RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11027
(252 letters)
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 107 bits (268), Expect = 3e-27
Identities = 51/254 (20%), Positives = 101/254 (39%), Gaps = 19/254 (7%)
Query: 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDI--MMLLTSTKPYLRKKAV 58
L N I+ DL ++N GLAL +A S ++A A +I +++ T +++ A
Sbjct: 102 RLINNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAA 161
Query: 59 LMMYKVFLKFPDALRPA--FPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVF 116
L + +++ PD + R+ L D GV +AA +++ LA+KNP+ + + +
Sbjct: 162 LCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLA 221
Query: 117 ---FKLMTTSSNNWMLIKIIKLRLQGVFAVNVVCELARKNPKNYLSLAPVFFKLMTTSSN 173
+ TS++ + +V ++ L P ++ + + T N
Sbjct: 222 VSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILN 281
Query: 174 NWMLIKIIKLVL-----YAVLYAAAWICGEFREHLDSPRATLEAMTRRGLSLLPGH---I 225
K V AVL+ A + H DS L + L +
Sbjct: 282 KAQEPPKSKKVQHSNAKNAVLFEAISLII----HHDSEPNLLVRACNQLGQFLQHRETNL 337
Query: 226 QAVYVQNMLKILAR 239
+ + +++M + +
Sbjct: 338 RYLALESMCTLASS 351
Score = 52.1 bits (124), Expect = 2e-08
Identities = 30/204 (14%), Positives = 63/204 (30%), Gaps = 29/204 (14%)
Query: 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTD-----LARDLANDIMMLLTSTKPYLRK 55
+ N + + L + LAL ++ S++ + + I L T +R+
Sbjct: 320 VRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQ 379
Query: 56 KAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPV 115
+AV ++Y + + + LE D ++ V V LA K +Y
Sbjct: 380 RAVDLLYA--MCDRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDT 437
Query: 116 FFKLMTTSSNNWMLIKIIKLRLQGVFAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNW 175
L+ + + V ++ A F+ + + +
Sbjct: 438 ILNLIRIAGDY-----------VSEEVWYRVIQIVINRDDVQGYAAKTVFEALQAPACH- 485
Query: 176 MLIKIIKLVLYAVLYAAAWICGEF 199
++ +I GEF
Sbjct: 486 ----------ENLVKVGGYILGEF 499
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
{Human (Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 100 bits (249), Expect = 1e-24
Identities = 41/247 (16%), Positives = 87/247 (35%), Gaps = 27/247 (10%)
Query: 1 MLTTNMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLM 60
++ N KD N LA+ + C + L + L PY+RK A +
Sbjct: 82 IMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVC 141
Query: 61 MYKVFLKFPDALRPA--FPRLKEKLEDPDSGVQSAAVNVVCELARKNP-KNYLSLAPVFF 117
+ K+ + L++ + D + V + AV + E++ +P N L L P
Sbjct: 142 VAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNI 201
Query: 118 KLMTTS---SNNWMLIKIIKLRLQGVFAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNN 174
+ T+ W I I+ + K+ + S+ ++ +++
Sbjct: 202 NKLLTALNECTEWGQIFILDC----------LSNYNPKDDREAQSICERVTPRLSHANSA 251
Query: 175 WMLIKIIKLVLYAVLYAAAWICGEFREHLDSPRATLEAMTRRGLSLL--PGHIQAVYVQN 232
V+ + + + D L+ + ++LL +Q V ++N
Sbjct: 252 ---------VVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRN 302
Query: 233 MLKILAR 239
+ I+ +
Sbjct: 303 INLIVQK 309
Score = 51.3 bits (122), Expect = 3e-08
Identities = 35/231 (15%), Positives = 68/231 (29%), Gaps = 29/231 (12%)
Query: 11 LNAQNQYDAGLALSALACFTSTD--LARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKF 68
L + +AL + + + + +K +M+ L
Sbjct: 288 LLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIR---LAS 344
Query: 69 PDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWM 128
+ LKE + D AV + A K ++ L+ T N
Sbjct: 345 QANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNY-- 402
Query: 129 LIKIIKLRLQGVFAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLVLYAV 188
A+ V+ ++ RK P Y S+ + + +
Sbjct: 403 ---------VVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEP------------DA 441
Query: 189 LYAAAWICGEFREHLDSPRATLEAMTRRGLSLLPGHIQAVYVQNMLKILAR 239
A WI GE+ E +D+ LE+ +Q + ++K+ +
Sbjct: 442 RAAMIWIVGEYAERIDNADELLESFLEG-FHDESTQVQLTLLTAIVKLFLK 491
Score = 40.5 bits (94), Expect = 1e-04
Identities = 34/169 (20%), Positives = 59/169 (34%), Gaps = 18/169 (10%)
Query: 21 LALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLK 80
L L A + D+A N + P +R AV M ++ L+
Sbjct: 68 LYLMNYA-KSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGC--IRVDKITEYLCEPLR 124
Query: 81 EKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVF-FKLMTTSSNNWMLIKIIKLRLQG 139
+ L+D D V+ A V +L N + + + + SN ++
Sbjct: 125 KCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVA--------- 175
Query: 140 VFAVNVVCELARKNP-KNYLSLAPVFFKLMTTS---SNNWMLIKIIKLV 184
AV + E++ +P N L L P + T+ W I I+ +
Sbjct: 176 -NAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCL 223
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein
1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}
Length = 1207
Score = 33.9 bits (76), Expect = 0.016
Identities = 34/227 (14%), Positives = 66/227 (29%), Gaps = 28/227 (12%)
Query: 46 LTSTKPYLRKKAVLMMYKVFLKF-----PDALRPAFPRLKEKLEDPDSGVQSAAVNVVCE 100
+TS+ R A + K D+ R + + LED + VQ+ AV +
Sbjct: 12 MTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGP 71
Query: 101 LARKNPKNYL-SLAPVFFKLMTTSSNNWMLIKIIKLRLQGVFAVNVVCELARKNPKNYLS 159
L K + + ++ M + +LR + V
Sbjct: 72 LVSKVKEYQVETIVDTLCTNMLSDKE--------QLRDISSIGLKTVIGELPPASSGSAL 123
Query: 160 LAPVFFKLMTTSSNNW--------------MLIKIIKLVLYAVLYAAAWICGEFREHLDS 205
A V K+ ++ ++ ++ ++ I L S
Sbjct: 124 AANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTS 183
Query: 206 PRATLEAMTRRGLSLLPGHIQAVYVQNMLKILARILDSAESRDDAIE 252
PR + T L L + ++++ L L +S
Sbjct: 184 PRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRT 230
Score = 32.8 bits (73), Expect = 0.047
Identities = 25/125 (20%), Positives = 40/125 (32%), Gaps = 11/125 (8%)
Query: 10 DLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLL----TSTKPYLRKKAVLMMYKVF 65
+ QY +L + S + +I LL + R + K+
Sbjct: 897 TSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLT 956
Query: 66 LKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL----SLAPVFFKLMT 121
L P+ L PRLK L S +S+ V V +P+ + F K +
Sbjct: 957 LIDPETL---LPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLE 1013
Query: 122 TSSNN 126
N
Sbjct: 1014 DPDLN 1018
Score = 32.4 bits (72), Expect = 0.062
Identities = 20/103 (19%), Positives = 27/103 (26%), Gaps = 8/103 (7%)
Query: 9 KDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLKF 68
+ + L L L L L S Y R V +
Sbjct: 938 ECAEEGTRNVVAECLGKLTLIDPETLLPRLKG----YLISGSSYARSSVVTAVKFTISDH 993
Query: 69 PDA----LRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK 107
P L+ + LEDPD V+ A+ A P
Sbjct: 994 PQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPS 1036
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein
phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 588
Score = 31.7 bits (70), Expect = 0.089
Identities = 12/97 (12%), Positives = 34/97 (35%), Gaps = 3/97 (3%)
Query: 9 KDLNAQNQYDAGLALSALA-CFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKVFLK 67
D N ++ ++ L+ + + ++ + +R + K+
Sbjct: 490 GDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPI 549
Query: 68 FPDALRPAF--PRLKEKLEDPDSGVQSAAVNVVCELA 102
++ + P L++ +D D V+ A + L+
Sbjct: 550 LDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId:
9606]}
Length = 529
Score = 29.1 bits (63), Expect = 0.63
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 75 AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKN 108
A P L + L D D V + A +V +L++K
Sbjct: 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR 51
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId:
9606]}
Length = 458
Score = 26.3 bits (56), Expect = 4.0
Identities = 27/138 (19%), Positives = 47/138 (34%), Gaps = 14/138 (10%)
Query: 37 DLANDIMMLLTSTKPYLRKKAVLMMYKVFLKFPDALRPA-FPRLKEKLEDPDSGVQSAAV 95
K A + + + D + P P +KE +++PD + AAV
Sbjct: 327 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAV 386
Query: 96 NVVCELARKNPKNYLS-----LAPVFFKLMTTSSNNWMLIKIIKLRLQGVFAVNVVCELA 150
+ + L P +LM S + +R + V +CEL
Sbjct: 387 MAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPS--------VVVRDTAAWTVGRICELL 438
Query: 151 RKNPKNYLSLAPVFFKLM 168
+ N + LAP+ L+
Sbjct: 439 PEAAINDVYLAPLLQCLI 456
>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068
{Enterococcus faecalis [TaxId: 1351]}
Length = 213
Score = 25.4 bits (55), Expect = 6.5
Identities = 10/103 (9%), Positives = 31/103 (30%), Gaps = 2/103 (1%)
Query: 5 NMIRKDLNAQNQYDAGLALSALACFTSTDLARDLANDIMMLLTSTKPYLRKKAVLMMYKV 64
+ + + +D+ A +L + + + R+ A+ + +
Sbjct: 87 VAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTELPTIFALFYGAENFWNRRVALNLQLML 146
Query: 65 FLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK 107
K + + +Q A + + ++ NP+
Sbjct: 147 KEK--TNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQ 187
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.135 0.391
Gapped
Lambda K H
0.267 0.0500 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 895,780
Number of extensions: 38963
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 17
Length of query: 252
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 169
Effective length of database: 1,268,006
Effective search space: 214293014
Effective search space used: 214293014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.4 bits)