RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11027
(252 letters)
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis,
clathrin adaptor, transport, coated PITS; 4.0A {Mus
musculus} SCOP: i.23.1.1
Length = 618
Score = 143 bits (362), Expect = 1e-39
Identities = 49/208 (23%), Positives = 96/208 (46%), Gaps = 32/208 (15%)
Query: 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLM 60
+L TN I+ DLN Q+ GLAL L C S+++ RDLA ++ LL ++ YLRKKA L
Sbjct: 106 LLMTNCIKNDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALC 165
Query: 61 MYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNP---KNYLSLAPVFF 117
V K P+ + P K L + + GV +V ++ E+ ++P ++ L P
Sbjct: 166 AVHVIRKVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLV 225
Query: 118 KLM--------------TTSSNNWMLIKIIKLRLQGVFAVNVVCELARKNPKNYLSLAPV 163
+++ + S+ ++ ++I++L + L R + + ++ +
Sbjct: 226 RILKNLIMSGYSPEHDVSGISDPFLQVRILRL----------LRILGRNDDDSSEAMNDI 275
Query: 164 FFKLMTTSS-----NNWMLIKIIKLVLY 186
++ T + N +L + + ++
Sbjct: 276 LAQVATNTETSKNVGNAILYETVLTIMD 303
Score = 64.5 bits (157), Expect = 4e-12
Identities = 30/228 (13%), Positives = 76/228 (33%), Gaps = 24/228 (10%)
Query: 14 QNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALR 73
+N L T + + + I+ L ++++A+ + + L + +R
Sbjct: 327 KNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFA--LVNGNNIR 384
Query: 74 PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKII 133
L L+ + ++ + + A K + +++TT+ +
Sbjct: 385 GMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGS-------- 436
Query: 134 KLRLQGVFAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLVLYAVLYAAA 193
AV + +L + + + +K + + ++ AA
Sbjct: 437 ---YVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQ-----------PLVQVAA 482
Query: 194 WICGEFREHLDSPRATLEAMTRRGLSLLPGHIQAVYVQNMLKILARIL 241
W GE+ + L S + E + + +++V + NM + R
Sbjct: 483 WCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGY 530
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative
splicing, endocytosis, lipid-binding, golgi apparatus,
adaptor, membrane, transport; HET: IHP; 2.59A {Homo
sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B
1w63_B
Length = 591
Score = 129 bits (327), Expect = 1e-34
Identities = 44/251 (17%), Positives = 92/251 (36%), Gaps = 35/251 (13%)
Query: 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLM 60
++ N KD N LA+ + C + L + L PY+RK A +
Sbjct: 85 IMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVC 144
Query: 61 MYKVFLKFPDALRPA--FPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY-LSLAPVFF 117
+ K+ + L++ + D + V + AV + E++ +P + L L P
Sbjct: 145 VAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNI 204
Query: 118 KLMTTS---SNNWMLIKIIKLRLQGVFAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNN 174
+ T+ W I I+ + K+ + S+ ++ +++
Sbjct: 205 NKLLTALNECTEWGQIFILDC----------LSNYNPKDDREAQSICERVTPRLSHANS- 253
Query: 175 WMLIKIIKLVLYAVLYAAAWICGEF----REHLDSPRATLEAMTRRGLSLLPGH--IQAV 228
AV+ +A + +F + D L+ + ++LL G +Q V
Sbjct: 254 ------------AVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYV 301
Query: 229 YVQNMLKILAR 239
++N+ I+ +
Sbjct: 302 ALRNINLIVQK 312
Score = 54.8 bits (132), Expect = 8e-09
Identities = 30/161 (18%), Positives = 53/161 (32%), Gaps = 24/161 (14%)
Query: 79 LKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLRLQ 138
LKE + D AV + A K ++ L+ T N
Sbjct: 358 LKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVN-----------YV 406
Query: 139 GVFAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLVLYAVLYAAAWICGE 198
A+ V+ ++ RK P Y S+ + + + A WI GE
Sbjct: 407 VQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEP------------DARAAMIWIVGE 454
Query: 199 FREHLDSPRATLEAMTRRGLSLLPGHIQAVYVQNMLKILAR 239
+ E +D+ LE+ G +Q + ++K+ +
Sbjct: 455 YAERIDNADELLESF-LEGFHDESTQVQLTLLTAIVKLFLK 494
Score = 36.6 bits (85), Expect = 0.006
Identities = 16/102 (15%), Positives = 37/102 (36%)
Query: 21 LALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLK 80
L + S + ++ T +KAV + + +K + L
Sbjct: 337 EKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLL 396
Query: 81 EKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTT 122
+ ++ + V A+ V+ ++ RK P Y S+ + + +
Sbjct: 397 DLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDS 438
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle,
alternative splicing, endocytosis, lipid-binding, golgi
apparatus, adaptor, membrane, transport; HET: IHP; 2.59A
{Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Length = 621
Score = 124 bits (312), Expect = 1e-32
Identities = 38/155 (24%), Positives = 75/155 (48%), Gaps = 20/155 (12%)
Query: 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTS--TKPYLRKKAV 58
L N I+ DL ++N GLAL +A S ++A A +I +L + T +++ A
Sbjct: 110 RLINNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAA 169
Query: 59 LMMYKVFLKFPDALRPA--FPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAP-- 114
L + +++ PD + R+ L D GV +AA +++ LA+KNP+ + +
Sbjct: 170 LCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLA 229
Query: 115 --VFFKLMTTSSNN------------WMLIKIIKL 135
+++T++S + W+ +K+++L
Sbjct: 230 VSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRL 264
Score = 57.6 bits (139), Expect = 9e-10
Identities = 34/241 (14%), Positives = 73/241 (30%), Gaps = 33/241 (13%)
Query: 21 LALSALACFTSTDLARDLAND-----IMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPA 75
LAL ++ S++ + + I L T +R++AV ++Y + +
Sbjct: 348 LALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYA--MCDRSNAQQI 405
Query: 76 FPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKL 135
+ LE D ++ V V LA K +Y L+ + +
Sbjct: 406 VAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGD---------- 455
Query: 136 RLQGVFAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLVLYAVLYAAAWI 195
V ++ A F+ + + + L+K +I
Sbjct: 456 -YVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQAPACHENLVK-----------VGGYI 503
Query: 196 CGEFREHLDSPRAT----LEAMTRRGLSLLPGHIQAVYVQNMLKILARILDSAESRDDAI 251
GEF + + + L +A+ + +K + + + D +
Sbjct: 504 LGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPEVKATIQDVL 563
Query: 252 E 252
Sbjct: 564 R 564
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane,
protein transport-prote binding complex; HET: GNP; 2.90A
{Bos taurus}
Length = 355
Score = 106 bits (265), Expect = 4e-27
Identities = 19/173 (10%), Positives = 57/173 (32%), Gaps = 11/173 (6%)
Query: 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLM 60
++ T+ + KD+ + G A+ AL T + + + + + + P + A++
Sbjct: 103 IIVTSSLTKDMTGKEDSYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVS 162
Query: 61 MYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM 120
+ D ++ +E + VQ A+ ++ + + + + F +
Sbjct: 163 SLHLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLAVSKMISKFTR-- 220
Query: 121 TTSSNNWMLIKIIKLRLQGVFAVNVVCELARKNPKNYLSLAPVFFKLMTTSSN 173
+ + +I++ +L ++ L +
Sbjct: 221 HGLKSPFAYCMMIRV---------ASRQLEDEDGSRDSPLFDFIESCLRNKHE 264
Score = 26.6 bits (58), Expect = 8.7
Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 12 NAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDA 71
+ Y+A A+ L ++ +LA + + + +S K LR AV + KV +K P A
Sbjct: 263 HEMVVYEAASAIVNLPGCSAKELAP-AVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSA 321
Query: 72 LRPAFPRLKEKLEDPDSGVQSAAVNVVCELA 102
+ L+ + D + + + A+ + +
Sbjct: 322 VTACNLDLENLVTDANRSIATLAITTLLKTG 352
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure,
structural genomics; 2.20A {Pyrococcus horikoshii}
Length = 253
Score = 67.8 bits (165), Expect = 1e-13
Identities = 33/182 (18%), Positives = 63/182 (34%), Gaps = 15/182 (8%)
Query: 75 AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIK 134
+L E L+D V A++++ +A+ Y + F L+ S + +I K
Sbjct: 33 VLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAK 92
Query: 135 LRLQGVFAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNN--WMLIKIIKLVLYAVLYAA 192
++A++ P+ S+ PV F + ++ + A
Sbjct: 93 A----------FGQMAKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLM 142
Query: 193 AWICGEFREHLDSPRATLEAMTRRGLSLLPGHIQAVYVQNMLKILARILDSAES--RDDA 250
A I +F L S + + + G YV L + +L + R A
Sbjct: 143 ASIVRDFMSMLSSKNREDKLTALNFIEAM-GENSFKYVNPFLPRIINLLHDGDEIVRASA 201
Query: 251 IE 252
+E
Sbjct: 202 VE 203
Score = 52.8 bits (126), Expect = 1e-08
Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 2/104 (1%)
Query: 6 MIRKDLNAQNQYDAGLALSALA--CFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYK 63
++ + ++ AL + L + D M +L+S + A+ +
Sbjct: 111 VLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEA 170
Query: 64 VFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK 107
+ + P PR+ L D D V+++AV + LA N K
Sbjct: 171 MGENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDK 214
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.3 bits (117), Expect = 6e-07
Identities = 38/286 (13%), Positives = 79/286 (27%), Gaps = 102/286 (35%)
Query: 3 TTNMIRKDLNAQNQYDAGLAL---------SALACFTSTDLARDLANDIMMLLT---STK 50
T +++ +N A + SAL F + + ++ + +T
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSNSAL--FRA---VGEGNAQLVAIFGGQGNTD 167
Query: 51 PY---LRKKAVLMMYKVFLKFPDAL-RPAFPRLKEKLEDPDSG--VQSAAVNVVCELARK 104
Y LR +Y+ + L + + L E + V + +N++ L
Sbjct: 168 DYFEELRD-----LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 105 N---PKNYLSLAPVFFKLMTTSSNNWMLIKIIKLRLQGVFAVN--VVCELARKNPKNYLS 159
+ K+YL P+ L I + +Q + V +L P
Sbjct: 223 SNTPDKDYLLSIPISCPL-------------IGV-IQ---LAHYVVTAKLLGFTPGE--- 262
Query: 160 LAPVFFKLMTTSSNNWMLIKIIKLVLYAVLYAAA------------------WICGEFRE 201
+ ++ + ++ AV A +I G R
Sbjct: 263 ----LRSYLKGATG------HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI-G-VRC 310
Query: 202 HLDSPRATLEA----------------MTR-RGLSL--LPGHIQAV 228
+ P +L M L+ + ++
Sbjct: 311 YEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT 356
Score = 37.7 bits (87), Expect = 0.003
Identities = 27/178 (15%), Positives = 47/178 (26%), Gaps = 74/178 (41%)
Query: 1 MLTTNM-IRKDLNAQ-----NQYDAGLAL---SALAC----FTSTDLARDLANDIMMLLT 47
+ +DL ++ + AG +L +ALA + L ++
Sbjct: 1736 LTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVE--------VV- 1786
Query: 48 STKPYLR----KKAV------LMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQ--SAAV 95
+ R + AV Y + A+ P E V+
Sbjct: 1787 ----FYRGMTMQVAVPRDELGRSNYGMI-----AINPGRVAASFSQEALQYVVERVGKRT 1837
Query: 96 NVVCELARKNPKNY------------------LSLAPVFFKLMTTSSNNWMLIKIIKL 135
+ E+ NY ++ F KL I II+L
Sbjct: 1838 GWLVEIV-----NYNVENQQYVAAGDLRALDTVTNVLNFIKLQK--------IDIIEL 1882
Score = 34.6 bits (79), Expect = 0.033
Identities = 35/240 (14%), Positives = 67/240 (27%), Gaps = 101/240 (42%)
Query: 29 FTSTDLARDLANDIMMLLTSTK-PYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLED-- 85
F+ D+ + ++ + K +R+ M+++ + F + E
Sbjct: 1659 FSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT 1718
Query: 86 --PDSGV-------QSA--AVNVVC-ELARKN---PKNYL----SL---------APVFF 117
+ G+ Q A + E + P + SL A V
Sbjct: 1719 FRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADV-- 1776
Query: 118 KLMTTSSNNWMLIKIIKLR---LQ-------------GVFAVN---------------VV 146
M+ S L++++ R +Q G+ A+N VV
Sbjct: 1777 --MSIES----LVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVV 1830
Query: 147 CELARKNPK-----NY------------------LSLAPVFFKLMTTSSNNWMLIKIIKL 183
+ ++ NY ++ F KL I II+L
Sbjct: 1831 ERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQK--------IDIIEL 1882
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.8 bits (97), Expect = 2e-04
Identities = 45/292 (15%), Positives = 79/292 (27%), Gaps = 74/292 (25%)
Query: 4 TNMIRKDLNAQNQYDAGLALSALACFTSTDLAR----------DLANDIMMLLTSTKPYL 53
+ +DL + LS +A LA L I L +P
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 54 RKKAVLMMYKVFLKFP-DALRPA--FPRL--KEKLEDPDSGVQSAAVNVVCELAR----- 103
+K M+ FP A P + D VV +L +
Sbjct: 371 YRK----MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV--------VVNKLHKYSLVE 418
Query: 104 KNPKNY-LSLAPVFFKLMTTSSNNWML-IKII---------------KLRLQGVFAVNVV 146
K PK +S+ ++ +L N + L I+ L F ++
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
Query: 147 CELARKNPKNYLSLAP-VFFKLMTTSSNNWMLIKIIKLVLYAVLYAAAWICGE------- 198
L ++L VF ++ KI + AW
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDF------RFLEQKIRHD-------STAWNASGSILNTLQ 525
Query: 199 ----FREHLDSPRATLEAMTRRGLSLLPGHIQAVYVQNMLKILARILDSAES 246
++ ++ E + L LP + + +L L + +
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDE 577
Score = 37.9 bits (87), Expect = 0.003
Identities = 35/209 (16%), Positives = 67/209 (32%), Gaps = 67/209 (32%)
Query: 37 DLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSA--- 93
D +++I + + S + LR+ L+ K + + L L L + VQ+A
Sbjct: 218 DHSSNIKLRIHSIQAELRR---LLKSK---PYENCL------LV--LLN----VQNAKAW 259
Query: 94 -AVNVVCEL---AR-KNPKNYLSLAPV-------FFKLMTTSSN-----NWMLIKIIKLR 136
A N+ C++ R K ++LS A +T ++ + L
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 137 LQGV----FAVNVVCELARKNP---KNYLSLAPVFFKLMTTSSNNWMLIKIIKLVL---- 185
+ + ++++ E R N+ + N L II+ L
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHV------------NCDKLTTIIESSLNVLE 367
Query: 186 ---YAVLYAAAWICGEFREHLDSPRATLE 211
Y ++ F P L
Sbjct: 368 PAEYRKMF---DRLSVFPPSAHIPTILLS 393
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule,
XMAP215, STU2, DIS1, microtubule associated protein,
structural protein; 1.90A {Caenorhabditis elegans}
Length = 266
Score = 34.0 bits (77), Expect = 0.031
Identities = 11/86 (12%), Positives = 28/86 (32%), Gaps = 3/86 (3%)
Query: 21 LALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDA---LRPAFP 77
+ + + ++ L S R + +L++ +
Sbjct: 151 SVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKSLSVEK 210
Query: 78 RLKEKLEDPDSGVQSAAVNVVCELAR 103
+ + D D V++AA+NV+ +
Sbjct: 211 TVAPFVGDKDVNVRNAAINVLVACFK 236
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine
acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Length = 507
Score = 34.1 bits (77), Expect = 0.036
Identities = 30/215 (13%), Positives = 72/215 (33%), Gaps = 26/215 (12%)
Query: 43 MMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELA 102
++ ++ A + K F FP+ A + ED D ++ A+ + + A
Sbjct: 34 ILDGVKGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFA 93
Query: 103 RKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLRLQGVFAVNVVCELARKNPKNYLSLAP 162
+N +A + +L+ T + + N + + + + K L
Sbjct: 94 T--GENLPRVADILTQLLQTDDS-----------AEFNLVNNALLSIFKMDAKGTLG--- 137
Query: 163 VFFKLMTTSSNNWMLIKIIKLVLYAVLY---------AAAWICGEFREHLDSPRATLEAM 213
F + + + + IK + + I E ++ L+ +
Sbjct: 138 GLFSQILQGE-DIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTGEEFVL 196
Query: 214 TRRGLSLLPGHIQAVYVQNMLKILARILDSAESRD 248
+ LS L Q +++++A D ++ +
Sbjct: 197 FMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFN 231
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger,
ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Length = 1230
Score = 34.3 bits (77), Expect = 0.038
Identities = 34/229 (14%), Positives = 72/229 (31%), Gaps = 26/229 (11%)
Query: 40 NDIMMLLTSTKPYLRKKAV-----LMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAA 94
++++ +TS+ R A + D+ R + + LED + VQ+ A
Sbjct: 9 SNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLA 68
Query: 95 VNVVCELARKNPKNYLS-LAPVFFKLMTTSSNNWMLIKIIKLRLQGVFAVNVVCELARKN 153
V + L K + + + M + I I L+ V+ EL +
Sbjct: 69 VKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLK-------TVIGELPPAS 121
Query: 154 PKNYLS------LAPVFFKLMTTSSNN-------WMLIKIIKLVLYAVLYAAAWICGEFR 200
+ L+ + + + ++ ++ ++ I
Sbjct: 122 SGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLL 181
Query: 201 EHLDSPRATLEAMTRRGLSLLPGHIQAVYVQNMLKILARILDSAESRDD 249
L SPR + T L L + ++++ L L +S
Sbjct: 182 PQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMST 230
Score = 27.4 bits (59), Expect = 5.7
Identities = 12/107 (11%), Positives = 31/107 (28%), Gaps = 6/107 (5%)
Query: 2 LTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMM 61
+ + D N + + D ++D +R+ A +
Sbjct: 300 ICLKYLTYDPNYNYDDEDEDENAMD--ADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCL 357
Query: 62 YKVFLKFPDALRP----AFPRLKEKLEDPDSGVQSAAVNVVCELARK 104
V + L P L + ++ + V++ + L ++
Sbjct: 358 DAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQ 404
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat,
micro plus END, +TIP, protein binding; 2.10A {Drosophila
melanogaster}
Length = 242
Score = 31.9 bits (72), Expect = 0.13
Identities = 16/102 (15%), Positives = 37/102 (36%), Gaps = 9/102 (8%)
Query: 9 KDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKF 68
K+ A+ A+ TS + I+ L++ P ++ + L + + +
Sbjct: 108 KEKKPNVVTALREAIDAIYASTSLE---AQQESIVESLSNKNPSVKSETALFIARALTRT 164
Query: 69 ------PDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARK 104
L+ L + L +PD V+ ++ + L +
Sbjct: 165 QPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206
Score = 26.9 bits (59), Expect = 6.5
Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 11/95 (11%)
Query: 70 DALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK----NYLSLAPVFFKLMTTSSN 125
D L +KLE+ ++ ++ V+ +L +PK Y +L K++T SN
Sbjct: 11 DILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSN 70
Query: 126 NWMLIKIIKLRLQGVFAVNVVCELARKNPKNYLSL 160
+ L + ++ + K NY S
Sbjct: 71 -------VVLVAMAGKCLALLAKGLAKRFSNYASA 98
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein,
unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Length = 240
Score = 31.8 bits (71), Expect = 0.16
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 42 IMMLLTSTKPYLRKKAV--LMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVC 99
I L S+ + R+ A L ++ F + A R+ + ED V+ + N +
Sbjct: 144 IDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALR 203
Query: 100 ELARKNP 106
++++K P
Sbjct: 204 DISKKFP 210
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.10A {Escherichia coli} SCOP:
a.118.1.16
Length = 280
Score = 31.7 bits (72), Expect = 0.21
Identities = 13/91 (14%), Positives = 26/91 (28%), Gaps = 2/91 (2%)
Query: 7 IRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIM--MLLTSTKPYLRKKAVLMMYKV 64
+ + +N + L D +I+ M L +R A+ +
Sbjct: 59 AIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQR 118
Query: 65 FLKFPDALRPAFPRLKEKLEDPDSGVQSAAV 95
K P + + D + V+ A
Sbjct: 119 CKKNPIYSPKIVEQSQITAFDKSTNVRRATA 149
Score = 27.8 bits (62), Expect = 3.3
Identities = 13/80 (16%), Positives = 22/80 (27%), Gaps = 8/80 (10%)
Query: 22 ALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKE 81
A++ L N LL +R A + D E
Sbjct: 148 TAFAISVINDKATIPLLIN----LLKDPNGDVRNWAAFAININKYDNSDIR----DCFVE 199
Query: 82 KLEDPDSGVQSAAVNVVCEL 101
L+D + V+ A+ +
Sbjct: 200 MLQDKNEEVRIEAIIGLSYR 219
Score = 27.1 bits (60), Expect = 5.4
Identities = 10/93 (10%), Positives = 24/93 (25%), Gaps = 7/93 (7%)
Query: 24 SALACFTSTDLARDLANDIMM-LLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEK 82
A + + + L +D + LL R + +V A E
Sbjct: 9 KASKEYGLYNQCKKLNDDELFRLLDDHNSLKRISSA----RVLQLRGGQ--DAVRLAIEF 62
Query: 83 LEDPDSGVQSAAVNVVCELARKNPKNYLSLAPV 115
D + + ++ ++ +
Sbjct: 63 CSDKNYIRRDIGAFILGQIKICKKCEDNVFNIL 95
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein,
phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP:
a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A*
3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A
3c5w_A
Length = 588
Score = 31.1 bits (70), Expect = 0.34
Identities = 24/135 (17%), Positives = 47/135 (34%), Gaps = 16/135 (11%)
Query: 22 ALSALACFTS----TDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAF- 76
+S L C L++ L I+ L K +R + M + +
Sbjct: 383 IISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKL 442
Query: 77 -PRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL--SLAPVFFKLMTTSSNNWMLIKII 133
L D ++ AA + + +L K K + ++ P + N++
Sbjct: 443 NSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMS--GDPNYL----- 495
Query: 134 KLRLQGVFAVNVVCE 148
R+ +F +NV+ E
Sbjct: 496 -HRMTTLFCINVLSE 509
Score = 30.8 bits (69), Expect = 0.45
Identities = 18/107 (16%), Positives = 34/107 (31%), Gaps = 4/107 (3%)
Query: 22 ALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKV--FLKFPDALRPAFPRL 79
S S+ + +L L + P +R+ A + + L+ + P
Sbjct: 149 LFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMF 208
Query: 80 KEKLEDPDSGVQSAAVNVVCELARKNPKNYLS--LAPVFFKLMTTSS 124
D V+ AV +A+ P+ L + P + S
Sbjct: 209 SNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKS 255
Score = 28.4 bits (63), Expect = 2.5
Identities = 10/85 (11%), Positives = 30/85 (35%), Gaps = 3/85 (3%)
Query: 22 ALSALA-CFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAF--PR 78
++ L+ + + ++ + +R + K+ ++ + P
Sbjct: 503 CINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPI 562
Query: 79 LKEKLEDPDSGVQSAAVNVVCELAR 103
L++ +D D V+ A + L+
Sbjct: 563 LEKLTQDQDVDVKYFAQEALTVLSL 587
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.40
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 8/28 (28%)
Query: 79 LKEKLED------PDSGVQSAAVNVVCE 100
LK KL+ DS + A+ E
Sbjct: 22 LK-KLQASLKLYADDSA-PALAIKATME 47
Score = 29.1 bits (64), Expect = 0.71
Identities = 10/45 (22%), Positives = 14/45 (31%), Gaps = 17/45 (37%)
Query: 40 NDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLE 84
+ L S K Y A D+ PA +K +E
Sbjct: 20 QALKKLQASLKLY----A-----------DDS-APALA-IKATME 47
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton,
microtubule, tubul domain, hydrolase; HET: GTP; 2.88A
{Saccharomyces cerevisiae}
Length = 278
Score = 29.7 bits (66), Expect = 0.77
Identities = 21/126 (16%), Positives = 47/126 (37%), Gaps = 8/126 (6%)
Query: 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMM-LLTSTKPYLRKKAVL 59
T ++ K L + ++S + D + + ++++ P L A
Sbjct: 102 TWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAAN 161
Query: 60 MMYKVFLKF---PDALRPAFPRLKEKL----EDPDSGVQSAAVNVVCELARKNPKNYLSL 112
+Y++ F ++ P L + + D V+S +N++ E+ + N L
Sbjct: 162 CVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLL 221
Query: 113 APVFFK 118
+ FK
Sbjct: 222 EEILFK 227
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding;
HET: 1PE 12P; 2.15A {Synthetic}
Length = 211
Score = 28.9 bits (65), Expect = 1.1
Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 10/80 (12%)
Query: 22 ALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKE 81
A AL L L ++R+ A + + ++ A L +
Sbjct: 70 AADALGQIGDERAVEPLIK----ALKDEDGWVRQSAAVALGQI------GDERAVEPLIK 119
Query: 82 KLEDPDSGVQSAAVNVVCEL 101
L+D D V+ AA + E+
Sbjct: 120 ALKDEDWFVRIAAAFALGEI 139
Score = 28.9 bits (65), Expect = 1.4
Identities = 16/94 (17%), Positives = 37/94 (39%), Gaps = 13/94 (13%)
Query: 9 KDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKF 68
KD + + A +AL + + + ++ L ++R A + + +
Sbjct: 91 KDEDGWVRQSAAVALGQIGDERAVEP-------LIKALKDEDWFVRIAAAFALGE--IGD 141
Query: 69 PDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELA 102
A+ L + L+D D V+ +A + + E+
Sbjct: 142 ERAV----EPLIKALKDEDGWVRQSAADALGEIG 171
Score = 27.3 bits (61), Expect = 4.3
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 6/51 (11%)
Query: 45 LLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAV 95
L Y+R+ A K D A L + L+D D+ V+ AA
Sbjct: 27 NLQDDSYYVRRAAA----YALGKIGDE--RAVEPLIKALKDEDAWVRRAAA 71
Score = 26.6 bits (59), Expect = 6.7
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 16/63 (25%)
Query: 45 LLTSTKPYLRKKAVLMMYKVFLKFPDAL-----RPAFPRLKEKLEDPDSGVQSAAVNVVC 99
L ++R+ A DAL A L + L+D D V+ +A +
Sbjct: 58 ALKDEDAWVRRAAA-----------DALGQIGDERAVEPLIKALKDEDGWVRQSAAVALG 106
Query: 100 ELA 102
++
Sbjct: 107 QIG 109
>1e6y_B Methyl-coenzyme M reductase I beta subunit; biological
methanogenesis, NI-enzyme, oxidoreductase, NI ENZ; HET:
MHS AGM F43 TP7; 1.6A {Methanosarcina barkeri} SCOP:
a.89.1.1 d.58.31.2
Length = 433
Score = 29.5 bits (66), Expect = 1.1
Identities = 18/106 (16%), Positives = 45/106 (42%), Gaps = 4/106 (3%)
Query: 55 KKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAP 114
K AV Y + + + E +++ N V ++ +N N +L+
Sbjct: 153 KSAVWGSYPQTMDLMGGQVQGILSIPQNNEGLGFSLRNIMANHVAAISNRNAMNASALSS 212
Query: 115 VFFKL----MTTSSNNWMLIKIIKLRLQGVFAVNVVCELARKNPKN 156
++ + M + + +++ L QG+ A N++ ++ ++N K+
Sbjct: 213 IYEQSGIFEMGGAVGMFERHQLLGLAYQGLNANNLLYDIVKENGKD 258
>1hbn_B Methyl-coenzyme M reductase I beta subunit; methanogenesis,
biological methanogenesis, NI-enzyme, oxidoreductase;
HET: MHS AGM MGN F43 TP7; 1.16A
{Methanothermobacterthermautotrophicus} SCOP: a.89.1.1
d.58.31.2 PDB: 1hbm_B* 1hbo_B* 1hbu_B* 1mro_B* 3m1v_B*
3m2r_B* 3m2u_B* 3m2v_B* 3m30_B* 3m32_B* 3pot_B* 1e6v_B*
Length = 442
Score = 29.5 bits (66), Expect = 1.1
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Query: 55 KKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAP 114
K AVL Y +++ A + +KLE P +++ VN V KN +L+
Sbjct: 156 KAAVLGRYPQSVEYMGANIATMLDIPQKLEGPGYALRNIMVNHVVAATLKNTLQAAALST 215
Query: 115 VFFKL----MTTSSNNWMLIKIIKLRLQGVFAVNVVCELARKNPKN 156
+ + M + + + ++ L QG+ A N+V +L + N K
Sbjct: 216 ILEQTAMFEMGDAVGAFERMHLLGLAYQGMNADNLVFDLVKANGKE 261
>3sqg_B Methyl-coenzyme M reductase, beta subunit; anaerobic methane
oxidation, transferase; HET: MHS 0AF TP7 M43 1PE PGE
P6G; 2.10A {Uncultured archaeon}
Length = 433
Score = 29.5 bits (66), Expect = 1.2
Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 4/106 (3%)
Query: 55 KKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAP 114
V MY D + K E P +++ VN + RK L
Sbjct: 152 HAGVWGMYPQNPDPGDGAVKMLVDIPMKNEGPGFTLRNIPVNHLAATVRKRAMQGAGLTM 211
Query: 115 VFFKL----MTTSSNNWMLIKIIKLRLQGVFAVNVVCELARKNPKN 156
+ + M ++ L +G+ A N++ L + N ++
Sbjct: 212 ILEEAAQFEMGNCMGPHERGHLLDLAYEGLNANNLLYSLIKDNGQD 257
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding;
1.80A {Synthetic}
Length = 201
Score = 28.4 bits (64), Expect = 1.7
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 45 LLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCEL 101
L ++R+ A + + ++ A L + L+D D V+ AA + E+
Sbjct: 84 ALKDEDGWVRQSAAVALGQI------GDERAVEPLIKALKDEDWFVRIAAAFALGEI 134
Score = 28.4 bits (64), Expect = 1.9
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Query: 45 LLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELA 102
L ++R A + + + A+ L + L+D D V+ +A + + E+
Sbjct: 115 ALKDEDWFVRIAAAFALGE--IGDERAV----EPLIKALKDEDGWVRQSAADALGEIG 166
Score = 26.9 bits (60), Expect = 4.9
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 6/51 (11%)
Query: 45 LLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAV 95
L Y+R+ A K D A L + L+D D+ V+ AA
Sbjct: 22 NLQDDSYYVRRAAA----YALGKIGDE--RAVEPLIKALKDEDAWVRRAAA 66
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo
sapiens} PDB: 3odr_A 3ods_A 3o2q_A* 3o2s_A
Length = 386
Score = 28.6 bits (63), Expect = 1.8
Identities = 12/76 (15%), Positives = 26/76 (34%)
Query: 26 LACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLED 85
L L + ++I+ +RK + + + + + L L L D
Sbjct: 52 LIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRD 111
Query: 86 PDSGVQSAAVNVVCEL 101
+ V A+ + +L
Sbjct: 112 ENVNVVKKAILTMTQL 127
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum,
structural proteomics, heat-like repeat; NMR
{Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Length = 131
Score = 27.6 bits (62), Expect = 1.9
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 15/61 (24%)
Query: 45 LLTSTKPYLRKKAVLMMYKVFLKFPDALR----PAFPRLKEKLEDPDSGVQSAAVNVVCE 100
+ ++R+ AL AF L E L + D ++ AA ++
Sbjct: 20 HMADENKWVRRDVS-----------TALSRMGDEAFEPLLESLSNEDWRIRGAAAWIIGN 68
Query: 101 L 101
Sbjct: 69 F 69
Score = 26.9 bits (60), Expect = 3.9
Identities = 11/56 (19%), Positives = 17/56 (30%), Gaps = 16/56 (28%)
Query: 45 LLTSTKPYLRKKAVLMMYKVFLKFPDAL-----RPAFPRLKEKLEDPDSGVQSAAV 95
L++ +R A + A L + LED V+S A
Sbjct: 50 SLSNEDWRIRGAAA-----------WIIGNFQDERAVEPLIKLLEDDSGFVRSGAA 94
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone;
2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Length = 296
Score = 28.4 bits (63), Expect = 2.0
Identities = 19/100 (19%), Positives = 31/100 (31%), Gaps = 13/100 (13%)
Query: 22 ALSALACFT-STDLARDLAN------DIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRP 74
AL LA + D A D + L + LR +A ++
Sbjct: 60 ALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQ 119
Query: 75 -----AFPRLKEKLE-DPDSGVQSAAVNVVCELARKNPKN 108
A +L L+ D V+ A+ + L R+
Sbjct: 120 VLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAG 159
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop,
transcription, protein binding; 2.40A {Drosophila
melanogaster}
Length = 257
Score = 28.1 bits (62), Expect = 2.9
Identities = 11/76 (14%), Positives = 26/76 (34%)
Query: 26 LACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLED 85
+ +LA + ++ L + +RK+ V + +V + L + L D
Sbjct: 42 TVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRD 101
Query: 86 PDSGVQSAAVNVVCEL 101
+ V + +
Sbjct: 102 NSAQVIKRVIQACGSI 117
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase,
nucleus, phosphoprotein, PR proteasome, threonine
protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Length = 997
Score = 27.8 bits (61), Expect = 4.9
Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 13 AQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDAL 72
A + + + + L + ++ L L DI+ L TS P + K A + + +
Sbjct: 110 ANSLHQSRVLLHST-NRKASKLENLLLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSY 168
Query: 73 RPAFPRLKEKLED 85
++ LE
Sbjct: 169 GVVINKIIPSLEK 181
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Length = 233
Score = 26.8 bits (59), Expect = 6.6
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 77 PRLKEKLEDPDSGVQSAAVNVVCELARKNPKN 108
+L + L+ + VQ A + L ++ N
Sbjct: 55 LKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN 86
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL
protein transport, transport, cytoplasm, GTPase
activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
PDB: 2l1l_B
Length = 1049
Score = 27.2 bits (59), Expect = 6.9
Identities = 19/125 (15%), Positives = 42/125 (33%), Gaps = 12/125 (9%)
Query: 2 LTTNMIRKDLNAQNQYDAGLALSALACFTSTD----LARDLANDIMMLLTSTKPYLRKKA 57
L + + + N A+ +++ S D + D++ L + K
Sbjct: 456 LARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAV 515
Query: 58 VLMMY--------KVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY 109
V + + LR +L E + + GVQ A + ++ +K ++
Sbjct: 516 VASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHF 575
Query: 110 LSLAP 114
+ P
Sbjct: 576 VIQQP 580
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats,
cell adhesion-CE complex; 3.01A {Homo sapiens}
Length = 458
Score = 26.8 bits (59), Expect = 7.0
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 75 AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKN 108
L + L+ + S A + L+ +NPK+
Sbjct: 380 CLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKD 413
>3grl_A General vesicular transport factor P115; vesicle transport,
membrane trafficking, membrane tethering, fusion, snare,
RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB:
3gq2_A 2w3c_A
Length = 651
Score = 27.0 bits (59), Expect = 7.0
Identities = 12/72 (16%), Positives = 28/72 (38%), Gaps = 7/72 (9%)
Query: 42 IMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAF-------PRLKEKLEDPDSGVQSAA 94
++ LL ++R V ++ + + ++ RL + L D +++
Sbjct: 127 LLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDG 186
Query: 95 VNVVCELARKNP 106
V ++ L R N
Sbjct: 187 VLLLQALTRSNG 198
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator,
alternative splicing, cell adhesion, cytoplasm,
cytoskeleton, disease mutation, nucleus; 2.20A {Homo
sapiens}
Length = 644
Score = 26.8 bits (59), Expect = 7.9
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 77 PRLKEKLEDPDSGVQSAAVNVVCELARKNPKN 108
P L + L D D V + A +V +L++K
Sbjct: 17 PELTKLLNDEDQVVVNKAAVMVHQLSKKEASR 48
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats,
hypothetical, unknown function; 2.20A {Thermococcus
onnurineus}
Length = 265
Score = 26.3 bits (57), Expect = 8.6
Identities = 23/176 (13%), Positives = 62/176 (35%), Gaps = 16/176 (9%)
Query: 75 AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLA-----PVFFKLMTTSSNNWML 129
A + E + D + A + E+ ++ + + VF ++ +
Sbjct: 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENE---- 89
Query: 130 IKIIKLRLQGVFAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLVLYAVL 189
K+ ++ + A+ + + K +L A L+ S ++ M I+ I ++
Sbjct: 90 ----KVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLL-ESPDDMMRIETIDVLSKLQP 144
Query: 190 YAAAWICGEF--REHLDSPRATLEAMTRRGLSLLPGHIQAVYVQNMLKILARILDS 243
+ + + + T A L++L + ++ +L + +L +
Sbjct: 145 LEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQN 200
>1dpg_A G6PD, glucose 6-phosphate dehydrogenase; oxidoreductase, NADP/NAD,
glucose metabolism, oxidoreductase (CHOH(D) - NAD(P));
2.00A {Leuconostoc mesenteroides} SCOP: c.2.1.3 d.81.1.5
PDB: 1e7y_A* 1e7m_A* 1h93_A 1h94_A* 1h9a_A* 1e77_A*
1h9b_A 2dpg_A*
Length = 485
Score = 26.7 bits (60), Expect = 9.0
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 10/43 (23%)
Query: 75 AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFF 117
++ LKE +E+ N + Y+S+AP FF
Sbjct: 91 SYAVLKEAIEEAADKFDIDG-NRIF---------YMSVAPRFF 123
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.135 0.391
Gapped
Lambda K H
0.267 0.0509 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,775,893
Number of extensions: 219159
Number of successful extensions: 655
Number of sequences better than 10.0: 1
Number of HSP's gapped: 627
Number of HSP's successfully gapped: 82
Length of query: 252
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 161
Effective length of database: 4,160,982
Effective search space: 669918102
Effective search space used: 669918102
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.9 bits)