BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11028
(136 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P54362|AP3D_DROME AP-3 complex subunit delta OS=Drosophila melanogaster GN=g PE=1
SV=4
Length = 1034
Score = 221 bits (564), Expect = 8e-58, Method: Composition-based stats.
Identities = 103/120 (85%), Positives = 114/120 (95%)
Query: 8 LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
++STKPYLR KAVLMMYKVFL++P+ALRPAFP+LKEKLEDPD GVQSAAVNV+CELARKN
Sbjct: 156 MSSTKPYLRMKAVLMMYKVFLRYPEALRPAFPKLKEKLEDPDPGVQSAAVNVICELARKN 215
Query: 68 PKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLS 127
PKNYL LAP+FFKLMTTS+NNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIH ++S
Sbjct: 216 PKNYLPLAPIFFKLMTTSTNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHSTSAMS 275
>sp|O54774|AP3D1_MOUSE AP-3 complex subunit delta-1 OS=Mus musculus GN=Ap3d1 PE=1 SV=1
Length = 1199
Score = 218 bits (555), Expect = 8e-57, Method: Composition-based stats.
Identities = 100/120 (83%), Positives = 115/120 (95%)
Query: 8 LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
++ TKPY+RKKAVL+MYKVFLK+P++LRPAFPRLKEKLEDPD GVQSAAVNV+CELAR+N
Sbjct: 155 MSHTKPYIRKKAVLIMYKVFLKYPESLRPAFPRLKEKLEDPDPGVQSAAVNVICELARRN 214
Query: 68 PKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLS 127
PKNYLSLAP+FFKLMT+S+NNW+LIKIIKLFGALTPLEPRLGKKLIEPLTNLIH ++S
Sbjct: 215 PKNYLSLAPLFFKLMTSSTNNWVLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHSTSAMS 274
>sp|O14617|AP3D1_HUMAN AP-3 complex subunit delta-1 OS=Homo sapiens GN=AP3D1 PE=1 SV=1
Length = 1153
Score = 218 bits (554), Expect = 1e-56, Method: Composition-based stats.
Identities = 100/120 (83%), Positives = 115/120 (95%)
Query: 8 LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
++ TKPY+RKKAVL+MYKVFLK+P++LRPAFPRLKEKLEDPD GVQSAAVNV+CELAR+N
Sbjct: 155 MSHTKPYIRKKAVLIMYKVFLKYPESLRPAFPRLKEKLEDPDPGVQSAAVNVICELARRN 214
Query: 68 PKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLS 127
PKNYLSLAP+FFKLMT+S+NNW+LIKIIKLFGALTPLEPRLGKKLIEPLTNLIH ++S
Sbjct: 215 PKNYLSLAPLFFKLMTSSTNNWVLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHSTSAMS 274
>sp|Q865S1|AP3D1_BOVIN AP-3 complex subunit delta-1 OS=Bos taurus GN=AP3D1 PE=1 SV=2
Length = 1207
Score = 217 bits (552), Expect = 2e-56, Method: Composition-based stats.
Identities = 100/120 (83%), Positives = 115/120 (95%)
Query: 8 LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
++ TKPY+RKKAVL+MYKVFLK+P++LRPAFPRLKEKLEDPD GVQSAAVNV+CELAR+N
Sbjct: 155 MSHTKPYIRKKAVLIMYKVFLKYPESLRPAFPRLKEKLEDPDPGVQSAAVNVICELARRN 214
Query: 68 PKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLS 127
PKNYLSLAP+FFKLMT+S+NNW+LIKIIKLFGALTPLEPRLGKKLIEPLTNLIH ++S
Sbjct: 215 PKNYLSLAPLFFKLMTSSTNNWVLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHSTSAMS 274
>sp|Q54WN0|AP3D_DICDI AP-3 complex subunit delta OS=Dictyostelium discoideum GN=ap3d1
PE=3 SV=1
Length = 1143
Score = 165 bits (417), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 77/134 (57%), Positives = 108/134 (80%), Gaps = 9/134 (6%)
Query: 8 LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
L++ K ++ K+A+ ++YK+FL++P++LRPAFP+L+EKL+DP+ V S +VNV+CELAR+N
Sbjct: 142 LSTQKTHILKRAITVLYKIFLRYPESLRPAFPKLREKLDDPEPSVVSCSVNVICELARRN 201
Query: 68 PKNYLSLAPVFFKLMTTSSNN-WMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISL 126
PKNYL LAPV F+++T ++NN WMLIKI+KLF ALTP EPRLGKKLI+PLTN+I+ S+
Sbjct: 202 PKNYLPLAPVLFRILTNTTNNYWMLIKIVKLFAALTPHEPRLGKKLIDPLTNIINSSPSV 261
Query: 127 S--------CWTGI 132
S C TG+
Sbjct: 262 SLLYECIQTCITGM 275
>sp|Q9UTL8|AP3D_SCHPO AP-3 complex subunit delta OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=apl5 PE=3 SV=2
Length = 825
Score = 149 bits (375), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 67/123 (54%), Positives = 95/123 (77%)
Query: 5 FIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELA 64
I L + PY+RK+ +L++Y++ L++P+A+ P+L+E+L+DPD+ V +AAV+V+CELA
Sbjct: 141 LILLNHSVPYVRKRTILLLYRLCLQYPEAISACIPKLRERLDDPDTSVVNAAVSVICELA 200
Query: 65 RKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRII 124
R+ PKNYL AP F L+TTSSNNWMLIK+IKLF +LTP EPRL KKLI LT++I
Sbjct: 201 RRAPKNYLEFAPDLFHLLTTSSNNWMLIKLIKLFASLTPYEPRLVKKLIPSLTDIIENTH 260
Query: 125 SLS 127
++S
Sbjct: 261 AMS 263
>sp|Q08951|AP3D_YEAST AP-3 complex subunit delta OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=APL5 PE=1 SV=1
Length = 932
Score = 124 bits (311), Expect = 2e-28, Method: Composition-based stats.
Identities = 53/123 (43%), Positives = 89/123 (72%)
Query: 5 FIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELA 64
F L ST+PY+RKKA+ ++KVFL++P+ALR F + KL+D D V SAAV+V+CEL+
Sbjct: 167 FTMLNSTRPYIRKKAITALFKVFLQYPEALRDNFDKFVSKLDDDDISVVSAAVSVICELS 226
Query: 65 RKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRII 124
+KNP+ ++ L+P+ ++++ T NNW++I+++KLF L+ +EP+L KL+ + L+ +
Sbjct: 227 KKNPQPFIQLSPLLYEILVTIDNNWIIIRLLKLFTNLSQVEPKLRAKLLPKILELMESTV 286
Query: 125 SLS 127
+ S
Sbjct: 287 ATS 289
>sp|Q9C744|AP3D_ARATH AP-3 complex subunit delta OS=Arabidopsis thaliana GN=DELTA-ADR
PE=1 SV=1
Length = 869
Score = 118 bits (296), Expect = 1e-26, Method: Composition-based stats.
Identities = 56/123 (45%), Positives = 84/123 (68%)
Query: 5 FIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELA 64
F L S+K +++KKA+ ++ +VF K+ DA++ F RL E LE D + SA V V CELA
Sbjct: 152 FTLLGSSKSFVKKKAIGVVLRVFEKYHDAVKVCFKRLVENLETSDPQILSAVVGVFCELA 211
Query: 65 RKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRII 124
K+P++ L LAP F+K++ S NNW+LIK++K+F L +EPRLGKK+ EP+ + R +
Sbjct: 212 TKDPQSCLPLAPEFYKVLVDSRNNWVLIKVLKIFAKLALIEPRLGKKVAEPICEHMRRTV 271
Query: 125 SLS 127
+ S
Sbjct: 272 AKS 274
>sp|Q755A1|AP3D_ASHGO AP-3 complex subunit delta OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=APL5 PE=3 SV=1
Length = 899
Score = 117 bits (293), Expect = 2e-26, Method: Composition-based stats.
Identities = 50/123 (40%), Positives = 86/123 (69%)
Query: 5 FIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELA 64
F+ L STKPY+RKKAV ++KVFL++P+ LR F + ++LED D V SA V+V+CEL+
Sbjct: 165 FLMLHSTKPYIRKKAVTALFKVFLQYPEGLRDNFEKFVDRLEDDDLSVVSATVSVICELS 224
Query: 65 RKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRII 124
+ NP+ ++ L+P+ ++++ NNW++I+++KLF L +EP+L K++ + L+
Sbjct: 225 KHNPQPFIQLSPILYQMLIKVDNNWVIIRLLKLFTNLAQIEPKLRVKILPNVLELMDSTT 284
Query: 125 SLS 127
++S
Sbjct: 285 AIS 287
>sp|Q80V94|AP4E1_MOUSE AP-4 complex subunit epsilon-1 OS=Mus musculus GN=Ap4e1 PE=2 SV=3
Length = 1122
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 61/129 (47%), Gaps = 14/129 (10%)
Query: 8 LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
L +K +R+KAVL +YK +L P+ ++ + ++ L D D GV +A++++ + ++N
Sbjct: 176 LQHSKEIIRRKAVLALYKFYLIAPNQVQHIHTKFRKALCDRDVGVMAASLHIYLRMIKEN 235
Query: 68 PKNYLSLAPVFFKLMT--------------TSSNNWMLIKIIKLFGALTPLEPRLGKKLI 113
Y L F ++ + W+ I+++++ G L + R + +
Sbjct: 236 ASGYKDLTESFVTILKQVVGGKLPVEFSYHSVPAPWLQIQLLRILGLLGKDDERTSELMY 295
Query: 114 EPLTNLIHR 122
+ L + R
Sbjct: 296 DVLDESLRR 304
>sp|Q9UPM8|AP4E1_HUMAN AP-4 complex subunit epsilon-1 OS=Homo sapiens GN=AP4E1 PE=1 SV=2
Length = 1137
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 60/129 (46%), Gaps = 14/129 (10%)
Query: 8 LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
L +K +R+KAVL +YK L P+ ++ + ++ L D D GV +A++++ + ++N
Sbjct: 177 LQHSKEIVRRKAVLALYKFHLIAPNQVQHIHIKFRKALCDRDVGVMAASLHIYLRMIKEN 236
Query: 68 PKNYLSLAPVFFKLMT--------------TSSNNWMLIKIIKLFGALTPLEPRLGKKLI 113
Y L F ++ + W+ I+++++ G L + R + +
Sbjct: 237 SSGYKDLTGSFVTILKQVVGGKLPVEFNYHSVPAPWLQIQLLRILGLLGKDDQRTSELMY 296
Query: 114 EPLTNLIHR 122
+ L + R
Sbjct: 297 DVLDESLRR 305
>sp|Q8LPK4|AP2A2_ARATH AP-2 complex subunit alpha-2 OS=Arabidopsis thaliana GN=ALPHAC-AD
PE=1 SV=1
Length = 1013
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 9 TSTKPYLRKKAVLMMYKVFLKFPDALRPA--FPRLKEKLEDPDSGVQSAAVNVVCELARK 66
+S +P +RKKA L + ++F K PDA+ R+ + L++ D GV +++ +++ L
Sbjct: 152 SSCRPLVRKKAALCLLRLFRKNPDAVNVDGWADRMAQLLDERDLGVLTSSTSLLVALVSN 211
Query: 67 NPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTP 103
N + Y S P K++ + N + + +G +P
Sbjct: 212 NHEAYSSCLPKCVKILERLARNQDVPQEYTYYGIPSP 248
>sp|Q8LPL6|AP2A1_ARATH AP-2 complex subunit alpha-1 OS=Arabidopsis thaliana GN=ALPHA-ADR
PE=1 SV=1
Length = 1012
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 9 TSTKPYLRKKAVLMMYKVFLKFPDALRPA--FPRLKEKLEDPDSGVQSAAVNVVCELARK 66
+S +P +RKKA L + ++F K PDA+ R+ + L++ D GV +++ +++ L
Sbjct: 152 SSCRPLVRKKAALCLLRLFRKNPDAVNVDGWADRMAQLLDERDLGVLTSSTSLLVALVSN 211
Query: 67 NPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTP 103
N + Y S P K++ + N + + +G +P
Sbjct: 212 NHEAYSSCLPKCVKILERLARNQDVPQEYTYYGIPSP 248
>sp|O88512|AP1G2_MOUSE AP-1 complex subunit gamma-like 2 OS=Mus musculus GN=Ap1g2 PE=2
SV=2
Length = 791
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 8 LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
L PY+RKKA+L + K P+ P + L + G+Q V ++ EL +N
Sbjct: 147 LLQPSPYVRKKAILTAVHMIRKDPELSGIFLPPCTKLLRERHHGIQLGTVTLITELCERN 206
Query: 68 P---KNYLSLAPVFFKLMTT 84
P +++ + P +++ T
Sbjct: 207 PAALRHFRKVVPQLVQILRT 226
>sp|O43747|AP1G1_HUMAN AP-1 complex subunit gamma-1 OS=Homo sapiens GN=AP1G1 PE=1 SV=5
Length = 822
Score = 37.4 bits (85), Expect = 0.025, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 8 LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
L ++ YLRKKA L V K P+ + P K L + + GV +V ++ E+ ++
Sbjct: 146 LKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERS 205
Query: 68 PK---NYLSLAPVFFKLM 82
P ++ L P +++
Sbjct: 206 PDMLAHFRKLVPQLVRIL 223
>sp|Q5R5M2|AP1G1_PONAB AP-1 complex subunit gamma-1 OS=Pongo abelii GN=AP1G1 PE=2 SV=1
Length = 822
Score = 37.4 bits (85), Expect = 0.025, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 8 LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
L ++ YLRKKA L V K P+ + P K L + + GV +V ++ E+ ++
Sbjct: 146 LKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERS 205
Query: 68 PK---NYLSLAPVFFKLM 82
P ++ L P +++
Sbjct: 206 PDMPAHFRKLVPQLVRIL 223
>sp|P22892|AP1G1_MOUSE AP-1 complex subunit gamma-1 OS=Mus musculus GN=Ap1g1 PE=1 SV=3
Length = 822
Score = 37.4 bits (85), Expect = 0.026, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 8 LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
L ++ YLRKKA L V K P+ + P K L + + GV +V ++ E+ ++
Sbjct: 146 LKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERS 205
Query: 68 PK---NYLSLAPVFFKLM 82
P ++ L P +++
Sbjct: 206 PDMLAHFRKLVPQLVRIL 223
>sp|Q8I8U2|AP1G_DICDI AP-1 complex subunit gamma OS=Dictyostelium discoideum GN=ap1g1
PE=1 SV=1
Length = 895
Score = 37.4 bits (85), Expect = 0.031, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 8 LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNV---VCELA 64
++ + PY+RKKA L +V K PD P++K L + + V A+ + +CE+
Sbjct: 144 ISHSNPYIRKKAALCAIRVLRKVPDLTENYIPKIKALLSERNHAVILTALTLIIEICEMD 203
Query: 65 RKNPKNYLSLAPVFFKLMTTSSNNWML 91
++ + P +++ + +++ L
Sbjct: 204 STQIIHFKKMVPQLVRILKSLTSSGYL 230
>sp|Q99128|AP1G1_USTMA AP-1 complex subunit gamma-1 OS=Ustilago maydis (strain 521 / FGSC
9021) GN=APL4 PE=3 SV=2
Length = 853
Score = 36.6 bits (83), Expect = 0.050, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 32/60 (53%)
Query: 8 LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
+ S+ Y+R+KA + ++ K PD + R ++ L D + GV AV + E+ R++
Sbjct: 148 MGSSNTYIRRKAAICAMRIVRKVPDLIDHFVDRTQQLLSDKNHGVLLCAVTLAIEICRQD 207
>sp|O75843|AP1G2_HUMAN AP-1 complex subunit gamma-like 2 OS=Homo sapiens GN=AP1G2 PE=1
SV=1
Length = 785
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 8 LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
L PY+RKKA+L + K P+ P + L + G+ + ++ EL ++
Sbjct: 147 LLQPSPYVRKKAILTAVHMIRKVPELSSVFLPPCAQLLHERHHGILLGTITLITELCERS 206
Query: 68 P---KNYLSLAPVFFKLMTT 84
P +++ + P ++ T
Sbjct: 207 PAALRHFRKVVPQLVHILRT 226
>sp|Q8L7A9|AP4E_ARATH AP-4 complex subunit epsilon OS=Arabidopsis thaliana GN=At1g31730
PE=1 SV=1
Length = 938
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 37/75 (49%)
Query: 8 LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
L K +RKKA++ +++ K P ++ +++L D D GV A + + +L ++
Sbjct: 166 LNHQKEAVRKKAIMALHRFHRKSPSSVSHLVSNFRKRLCDNDPGVMGATLCPLFDLISED 225
Query: 68 PKNYLSLAPVFFKLM 82
+Y L F ++
Sbjct: 226 VNSYKDLVSSFVSIL 240
>sp|P17426|AP2A1_MOUSE AP-2 complex subunit alpha-1 OS=Mus musculus GN=Ap2a1 PE=1 SV=1
Length = 977
Score = 33.1 bits (74), Expect = 0.53, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 62/128 (48%), Gaps = 21/128 (16%)
Query: 15 LRKKAVLMMYKVFLKFPDALRPA---FPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY 71
+++ A L + +++ PD L P R+ L D GV +AAV+++ L +KNP ++
Sbjct: 164 VKQSAALCLLRLYKASPD-LVPMGEWTARVVHLLNDQHMGVVTAAVSLITCLCKKNPDDF 222
Query: 72 ---LSLAPVFFKLMTTSSNN-------------WMLIKIIKLFGALTPLEPRLGK-KLIE 114
+SLA + +S++ W+ +K+++L P E K +L+E
Sbjct: 223 KTCISLAVSRLSRIVSSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDAAVKGRLVE 282
Query: 115 PLTNLIHR 122
L ++++
Sbjct: 283 CLETVLNK 290
>sp|O95782|AP2A1_HUMAN AP-2 complex subunit alpha-1 OS=Homo sapiens GN=AP2A1 PE=1 SV=3
Length = 977
Score = 32.7 bits (73), Expect = 0.65, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 62/128 (48%), Gaps = 21/128 (16%)
Query: 15 LRKKAVLMMYKVFLKFPDALRPA---FPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY 71
+++ A L + +++ PD L P R+ L D GV +AAV+++ L +KNP ++
Sbjct: 164 VKQSAALCLLRLYKASPD-LVPMGEWTARVVHLLNDQHMGVVTAAVSLITCLCKKNPDDF 222
Query: 72 ---LSLAPVFFKLMTTSSNN-------------WMLIKIIKLFGALTPLEPRLGK-KLIE 114
+SLA + +S++ W+ +K+++L P E K +L+E
Sbjct: 223 KTCVSLAVSRLSRIVSSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDAAVKGRLVE 282
Query: 115 PLTNLIHR 122
L ++++
Sbjct: 283 CLETVLNK 290
>sp|Q9LSJ5|AB18B_ARATH ABC transporter B family member 18 OS=Arabidopsis thaliana
GN=ABCB18 PE=3 SV=1
Length = 1225
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 48 PDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNW--MLIKII--KLFGALTP 103
P + S + N+V + +PK+ SL P F +LM+ + W L + LFGA+ P
Sbjct: 613 PKEFIHSTSSNIVRDFPNLSPKDGKSLVPSFKRLMSMNRPEWKHALYGCLGAALFGAVQP 672
Query: 104 L 104
+
Sbjct: 673 I 673
>sp|Q9YHY6|CND1_XENLA Condensin complex subunit 1 OS=Xenopus laevis GN=ncapd2 PE=1 SV=1
Length = 1364
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 10 STKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
S P +R ++ + + ++FP+ + P P L +L DP V+ A V+ L K+
Sbjct: 1042 SPLPSVRSNIMIALGDLSIRFPNLIEPWTPNLYARLRDPSREVRKTAGMVMTHLILKD 1099
>sp|O35643|AP1B1_MOUSE AP-1 complex subunit beta-1 OS=Mus musculus GN=Ap1b1 PE=1 SV=2
Length = 943
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 6/132 (4%)
Query: 8 LTSTKPYLRKKAVLMMYKVFLKFPDALRPA--FPRLKEKLEDPDSGVQSAAVNVVCELAR 65
L PY+RK A + + K+ + LK+ + D + V + AV + E+A
Sbjct: 130 LKDEDPYVRKTAAVCVAKLHDINAQLVEDQGFLDTLKDLISDSNPMVVANAVAALSEIAE 189
Query: 66 KNP-KNYLSLAPVFFKLMTTSSN---NWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIH 121
+P N L L P + T+ N W I I+ P + R + + E +T +
Sbjct: 190 SHPSSNLLDLNPQSINKLLTALNECTEWGQIFILDCLANYMPKDDREAQSICERVTPRLS 249
Query: 122 RIISLSCWTGIK 133
S + +K
Sbjct: 250 HANSAVVLSAVK 261
>sp|Q9NFU6|COPB_TRYBB Coatomer subunit beta OS=Trypanosoma brucei brucei PE=3 SV=1
Length = 982
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 8 LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
LT Y+R+ AVL ++++F +FP+ L P L EK ++ V SA+ N L +
Sbjct: 143 LTHRVTYVRRNAVLAVHRIFKRFPELL-PDAAELVEKFISEENDV-SASRNAFEMLVECS 200
Query: 68 P 68
P
Sbjct: 201 P 201
>sp|Q10567|AP1B1_HUMAN AP-1 complex subunit beta-1 OS=Homo sapiens GN=AP1B1 PE=1 SV=2
Length = 949
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 6/132 (4%)
Query: 8 LTSTKPYLRKKAVLMMYKVFLKFPDALRPA--FPRLKEKLEDPDSGVQSAAVNVVCELAR 65
L PY+RK A + + K+ + LK+ + D + V + AV + E+A
Sbjct: 130 LKDEDPYVRKTAAVCVAKLHDINAQLVEDQGFLDTLKDLISDSNPMVVANAVAALSEIAE 189
Query: 66 KNP-KNYLSLAPVFFKLMTTSSN---NWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIH 121
+P N L L P + T+ N W I I+ P + R + + E +T +
Sbjct: 190 SHPSSNLLDLNPQSINKLLTALNECTEWGQIFILDCLANYMPKDDREAQSICERVTPRLS 249
Query: 122 RIISLSCWTGIK 133
S + +K
Sbjct: 250 HANSAVVLSAVK 261
>sp|Q9HNT1|ATGT_HALSA tRNA-guanine(15) transglycosylase OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=tgtA PE=3
SV=1
Length = 491
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 20/49 (40%)
Query: 27 FLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLA 75
F +P AL +P E D AA VC LA NP +LA
Sbjct: 418 FGPYPSALATTYPLTAETPARMDRAGYEAAAEGVCRLAEANPDTAFTLA 466
>sp|Q9C0W7|AP2A_SCHPO AP-2 complex subunit alpha OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=apl3 PE=3 SV=1
Length = 878
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 10 STKPYLRKKAVLMMYKVFLKFPDALRPA-FPRLKEKLEDPDSGVQSAAVNVVCELARKNP 68
S + +R+K+ L + ++ KFPD + P F + L D D V A N V + + P
Sbjct: 154 SNENIVRQKSALALLHIYRKFPDLINPEWFEPIVMILGDDDLNVSLAVSNFVNLIVIREP 213
Query: 69 K 69
K
Sbjct: 214 K 214
>sp|Q9YLS4|POLG_AEVCA Genome polyprotein OS=Avian encephalomyelitis virus (strain Calnek
vaccine) PE=2 SV=1
Length = 2134
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 28/48 (58%)
Query: 79 FKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISL 126
F S + +M+ ++ G + L+PRL +++EP+ N +H++ S+
Sbjct: 1887 FSNYDASLSPFMIYHAGRVLGQICGLDPRLVDRIMEPIVNSVHQLGSM 1934
>sp|Q6R325|POLG_AEVVR Genome polyprotein OS=Avian encephalomyelitis virus (strain Van
Reokel) PE=3 SV=1
Length = 2134
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 28/48 (58%)
Query: 79 FKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISL 126
F S + +M+ ++ G + L+PRL +++EP+ N +H++ S+
Sbjct: 1887 FSNYDASLSPFMIYHAGRVLGQICGLDPRLVDRIMEPIVNSVHQLGSM 1934
>sp|Q6WQ42|POLG_AEVL2 Genome polyprotein OS=Avian encephalomyelitis virus (strain L2Z) PE=3
SV=1
Length = 2134
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 28/48 (58%)
Query: 79 FKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISL 126
F S + +M+ ++ G + L+PRL +++EP+ N +H++ S+
Sbjct: 1887 FSNYDASLSPFMIYHAGRVLGQICGLDPRLVDRIMEPIVNSVHQLGSM 1934
>sp|Q86KI1|AP2A2_DICDI AP-2 complex subunit alpha-2 OS=Dictyostelium discoideum GN=ap2a1-1
PE=3 SV=1
Length = 989
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 9 TSTKPYLRKKAVLMMYKVFLKFPDALRPA--FPRLKEKLEDPDSGVQSAAVNVVCELARK 66
++ P ++K+ L + ++ K + P RL L++PD GV ++ ++++ ELA +
Sbjct: 163 NTSSPMVKKRCALAILRMNRKHIGLVTPDSWVERLVSVLDEPDFGVLTSLMSLLIELASE 222
Query: 67 NP 68
NP
Sbjct: 223 NP 224
>sp|A1K976|SYP_AZOSB Proline--tRNA ligase OS=Azoarcus sp. (strain BH72) GN=proS PE=3
SV=1
Length = 581
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 32 DALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMT 83
D + P R K++ E D +Q + VV ++AR+ K+Y L F+++ T
Sbjct: 87 DKMGPEMLRFKDRHER-DFALQPTSEEVVTDIARQELKSYRQLPKNFYQIQT 137
>sp|Q8K2Z4|CND1_MOUSE Condensin complex subunit 1 OS=Mus musculus GN=Ncapd2 PE=1 SV=2
Length = 1392
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 10 STKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
S+ P +R ++ + ++FP+ + P P L +L DP V+ A V+ L K+
Sbjct: 1056 SSLPTVRSNLMVATGDLAIRFPNLVDPWTPHLYARLRDPAQQVRKTAGLVMTHLILKD 1113
>sp|A4VNY2|ISCS_PSEU5 Cysteine desulfurase OS=Pseudomonas stutzeri (strain A1501) GN=iscS
PE=3 SV=1
Length = 404
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 98 FGALTPLEPRLGKKLIEPLTN 118
+ A TP++PR+ +K+IE LTN
Sbjct: 9 YSATTPVDPRVAEKMIECLTN 29
>sp|Q66JI9|COPG2_XENTR Coatomer subunit gamma-2 OS=Xenopus tropicalis GN=copg2 PE=2 SV=1
Length = 872
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 24/115 (20%), Positives = 55/115 (47%), Gaps = 3/115 (2%)
Query: 6 IYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELAR 65
++ +S KP LR AV + KV +K P A+ L+ + D + + + A+ + +
Sbjct: 294 LFCSSPKPALRYAAVRTLNKVAMKHPSAVTACNLDLENLITDSNRSIATLAITTLLKTGS 353
Query: 66 KNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLI 120
++ + L F ++ S+ + ++ +++ AL PR ++ L+N++
Sbjct: 354 ESSVDRLMKQISTF--VSEISDEFKVV-VVQAISALCQKYPRKHSVMMTFLSNML 405
>sp|Q6DKD7|COPG2_XENLA Coatomer subunit gamma-2 OS=Xenopus laevis GN=copg2 PE=2 SV=1
Length = 872
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 24/115 (20%), Positives = 55/115 (47%), Gaps = 3/115 (2%)
Query: 6 IYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELAR 65
++ +S KP LR AV + KV +K P A+ L+ + D + + + A+ + +
Sbjct: 294 LFCSSPKPALRYAAVRTLNKVAMKHPSAVTACNLDLENLITDSNRSIATLAITTLLKTGS 353
Query: 66 KNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLI 120
++ + L F ++ S+ + ++ +++ AL PR ++ L+N++
Sbjct: 354 ESSVDRLMKQISTF--VSEISDEFKVV-VVQAISALCQKYPRKHSVMMTFLSNML 405
>sp|Q54VE0|AP4E_DICDI AP-4 complex subunit epsilon OS=Dictyostelium discoideum GN=ap4e1
PE=3 SV=1
Length = 1080
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 8 LTSTKPYLRKKAVLMMYKVFLKFPDAL---RPAFPRLKEKLEDPDSGVQSAAVNVVCELA 64
L KP +RKK+V ++++ + D+ +L++ L D D V SA++ + +++
Sbjct: 174 LNHQKPIVRKKSVTVLHRFYRLVGDSFLDDDQIIDKLRQSLCDRDPSVMSASICIFLDIS 233
Query: 65 RKN 67
K+
Sbjct: 234 EKH 236
>sp|A2VE21|COPG2_BOVIN Coatomer subunit gamma-2 OS=Bos taurus GN=COPG2 PE=2 SV=1
Length = 871
Score = 29.3 bits (64), Expect = 6.6, Method: Composition-based stats.
Identities = 24/115 (20%), Positives = 55/115 (47%), Gaps = 3/115 (2%)
Query: 6 IYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELAR 65
++ +S KP LR AV + KV +K P A+ L+ + D + + + A+ + +
Sbjct: 294 LFCSSPKPALRYAAVRTLNKVAMKHPSAVTACNLDLENLITDSNRSIATLAITTLLKTGS 353
Query: 66 KNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLI 120
++ + L F ++ S+ + ++ +++ AL PR ++ L+N++
Sbjct: 354 ESSVDRLMKQISSF--VSEISDEFKVV-VVQAISALCQKYPRKHSVMMTFLSNML 405
>sp|Q9UBF2|COPG2_HUMAN Coatomer subunit gamma-2 OS=Homo sapiens GN=COPG2 PE=1 SV=1
Length = 871
Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats.
Identities = 24/115 (20%), Positives = 55/115 (47%), Gaps = 3/115 (2%)
Query: 6 IYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELAR 65
++ +S KP LR AV + KV +K P A+ L+ + D + + + A+ + +
Sbjct: 294 LFCSSPKPALRYAAVRTLNKVAMKHPSAVTACNLDLENLITDSNRSIATLAITTLLKTGS 353
Query: 66 KNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLI 120
++ + L F ++ S+ + ++ +++ AL PR ++ L+N++
Sbjct: 354 ESSVDRLMKQISSF--VSEISDEFKVV-VVQAISALCQKYPRKHSVMMTFLSNML 405
>sp|P46682|AP3B_YEAST AP-3 complex subunit beta OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=APL6 PE=1 SV=2
Length = 809
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 50 SGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMT--TSSNNWMLIKIIKLFGALTPLE-- 105
+ V A VNV+ L +KNP +L + L+T TS + I+ LFG + +E
Sbjct: 465 ASVLDAYVNVIRMLVQKNPTKHLRIIFKLADLLTVQTSLADNARAGIVWLFGEIASIEFK 524
Query: 106 --PRLGKKLIEPLTN 118
P + ++LI+ +N
Sbjct: 525 ICPDVLRRLIQNFSN 539
>sp|B1XT38|SYP_POLNS Proline--tRNA ligase OS=Polynucleobacter necessarius subsp.
necessarius (strain STIR1) GN=proS PE=3 SV=1
Length = 580
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 32 DALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMT 83
+ + P R+K++ D D +Q + VV +LAR K+Y L F+++ T
Sbjct: 87 EKMGPELLRIKDR-HDRDFLIQPTSEEVVTDLARNEIKSYKQLPVNFYQIQT 137
>sp|Q96DB5|RMD1_HUMAN Regulator of microtubule dynamics protein 1 OS=Homo sapiens
GN=RMDN1 PE=1 SV=1
Length = 314
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEK----LEDPDSGVQSAAV 57
LGYF P K +L++ K +LK + AF +K K + D +Q+ A
Sbjct: 245 LGYFHRAEQVDPNFYSKNLLLLGKTYLKLHNKKLAAFWLMKAKDYPAHTEEDKQIQTEAA 304
Query: 58 NVVCELARKN 67
++ + KN
Sbjct: 305 QLLTSFSEKN 314
>sp|Q54G18|GACW_DICDI Rho GTPase-activating protein gacW OS=Dictyostelium discoideum
GN=gacW PE=3 SV=1
Length = 1115
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 43 EKLEDPDSGVQSAAVNVVCELARK------NPKNYLSLAPVFFKLMTTSSNNWMLIKIIK 96
E ED D ++ V+ V + + NP +L FF+ M SSN ++ +
Sbjct: 753 EAGEDIDLKAENVDVDTVAGVLKSYFRELPNPIFPENLHEYFFQAMRQSSNEEIIQSLKD 812
Query: 97 LFGALTPLEPRLGKKLIEPLTNLIHRI 123
+ L+PLE ++ KKL L+H I
Sbjct: 813 IIDQLSPLECKMIKKLFH----LLHLI 835
>sp|Q9QXK3|COPG2_MOUSE Coatomer subunit gamma-2 OS=Mus musculus GN=Copg2 PE=2 SV=1
Length = 871
Score = 28.9 bits (63), Expect = 8.6, Method: Composition-based stats.
Identities = 24/115 (20%), Positives = 55/115 (47%), Gaps = 3/115 (2%)
Query: 6 IYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELAR 65
++ +S KP LR AV + KV +K P A+ L+ + D + + + A+ + +
Sbjct: 294 LFCSSPKPALRYAAVRTLNKVAMKHPSAVTACNLDLENLITDSNRSIATLAITTLLKTGS 353
Query: 66 KNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLI 120
++ + L F ++ S+ + ++ +++ AL PR ++ L+N++
Sbjct: 354 ESSVDRLMKQISSF--VSEISDEFKVV-VVQAISALCHKYPRKHSVMMTFLSNML 405
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.139 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,693,624
Number of Sequences: 539616
Number of extensions: 1757858
Number of successful extensions: 5614
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 5557
Number of HSP's gapped (non-prelim): 75
length of query: 136
length of database: 191,569,459
effective HSP length: 101
effective length of query: 35
effective length of database: 137,068,243
effective search space: 4797388505
effective search space used: 4797388505
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)