+|+.--+
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~----fl~~l~~l~~~~~~~~Vk~kil~li 110 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKE----NCEMFSSFLESTPHENVRQKMLELV 110 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHH----HHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHH----HHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 35678899999999999999987732 33344 4444455554 35678888876444
No 132
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=58.87 E-value=10 Score=35.57 Aligned_cols=56 Identities=20% Similarity=0.175 Sum_probs=43.6
Q ss_pred cCCHHHHHHHHHHhhcCC-----chHhHHH--HHHHHHHhhcCCChHHHHHHHHHHHHHHhhC
Q psy11027 13 AQNQYDAGLALSALACFT-----STDLARD--LANDIMMLLTSTKPYLRKKAVLMMYKVFLKF 68 (252)
Q Consensus 13 s~n~~~~~LAL~~la~i~-----~~el~~~--l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~ 68 (252)
|++|.+.|.|..=+|.+. +..+++. .-..|+++|+|+++-||+-|..|+-++...+
T Consensus 416 s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~~ 478 (480)
T 1ho8_A 416 KQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGYT 478 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHHS
T ss_pred CCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 457889999988887754 3444444 3477899999999999999999999887543
No 133
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=58.36 E-value=13 Score=31.07 Aligned_cols=88 Identities=8% Similarity=-0.095 Sum_probs=60.6
Q ss_pred hcCCchHhHHHHH-----------HHHHHhhcCCChHHHHHHHH----HHHHHHhhCCC--CcCchhHHHHhhhCCCChh
Q psy11027 27 ACFTSTDLARDLA-----------NDIMMLLTSTKPYLRKKAVL----MMYKVFLKFPD--ALRPAFPRLKEKLEDPDSG 89 (252)
Q Consensus 27 a~i~~~el~~~l~-----------~~V~~lL~s~~p~VRKkA~l----al~ki~~~~Pd--~l~~~~~~l~~lL~d~d~~ 89 (252)
..+.+.++++.++ +.+.+.+.|++.++|+.|+. -+.....+.++ -...+.+.+...+.|++..
T Consensus 87 ~~~~nWd~~D~~~~~l~~~~~~~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~ 166 (235)
T 1t06_A 87 DGAYFYMLSDYVVAVTLSESNIAQDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPER 166 (235)
T ss_dssp HTCCSHHHHHHTHHHHHTTSSSHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHH
T ss_pred hCCCcHHHHHHHHHHHHhcCchHHHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHH
Confidence 3455566655442 34567778899999999998 33442223222 2234567777788899999
Q ss_pred HHHHHHHHHHHHHhhCchhhhhhHH
Q psy11027 90 VQSAAVNVVCELARKNPKNYLSLAP 114 (252)
Q Consensus 90 V~~~al~ll~ei~~~~p~~~~~l~p 114 (252)
|-.+.--.+.++..++|+.....+-
T Consensus 167 v~kAi~W~Lr~~gk~~~~~~~~al~ 191 (235)
T 1t06_A 167 TKSAMNNFLNTVAISYVPLHEKAVE 191 (235)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 9999999999999999975544433
No 134
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=55.72 E-value=36 Score=26.61 Aligned_cols=61 Identities=15% Similarity=0.224 Sum_probs=38.3
Q ss_pred chHHHHHhcc-cCCHHHHHHHHHHhh----cCCc---hHhH-HHHHHH-HHHhhcC---CChHHHHHHHHHHHH
Q psy11027 3 TTNMIRKDLN-AQNQYDAGLALSALA----CFTS---TDLA-RDLAND-IMMLLTS---TKPYLRKKAVLMMYK 63 (252)
Q Consensus 3 ~~N~i~kDL~-s~n~~~~~LAL~~la----~i~~---~el~-~~l~~~-V~~lL~s---~~p~VRKkA~lal~k 63 (252)
++-.|+|=++ ++|+.++-+||+.+- |-|. .+++ +++.++ +.++++. +...||+|+.-.+..
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~ 127 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQS 127 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHH
Confidence 3457888898 589999999998872 2221 2222 235555 4566642 345799888665543
No 135
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=55.62 E-value=20 Score=36.56 Aligned_cols=89 Identities=19% Similarity=0.172 Sum_probs=65.9
Q ss_pred chHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhh----CCCChhHHHHHHHHHH--HH---
Q psy11027 31 STDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKL----EDPDSGVQSAAVNVVC--EL--- 101 (252)
Q Consensus 31 ~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL----~d~d~~V~~~al~ll~--ei--- 101 (252)
-.++-..+..++.++-.|.-+-||+.|--++..+.+..|..-...+|.+.+.| .+.|+.-+-.|+.++. .+
T Consensus 127 ~t~l~~~ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~ 206 (997)
T 1vsy_5 127 ASKLENLLLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRK 206 (997)
T ss_dssp CCSHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHH
T ss_pred CChHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhH
Confidence 45566778999999999999999999999999999999876665555555544 4778999999988765 33
Q ss_pred HhhCchhhhhhHHHHHHH
Q psy11027 102 ARKNPKNYLSLAPVFFKL 119 (252)
Q Consensus 102 ~~~~p~~~~~l~p~l~~l 119 (252)
+..+++....++|.+++.
T Consensus 207 ~~~d~~~~~~~~~ali~~ 224 (997)
T 1vsy_5 207 LMTDYKDIGRLIFLLIEC 224 (997)
T ss_dssp GGGCHHHHHHHHHHHHHT
T ss_pred HhcChHHHHHHHHHHHHh
Confidence 334444455566666554
No 136
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=51.60 E-value=11 Score=38.52 Aligned_cols=117 Identities=9% Similarity=0.091 Sum_probs=72.8
Q ss_pred hHHHHHhcc-cCCHHHHHHHHHHhhc-------CCchHhHHHHHHHHHHhhcCCC-hHHHHHHHHHHHHHHhhC-C-CCc
Q psy11027 4 TNMIRKDLN-AQNQYDAGLALSALAC-------FTSTDLARDLANDIMMLLTSTK-PYLRKKAVLMMYKVFLKF-P-DAL 72 (252)
Q Consensus 4 ~N~i~kDL~-s~n~~~~~LAL~~la~-------i~~~el~~~l~~~V~~lL~s~~-p~VRKkA~lal~ki~~~~-P-d~l 72 (252)
++.+.+-.+ |++- .+..+|.++-. +-+++--..+..-|.++|.++. .-||..|+.++.-+.+.. | ...
T Consensus 803 l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~ 881 (997)
T 1vsy_5 803 VDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPL 881 (997)
T ss_dssp HHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHH
T ss_pred HHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhH
Confidence 344444444 4566 77777777532 1123333567888899999999 999999999999998887 6 333
Q ss_pred CchhHHHHhhhCC------------CChhHHHHHHHHHHHHHhhCchhh--hhhHHHHHHHhh
Q psy11027 73 RPAFPRLKEKLED------------PDSGVQSAAVNVVCELARKNPKNY--LSLAPVFFKLMT 121 (252)
Q Consensus 73 ~~~~~~l~~lL~d------------~d~~V~~~al~ll~ei~~~~p~~~--~~l~p~l~~lL~ 121 (252)
...+..+.+.+.. ++.....+|+-.++.+....|=.. -+.+|.++..|.
T Consensus 882 ~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La 944 (997)
T 1vsy_5 882 LSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLS 944 (997)
T ss_dssp HHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHH
Confidence 3444444444421 111455677777777777666322 345666655554
No 137
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=50.44 E-value=78 Score=32.69 Aligned_cols=91 Identities=13% Similarity=0.144 Sum_probs=61.0
Q ss_pred ccCCHHHHHHHHHHhhcC-------CchHhHHHHHHHHHHhhcC-------CChHHHHHHHHHHHHHHhh-CCCCcCchh
Q psy11027 12 NAQNQYDAGLALSALACF-------TSTDLARDLANDIMMLLTS-------TKPYLRKKAVLMMYKVFLK-FPDALRPAF 76 (252)
Q Consensus 12 ~s~n~~~~~LAL~~la~i-------~~~el~~~l~~~V~~lL~s-------~~p~VRKkA~lal~ki~~~-~Pd~l~~~~ 76 (252)
.+.++.++-.|+..+-+. -.+|--+.+-..+.+.+.+ ..++||.|.+.++..+++. .|+-=+.++
T Consensus 57 ~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll 136 (1204)
T 3a6p_A 57 KTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDML 136 (1204)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHH
Confidence 456889999998777542 1344444455566666542 4699999999999998876 476656667
Q ss_pred HHHHhhhCCCChhHHHHHHHHHHHHHh
Q psy11027 77 PRLKEKLEDPDSGVQSAAVNVVCELAR 103 (252)
Q Consensus 77 ~~l~~lL~d~d~~V~~~al~ll~ei~~ 103 (252)
+.+.++++. ++...-.++.++..+++
T Consensus 137 ~~L~~~~~~-~~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 137 IELDTLSKQ-GETQTELVMFILLRLAE 162 (1204)
T ss_dssp HHHHHHHHT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence 777777755 45545556666666554
No 138
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=46.89 E-value=1.3e+02 Score=29.31 Aligned_cols=99 Identities=15% Similarity=0.133 Sum_probs=61.8
Q ss_pred chHHHHHhcccCCHHHHHHHHHHhhcCCchHhHHHHHHHHHHhhcCC-ChHHHHHHHHHHHH-HHhhCCCCc--CchhHH
Q psy11027 3 TTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTST-KPYLRKKAVLMMYK-VFLKFPDAL--RPAFPR 78 (252)
Q Consensus 3 ~~N~i~kDL~s~n~~~~~LAL~~la~i~~~el~~~l~~~V~~lL~s~-~p~VRKkA~lal~k-i~~~~Pd~l--~~~~~~ 78 (252)
+.+.+.+-|++++..+++.|-.++.-+..++-...+..-+-.+|.+- +-..=...++-++. ++...++.. +...|+
T Consensus 300 Vv~aVL~GL~D~DDDVRAVAAetLiPIA~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPR 379 (800)
T 3oc3_A 300 LCRKLVSLLSSPDEDIKLLSAELLCHFPITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKD 379 (800)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHTTSCCSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGG
T ss_pred HHHHHHhhcCCcccHHHHHHHHHhhhhcchhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHHH
Confidence 35667777888888888888888877777666666776666666541 11111233333332 232222211 245688
Q ss_pred HHhhhCCCChhHHHHHHHHHHHH
Q psy11027 79 LKEKLEDPDSGVQSAAVNVVCEL 101 (252)
Q Consensus 79 l~~lL~d~d~~V~~~al~ll~ei 101 (252)
+...|.++=++|..+++..+..+
T Consensus 380 L~PFLRHtITSVR~AVL~TL~tf 402 (800)
T 3oc3_A 380 IFPCFTSPVPEVRTSILNMVKNL 402 (800)
T ss_dssp TGGGGTCSSHHHHHHHHHHTTTC
T ss_pred HHhhhcCCcHHHHHHHHHHHHHH
Confidence 88888888888888887766554
No 139
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=45.86 E-value=1.6e+02 Score=26.13 Aligned_cols=104 Identities=15% Similarity=0.156 Sum_probs=70.8
Q ss_pred cccCCHHHHHHHHHHhhcCCch-----HhH--HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcC----------
Q psy11027 11 LNAQNQYDAGLALSALACFTST-----DLA--RDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALR---------- 73 (252)
Q Consensus 11 L~s~n~~~~~LAL~~la~i~~~-----el~--~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~---------- 73 (252)
..+......+-||+++.++-.- .+. ..+...+..++++..+.|=|.|.--+..+...++....
T Consensus 169 i~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~ 248 (339)
T 3dad_A 169 GAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVA 248 (339)
T ss_dssp HTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhh
Confidence 3456778899999999887654 443 35777888888887777766655444444444432221
Q ss_pred -----chhHHHHhhhC---CCChhHHHHHHHHHHHHHhhCch--hhhhhHH
Q psy11027 74 -----PAFPRLKEKLE---DPDSGVQSAAVNVVCELARKNPK--NYLSLAP 114 (252)
Q Consensus 74 -----~~~~~l~~lL~---d~d~~V~~~al~ll~ei~~~~p~--~~~~l~p 114 (252)
..|+.+.+.|. ..|.-+...|++++..+...-|+ .|.+++.
T Consensus 249 ~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~apd~d~~~di~d 299 (339)
T 3dad_A 249 STTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALPDQDSFYDVTD 299 (339)
T ss_dssp HHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred hccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHHH
Confidence 12667788886 57889999999999998887663 3555443
No 140
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=38.06 E-value=50 Score=32.20 Aligned_cols=97 Identities=16% Similarity=0.230 Sum_probs=59.7
Q ss_pred HHHHhcccCCHHHHH---HHHHHhhcCCchHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhh
Q psy11027 6 MIRKDLNAQNQYDAG---LALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEK 82 (252)
Q Consensus 6 ~i~kDL~s~n~~~~~---LAL~~la~i~~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~l 82 (252)
.+.+++..+.-.++= ++|+-+..+-.. .+.+.+.+...|.+++.-||-.|+.++.-+. .|+.+....+.+.+.
T Consensus 267 qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~--Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA--~p~~l~~LL~iLWd~ 342 (800)
T 3oc3_A 267 QLVGFLDSGDWQVQFSGLIALGYLKEFVED--KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP--ITDSLDLVLEKCWKN 342 (800)
T ss_dssp HHTTGGGCSCHHHHHHHHHHHHHTGGGCCC--HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC--CSSTHHHHHHHHHHH
T ss_pred HHHhhcCCCCeeehhhhHHHHHHHHHHHHH--HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc--chhhHHHHHHHHHHH
Confidence 344556666666654 555555222211 4678889999999999999999999998777 666665444444444
Q ss_pred hCC-CChhH-HHHHHHHHHHHHhhCc
Q psy11027 83 LED-PDSGV-QSAAVNVVCELARKNP 106 (252)
Q Consensus 83 L~d-~d~~V-~~~al~ll~ei~~~~p 106 (252)
|.+ .|.+. .++...++..++...+
T Consensus 343 L~~LDDLSASTgSVMdLLAkL~s~p~ 368 (800)
T 3oc3_A 343 IESEELISVSKTSNLSLLTKIYRENP 368 (800)
T ss_dssp HHTCCSCCTTHHHHHHHHHHHHHHCT
T ss_pred hhhhcccchhhHHHHHHHHHHHcCCc
Confidence 433 22222 2444566777776543
No 141
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=32.99 E-value=1.6e+02 Score=24.02 Aligned_cols=87 Identities=14% Similarity=0.260 Sum_probs=55.0
Q ss_pred HHHhhcCC--chHhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchhHHHHhhhCCCChhHHHHHHHHHHH
Q psy11027 23 LSALACFT--STDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCE 100 (252)
Q Consensus 23 L~~la~i~--~~el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~~~l~~lL~d~d~~V~~~al~ll~e 100 (252)
|..++... .++++..+...+.+++. +..++++...|+=.+++.+++.... ....+--+++..+++
T Consensus 115 Lh~mC~~~pld~eLc~~l~~qL~~L~~------------~~~~ll~~l~dl~Sp~l~h~RN~yq-~i~q~Fqi~lk~Ltd 181 (204)
T 2jqq_A 115 LHEMCGIEPLEEEICSGLIEQLYKLIT------------ASRRILESCADSNSPYIHHLRNDYQ-DLLQEFQISLKILTE 181 (204)
T ss_dssp HHHHHTSSCCCHHHHHHHHHHHHHHHH------------HHHHHHHHHCSCCCHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHHHH------------HHHHHHHHHHhcCcHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 45555553 46666666666665553 4455666666655555555444321 122344577888888
Q ss_pred HHhhCchhhhhhHHHHHHHhhc
Q psy11027 101 LARKNPKNYLSLAPVFFKLMTT 122 (252)
Q Consensus 101 i~~~~p~~~~~l~p~l~~lL~~ 122 (252)
=|-.+|..|..+...++.++.+
T Consensus 182 kClE~p~~~~~ls~tLv~il~~ 203 (204)
T 2jqq_A 182 KCLENPSSLQNLSLTLVSIIKT 203 (204)
T ss_dssp HHHHCTTTTHHHHHHHHHHCCC
T ss_pred HHhcCCccchhHHHHHHHHHhc
Confidence 8888899999999888888753
No 142
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=30.15 E-value=83 Score=27.74 Aligned_cols=115 Identities=12% Similarity=0.124 Sum_probs=60.6
Q ss_pred HHHHHHHHhhcCC-----chHhHH---HHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCc-------hh----HH
Q psy11027 18 DAGLALSALACFT-----STDLAR---DLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRP-------AF----PR 78 (252)
Q Consensus 18 ~~~LAL~~la~i~-----~~el~~---~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~-------~~----~~ 78 (252)
..-.||-.+--+. +..+++ .+...+. +..+..+.+|.+|+-.+..+.|.+|+.+.. +. +.
T Consensus 44 ~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~ 122 (315)
T 3qml_C 44 RLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAA 122 (315)
T ss_dssp HHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHH
Confidence 4455666664443 233443 1222233 223467789999999999999999987762 22 23
Q ss_pred HHhhhCC---CChhHHHHHHHHHHHHHhhCchhhhh-hHHHHHHHhhcCCChh--HHHHHhhc
Q psy11027 79 LKEKLED---PDSGVQSAAVNVVCELARKNPKNYLS-LAPVFFKLMTTSSNNW--MLIKIIKL 135 (252)
Q Consensus 79 l~~lL~d---~d~~V~~~al~ll~ei~~~~p~~~~~-l~p~l~~lL~~~~~pw--lqikiLkl 135 (252)
+.++... ..-.++..-++.+.++.+. |..|.. =.-.+.+++.. ...| .|+|++.+
T Consensus 123 L~~~~~~~~~~~~~l~KR~LsII~~L~~~-~~~F~~~~m~~L~~ly~~-~~~d~~~k~Kvl~l 183 (315)
T 3qml_C 123 LSNLNDSNHRSSNILIKRYLSILNELPVT-SEDLPIYSTVVLQNVYER-NNKDKQLQIKVLEL 183 (315)
T ss_dssp HHHHHCC--CCCHHHHHHHHHHHHHSCCC-STTC--CCHHHHHHHHHH-TTTCHHHHHHHHHH
T ss_pred HHHHhhcccchhHHHHHHHHHHHHHHhcC-hHhhhhccHHHHHHHHcc-CCCCHHHHHHHHHH
Confidence 3333322 2224555557777777654 333321 11334444432 2225 45555555
No 143
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=29.26 E-value=1.1e+02 Score=28.00 Aligned_cols=82 Identities=12% Similarity=0.123 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHH-----HHHHhhCCCCcC-chhHHHHhhhC-CCChhHHHHHHHHHHHHHhhCch
Q psy11027 35 ARDLANDIMMLLTSTKPYLRKKAVLMM-----YKVFLKFPDALR-PAFPRLKEKLE-DPDSGVQSAAVNVVCELARKNPK 107 (252)
Q Consensus 35 ~~~l~~~V~~lL~s~~p~VRKkA~lal-----~ki~~~~Pd~l~-~~~~~l~~lL~-d~d~~V~~~al~ll~ei~~~~p~ 107 (252)
...+...+.++++|++..|=-+|..-. ..++..+++.+- -.++.+.+-.. +=|..|...|.+++.-+.+.+|+
T Consensus 291 ~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~~ 370 (403)
T 3fga_B 291 MEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQK 370 (403)
T ss_dssp HHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhCHH
Confidence 445778888888998887777654332 344455554333 34566655443 34889999999999998888898
Q ss_pred hhhhhHHHH
Q psy11027 108 NYLSLAPVF 116 (252)
Q Consensus 108 ~~~~l~p~l 116 (252)
.|..+....
T Consensus 371 lF~~~~~~~ 379 (403)
T 3fga_B 371 LFDDCTQQF 379 (403)
T ss_dssp CCCTTHHHH
T ss_pred HHHHHHHHH
Confidence 887766543
No 144
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=28.91 E-value=1.9e+02 Score=28.62 Aligned_cols=86 Identities=12% Similarity=0.048 Sum_probs=64.7
Q ss_pred HhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCC---CCcCc-hhHHHHhhhCC---CChhHHHHHHHHHHHHHhh-
Q psy11027 33 DLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFP---DALRP-AFPRLKEKLED---PDSGVQSAAVNVVCELARK- 104 (252)
Q Consensus 33 el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~P---d~l~~-~~~~l~~lL~d---~d~~V~~~al~ll~ei~~~- 104 (252)
++++.+.+-+...+-|.+..+..-+.-|+..+-...| +++-+ ..+++..-|+. ..+.=+.+++..+..+++.
T Consensus 335 ~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~l 414 (799)
T 1vsy_4 335 EIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFI 414 (799)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHH
Confidence 3455566677777788899999999999999999888 87754 56899988877 6788888899988888763
Q ss_pred -CchhhhhhHHHHHH
Q psy11027 105 -NPKNYLSLAPVFFK 118 (252)
Q Consensus 105 -~p~~~~~l~p~l~~ 118 (252)
..+.|+..++.+..
T Consensus 415 v~~~~yr~hl~~lL~ 429 (799)
T 1vsy_4 415 VMDKLYRVHITNVLS 429 (799)
T ss_dssp TTSTTGGGHHHHHHH
T ss_pred hcCcccHHHHHHHHH
Confidence 23356655554444
No 145
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=28.84 E-value=94 Score=27.67 Aligned_cols=66 Identities=17% Similarity=0.111 Sum_probs=52.0
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcCchh-----HHHHhhhCCCChhHHHHHHHHHHHHHhh
Q psy11027 39 ANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAF-----PRLKEKLEDPDSGVQSAAVNVVCELARK 104 (252)
Q Consensus 39 ~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~~~~-----~~l~~lL~d~d~~V~~~al~ll~ei~~~ 104 (252)
+.++.+-|.+++.-.+|+|...+.++|..+++.+.+|+ ..+.+...+.+.-..+=++..+.++..+
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~ 190 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLF 190 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhc
Confidence 34455556677788899999999999999999988765 4566677788888888888888888653
No 146
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=27.48 E-value=3.2e+02 Score=24.72 Aligned_cols=74 Identities=7% Similarity=-0.125 Sum_probs=56.0
Q ss_pred HHHHHhcccCCHHHHHHHHHHhhcCC--------chHhHHHHHHHHHHhh-cCCChHHHHHHHHHHHHHHhhCCCCcCch
Q psy11027 5 NMIRKDLNAQNQYDAGLALSALACFT--------STDLARDLANDIMMLL-TSTKPYLRKKAVLMMYKVFLKFPDALRPA 75 (252)
Q Consensus 5 N~i~kDL~s~n~~~~~LAL~~la~i~--------~~el~~~l~~~V~~lL-~s~~p~VRKkA~lal~ki~~~~Pd~l~~~ 75 (252)
+.+-+=++|+|..+.--||....|=. ...+.+.+.+.+.+.. +|-++-||..|+-++--+...+|++....
T Consensus 296 ~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~~lF~~~ 375 (403)
T 3fga_B 296 RQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDC 375 (403)
T ss_dssp HHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHTTSCCCCCTT
T ss_pred HHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 34556678999999988998876622 3445556777777765 46799999999999988889999998875
Q ss_pred hHH
Q psy11027 76 FPR 78 (252)
Q Consensus 76 ~~~ 78 (252)
...
T Consensus 376 ~~~ 378 (403)
T 3fga_B 376 TQQ 378 (403)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 147
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=26.77 E-value=1e+02 Score=32.46 Aligned_cols=87 Identities=14% Similarity=0.045 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCCcC-chhHHHHhhhCCCChhHHHHHHHHHHHHHhhCchhhhhhH
Q psy11027 35 ARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALR-PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLA 113 (252)
Q Consensus 35 ~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd~l~-~~~~~l~~lL~d~d~~V~~~al~ll~ei~~~~p~~~~~l~ 113 (252)
.+.+..-...++.+.++.|+--|...-..+|..+-+... .....+..-.++.+.+-+.+|+.++.+++..+|+..+...
T Consensus 398 f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~~~l~~~a 477 (1323)
T 3s4w_B 398 CPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDTYCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLNASAMRLNA 477 (1323)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHTH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCHHHHhHHH
Confidence 334444445667788999999999998888988733222 2334555555667777788899999999999988665555
Q ss_pred HHHHHHhh
Q psy11027 114 PVFFKLMT 121 (252)
Q Consensus 114 p~l~~lL~ 121 (252)
..+-.+|.
T Consensus 478 ~~l~giLD 485 (1323)
T 3s4w_B 478 AFVKGILD 485 (1323)
T ss_dssp HHHHGGGG
T ss_pred HHHHHHHH
Confidence 54444443
No 148
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=25.78 E-value=2.1e+02 Score=29.34 Aligned_cols=111 Identities=11% Similarity=0.054 Sum_probs=72.9
Q ss_pred HHhcccCCHHHHHHHHHHhhcCC-chHhHHHHHHHHHHhhc-CCChHHHHHHHHHHHHHHhhCCCCcCc-----hhHHHH
Q psy11027 8 RKDLNAQNQYDAGLALSALACFT-STDLARDLANDIMMLLT-STKPYLRKKAVLMMYKVFLKFPDALRP-----AFPRLK 80 (252)
Q Consensus 8 ~kDL~s~n~~~~~LAL~~la~i~-~~el~~~l~~~V~~lL~-s~~p~VRKkA~lal~ki~~~~Pd~l~~-----~~~~l~ 80 (252)
.+-+-++++..+.-|-..+..+. +|+-.. .... ++. +.++++|--|+..+-+..++.=..++. .-+.+.
T Consensus 34 v~~ly~p~~~~r~qA~~~L~q~q~sp~aw~-~~~~---iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~Ll 109 (1073)
T 3gjx_A 34 VNCLYHGEGAQQRMAQEVLTHLKEHPDAWT-RVDT---ILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVV 109 (1073)
T ss_dssp HHTTTCSSHHHHHHHHHHHHTSSCCSCHHH-HHTC---C---CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHcCchHHH-HHHH---HhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHHHH
Confidence 34455677778899999998888 454433 3333 333 468999999999998888765333331 123333
Q ss_pred hhh----CC-----CChhHHHHHHHHHHHHHhh-CchhhhhhHHHHHHHhhc
Q psy11027 81 EKL----ED-----PDSGVQSAAVNVVCELARK-NPKNYLSLAPVFFKLMTT 122 (252)
Q Consensus 81 ~lL----~d-----~d~~V~~~al~ll~ei~~~-~p~~~~~l~p~l~~lL~~ 122 (252)
+.+ .+ .++.++.....++.+++++ .|+.|..+.+.+++.+.+
T Consensus 110 ~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~ 161 (1073)
T 3gjx_A 110 GLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRT 161 (1073)
T ss_dssp HHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCC
Confidence 333 22 3577775556677777765 588999999999988764
No 149
>2jby_A M11L protein; apoptosis; 2.41A {Myxoma virus} PDB: 2jbx_A 2o42_A
Probab=23.72 E-value=82 Score=24.03 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=23.4
Q ss_pred HHHHhhhCCCChhHHHHHHHHHHHHHhh
Q psy11027 77 PRLKEKLEDPDSGVQSAAVNVVCELARK 104 (252)
Q Consensus 77 ~~l~~lL~d~d~~V~~~al~ll~ei~~~ 104 (252)
+.+.-.|+|..|+|..|+++++..+.++
T Consensus 79 n~l~~~l~D~rPSVkLAtisLLSiIIkK 106 (145)
T 2jby_A 79 NTLTFALRDASPSVKLATLTLLASVIKK 106 (145)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 4455577899999999999999998865
No 150
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=23.23 E-value=1.3e+02 Score=23.12 Aligned_cols=38 Identities=16% Similarity=0.273 Sum_probs=23.5
Q ss_pred HhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCC
Q psy11027 33 DLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPD 70 (252)
Q Consensus 33 el~~~l~~~V~~lL~s~~p~VRKkA~lal~ki~~~~Pd 70 (252)
+.++++.+.+.+-|.+.+++++-||.-.+-.+.++-++
T Consensus 45 ~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~ 82 (140)
T 1vdy_A 45 SIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGS 82 (140)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCH
T ss_pred hHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCH
Confidence 44556666666666666666666666666666555443
Done!