Query psy11028
Match_columns 136
No_of_seqs 110 out of 579
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 16:17:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11028.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11028hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1059|consensus 100.0 1.4E-33 3E-38 245.3 11.0 131 2-132 147-277 (877)
2 KOG1062|consensus 100.0 7E-29 1.5E-33 217.6 9.6 124 2-125 145-285 (866)
3 KOG1077|consensus 99.9 1.8E-23 3.8E-28 182.4 10.5 123 2-124 149-292 (938)
4 PTZ00429 beta-adaptin; Provisi 99.9 1.5E-22 3.2E-27 180.2 12.2 134 2-135 143-280 (746)
5 PF01602 Adaptin_N: Adaptin N 99.9 1.2E-21 2.7E-26 165.3 11.8 132 2-134 117-254 (526)
6 KOG1061|consensus 99.7 5.3E-17 1.2E-21 142.7 9.0 132 4-135 126-263 (734)
7 COG5096 Vesicle coat complex, 99.4 1.4E-12 3E-17 116.2 9.1 133 3-135 131-269 (757)
8 KOG1060|consensus 99.3 4.1E-12 8.9E-17 112.8 7.5 130 2-132 146-308 (968)
9 PF12717 Cnd1: non-SMC mitotic 98.8 1.2E-07 2.7E-12 71.2 11.7 128 2-130 28-168 (178)
10 KOG1058|consensus 98.2 5E-06 1.1E-10 74.5 7.4 123 1-130 136-261 (948)
11 PF01602 Adaptin_N: Adaptin N 98.1 1.9E-05 4E-10 67.0 8.3 129 2-133 45-174 (526)
12 cd00020 ARM Armadillo/beta-cat 97.8 0.00016 3.5E-09 48.7 8.3 98 3-101 11-118 (120)
13 PF12717 Cnd1: non-SMC mitotic 97.8 0.00057 1.2E-08 51.2 11.4 91 12-103 1-92 (178)
14 PF13646 HEAT_2: HEAT repeats; 97.1 0.0031 6.6E-08 40.9 7.1 84 3-98 3-87 (88)
15 PF10508 Proteasom_PSMB: Prote 97.1 0.0078 1.7E-07 52.1 11.1 111 2-114 80-200 (503)
16 PTZ00429 beta-adaptin; Provisi 96.8 0.0069 1.5E-07 55.1 8.9 129 2-133 71-201 (746)
17 PF04826 Arm_2: Armadillo-like 96.8 0.013 2.9E-07 46.7 9.0 125 3-128 58-192 (254)
18 PF05918 API5: Apoptosis inhib 96.7 0.0057 1.2E-07 53.9 7.2 74 10-83 33-106 (556)
19 PRK09687 putative lyase; Provi 96.5 0.036 7.8E-07 44.7 10.0 118 4-128 59-209 (280)
20 PF12755 Vac14_Fab1_bd: Vacuol 96.5 0.0078 1.7E-07 41.4 5.1 57 2-58 30-90 (97)
21 PF04826 Arm_2: Armadillo-like 96.4 0.037 8.1E-07 44.2 9.6 128 6-134 19-157 (254)
22 PRK09687 putative lyase; Provi 96.3 0.057 1.2E-06 43.5 10.2 96 2-104 26-121 (280)
23 PRK13800 putative oxidoreducta 96.3 0.057 1.2E-06 49.9 11.4 91 3-105 625-715 (897)
24 PF10508 Proteasom_PSMB: Prote 96.2 0.071 1.5E-06 46.2 11.0 123 3-126 123-258 (503)
25 cd00020 ARM Armadillo/beta-cat 96.2 0.082 1.8E-06 35.2 9.2 92 36-128 7-108 (120)
26 PF10363 DUF2435: Protein of u 95.9 0.072 1.6E-06 36.2 7.6 67 3-69 7-76 (92)
27 PF02985 HEAT: HEAT repeat; I 95.8 0.011 2.4E-07 31.9 2.6 28 2-29 3-30 (31)
28 PF13513 HEAT_EZ: HEAT-like re 95.5 0.014 3E-07 35.1 2.7 49 13-61 1-53 (55)
29 PF12830 Nipped-B_C: Sister ch 95.4 0.27 5.8E-06 37.2 10.0 114 3-116 49-183 (187)
30 PF13646 HEAT_2: HEAT repeats; 95.3 0.055 1.2E-06 34.8 5.3 78 38-128 1-79 (88)
31 PF05918 API5: Apoptosis inhib 95.3 0.064 1.4E-06 47.4 6.9 120 4-125 64-192 (556)
32 PF12348 CLASP_N: CLASP N term 95.2 0.13 2.8E-06 39.2 7.7 97 3-101 98-204 (228)
33 PF12348 CLASP_N: CLASP N term 95.2 0.31 6.7E-06 37.1 9.8 123 4-127 58-193 (228)
34 KOG2160|consensus 95.1 0.24 5.1E-06 41.4 9.5 104 3-106 128-243 (342)
35 KOG1059|consensus 94.9 0.23 5.1E-06 45.2 9.5 111 7-120 307-441 (877)
36 PRK13800 putative oxidoreducta 94.7 0.38 8.3E-06 44.5 10.6 20 6-25 721-740 (897)
37 PF12719 Cnd3: Nuclear condens 94.7 0.32 7E-06 39.1 9.0 64 5-68 33-96 (298)
38 KOG0414|consensus 94.6 0.12 2.6E-06 49.0 7.1 80 4-84 1003-1082(1251)
39 KOG1062|consensus 94.3 0.12 2.5E-06 47.4 6.2 129 3-134 74-202 (866)
40 PF10521 DUF2454: Protein of u 94.3 0.86 1.9E-05 36.6 10.7 121 3-123 123-277 (282)
41 PF11935 DUF3453: Domain of un 94.1 0.12 2.5E-06 40.8 5.1 59 7-65 1-72 (239)
42 KOG1060|consensus 94.0 0.59 1.3E-05 43.1 10.0 122 2-129 74-198 (968)
43 KOG1020|consensus 94.0 0.47 1E-05 46.3 9.6 115 4-123 821-940 (1692)
44 PLN03200 cellulose synthase-in 93.9 0.8 1.7E-05 46.2 11.3 122 3-125 613-749 (2102)
45 PF08623 TIP120: TATA-binding 93.2 0.54 1.2E-05 35.5 7.3 70 13-83 41-116 (169)
46 PLN03200 cellulose synthase-in 93.0 1.3 2.9E-05 44.7 11.3 121 4-125 409-544 (2102)
47 cd03561 VHS VHS domain family; 92.6 2.2 4.7E-05 30.4 9.4 85 18-102 19-111 (133)
48 KOG0166|consensus 92.5 0.83 1.8E-05 40.2 8.3 119 4-123 199-333 (514)
49 KOG0213|consensus 92.5 1.1 2.4E-05 41.5 9.2 99 3-102 803-911 (1172)
50 cd03568 VHS_STAM VHS domain fa 92.4 3.1 6.8E-05 30.4 10.2 74 29-102 30-109 (144)
51 cd06561 AlkD_like A new struct 92.1 0.63 1.4E-05 34.5 6.4 70 4-74 110-179 (197)
52 KOG2171|consensus 92.1 2.1 4.5E-05 40.7 10.8 122 9-131 47-179 (1075)
53 PF10274 ParcG: Parkin co-regu 92.1 2.4 5.3E-05 32.4 9.5 66 17-82 56-126 (183)
54 PF08167 RIX1: rRNA processing 91.6 1.6 3.5E-05 32.3 8.0 71 3-73 29-108 (165)
55 PF08713 DNA_alkylation: DNA a 91.5 0.15 3.3E-06 38.4 2.4 69 4-74 125-193 (213)
56 KOG2171|consensus 91.1 1.7 3.7E-05 41.2 9.2 124 2-125 392-530 (1075)
57 PF08167 RIX1: rRNA processing 91.0 1.5 3.1E-05 32.5 7.3 75 6-82 74-160 (165)
58 COG5181 HSH155 U2 snRNP splice 90.9 1.9 4.1E-05 39.2 8.9 82 3-84 608-699 (975)
59 PF03224 V-ATPase_H_N: V-ATPas 90.7 1.7 3.7E-05 35.1 8.0 120 5-124 111-252 (312)
60 COG5096 Vesicle coat complex, 90.1 4.1 8.9E-05 37.5 10.5 114 4-122 97-211 (757)
61 KOG0166|consensus 89.7 4.6 0.0001 35.6 10.2 128 5-133 158-301 (514)
62 smart00288 VHS Domain present 89.6 5.6 0.00012 28.4 9.1 81 22-102 23-110 (133)
63 PF12765 Cohesin_HEAT: HEAT re 89.3 0.74 1.6E-05 26.7 3.6 39 22-60 2-42 (42)
64 PF02985 HEAT: HEAT repeat; I 89.2 1 2.2E-05 24.0 3.9 29 38-66 2-30 (31)
65 cd03567 VHS_GGA VHS domain fam 89.2 5.9 0.00013 28.8 9.1 80 23-102 25-115 (139)
66 COG5098 Chromosome condensatio 89.2 4.6 9.9E-05 37.4 9.9 116 6-124 978-1096(1128)
67 PF13251 DUF4042: Domain of un 89.0 8.5 0.00018 29.3 10.8 115 15-129 2-163 (182)
68 PF08389 Xpo1: Exportin 1-like 89.0 1.6 3.4E-05 30.4 5.8 110 13-123 2-138 (148)
69 PF11841 DUF3361: Domain of un 88.8 4.6 0.0001 30.3 8.4 103 14-117 32-146 (160)
70 KOG1824|consensus 88.7 3.3 7.2E-05 39.2 8.9 100 8-107 183-290 (1233)
71 KOG2259|consensus 88.7 6.9 0.00015 35.8 10.7 106 14-123 388-513 (823)
72 KOG1020|consensus 88.7 1.8 3.9E-05 42.5 7.4 87 3-90 859-945 (1692)
73 cd03569 VHS_Hrs_Vps27p VHS dom 88.5 7.6 0.00016 28.2 9.3 77 26-102 31-113 (142)
74 KOG1078|consensus 88.5 1.6 3.6E-05 40.1 6.7 117 10-128 146-262 (865)
75 COG1413 FOG: HEAT repeat [Ener 87.6 11 0.00025 30.1 10.7 104 3-124 47-150 (335)
76 PF00790 VHS: VHS domain; Int 87.5 5.8 0.00012 28.4 8.0 84 19-102 25-117 (140)
77 PF12830 Nipped-B_C: Sister ch 86.8 11 0.00025 28.3 10.6 120 2-123 11-142 (187)
78 PF07539 DRIM: Down-regulated 86.8 1.1 2.3E-05 32.8 3.9 78 4-84 22-99 (141)
79 PF14500 MMS19_N: Dos2-interac 85.9 12 0.00026 30.0 9.8 61 4-66 4-70 (262)
80 PF12530 DUF3730: Protein of u 85.9 15 0.00032 28.7 11.7 81 19-103 104-189 (234)
81 PF10274 ParcG: Parkin co-regu 85.7 5.7 0.00012 30.4 7.5 93 28-120 28-126 (183)
82 KOG2023|consensus 85.3 2.3 5E-05 38.9 5.8 77 4-80 179-259 (885)
83 PF12460 MMS19_C: RNAPII trans 85.0 4.4 9.6E-05 34.1 7.3 74 9-82 333-411 (415)
84 KOG2023|consensus 85.0 4.4 9.5E-05 37.1 7.4 62 6-67 222-287 (885)
85 KOG0414|consensus 84.5 2 4.4E-05 41.1 5.3 76 9-84 933-1009(1251)
86 PF11701 UNC45-central: Myosin 84.3 5.3 0.00011 29.3 6.6 115 10-124 16-141 (157)
87 KOG1240|consensus 84.1 8.5 0.00019 37.4 9.2 129 3-135 582-764 (1431)
88 KOG2956|consensus 84.1 10 0.00022 33.2 9.1 71 3-73 333-409 (516)
89 PF10363 DUF2435: Protein of u 83.2 10 0.00023 25.5 7.2 68 38-107 5-76 (92)
90 PF12755 Vac14_Fab1_bd: Vacuol 83.1 8.1 0.00018 26.3 6.7 64 16-79 3-70 (97)
91 KOG3723|consensus 83.1 15 0.00032 33.4 9.7 82 24-105 187-268 (851)
92 COG5098 Chromosome condensatio 82.5 4.5 9.7E-05 37.4 6.5 64 5-68 352-418 (1128)
93 PF00514 Arm: Armadillo/beta-c 82.4 3.4 7.3E-05 23.1 3.9 28 37-64 13-40 (41)
94 PF05804 KAP: Kinesin-associat 82.4 5.4 0.00012 36.5 7.1 98 4-104 336-442 (708)
95 KOG1991|consensus 82.2 11 0.00025 35.6 9.1 120 3-122 466-600 (1010)
96 KOG0168|consensus 81.9 2.1 4.6E-05 39.9 4.3 65 9-73 566-637 (1051)
97 KOG1242|consensus 81.5 2.8 6E-05 37.3 4.8 47 2-49 298-346 (569)
98 PF13513 HEAT_EZ: HEAT-like re 81.1 1.2 2.7E-05 26.3 1.8 23 3-25 32-54 (55)
99 cd00197 VHS_ENTH_ANTH VHS, ENT 81.0 7.9 0.00017 26.5 6.1 57 17-73 18-74 (115)
100 KOG2274|consensus 81.0 13 0.00027 35.1 8.9 117 6-124 498-626 (1005)
101 KOG2149|consensus 81.0 27 0.00059 29.9 10.3 120 3-123 62-194 (393)
102 KOG1824|consensus 80.2 4.8 0.0001 38.2 6.0 117 4-126 971-1100(1233)
103 KOG0212|consensus 80.1 35 0.00076 30.9 11.0 79 5-83 342-425 (675)
104 PF03224 V-ATPase_H_N: V-ATPas 80.0 9 0.0002 30.9 7.0 75 47-122 68-157 (312)
105 KOG1058|consensus 79.6 15 0.00033 34.2 8.8 81 3-83 321-443 (948)
106 PTZ00479 RAP Superfamily; Prov 79.5 9.6 0.00021 32.9 7.2 64 72-136 156-219 (435)
107 PF14663 RasGEF_N_2: Rapamycin 78.5 3.2 6.9E-05 29.1 3.5 52 37-89 9-62 (115)
108 PF14225 MOR2-PAG1_C: Cell mor 77.4 9.6 0.00021 30.6 6.4 57 73-130 188-247 (262)
109 cd03568 VHS_STAM VHS domain fa 77.4 23 0.00049 25.8 7.9 81 4-84 42-130 (144)
110 cd03572 ENTH_epsin_related ENT 76.2 9.3 0.0002 27.3 5.4 49 24-72 26-74 (122)
111 KOG1048|consensus 76.0 34 0.00074 31.5 10.0 105 2-106 236-352 (717)
112 KOG0168|consensus 75.2 38 0.00082 32.1 10.1 125 4-132 216-356 (1051)
113 KOG2160|consensus 74.4 49 0.0011 27.8 9.9 61 9-69 177-244 (342)
114 KOG1293|consensus 74.1 31 0.00067 31.4 9.1 92 9-101 387-488 (678)
115 PF08568 Kinetochor_Ybp2: Unch 73.6 30 0.00065 30.9 9.1 54 9-64 452-506 (633)
116 TIGR02270 conserved hypothetic 72.8 50 0.0011 28.2 9.9 26 77-103 151-176 (410)
117 TIGR02270 conserved hypothetic 72.3 37 0.00081 29.0 9.0 55 4-65 122-176 (410)
118 KOG1242|consensus 71.6 36 0.00078 30.5 8.9 83 2-84 219-306 (569)
119 KOG0212|consensus 71.5 27 0.00058 31.5 8.0 93 9-103 177-279 (675)
120 PF07571 DUF1546: Protein of u 71.4 28 0.0006 23.3 6.7 52 12-63 19-76 (92)
121 KOG1061|consensus 71.4 10 0.00022 34.8 5.6 92 11-103 362-453 (734)
122 PF14631 FancD2: Fanconi anaem 70.9 6.3 0.00014 38.8 4.5 98 5-102 441-541 (1426)
123 KOG1293|consensus 70.6 86 0.0019 28.7 11.5 116 5-120 425-550 (678)
124 PF12530 DUF3730: Protein of u 70.3 49 0.0011 25.7 10.9 73 48-120 96-168 (234)
125 PF06012 DUF908: Domain of Unk 69.6 21 0.00045 29.3 6.7 32 36-67 26-57 (329)
126 cd03572 ENTH_epsin_related ENT 69.5 27 0.0006 24.9 6.5 63 40-103 5-67 (122)
127 PF11099 M11L: Apoptosis regul 69.4 7.7 0.00017 29.3 3.8 34 35-68 63-97 (167)
128 cd03561 VHS VHS domain family; 68.7 39 0.00084 23.9 8.1 80 4-83 42-132 (133)
129 KOG1078|consensus 67.5 34 0.00074 31.9 8.0 116 6-121 289-421 (865)
130 PF01603 B56: Protein phosphat 67.5 45 0.00098 28.2 8.5 63 4-66 138-205 (409)
131 PTZ00479 RAP Superfamily; Prov 67.2 34 0.00073 29.7 7.6 81 49-130 59-139 (435)
132 PF08506 Cse1: Cse1; InterPro 67.1 31 0.00068 29.0 7.4 111 13-125 224-360 (370)
133 COG5537 IRR1 Cohesin [Cell div 66.4 38 0.00082 30.9 7.9 127 8-134 284-423 (740)
134 PF04388 Hamartin: Hamartin pr 65.4 32 0.00069 31.3 7.6 72 12-83 81-158 (668)
135 smart00185 ARM Armadillo/beta- 65.4 12 0.00027 19.9 3.3 28 37-64 13-40 (41)
136 PF14676 FANCI_S2: FANCI solen 64.6 48 0.001 24.5 7.3 105 18-122 37-143 (158)
137 PF14664 RICTOR_N: Rapamycin-i 64.2 87 0.0019 26.3 9.9 115 8-124 117-272 (371)
138 PF08389 Xpo1: Exportin 1-like 63.5 24 0.00051 24.3 5.2 46 55-102 7-53 (148)
139 KOG0413|consensus 63.4 8.2 0.00018 37.0 3.4 80 11-91 943-1023(1529)
140 PF05804 KAP: Kinesin-associat 62.9 55 0.0012 30.1 8.6 89 37-126 291-387 (708)
141 TIGR02414 pepN_proteo aminopep 62.8 95 0.0021 29.2 10.2 111 9-124 716-850 (863)
142 KOG1820|consensus 62.8 1E+02 0.0022 28.9 10.4 122 3-125 257-404 (815)
143 KOG2199|consensus 62.6 91 0.002 27.1 9.2 64 21-84 30-99 (462)
144 cd07064 AlkD_like_1 A new stru 61.9 37 0.0008 26.0 6.4 70 4-75 120-189 (208)
145 PF11698 V-ATPase_H_C: V-ATPas 61.6 28 0.0006 24.8 5.3 62 6-67 50-117 (119)
146 PF04858 TH1: TH1 protein; In 60.8 75 0.0016 28.6 8.9 116 17-132 382-511 (584)
147 COG1413 FOG: HEAT repeat [Ener 60.8 69 0.0015 25.6 8.1 55 5-65 80-135 (335)
148 PF08082 PRO8NT: PRO8NT (NUC06 60.5 5.9 0.00013 29.4 1.7 29 73-101 36-65 (152)
149 KOG2081|consensus 59.3 68 0.0015 28.7 8.2 98 1-102 428-535 (559)
150 KOG4524|consensus 59.3 37 0.0008 32.3 6.8 100 4-103 808-932 (1014)
151 PF08045 CDC14: Cell division 58.1 93 0.002 25.1 8.3 84 19-102 111-206 (257)
152 COG5240 SEC21 Vesicle coat com 57.4 53 0.0012 30.1 7.3 75 29-103 257-335 (898)
153 KOG3723|consensus 56.8 85 0.0018 28.7 8.4 106 21-128 133-253 (851)
154 KOG0946|consensus 55.9 49 0.0011 31.1 7.0 79 5-83 128-218 (970)
155 PF09324 DUF1981: Domain of un 55.8 30 0.00066 22.8 4.4 52 9-60 28-83 (86)
156 cd00256 VATPase_H VATPase_H, r 55.5 1.4E+02 0.003 25.9 11.0 80 5-84 107-196 (429)
157 PF11865 DUF3385: Domain of un 55.0 22 0.00048 26.2 4.0 41 70-110 7-47 (160)
158 KOG2973|consensus 54.2 1.1E+02 0.0023 25.8 8.1 48 2-50 6-58 (353)
159 PHA02855 anti-apoptotic membra 53.7 31 0.00066 26.3 4.5 45 38-82 78-128 (180)
160 KOG2933|consensus 53.5 1.3E+02 0.0029 25.1 9.7 128 5-134 94-228 (334)
161 COG5181 HSH155 U2 snRNP splice 53.2 42 0.00091 31.0 6.0 66 18-83 668-740 (975)
162 PF13251 DUF4042: Domain of un 52.3 16 0.00036 27.7 3.0 39 30-68 139-177 (182)
163 PF09759 Atx10homo_assoc: Spin 52.1 13 0.00028 25.8 2.2 24 9-32 40-63 (102)
164 COG5116 RPN2 26S proteasome re 50.6 20 0.00043 32.7 3.5 60 6-65 628-692 (926)
165 KOG0413|consensus 50.5 1E+02 0.0022 30.0 8.2 77 2-80 1009-1090(1529)
166 KOG1248|consensus 50.5 1.8E+02 0.0038 28.5 9.8 127 5-133 703-849 (1176)
167 smart00567 EZ_HEAT E-Z type HE 50.2 31 0.00068 17.6 3.1 28 14-47 2-29 (30)
168 cd03564 ANTH_AP180_CALM ANTH d 49.6 71 0.0015 21.9 5.7 68 4-71 5-72 (117)
169 cd00197 VHS_ENTH_ANTH VHS, ENT 49.1 79 0.0017 21.4 5.8 60 43-103 7-66 (115)
170 PF05536 Neurochondrin: Neuroc 49.0 1.9E+02 0.0042 25.6 9.8 85 12-99 69-164 (543)
171 PF12231 Rif1_N: Rap1-interact 48.9 1.3E+02 0.0028 25.1 8.1 106 15-121 150-262 (372)
172 KOG2011|consensus 48.7 33 0.00072 32.9 4.9 57 7-63 334-397 (1048)
173 COG5116 RPN2 26S proteasome re 48.3 58 0.0013 29.9 6.1 55 9-67 562-616 (926)
174 KOG2274|consensus 47.2 69 0.0015 30.5 6.6 73 11-83 50-138 (1005)
175 cd03569 VHS_Hrs_Vps27p VHS dom 46.6 1.1E+02 0.0024 22.1 7.8 80 4-83 46-133 (142)
176 PF11865 DUF3385: Domain of un 46.2 37 0.00081 24.9 4.0 15 71-85 126-140 (160)
177 COG5240 SEC21 Vesicle coat com 45.8 83 0.0018 28.9 6.6 51 54-104 431-481 (898)
178 KOG2062|consensus 45.5 18 0.00039 33.7 2.5 54 9-66 565-618 (929)
179 KOG2259|consensus 45.5 59 0.0013 30.0 5.7 63 5-68 204-266 (823)
180 COG5218 YCG1 Chromosome conden 45.0 1.5E+02 0.0033 27.4 8.1 79 3-83 95-179 (885)
181 KOG4224|consensus 44.7 1.2E+02 0.0027 26.3 7.3 99 4-103 256-363 (550)
182 PRK14015 pepN aminopeptidase N 43.4 2.8E+02 0.0061 26.2 10.1 114 7-124 723-860 (875)
183 KOG1077|consensus 42.8 1.2E+02 0.0026 28.4 7.3 120 3-124 78-200 (938)
184 KOG4653|consensus 42.6 66 0.0014 30.5 5.7 67 3-69 731-801 (982)
185 PF08064 UME: UME (NUC010) dom 42.1 1.1E+02 0.0024 20.8 6.1 73 10-82 26-101 (107)
186 PF08713 DNA_alkylation: DNA a 41.8 16 0.00034 27.2 1.5 36 5-40 161-196 (213)
187 cd00256 VATPase_H VATPase_H, r 41.5 2.4E+02 0.0051 24.5 8.9 85 38-123 55-155 (429)
188 PF00790 VHS: VHS domain; Int 41.4 1.3E+02 0.0027 21.3 6.6 80 4-83 47-137 (140)
189 KOG2025|consensus 41.2 1.8E+02 0.0038 27.4 8.1 81 4-84 90-174 (892)
190 PF11935 DUF3453: Domain of un 40.7 82 0.0018 24.6 5.4 45 38-82 116-162 (239)
191 PF08767 CRM1_C: CRM1 C termin 40.6 58 0.0013 26.6 4.7 50 17-66 44-106 (319)
192 smart00288 VHS Domain present 40.5 1.3E+02 0.0028 21.2 7.6 80 4-83 42-130 (133)
193 PF03914 CBF: CBF/Mak21 family 40.3 78 0.0017 23.0 5.0 50 19-68 46-98 (164)
194 KOG2062|consensus 40.3 46 0.00099 31.1 4.3 49 6-54 631-683 (929)
195 KOG1048|consensus 40.0 1.1E+02 0.0023 28.4 6.6 87 3-90 570-671 (717)
196 PF12074 DUF3554: Domain of un 39.9 33 0.00071 27.9 3.2 40 6-45 211-253 (339)
197 PF11698 V-ATPase_H_C: V-ATPas 39.2 1.4E+02 0.003 21.3 5.8 72 37-122 44-116 (119)
198 cd03565 VHS_Tom1 VHS domain fa 38.7 1.5E+02 0.0032 21.3 9.0 69 34-102 36-114 (141)
199 cd00871 PI4Ka Phosphoinositide 38.2 1.1E+02 0.0023 23.2 5.5 84 22-105 24-118 (175)
200 KOG1241|consensus 37.7 55 0.0012 30.5 4.4 64 1-65 408-477 (859)
201 PF11864 DUF3384: Domain of un 35.5 2.9E+02 0.0062 23.7 11.0 91 14-104 5-100 (464)
202 KOG2434|consensus 35.4 1.1E+02 0.0024 27.1 5.8 38 45-82 83-120 (500)
203 KOG1517|consensus 35.4 1.3E+02 0.0029 29.4 6.5 61 6-66 606-672 (1387)
204 PF14750 INTS2: Integrator com 35.2 2.2E+02 0.0048 27.6 8.1 113 14-126 903-1046(1049)
205 KOG2021|consensus 35.0 20 0.00043 33.5 1.2 40 6-45 542-585 (980)
206 PF11841 DUF3361: Domain of un 34.9 1.4E+02 0.003 22.4 5.5 58 12-69 73-135 (160)
207 KOG2956|consensus 34.6 35 0.00075 30.1 2.5 30 2-31 451-480 (516)
208 KOG2038|consensus 34.5 1.6E+02 0.0035 27.9 6.8 75 9-83 314-388 (988)
209 COG4912 Predicted DNA alkylati 34.3 1.3E+02 0.0028 23.8 5.5 63 9-72 128-190 (222)
210 PRK01233 glyS glycyl-tRNA synt 34.0 2.4E+02 0.0051 26.0 7.8 22 9-30 470-491 (682)
211 PF01365 RYDR_ITPR: RIH domain 33.9 47 0.001 25.0 3.0 69 54-125 119-192 (207)
212 KOG2213|consensus 33.8 3.2E+02 0.0069 23.9 8.1 110 14-125 39-165 (460)
213 KOG3961|consensus 33.6 81 0.0018 25.3 4.3 74 30-103 106-184 (262)
214 TIGR02289 M3_not_pepF oligoend 33.5 62 0.0013 28.4 4.0 33 3-35 148-180 (549)
215 KOG1243|consensus 33.3 2.4E+02 0.0052 26.0 7.6 82 2-105 333-420 (690)
216 KOG1993|consensus 33.1 2.5E+02 0.0054 26.7 7.8 114 7-121 86-240 (978)
217 COG5657 CSE1 CAS/CSE protein i 33.1 4.5E+02 0.0097 25.3 11.0 81 20-100 106-202 (947)
218 PF12612 TFCD_C: Tubulin foldi 33.0 2.1E+02 0.0045 21.4 8.7 119 5-123 13-188 (193)
219 PF09088 MIF4G_like: MIF4G lik 32.7 1.2E+02 0.0027 23.3 5.1 27 56-82 92-118 (191)
220 PRK06030 hypothetical protein; 31.9 1.7E+02 0.0037 20.8 5.4 47 37-86 71-117 (124)
221 PF01465 GRIP: GRIP domain; I 31.9 50 0.0011 19.3 2.2 26 98-123 13-38 (46)
222 PF04499 SAPS: SIT4 phosphatas 31.1 1.3E+02 0.0028 26.2 5.6 35 37-71 119-154 (475)
223 PF05536 Neurochondrin: Neuroc 31.0 3.8E+02 0.0082 23.8 8.8 97 4-102 10-127 (543)
224 COG5215 KAP95 Karyopherin (imp 30.9 1.2E+02 0.0025 28.0 5.2 50 34-83 637-690 (858)
225 PF12460 MMS19_C: RNAPII trans 29.8 3.4E+02 0.0073 22.8 7.8 103 6-110 278-401 (415)
226 PF08045 CDC14: Cell division 29.7 1.9E+02 0.0041 23.3 5.9 58 49-106 104-166 (257)
227 TIGR02568 LcrE type III secret 29.7 1E+02 0.0022 24.1 4.3 51 78-128 81-132 (240)
228 PF01347 Vitellogenin_N: Lipop 29.6 3.8E+02 0.0083 23.4 8.7 105 11-124 447-571 (618)
229 PF11882 DUF3402: Domain of un 29.4 99 0.0022 26.5 4.5 63 45-108 261-328 (409)
230 PF12783 Sec7_N: Guanine nucle 29.1 2.2E+02 0.0048 20.5 6.9 66 39-104 76-147 (168)
231 KOG3252|consensus 28.9 44 0.00096 26.0 2.0 30 17-46 43-74 (217)
232 PF14841 FliG_M: FliG middle d 28.9 1.6E+02 0.0035 18.9 6.1 72 39-124 3-74 (79)
233 KOG4535|consensus 28.4 3.1E+02 0.0068 24.8 7.3 131 5-135 2-174 (728)
234 PF14222 MOR2-PAG1_N: Cell mor 28.2 1.4E+02 0.003 26.6 5.3 57 8-65 480-549 (552)
235 COG5110 RPN1 26S proteasome re 27.8 42 0.00092 30.5 2.0 46 37-82 48-100 (881)
236 KOG2549|consensus 27.3 4.7E+02 0.01 23.7 8.8 116 2-123 210-351 (576)
237 COG4306 Uncharacterized protei 27.1 79 0.0017 23.1 3.0 73 53-127 85-157 (160)
238 cd00870 PI3Ka_III Phosphoinosi 27.1 1E+02 0.0022 23.0 3.7 63 3-68 80-150 (166)
239 PLN03076 ARF guanine nucleotid 27.0 2.2E+02 0.0048 29.3 6.9 31 6-36 1354-1384(1780)
240 PF13001 Ecm29: Proteasome sta 27.0 2.2E+02 0.0047 24.8 6.3 59 10-68 385-446 (501)
241 KOG0211|consensus 26.9 5.3E+02 0.012 24.1 9.8 93 10-103 529-625 (759)
242 KOG4524|consensus 26.5 2.5E+02 0.0055 27.0 6.8 90 34-124 801-902 (1014)
243 PF09280 XPC-binding: XPC-bind 26.4 55 0.0012 20.3 1.8 39 23-73 13-51 (59)
244 KOG1820|consensus 25.7 2.6E+02 0.0056 26.4 6.7 68 2-69 374-447 (815)
245 COG5593 Nucleic-acid-binding p 25.5 2.4E+02 0.0052 25.8 6.1 68 2-69 193-261 (821)
246 COG5218 YCG1 Chromosome conden 25.4 5.6E+02 0.012 23.9 9.1 94 41-134 51-155 (885)
247 COG1460 Uncharacterized protei 24.7 1.7E+02 0.0037 20.7 4.3 33 89-121 33-65 (114)
248 smart00273 ENTH Epsin N-termin 24.6 2.3E+02 0.0049 19.5 5.0 54 17-70 20-74 (127)
249 PF12333 Ipi1_N: Rix1 complex 24.6 81 0.0018 21.4 2.6 27 7-33 19-45 (102)
250 KOG1943|consensus 24.4 3E+02 0.0066 26.9 6.9 80 4-83 346-430 (1133)
251 KOG0267|consensus 24.2 1.6E+02 0.0035 27.5 4.9 63 41-103 681-747 (825)
252 KOG2199|consensus 24.1 4.5E+02 0.0097 22.9 7.3 82 3-84 49-138 (462)
253 PF09450 DUF2019: Domain of un 24.0 36 0.00077 23.9 0.7 37 4-43 52-88 (106)
254 KOG2734|consensus 24.0 60 0.0013 28.6 2.2 39 29-67 113-156 (536)
255 COG5215 KAP95 Karyopherin (imp 23.2 4.2E+02 0.009 24.6 7.2 80 22-102 579-667 (858)
256 KOG4413|consensus 23.1 4.9E+02 0.011 22.5 7.5 92 10-101 182-284 (524)
257 COG5064 SRP1 Karyopherin (impo 23.1 5E+02 0.011 22.5 8.6 122 4-126 162-300 (526)
258 KOG0213|consensus 22.9 1.8E+02 0.0038 27.7 5.0 49 35-83 882-935 (1172)
259 COG1987 FliQ Flagellar biosynt 22.9 1.6E+02 0.0035 20.0 3.7 42 58-100 36-79 (89)
260 KOG2137|consensus 22.7 2.9E+02 0.0064 25.5 6.3 89 33-123 386-476 (700)
261 PF03130 HEAT_PBS: PBS lyase H 22.4 43 0.00093 17.0 0.7 12 15-26 1-12 (27)
262 KOG1087|consensus 22.0 4.4E+02 0.0095 23.2 7.1 68 34-101 36-110 (470)
263 PLN00122 serine/threonine prot 21.8 1.7E+02 0.0037 22.1 4.0 44 37-80 96-140 (170)
264 PF13001 Ecm29: Proteasome sta 21.7 5.4E+02 0.012 22.4 7.8 82 3-84 27-113 (501)
265 PF07201 HrpJ: HrpJ-like domai 21.6 1.7E+02 0.0037 21.2 4.0 43 85-128 74-117 (166)
266 PF03635 Vps35: Vacuolar prote 21.6 1.2E+02 0.0026 28.2 3.7 92 7-105 421-522 (762)
267 PF05004 IFRD: Interferon-rela 21.4 4.5E+02 0.0097 21.4 10.8 118 3-120 47-180 (309)
268 KOG2757|consensus 21.3 1.9E+02 0.0041 24.8 4.6 78 6-83 173-251 (411)
269 KOG0839|consensus 21.3 5.5E+02 0.012 25.7 7.9 25 12-36 1083-1107(1477)
270 KOG1991|consensus 21.1 4.8E+02 0.01 25.3 7.5 62 6-67 96-158 (1010)
271 PF11867 DUF3387: Domain of un 20.8 3.6E+02 0.0077 22.1 6.1 56 73-128 155-215 (335)
272 PRK14908 glycyl-tRNA synthetas 20.7 6.3E+02 0.014 24.5 8.3 112 9-124 788-911 (1000)
273 KOG1788|consensus 20.4 2E+02 0.0043 28.9 4.9 55 47-102 478-537 (2799)
274 KOG2759|consensus 20.2 1.8E+02 0.0038 25.4 4.2 55 11-65 379-438 (442)
275 PF06025 DUF913: Domain of Unk 20.1 3.5E+02 0.0075 22.8 6.0 91 12-102 69-183 (379)
276 KOG0211|consensus 20.0 3.3E+02 0.0072 25.5 6.2 80 4-83 242-326 (759)
No 1
>KOG1059|consensus
Probab=100.00 E-value=1.4e-33 Score=245.27 Aligned_cols=131 Identities=66% Similarity=1.115 Sum_probs=129.2
Q ss_pred hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHH
Q psy11028 2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKL 81 (136)
Q Consensus 2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~i 81 (136)
.||+.||+|++|||||||++.+||+|.+|||.+.+.++++++.|+|+||||++||++++||++++||+.|.+++|.|+++
T Consensus 147 ~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkl 226 (877)
T KOG1059|consen 147 DDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKL 226 (877)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccchhhhhhhc
Q psy11028 82 MTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLSCWTGI 132 (136)
Q Consensus 82 L~~v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~s~sv~~~~ 132 (136)
|.++.|+|+.|||+|+|+.|.|.|||+.+|++|++.+++++|.|+|+++++
T Consensus 227 lttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYEC 277 (877)
T KOG1059|consen 227 LVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYEC 277 (877)
T ss_pred HhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999875
No 2
>KOG1062|consensus
Probab=99.96 E-value=7e-29 Score=217.61 Aligned_cols=124 Identities=23% Similarity=0.361 Sum_probs=116.6
Q ss_pred hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCc---chhhhHHHH
Q psy11028 2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK---NYLSLAPVF 78 (136)
Q Consensus 2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~---~~~~lvp~l 78 (136)
+||.++|+|++|||||||++|++|++|+.||+++.|.+..+++|+|+||||+.+++.+++++|+.+|+ .|++++|.|
T Consensus 145 peVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~l 224 (866)
T KOG1062|consen 145 PEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSL 224 (866)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999885 699999999
Q ss_pred HHHhc--------------cCCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccch
Q psy11028 79 FKLMT--------------TSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIIS 125 (136)
Q Consensus 79 v~iL~--------------~v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~s 125 (136)
++||+ +++|||+||+|||+|+.||.+|++..+...|.+.++.++++|
T Consensus 225 V~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntds 285 (866)
T KOG1062|consen 225 VKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDS 285 (866)
T ss_pred HHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccc
Confidence 99999 379999999999999999999988887788888888777665
No 3
>KOG1077|consensus
Probab=99.90 E-value=1.8e-23 Score=182.36 Aligned_cols=123 Identities=25% Similarity=0.448 Sum_probs=114.5
Q ss_pred hhhhhhc--CCCChHHHHHHHHHHHHHHhHCCCCchh--hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHH
Q psy11028 2 LGYFIYL--TSTKPYLRKKAVLMMYKVFLKFPDALRP--AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPV 77 (136)
Q Consensus 2 ~~V~klL--~~s~~~VRKKA~l~~~rl~~~~P~~v~~--~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~ 77 (136)
.||.|+| .++.++|||||++|++|+||+.||++.. |++++..+|+|.|.||++|+.+++..+++++|+.|+.++|.
T Consensus 149 ~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~ 228 (938)
T KOG1077|consen 149 DDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPL 228 (938)
T ss_pred hhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHH
Confidence 5888999 5689999999999999999999999974 89999999999999999999999999999999999999999
Q ss_pred HHHHhc----------------cCCChhHHHHHHHHhhhcCC-CChHHHhhhHHHHHHHHhccc
Q psy11028 78 FFKLMT----------------TSSNNWMLIKIIKLFGALTP-LEPRLGKKLIEPLTNLIHRII 124 (136)
Q Consensus 78 lv~iL~----------------~v~~pWlqikiLk~L~~l~~-~e~~~~~~l~e~l~~iL~~~~ 124 (136)
.++.|. .+|+||+|+|++|+|++|++ .|+.....+.|++..||+.++
T Consensus 229 avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~ 292 (938)
T KOG1077|consen 229 AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQ 292 (938)
T ss_pred HHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccc
Confidence 999887 27999999999999999984 668889999999999998877
No 4
>PTZ00429 beta-adaptin; Provisional
Probab=99.88 E-value=1.5e-22 Score=180.18 Aligned_cols=134 Identities=21% Similarity=0.232 Sum_probs=120.6
Q ss_pred hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCch--hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHH
Q psy11028 2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR--PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFF 79 (136)
Q Consensus 2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~--~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv 79 (136)
..|.++++|.+|||||+|++|++|+|+.+|+.++ .|.+.+.++|+|+|++|+.+|++++.++.+.+|+.|.-..+.+.
T Consensus 143 ~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~ 222 (746)
T PTZ00429 143 EPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVN 222 (746)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHH
Confidence 3578999999999999999999999999999986 58999999999999999999999999999999987755555555
Q ss_pred HHhccC--CChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccchhhhhhhcccC
Q psy11028 80 KLMTTS--SNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLSCWTGIKPM 135 (136)
Q Consensus 80 ~iL~~v--~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~s~sv~~~~k~~ 135 (136)
+++..+ .+||.|+.||++|..+.|.+.+++..+++.+.+.|+++|+++|+.++|.+
T Consensus 223 ~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~i 280 (746)
T PTZ00429 223 RLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVV 280 (746)
T ss_pred HHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 555543 58999999999999999999888999999999999999999999999964
No 5
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.87 E-value=1.2e-21 Score=165.34 Aligned_cols=132 Identities=33% Similarity=0.610 Sum_probs=122.2
Q ss_pred hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchh-hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHH
Q psy11028 2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRP-AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFK 80 (136)
Q Consensus 2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~-~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~ 80 (136)
.+|.++++|++|||||||++|++|+|+.+|+.+++ +.+.+.++|.|+|++|+.+|+.++.++ +.+|+.+..+++.+++
T Consensus 117 ~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~ 195 (526)
T PF01602_consen 117 PDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIR 195 (526)
T ss_dssp HHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHH
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHH
Confidence 46899999999999999999999999999999998 699999999999999999999999999 7788877789999999
Q ss_pred Hhc---cCCChhHHHHHHHHhhhcCCCChHHH--hhhHHHHHHHHhccchhhhhhhccc
Q psy11028 81 LMT---TSSNNWMLIKIIKLFGALTPLEPRLG--KKLIEPLTNLIHRIISLSCWTGIKP 134 (136)
Q Consensus 81 iL~---~v~~pWlqikiLk~L~~l~~~e~~~~--~~l~e~l~~iL~~~~s~sv~~~~k~ 134 (136)
.|. +.++||+|++++++|+.+++.++... ..+.+.+.+.+++++.+++..+++.
T Consensus 196 ~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~ 254 (526)
T PF01602_consen 196 ILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRL 254 (526)
T ss_dssp HHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 888 67999999999999999999999888 7899999999998888888777653
No 6
>KOG1061|consensus
Probab=99.70 E-value=5.3e-17 Score=142.74 Aligned_cols=132 Identities=24% Similarity=0.393 Sum_probs=118.0
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCchh--hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCc-chhhhHHHHHH
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRP--AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK-NYLSLAPVFFK 80 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~--~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~-~~~~lvp~lv~ 80 (136)
+.+++++.+||+||+|+.|+.++|+.+|+.+++ +.+.+.+++.|+||+|+.+|++.+.+|.+.+|+ ....+.+.+.+
T Consensus 126 l~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~ 205 (734)
T KOG1061|consen 126 LLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLIN 205 (734)
T ss_pred HHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHH
Confidence 568899999999999999999999999999985 899999999999999999999999999999985 44445555554
Q ss_pred Hhc---cCCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccchhhhhhhcccC
Q psy11028 81 LMT---TSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLSCWTGIKPM 135 (136)
Q Consensus 81 iL~---~v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~s~sv~~~~k~~ 135 (136)
-+- +-++.|.|+-||+.++.+.|.++++++.+.+.+.+.|+++++++|++++|++
T Consensus 206 ~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~ 263 (734)
T KOG1061|consen 206 KLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVI 263 (734)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHH
Confidence 332 2389999999999999999999999999999999999999999999999974
No 7
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=99.39 E-value=1.4e-12 Score=116.24 Aligned_cols=133 Identities=20% Similarity=0.263 Sum_probs=113.3
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchh--hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHH
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRP--AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFK 80 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~--~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~ 80 (136)
-|.++++|++|||||+|++|+.++|+.+|+...+ ..+.+..++.|+||-|+.+|+..+.++..++...|..-+-..+.
T Consensus 131 ~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e~a~~~~~~~~~~i~ 210 (757)
T COG5096 131 PIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPELAHGYSLEVILRIP 210 (757)
T ss_pred HHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchhhhhhHHHHHHHHhh
Confidence 4789999999999999999999999999999875 57888899999999999999999999988865555543333333
Q ss_pred Hhc----cCCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccchhhhhhhcccC
Q psy11028 81 LMT----TSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLSCWTGIKPM 135 (136)
Q Consensus 81 iL~----~v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~s~sv~~~~k~~ 135 (136)
-|. .+..+|+++-++..|....+..+..+....+.+...+++.++.+++.++|+.
T Consensus 211 ~l~~~~~~~~~~~~~~~~le~L~~~~~~~~~s~~~~~~~~~~~~~~~n~~vl~~av~~i 269 (757)
T COG5096 211 QLDLLSLSVSTEWLLLIILEVLTERVPTTPDSAEDFEERLSPPLQHNNAEVLLIAVKVI 269 (757)
T ss_pred hccchhhhhhHHHHHHHHHHHHHccCCCCCCcHHHHHHhccchhhhCcHHHHHHHHHHH
Confidence 221 2345999999999999998888889999999999999999999999999973
No 8
>KOG1060|consensus
Probab=99.31 E-value=4.1e-12 Score=112.80 Aligned_cols=130 Identities=18% Similarity=0.176 Sum_probs=110.4
Q ss_pred hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHH
Q psy11028 2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKL 81 (136)
Q Consensus 2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~i 81 (136)
.-|.++-.+..|||||.|++|+-|+|..+||-=....+.+..+|.|++|+|+.||+..+.++|-++-+..-+..-++-++
T Consensus 146 lAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~l 225 (968)
T KOG1060|consen 146 LAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRL 225 (968)
T ss_pred HHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhh
Confidence 45788889999999999999999999999998888999999999999999999999999999988766555555667778
Q ss_pred hccCCChhHHHHHHHHhhhcCC---CCh------------------------------HHHhhhHHHHHHHHhccchhhh
Q psy11028 82 MTTSSNNWMLIKIIKLFGALTP---LEP------------------------------RLGKKLIEPLTNLIHRIISLSC 128 (136)
Q Consensus 82 L~~v~~pWlqikiLk~L~~l~~---~e~------------------------------~~~~~l~e~l~~iL~~~~s~sv 128 (136)
|.++ +.|.||-++..|..|+. .+| ..-+-+++....+|++.|+++|
T Consensus 226 l~dv-deWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVV 304 (968)
T KOG1060|consen 226 LPDV-DEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVV 304 (968)
T ss_pred ccch-hhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHH
Confidence 8886 99999999999988742 112 1235688899999999999999
Q ss_pred hhhc
Q psy11028 129 WTGI 132 (136)
Q Consensus 129 ~~~~ 132 (136)
+.+.
T Consensus 305 mA~a 308 (968)
T KOG1060|consen 305 MAVA 308 (968)
T ss_pred HHHH
Confidence 8764
No 9
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.79 E-value=1.2e-07 Score=71.18 Aligned_cols=128 Identities=20% Similarity=0.254 Sum_probs=101.3
Q ss_pred hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchh-hHHHHHhhcCCCChhHHHHHHHHHHHHHhc-CCcchhhhHHHHH
Q psy11028 2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRP-AFPRLKEKLEDPDSGVQSAAVNVVCELARK-NPKNYLSLAPVFF 79 (136)
Q Consensus 2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~-~~~~l~~lL~D~d~~V~~aal~l~~~l~~~-~p~~~~~lvp~lv 79 (136)
+.+.++|++.+|.|||.|+.++.+++..+.-.+.+ .+..+..++.|+|+.|-..|..++.++... +|+.+.+..|.++
T Consensus 28 ~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i 107 (178)
T PF12717_consen 28 PNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELI 107 (178)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 45778999999999999999999999998877776 458888899999999999999999999998 9999999999998
Q ss_pred HHhccCC-ChhH-------HHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccc---hhhhhh
Q psy11028 80 KLMTTSS-NNWM-------LIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRII---SLSCWT 130 (136)
Q Consensus 80 ~iL~~v~-~pWl-------qikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~---s~sv~~ 130 (136)
.-|.+.. .|+. -.+|++++-.+-.. .+..+++.+.+.+-+.... ...++.
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~-d~~~~~l~~kl~~~~~~~~~~~~~~~~~ 168 (178)
T PF12717_consen 108 SSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK-DKQKESLVEKLCQRFLNAVVDEDERVLR 168 (178)
T ss_pred HHHhCccccccccccCHHHHHHHHHHHHHHcCc-HHHHHHHHHHHHHHHHHHcccccHHHHH
Confidence 8887631 2322 34667766655553 3446678888888777776 555543
No 10
>KOG1058|consensus
Probab=98.19 E-value=5e-06 Score=74.55 Aligned_cols=123 Identities=17% Similarity=0.265 Sum_probs=92.8
Q ss_pred ChhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhc-CCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHH
Q psy11028 1 MLGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKL-EDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFF 79 (136)
Q Consensus 1 ~~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL-~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv 79 (136)
|+-|..+|.|.++||||-|++|+..+|+..-+++++.-+-+.+-| .|.||+.--.|.-.+...-..+.-.| +-
T Consensus 136 ~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Y------l~ 209 (948)
T KOG1058|consen 136 MPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNY------LL 209 (948)
T ss_pred HHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHH------HH
Confidence 577899999999999999999999999997777777666666555 58899988877655544433322222 22
Q ss_pred HHhccC--CChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccchhhhhh
Q psy11028 80 KLMTTS--SNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLSCWT 130 (136)
Q Consensus 80 ~iL~~v--~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~s~sv~~ 130 (136)
+..-++ -++-+|.-|+.+.+.-+-.+|.+..+.++++++.|++++++ |.+
T Consensus 210 ~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssa-V~f 261 (948)
T KOG1058|consen 210 SNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSA-VIF 261 (948)
T ss_pred hhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCch-hhh
Confidence 222233 36888999999999888888999999999999999999654 444
No 11
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.06 E-value=1.9e-05 Score=66.97 Aligned_cols=129 Identities=16% Similarity=0.227 Sum_probs=94.1
Q ss_pred hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHH
Q psy11028 2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKL 81 (136)
Q Consensus 2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~i 81 (136)
.+|.+++.+++...||-+.+++-.+...+||.+--....+.+=|.++|+.+.+.|+..+..+. +|+....+.|.+.+.
T Consensus 45 ~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~l~~~v~~l 122 (526)
T PF01602_consen 45 MEVIKLISSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEPLIPDVIKL 122 (526)
T ss_dssp HHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhHHHHHHHHH
Confidence 367788888888888888888888888888866667777777788888888888888887776 666677777777777
Q ss_pred hccCCChhHHHHHHHHhhhcCCCChHHHhh-hHHHHHHHHhccchhhhhhhcc
Q psy11028 82 MTTSSNNWMLIKIIKLFGALTPLEPRLGKK-LIEPLTNLIHRIISLSCWTGIK 133 (136)
Q Consensus 82 L~~v~~pWlqikiLk~L~~l~~~e~~~~~~-l~e~l~~iL~~~~s~sv~~~~k 133 (136)
|.. ++|...-+-+-.+..+...+|...+. +.+.+.+.|...+..++.+|+.
T Consensus 123 l~~-~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~ 174 (526)
T PF01602_consen 123 LSD-PSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALS 174 (526)
T ss_dssp HHS-SSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHH
T ss_pred hcC-CchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHHHHH
Confidence 775 67777776665555555445555444 6888888887777666655543
No 12
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.84 E-value=0.00016 Score=48.74 Aligned_cols=98 Identities=20% Similarity=0.240 Sum_probs=76.9
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcc---hh--
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKN---YL-- 72 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~---~~-- 72 (136)
.+.++|+++++.+|..|+.|+..+...+|+... +.++.+.++|.|+|+.|..+++.++..++...+.. +.
T Consensus 11 ~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 90 (120)
T cd00020 11 ALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEA 90 (120)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHC
Confidence 356788899999999999999999987766544 36889999999999999999999999999877542 11
Q ss_pred hhHHHHHHHhccCCChhHHHHHHHHhhhc
Q psy11028 73 SLAPVFFKLMTTSSNNWMLIKIIKLFGAL 101 (136)
Q Consensus 73 ~lvp~lv~iL~~v~~pWlqikiLk~L~~l 101 (136)
.+++.+.+.|.. .+...+-..+.+|..+
T Consensus 91 g~l~~l~~~l~~-~~~~~~~~a~~~l~~l 118 (120)
T cd00020 91 GGVPKLVNLLDS-SNEDIQKNATGALSNL 118 (120)
T ss_pred CChHHHHHHHhc-CCHHHHHHHHHHHHHh
Confidence 357788887765 3666666666666554
No 13
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.80 E-value=0.00057 Score=51.25 Aligned_cols=91 Identities=21% Similarity=0.335 Sum_probs=75.2
Q ss_pred ChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhH-HHHHHHhccCCChhH
Q psy11028 12 KPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLA-PVFFKLMTTSSNNWM 90 (136)
Q Consensus 12 ~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lv-p~lv~iL~~v~~pWl 90 (136)
+|.||--|+.++--++..+|.+++.+.+.+.+.|.|+|+.|=-.|+.++..+...+.-.++... ..+...|.. ++|..
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D-~~~~I 79 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVD-ENPEI 79 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcC-CCHHH
Confidence 5789999999999999999999999999999999999999999999999999999876666544 666666654 56666
Q ss_pred HHHHHHHhhhcCC
Q psy11028 91 LIKIIKLFGALTP 103 (136)
Q Consensus 91 qikiLk~L~~l~~ 103 (136)
+-..-.+|..+..
T Consensus 80 r~~A~~~~~e~~~ 92 (178)
T PF12717_consen 80 RSLARSFFSELLK 92 (178)
T ss_pred HHHHHHHHHHHHH
Confidence 6555555555543
No 14
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.14 E-value=0.0031 Score=40.88 Aligned_cols=84 Identities=20% Similarity=0.252 Sum_probs=59.5
Q ss_pred hhhhhc-CCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHH
Q psy11028 3 GYFIYL-TSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKL 81 (136)
Q Consensus 3 ~V~klL-~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~i 81 (136)
...+.| ++++++||..|+.++-++-. +...+.+.+++.|+|+.|-.+++..+-.+.. .+.++.+.+.
T Consensus 3 ~L~~~l~~~~~~~vr~~a~~~L~~~~~------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~------~~~~~~L~~~ 70 (88)
T PF13646_consen 3 ALLQLLQNDPDPQVRAEAARALGELGD------PEAIPALIELLKDEDPMVRRAAARALGRIGD------PEAIPALIKL 70 (88)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHCCTH------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH------HHTHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCC------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------HHHHHHHHHH
Confidence 345666 89999999999999883311 1467888889999999999999888776632 3477888888
Q ss_pred hccCCChhHHHHHHHHh
Q psy11028 82 MTTSSNNWMLIKIIKLF 98 (136)
Q Consensus 82 L~~v~~pWlqikiLk~L 98 (136)
+.+-+++..+-...+.|
T Consensus 71 l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 71 LQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HTC-SSHHHHHHHHHHH
T ss_pred HcCCCcHHHHHHHHhhc
Confidence 87754444455444443
No 15
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.09 E-value=0.0078 Score=52.14 Aligned_cols=111 Identities=20% Similarity=0.241 Sum_probs=87.0
Q ss_pred hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhh--
Q psy11028 2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSL-- 74 (136)
Q Consensus 2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~l-- 74 (136)
..+.+.|.|+++.||.-|+-++.|+.+.....++ +.++.+...|.|.|.+|-.+|..++..++++.+. +..+
T Consensus 80 ~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~-~~~l~~ 158 (503)
T PF10508_consen 80 PFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEG-LEQLFD 158 (503)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchh-HHHHhC
Confidence 3467889999999999999999999877655332 3688899999999999999999999999986543 3333
Q ss_pred ---HHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHhhhHH
Q psy11028 75 ---APVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIE 114 (136)
Q Consensus 75 ---vp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~~l~e 114 (136)
.+.+.+.+.+ +++=...+++.++..++...+...+.+.+
T Consensus 159 ~~~~~~L~~l~~~-~~~~vR~Rv~el~v~i~~~S~~~~~~~~~ 200 (503)
T PF10508_consen 159 SNLLSKLKSLMSQ-SSDIVRCRVYELLVEIASHSPEAAEAVVN 200 (503)
T ss_pred cchHHHHHHHHhc-cCHHHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence 5666666655 68888999999999998777665554443
No 16
>PTZ00429 beta-adaptin; Provisional
Probab=96.84 E-value=0.0069 Score=55.09 Aligned_cols=129 Identities=12% Similarity=0.064 Sum_probs=76.7
Q ss_pred hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHH
Q psy11028 2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKL 81 (136)
Q Consensus 2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~i 81 (136)
.||.+++++++.-+||=..+.+.+.-+..||..-..+..+.+=+.|+||-|-+.|+..+..| ..|+....+.+.+.+.
T Consensus 71 ~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~I--r~~~i~e~l~~~lkk~ 148 (746)
T PTZ00429 71 VDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCI--RVSSVLEYTLEPLRRA 148 (746)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHH
Confidence 46777777777777777777777777777776655666677777777777777776655543 2344444555555555
Q ss_pred hccCCChhHHHHHHHHhhhcCCCChHH--HhhhHHHHHHHHhccchhhhhhhcc
Q psy11028 82 MTTSSNNWMLIKIIKLFGALTPLEPRL--GKKLIEPLTNLIHRIISLSCWTGIK 133 (136)
Q Consensus 82 L~~v~~pWlqikiLk~L~~l~~~e~~~--~~~l~e~l~~iL~~~~s~sv~~~~k 133 (136)
|.. ++|+.-=+-.=.+..+-..+|+. ...+.+.+.+.|+..+..++-+|+.
T Consensus 149 L~D-~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~ 201 (746)
T PTZ00429 149 VAD-PDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAA 201 (746)
T ss_pred hcC-CCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHH
Confidence 554 56665432222222211122222 2345666667777777776666654
No 17
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.76 E-value=0.013 Score=46.75 Aligned_cols=125 Identities=16% Similarity=0.224 Sum_probs=88.4
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhH--CCCCchhhHHHHHhhcC-C-CChhHHHHHHHHHHHHHhcCC--cchhhhHH
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLK--FPDALRPAFPRLKEKLE-D-PDSGVQSAAVNVVCELARKNP--KNYLSLAP 76 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~--~P~~v~~~~~~l~~lL~-D-~d~~V~~aal~l~~~l~~~~p--~~~~~lvp 76 (136)
-|.++|++++|.+|.+|.-|+.-+--- +.+.++.+++.+.+... + -|..+-.+++.++..+.-.+. ......+|
T Consensus 58 lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~ 137 (254)
T PF04826_consen 58 LIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIP 137 (254)
T ss_pred HHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHH
Confidence 367889999999999999998855332 23344556666665443 2 378888999999999976553 34556799
Q ss_pred HHHHHhccCCChhHHHHHHHHhhhcCCCChH----HHhhhHHHHHHHHhccchhhh
Q psy11028 77 VFFKLMTTSSNNWMLIKIIKLFGALTPLEPR----LGKKLIEPLTNLIHRIISLSC 128 (136)
Q Consensus 77 ~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~----~~~~l~e~l~~iL~~~~s~sv 128 (136)
.++++|.. .+.-.|+..||+|..|+....- ...+....+..++++..+..+
T Consensus 138 ~ll~LL~~-G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~ 192 (254)
T PF04826_consen 138 DLLSLLSS-GSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKEN 192 (254)
T ss_pred HHHHHHHc-CChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHccCCccHH
Confidence 99998877 5778999999999999876321 233444566677777655443
No 18
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.72 E-value=0.0057 Score=53.89 Aligned_cols=74 Identities=24% Similarity=0.378 Sum_probs=57.0
Q ss_pred CCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhc
Q psy11028 10 STKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMT 83 (136)
Q Consensus 10 ~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~ 83 (136)
.+++-.|+=|+--+.|+|+..|++.+..++.+.++.+|.|.+|=..|+--+-.+|+.+|+...+.+..|+.+|.
T Consensus 33 kg~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~ 106 (556)
T PF05918_consen 33 KGSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQ 106 (556)
T ss_dssp GS-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHh
Confidence 35788999999999999999999999999999999999999999999999999999998655555555555444
No 19
>PRK09687 putative lyase; Provisional
Probab=96.49 E-value=0.036 Score=44.66 Aligned_cols=118 Identities=16% Similarity=0.157 Sum_probs=60.6
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCC-chhhHHHHHhh-cCCCChhHHHHHHHHHHHHHhcCCcch----------
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDA-LRPAFPRLKEK-LEDPDSGVQSAAVNVVCELARKNPKNY---------- 71 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~-v~~~~~~l~~l-L~D~d~~V~~aal~l~~~l~~~~p~~~---------- 71 (136)
+.+++++.++.+|+-|+-++-.+=. |+. .+..++.+..+ ++|+|+.|-.+++..+-+++...+...
T Consensus 59 l~~ll~~~d~~vR~~A~~aLg~lg~--~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~ 136 (280)
T PRK09687 59 AIELCSSKNPIERDIGADILSQLGM--AKRCQDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQIT 136 (280)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCC--CccchHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHH
Confidence 3455666666666666666555422 221 12334444444 456666666555555544432221110
Q ss_pred ---------------------hhhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccchhhh
Q psy11028 72 ---------------------LSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLSC 128 (136)
Q Consensus 72 ---------------------~~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~s~sv 128 (136)
...++.+...|+. +++++.-.....|+.++..++ ...+.+...|+..+..+-
T Consensus 137 ~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d-~~~~VR~~A~~aLg~~~~~~~----~~~~~L~~~L~D~~~~VR 209 (280)
T PRK09687 137 AFDKSTNVRFAVAFALSVINDEAAIPLLINLLKD-PNGDVRNWAAFALNSNKYDNP----DIREAFVAMLQDKNEEIR 209 (280)
T ss_pred hhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcC-CCHHHHHHHHHHHhcCCCCCH----HHHHHHHHHhcCCChHHH
Confidence 1235555555554 667777777777776654443 344555555555554433
No 20
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.45 E-value=0.0078 Score=41.37 Aligned_cols=57 Identities=21% Similarity=0.176 Sum_probs=49.0
Q ss_pred hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCch----hhHHHHHhhcCCCChhHHHHHHH
Q psy11028 2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR----PAFPRLKEKLEDPDSGVQSAAVN 58 (136)
Q Consensus 2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~----~~~~~l~~lL~D~d~~V~~aal~ 58 (136)
+-|.++++++++-||--|+-|++.+.+...+.+- +.++.+.+++.|.|++|-.++--
T Consensus 30 ~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~ 90 (97)
T PF12755_consen 30 PPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAAEL 90 (97)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHH
Confidence 4588999999999999999999999998776553 35788899999999999999843
No 21
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.43 E-value=0.037 Score=44.19 Aligned_cols=128 Identities=19% Similarity=0.278 Sum_probs=90.1
Q ss_pred hhcC-CCChHHHHHHHHHHHHHHhHCC---CCchh--hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCC--cchhhhHHH
Q psy11028 6 IYLT-STKPYLRKKAVLMMYKVFLKFP---DALRP--AFPRLKEKLEDPDSGVQSAAVNVVCELARKNP--KNYLSLAPV 77 (136)
Q Consensus 6 klL~-~s~~~VRKKA~l~~~rl~~~~P---~~v~~--~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p--~~~~~lvp~ 77 (136)
.+|+ +.+|+++.+|..++... ..+| +.+.+ .++.+.++|+++++.|-.-|+..+..++...+ ...+..++.
T Consensus 19 ~lL~~t~dp~i~e~al~al~n~-aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~ 97 (254)
T PF04826_consen 19 CLLESTEDPFIQEKALIALGNS-AAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQ 97 (254)
T ss_pred HHHhcCCChHHHHHHHHHHHhh-ccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Confidence 3444 57899999999888874 3344 34443 58999999999999999999988887765443 345567777
Q ss_pred HHHHhcc-CCChhHHHHHHHHhhhcCCCC--hHHHhhhHHHHHHHHhccchhhhhhhccc
Q psy11028 78 FFKLMTT-SSNNWMLIKIIKLFGALTPLE--PRLGKKLIEPLTNLIHRIISLSCWTGIKP 134 (136)
Q Consensus 78 lv~iL~~-v~~pWlqikiLk~L~~l~~~e--~~~~~~l~e~l~~iL~~~~s~sv~~~~k~ 134 (136)
+.+.... ..+-.+|..-||+|..|+-.+ ...-.+.+..+.++|.+.+...=..++|+
T Consensus 98 Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~ 157 (254)
T PF04826_consen 98 VCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKV 157 (254)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHH
Confidence 7775444 357789999999999998544 23333345556678887766554455553
No 22
>PRK09687 putative lyase; Provisional
Probab=96.32 E-value=0.057 Score=43.52 Aligned_cols=96 Identities=9% Similarity=0.014 Sum_probs=67.9
Q ss_pred hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHH
Q psy11028 2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKL 81 (136)
Q Consensus 2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~i 81 (136)
.+...+|.|.+..||..|+.++..+= . +..++.+.+++.|.|+.|=..++..+-++..... .-....|.+..+
T Consensus 26 ~~L~~~L~d~d~~vR~~A~~aL~~~~--~----~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~-~~~~a~~~L~~l 98 (280)
T PRK09687 26 DELFRLLDDHNSLKRISSIRVLQLRG--G----QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR-CQDNVFNILNNL 98 (280)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcC--c----chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-chHHHHHHHHHH
Confidence 45678899999999999999976431 1 2355667888999999999999988888754321 123456666666
Q ss_pred hccCCChhHHHHHHHHhhhcCCC
Q psy11028 82 MTTSSNNWMLIKIIKLFGALTPL 104 (136)
Q Consensus 82 L~~v~~pWlqikiLk~L~~l~~~ 104 (136)
+.+-++|...-.....|+.++..
T Consensus 99 ~~~D~d~~VR~~A~~aLG~~~~~ 121 (280)
T PRK09687 99 ALEDKSACVRASAINATGHRCKK 121 (280)
T ss_pred HhcCCCHHHHHHHHHHHhccccc
Confidence 55556666676677777766543
No 23
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=96.32 E-value=0.057 Score=49.87 Aligned_cols=91 Identities=22% Similarity=0.245 Sum_probs=69.6
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHh
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM 82 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL 82 (136)
++...|++.+|.||+.|+.++-++-. +...+.|.++|+|+|+.|=.+++..+.++....+. .+.+...|
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-----~~~L~~~L 693 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTP------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP-----APALRDHL 693 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcc------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-----hHHHHHHh
Confidence 56678899999999999999987641 33567788999999999999999999888654332 34566666
Q ss_pred ccCCChhHHHHHHHHhhhcCCCC
Q psy11028 83 TTSSNNWMLIKIIKLFGALTPLE 105 (136)
Q Consensus 83 ~~v~~pWlqikiLk~L~~l~~~e 105 (136)
.. ++|+.+...++.|..+...+
T Consensus 694 ~~-~d~~VR~~A~~aL~~~~~~~ 715 (897)
T PRK13800 694 GS-PDPVVRAAALDVLRALRAGD 715 (897)
T ss_pred cC-CCHHHHHHHHHHHHhhccCC
Confidence 65 78888888888777665443
No 24
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.23 E-value=0.071 Score=46.23 Aligned_cols=123 Identities=15% Similarity=0.188 Sum_probs=96.5
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHCCCC--c-h-hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh-----h
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDA--L-R-PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL-----S 73 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~--v-~-~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~-----~ 73 (136)
.|..++.+.+..|.+.|+-++.++....+.. + + +....+.+++...|..|-.-+..++.++++.+++.+. .
T Consensus 123 ~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sg 202 (503)
T PF10508_consen 123 LIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSG 202 (503)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhcc
Confidence 4678899999999999999999998765433 1 1 2378888888777888888999999999999987543 3
Q ss_pred hHHHHHHHhccCCChhHHHHHHHHhhhcCCCChH----HHhhhHHHHHHHHhccchh
Q psy11028 74 LAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPR----LGKKLIEPLTNLIHRIISL 126 (136)
Q Consensus 74 lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~----~~~~l~e~l~~iL~~~~s~ 126 (136)
+.+.+++-|++ .|.-+|...+.+|..++..+.. ....+.+.+.+.++.....
T Consensus 203 ll~~ll~eL~~-dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~d 258 (503)
T PF10508_consen 203 LLDLLLKELDS-DDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEED 258 (503)
T ss_pred HHHHHHHHhcC-ccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccC
Confidence 78888888888 9999999999999999874321 2344667788887766443
No 25
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.23 E-value=0.082 Score=35.22 Aligned_cols=92 Identities=17% Similarity=0.143 Sum_probs=72.2
Q ss_pred hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh-----hhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHh
Q psy11028 36 PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL-----SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGK 110 (136)
Q Consensus 36 ~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~-----~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~ 110 (136)
+.++.+.+.|.|.++.+...++..+..++..+|+... ..+|.+.++|.. ++|=++...+.+|+.++...+...+
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccCcHHHHH
Confidence 3678899999999999999999999999988765322 568899998887 7999999999999999877643222
Q ss_pred -----hhHHHHHHHHhccchhhh
Q psy11028 111 -----KLIEPLTNLIHRIISLSC 128 (136)
Q Consensus 111 -----~l~e~l~~iL~~~~s~sv 128 (136)
.+.+.+.+.++..+....
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~ 108 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQ 108 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHH
Confidence 357777888877654433
No 26
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=95.89 E-value=0.072 Score=36.24 Aligned_cols=67 Identities=19% Similarity=0.263 Sum_probs=58.2
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHCC-CC--chhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCc
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFP-DA--LRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK 69 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P-~~--v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~ 69 (136)
++.+.++++.+.||=-|..-+.++++... .. ++...+-+.+.|.|+|+=|-.+|+..+.+++..+|+
T Consensus 7 ~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 7 EALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 46678899999999999999999999876 22 223677888999999999999999999999999997
No 27
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.77 E-value=0.011 Score=31.92 Aligned_cols=28 Identities=14% Similarity=0.083 Sum_probs=23.1
Q ss_pred hhhhhhcCCCChHHHHHHHHHHHHHHhH
Q psy11028 2 LGYFIYLTSTKPYLRKKAVLMMYKVFLK 29 (136)
Q Consensus 2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~ 29 (136)
+-+.++++|+++.||+.|+.|+..+.+.
T Consensus 3 p~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 3 PILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 4577899999999999999999888764
No 28
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.53 E-value=0.014 Score=35.09 Aligned_cols=49 Identities=29% Similarity=0.435 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHHhHCCCCchh----hHHHHHhhcCCCChhHHHHHHHHHH
Q psy11028 13 PYLRKKAVLMMYKVFLKFPDALRP----AFPRLKEKLEDPDSGVQSAAVNVVC 61 (136)
Q Consensus 13 ~~VRKKA~l~~~rl~~~~P~~v~~----~~~~l~~lL~D~d~~V~~aal~l~~ 61 (136)
|.||..|+.++-++.+..|+..+. .++.+..+|+|.+..|-.++...+-
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg 53 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALG 53 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 579999999999887777776664 5788889999999999888876553
No 29
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=95.41 E-value=0.27 Score=37.20 Aligned_cols=114 Identities=16% Similarity=0.135 Sum_probs=77.2
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchh-hHHHH-------HhhcCCCChhH---HHHHHHHHHHHHhcCCcch
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRP-AFPRL-------KEKLEDPDSGV---QSAAVNVVCELARKNPKNY 71 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~-~~~~l-------~~lL~D~d~~V---~~aal~l~~~l~~~~p~~~ 71 (136)
-+.-|..++++.+|++|.-..-.+++++|+.++. +.+-+ +.+-.|...+. ..+.++.+.++.+.+.+.-
T Consensus 49 ~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R 128 (187)
T PF12830_consen 49 TLIALETSPNPSIRSRAYQLLKELHEKHESLVESRYSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSR 128 (187)
T ss_pred HhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhH
Confidence 3556778999999999999999999999998874 32332 23334444334 8889999999999776666
Q ss_pred hhhHHHHHHHhccC----------CChhHHHHHHHHhhhcCCCChHHHhhhHHHH
Q psy11028 72 LSLAPVFFKLMTTS----------SNNWMLIKIIKLFGALTPLEPRLGKKLIEPL 116 (136)
Q Consensus 72 ~~lvp~lv~iL~~v----------~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l 116 (136)
++++..+.+.+..- ..-.....+...|+.++-....+.--++..+
T Consensus 129 ~~Fl~~l~k~f~~~~~~~~~~~~~~~l~~~~Fla~nLA~l~y~~~~E~l~vi~~i 183 (187)
T PF12830_consen 129 RKFLKSLLKQFDFDLTKLSSESSPSDLDFLLFLAENLATLPYQTQDEVLYVIHHI 183 (187)
T ss_pred HHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Confidence 67888888877642 2234455666667777655444444444433
No 30
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.34 E-value=0.055 Score=34.82 Aligned_cols=78 Identities=21% Similarity=0.310 Sum_probs=61.0
Q ss_pred HHHHHhhc-CCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHhhhHHHH
Q psy11028 38 FPRLKEKL-EDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPL 116 (136)
Q Consensus 38 ~~~l~~lL-~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l 116 (136)
++.+.+.| .|+|+.|-..++.++.++.. ...+|.+.+.++. ++|-.+......|+.++. .+..+.+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~------~~~~~~L~~~l~d-~~~~vr~~a~~aL~~i~~------~~~~~~L 67 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD------PEAIPALIELLKD-EDPMVRRAAARALGRIGD------PEAIPAL 67 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH------HHHHHHHHHHHTS-SSHHHHHHHHHHHHCCHH------HHTHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC------HhHHHHHHHHHcC-CCHHHHHHHHHHHHHhCC------HHHHHHH
Confidence 35677777 89999999998888774321 2679999999965 899999999999998862 4688888
Q ss_pred HHHHhccchhhh
Q psy11028 117 TNLIHRIISLSC 128 (136)
Q Consensus 117 ~~iL~~~~s~sv 128 (136)
.+.+++.++..|
T Consensus 68 ~~~l~~~~~~~v 79 (88)
T PF13646_consen 68 IKLLQDDDDEVV 79 (88)
T ss_dssp HHHHTC-SSHHH
T ss_pred HHHHcCCCcHHH
Confidence 889988776554
No 31
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=95.26 E-value=0.064 Score=47.42 Aligned_cols=120 Identities=15% Similarity=0.256 Sum_probs=77.1
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhc
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMT 83 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~ 83 (136)
...|..+.+..||+-|+-.+-.+++-+||.+....+-|.++|...|+..+.++=..+.++.+.+|... +-.-+.+|+.
T Consensus 64 ~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~t--L~~lf~~i~~ 141 (556)
T PF05918_consen 64 QLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGT--LTGLFSQIES 141 (556)
T ss_dssp HHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHH-
T ss_pred HHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHH--HHHHHHHHHh
Confidence 35677889999999999999999999999999999999999999999999999999999999998632 2222233331
Q ss_pred -cCCChhHHHHHHHHhh----hcCCC----ChHHHhhhHHHHHHHHhccch
Q psy11028 84 -TSSNNWMLIKIIKLFG----ALTPL----EPRLGKKLIEPLTNLIHRIIS 125 (136)
Q Consensus 84 -~v~~pWlqikiLk~L~----~l~~~----e~~~~~~l~e~l~~iL~~~~s 125 (136)
...++-.--++|++++ .++++ ..+..+-+.+.+..+|+..++
T Consensus 142 ~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTa 192 (556)
T PF05918_consen 142 SKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQDVTA 192 (556)
T ss_dssp --HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT--H
T ss_pred cccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHhccH
Confidence 1246666677777763 22221 134456677778888876444
No 32
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.19 E-value=0.13 Score=39.18 Aligned_cols=97 Identities=13% Similarity=0.106 Sum_probs=60.6
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhh-HHHHHhhcCCCChhHHHHHHHHHHHHHhcCC---cch------h
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPA-FPRLKEKLEDPDSGVQSAAVNVVCELARKNP---KNY------L 72 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~-~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p---~~~------~ 72 (136)
-+.+.+.+++..||..|..|+.-+++..+ ..... .+.+.....++++.|=..++..+..+....+ ..+ .
T Consensus 98 ~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~ 176 (228)
T PF12348_consen 98 PLLKKLGDSKKFIREAANNALDAIIESCS-YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLK 176 (228)
T ss_dssp HHHHGGG---HHHHHHHHHHHHHHHTTS--H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHCC-cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHH
Confidence 46678889999999999999999999877 22334 7788889999999999999999999988777 222 2
Q ss_pred hhHHHHHHHhccCCChhHHHHHHHHhhhc
Q psy11028 73 SLAPVFFKLMTTSSNNWMLIKIIKLFGAL 101 (136)
Q Consensus 73 ~lvp~lv~iL~~v~~pWlqikiLk~L~~l 101 (136)
.+++.+.+.+.+ ++|=.--.--+.|..|
T Consensus 177 ~l~~~l~~~l~D-~~~~VR~~Ar~~~~~l 204 (228)
T PF12348_consen 177 QLVKALVKLLSD-ADPEVREAARECLWAL 204 (228)
T ss_dssp HHHHHHHHHHTS-S-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHHHHH
Confidence 344555555544 3444433334444433
No 33
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.19 E-value=0.31 Score=37.07 Aligned_cols=123 Identities=15% Similarity=0.126 Sum_probs=75.4
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCchh----hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHH
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRP----AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFF 79 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~----~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv 79 (136)
+.+.+++.+.-|-|.|+.++..++.....-++. +++.+.+.+.|+...+-.+|...+..+++.-+ ....+...+.
T Consensus 58 i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-~~~~~~~~~l 136 (228)
T PF12348_consen 58 IIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS-YSPKILLEIL 136 (228)
T ss_dssp HHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS--H--HHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-cHHHHHHHHH
Confidence 445677888889999999999999988776664 56788888899999999999999999999766 1123323333
Q ss_pred HHhccCCChhHHHHHHHHhhhcCCCC----hH-----HHhhhHHHHHHHHhccchhh
Q psy11028 80 KLMTTSSNNWMLIKIIKLFGALTPLE----PR-----LGKKLIEPLTNLIHRIISLS 127 (136)
Q Consensus 80 ~iL~~v~~pWlqikiLk~L~~l~~~e----~~-----~~~~l~e~l~~iL~~~~s~s 127 (136)
....+-.+|-.-...++.+..+-..- +. .-+.+.+.+...++.+++.+
T Consensus 137 ~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~V 193 (228)
T PF12348_consen 137 SQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEV 193 (228)
T ss_dssp HHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHH
Confidence 33334467777777777766553211 11 12456777777776666543
No 34
>KOG2160|consensus
Probab=95.12 E-value=0.24 Score=41.40 Aligned_cols=104 Identities=20% Similarity=0.271 Sum_probs=80.5
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchh-----hHHHHHhhcC-CCChhHHHHHHHHHHHHHhcCCc---chhh
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRP-----AFPRLKEKLE-DPDSGVQSAAVNVVCELARKNPK---NYLS 73 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~-----~~~~l~~lL~-D~d~~V~~aal~l~~~l~~~~p~---~~~~ 73 (136)
.+...++++++-+|.+|+-.+-...+.+|..-+. +.+++.+.|. |.+-.|-+.|+..+..+.++++. .|..
T Consensus 128 ~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~ 207 (342)
T KOG2160|consen 128 PLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLK 207 (342)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHh
Confidence 4566889999999999999999999999976653 5677877775 55667779999999999999985 4444
Q ss_pred hHH--HHHHHhcc-CCChhHHHHHHHHhhhcCCCCh
Q psy11028 74 LAP--VFFKLMTT-SSNNWMLIKIIKLFGALTPLEP 106 (136)
Q Consensus 74 lvp--~lv~iL~~-v~~pWlqikiLk~L~~l~~~e~ 106 (136)
+-+ -+...|.. -.+.-+|+|.+-+++.|...+.
T Consensus 208 ~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~ 243 (342)
T KOG2160|consen 208 LNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK 243 (342)
T ss_pred cCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh
Confidence 422 34444443 3688999999999998876554
No 35
>KOG1059|consensus
Probab=94.92 E-value=0.23 Score=45.21 Aligned_cols=111 Identities=17% Similarity=0.323 Sum_probs=82.3
Q ss_pred hcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhc-----------------CCc
Q psy11028 7 YLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARK-----------------NPK 69 (136)
Q Consensus 7 lL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~-----------------~p~ 69 (136)
++.++++..|=-+++|+.++...+|..|....+-+.+.|+|.|.|+=.=|+.++.+++.+ +++
T Consensus 307 fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~eIVk~LM~~~~~ae~t 386 (877)
T KOG1059|consen 307 FIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSKKNLMEIVKTLMKHVEKAEGT 386 (877)
T ss_pred hhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccch
Confidence 457899999999999999999999999999999999999999999999999999988654 233
Q ss_pred chh-hhHHHHHHHhcc------CCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHH
Q psy11028 70 NYL-SLAPVFFKLMTT------SSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLI 120 (136)
Q Consensus 70 ~~~-~lvp~lv~iL~~------v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL 120 (136)
.|+ +++..+++|=.. ..=.|..--+..+-+.-+.. ...+|-|++.++-
T Consensus 387 ~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~~~---~G~~I~eQi~Dv~ 441 (877)
T KOG1059|consen 387 NYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLEGTR---HGSLIAEQIIDVA 441 (877)
T ss_pred hHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccccc---hhhHHHHHHHHHh
Confidence 343 344444444442 35689887777755544432 2345555555554
No 36
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=94.69 E-value=0.38 Score=44.53 Aligned_cols=20 Identities=20% Similarity=0.142 Sum_probs=11.3
Q ss_pred hhcCCCChHHHHHHHHHHHH
Q psy11028 6 IYLTSTKPYLRKKAVLMMYK 25 (136)
Q Consensus 6 klL~~s~~~VRKKA~l~~~r 25 (136)
+.|.++++.||+-|+.++.+
T Consensus 721 ~~L~D~d~~VR~~Av~aL~~ 740 (897)
T PRK13800 721 AALGDPDHRVRIEAVRALVS 740 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhc
Confidence 44555666666655555554
No 37
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.66 E-value=0.32 Score=39.12 Aligned_cols=64 Identities=17% Similarity=0.214 Sum_probs=56.8
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCC
Q psy11028 5 FIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNP 68 (136)
Q Consensus 5 ~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p 68 (136)
...+.|+++.||+.|+-|+--.+..+.+....+++-+.+.+...+..|-..++..++++...++
T Consensus 33 ~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g 96 (298)
T PF12719_consen 33 LPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHG 96 (298)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Confidence 3456899999999999999999999999999988888888876799999999999999988664
No 38
>KOG0414|consensus
Probab=94.61 E-value=0.12 Score=49.02 Aligned_cols=80 Identities=21% Similarity=0.341 Sum_probs=68.0
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhc
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMT 83 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~ 83 (136)
..+.|.+.++.|||.|++.+.+++..+==-+......+...|+|.+.++-.-|=+.+.|++.+. ....++.|.+...|.
T Consensus 1003 Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~-n~iynlLPdil~~Ls 1081 (1251)
T KOG0414|consen 1003 LYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKG-NTIYNLLPDILSRLS 1081 (1251)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc-cchhhhchHHHHhhc
Confidence 3456789999999999999999999864455668899999999999999999999999998876 556678888888887
Q ss_pred c
Q psy11028 84 T 84 (136)
Q Consensus 84 ~ 84 (136)
+
T Consensus 1082 ~ 1082 (1251)
T KOG0414|consen 1082 N 1082 (1251)
T ss_pred c
Confidence 5
No 39
>KOG1062|consensus
Probab=94.31 E-value=0.12 Score=47.38 Aligned_cols=129 Identities=15% Similarity=0.120 Sum_probs=106.8
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHh
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM 82 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL 82 (136)
|-.||..+++-.-|+-..+++.=+....-|+.--....+++=|+.+|.=|+..|++.+..++ +|+..+.+.|.+.++|
T Consensus 74 eclKLias~~f~dKRiGYLaamLlLdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i~--s~EmardlapeVe~Ll 151 (866)
T KOG1062|consen 74 ECLKLIASDNFLDKRIGYLAAMLLLDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNIC--SPEMARDLAPEVERLL 151 (866)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHhccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccC--CHHHhHHhhHHHHHHH
Confidence 44677788888888888888887777777777777788888889999999999988877665 4678889999999999
Q ss_pred ccCCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccchhhhhhhccc
Q psy11028 83 TTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLSCWTGIKP 134 (136)
Q Consensus 83 ~~v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~s~sv~~~~k~ 134 (136)
+. ++|++-=|-.-....+-...|...+.+.......|...+-.++++++++
T Consensus 152 ~~-~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l 202 (866)
T KOG1062|consen 152 QH-RDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHL 202 (866)
T ss_pred hC-CCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHH
Confidence 99 8999999988888888888898899999999999888776666666654
No 40
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=94.31 E-value=0.86 Score=36.57 Aligned_cols=121 Identities=12% Similarity=0.146 Sum_probs=80.9
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCc----------hhhHHHHHhhcC--------CCChhHHHHHHHHHHHHH
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDAL----------RPAFPRLKEKLE--------DPDSGVQSAAVNVVCELA 64 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v----------~~~~~~l~~lL~--------D~d~~V~~aal~l~~~l~ 64 (136)
=+..++.+..+.+|-+++.|+.++..+.|+.. +.+.+.+...|. |....++.++..++..++
T Consensus 123 ~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~ 202 (282)
T PF10521_consen 123 PILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALLSLL 202 (282)
T ss_pred hHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHH
Confidence 36778899999999999999999999888655 225678888887 888999999999999997
Q ss_pred hcC---C-cchhhhH-HHHHH-Hhcc---CCC---hhHHHHHHH----HhhhcCCCChHHHhhhHHHHHHHHhcc
Q psy11028 65 RKN---P-KNYLSLA-PVFFK-LMTT---SSN---NWMLIKIIK----LFGALTPLEPRLGKKLIEPLTNLIHRI 123 (136)
Q Consensus 65 ~~~---p-~~~~~lv-p~lv~-iL~~---v~~---pWlqikiLk----~L~~l~~~e~~~~~~l~e~l~~iL~~~ 123 (136)
+.. + ..+.... -.+-+ ||.+ ... |=+..-+++ ++..+|..--+--++++..+.+++++-
T Consensus 203 ~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 203 KTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENP 277 (282)
T ss_pred HhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 742 1 1222222 22223 4443 233 444444444 444556555555667777777766543
No 41
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=94.06 E-value=0.12 Score=40.79 Aligned_cols=59 Identities=15% Similarity=0.196 Sum_probs=46.1
Q ss_pred hcCCCChHHHHHHHHHHHHHHhHCCCCc------h-------hhHHHHHhhcCCCChhHHHHHHHHHHHHHh
Q psy11028 7 YLTSTKPYLRKKAVLMMYKVFLKFPDAL------R-------PAFPRLKEKLEDPDSGVQSAAVNVVCELAR 65 (136)
Q Consensus 7 lL~~s~~~VRKKA~l~~~rl~~~~P~~v------~-------~~~~~l~~lL~D~d~~V~~aal~l~~~l~~ 65 (136)
||++.++.|-|+|+.|+..+|+..=+.+ + .+.+.+.+++++.++||=.+++-.+..+.-
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl 72 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVIL 72 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 6889999999999999999988632222 2 245678888899999999999999888754
No 42
>KOG1060|consensus
Probab=94.02 E-value=0.59 Score=43.09 Aligned_cols=122 Identities=15% Similarity=0.224 Sum_probs=85.5
Q ss_pred hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHH
Q psy11028 2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKL 81 (136)
Q Consensus 2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~i 81 (136)
++|.|...+.+.-|||=-.+=+.|.-+..||+.---+..+++.|.|+|+-+=++|+.++..|--. -++|-...-
T Consensus 74 p~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~L~DpN~LiRasALRvlSsIRvp------~IaPI~llA 147 (968)
T KOG1060|consen 74 PAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKALKDPNQLIRASALRVLSSIRVP------MIAPIMLLA 147 (968)
T ss_pred HHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhhhcCCcHHHHHHHHHHHHhcchh------hHHHHHHHH
Confidence 68999999999999999999999999999999888899999999999999999999888665111 122322222
Q ss_pred hcc---CCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccchhhhh
Q psy11028 82 MTT---SSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLSCW 129 (136)
Q Consensus 82 L~~---v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~s~sv~ 129 (136)
.+. -++|+.-=-.=-.+..|-..+++...+|.|.+..+|......+|=
T Consensus 148 Ik~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LLaD~splVvg 198 (968)
T KOG1060|consen 148 IKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLLADRSPLVVG 198 (968)
T ss_pred HHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHhcCCCCcchh
Confidence 221 144443322222333344445555568888888888777665543
No 43
>KOG1020|consensus
Probab=93.95 E-value=0.47 Score=46.25 Aligned_cols=115 Identities=17% Similarity=0.311 Sum_probs=80.5
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCch--hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHH
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR--PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKL 81 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~--~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~i 81 (136)
+...|..+.+.+|=||.-|+.-+...+|..+. +....+...++|+..+|==||+-++=...-.+|+ +++..|..
T Consensus 821 Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e----~~~qyY~~ 896 (1692)
T KOG1020|consen 821 ILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPE----LIFQYYDQ 896 (1692)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHH----HHHHHHHH
Confidence 45567889999999999999999999999876 4778899999999999999999888777777775 44444443
Q ss_pred hc-cCCChhHHH--HHHHHhhhcCCCChHHHhhhHHHHHHHHhcc
Q psy11028 82 MT-TSSNNWMLI--KIIKLFGALTPLEPRLGKKLIEPLTNLIHRI 123 (136)
Q Consensus 82 L~-~v~~pWlqi--kiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~ 123 (136)
+. ++.|+=..| +.+|+++-.+...|.. .++.|....+|.+.
T Consensus 897 i~erIlDtgvsVRKRvIKIlrdic~e~pdf-~~i~~~cakmlrRv 940 (1692)
T KOG1020|consen 897 IIERILDTGVSVRKRVIKILRDICEETPDF-SKIVDMCAKMLRRV 940 (1692)
T ss_pred HHhhcCCCchhHHHHHHHHHHHHHHhCCCh-hhHHHHHHHHHHHh
Confidence 32 334444433 4566666665443332 24555555555443
No 44
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=93.87 E-value=0.8 Score=46.19 Aligned_cols=122 Identities=16% Similarity=0.151 Sum_probs=96.1
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCC-cc--h---
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNP-KN--Y--- 71 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p-~~--~--- 71 (136)
-+.+||.|+++.+||.|+-++..++.-.++..+ +.++.+..+|.+.+..+--.+...+..+..... ++ +
T Consensus 613 ~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~ 692 (2102)
T PLN03200 613 TLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAA 692 (2102)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 356789999999999999999999988887543 368899999999999999988888888876332 22 1
Q ss_pred hhhHHHHHHHhccCCChhHHHHHHHHhhhcCCCC-hH---HHhhhHHHHHHHHhccch
Q psy11028 72 LSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLE-PR---LGKKLIEPLTNLIHRIIS 125 (136)
Q Consensus 72 ~~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e-~~---~~~~l~e~l~~iL~~~~s 125 (136)
...+|+|+++|+. +++=+.-..+..|+.+..+. .+ .....++.+.++|+..+.
T Consensus 693 ~GaV~pL~~LL~~-~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~ 749 (2102)
T PLN03200 693 EDAIKPLIKLAKS-SSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTL 749 (2102)
T ss_pred cCCHHHHHHHHhC-CChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCCh
Confidence 2369999999976 78888899999999887543 22 235668889999987665
No 45
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=93.23 E-value=0.54 Score=35.53 Aligned_cols=70 Identities=20% Similarity=0.254 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHHHHhHCCCCch--hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch----hhhHHHHHHHhc
Q psy11028 13 PYLRKKAVLMMYKVFLKFPDALR--PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY----LSLAPVFFKLMT 83 (136)
Q Consensus 13 ~~VRKKA~l~~~rl~~~~P~~v~--~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~----~~lvp~lv~iL~ 83 (136)
--+||-|.-|+|-++...++.+. .|.+++...|.| ++.+-.-+...+.-++..+|... ..++.++-..|+
T Consensus 41 LelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~ 116 (169)
T PF08623_consen 41 LELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLS 116 (169)
T ss_dssp GHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Confidence 35899999999999999888776 489999999999 99999999999999999999743 356777777665
No 46
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=93.02 E-value=1.3 Score=44.74 Aligned_cols=121 Identities=11% Similarity=0.009 Sum_probs=87.0
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch-----hh
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY-----LS 73 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~-----~~ 73 (136)
...||+..+.-++..|+.|+.-+....++..+ ..++.+.++|...+..+...++..+--++..+++.- -.
T Consensus 409 LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaG 488 (2102)
T PLN03200 409 LVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAG 488 (2102)
T ss_pred hhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence 34567778899999999999988887776544 268999999999999999999988888887766532 25
Q ss_pred hHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHh-----hhHHHHHHHHhccch
Q psy11028 74 LAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGK-----KLIEPLTNLIHRIIS 125 (136)
Q Consensus 74 lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~-----~l~e~l~~iL~~~~s 125 (136)
.+|.|+++|.. +++=.|-.-.-.+..++..++.... ..++.+.++|++.+.
T Consensus 489 aIP~LV~LL~s-~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~ 544 (2102)
T PLN03200 489 GIPPLVQLLET-GSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGP 544 (2102)
T ss_pred CHHHHHHHHcC-CCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCH
Confidence 69999999974 5666666666666666654432222 234566666665543
No 47
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=92.55 E-value=2.2 Score=30.42 Aligned_cols=85 Identities=15% Similarity=0.149 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh------hhHHHHHHHhcc--CCChh
Q psy11028 18 KAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL------SLAPVFFKLMTT--SSNNW 89 (136)
Q Consensus 18 KA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~------~lvp~lv~iL~~--v~~pW 89 (136)
.+++.+-=+++..++...+....|++.|..+||-|..-|+.++-.+.++-...|. ++...+++++.+ ..++=
T Consensus 19 ~~il~icd~I~~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~ 98 (133)
T cd03561 19 ALNLELCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPK 98 (133)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHH
Confidence 3445555556666666677889999999999999999999999998888777663 344557777765 46777
Q ss_pred HHHHHHHHhhhcC
Q psy11028 90 MLIKIIKLFGALT 102 (136)
Q Consensus 90 lqikiLk~L~~l~ 102 (136)
.+-|++.+++..+
T Consensus 99 Vk~kil~ll~~W~ 111 (133)
T cd03561 99 VREKALELILAWS 111 (133)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887654
No 48
>KOG0166|consensus
Probab=92.50 E-value=0.83 Score=40.15 Aligned_cols=119 Identities=16% Similarity=0.239 Sum_probs=89.1
Q ss_pred hhhhcCCCCh-HHHHHHHHHHHHHHhHC-C----CCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh-----
Q psy11028 4 YFIYLTSTKP-YLRKKAVLMMYKVFLKF-P----DALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL----- 72 (136)
Q Consensus 4 V~klL~~s~~-~VRKKA~l~~~rl~~~~-P----~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~----- 72 (136)
...+++.+++ ...+.|.-++..+++.- | +.+....+.+..+|.+.|+-|+.-|.-.+.+++...++...
T Consensus 199 Ll~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~ 278 (514)
T KOG0166|consen 199 LLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDA 278 (514)
T ss_pred HHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHc
Confidence 3455555555 68889999999999875 5 34456789999999999999999999999999987665432
Q ss_pred hhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHH-----HhhhHHHHHHHHhcc
Q psy11028 73 SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRL-----GKKLIEPLTNLIHRI 123 (136)
Q Consensus 73 ~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~-----~~~l~e~l~~iL~~~ 123 (136)
..+|.++.+|.. +.+=.++-.||.++....++... .....+.+..++.++
T Consensus 279 gvv~~LV~lL~~-~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s 333 (514)
T KOG0166|consen 279 GVVPRLVDLLGH-SSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSS 333 (514)
T ss_pred cchHHHHHHHcC-CCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccC
Confidence 469999999987 56666677888888877665432 334556677777643
No 49
>KOG0213|consensus
Probab=92.45 E-value=1.1 Score=41.49 Aligned_cols=99 Identities=12% Similarity=0.132 Sum_probs=74.1
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchh-hHHH----HHhhcCCCChhHHHHHHHHHHHHHhcC-----Ccchh
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRP-AFPR----LKEKLEDPDSGVQSAAVNVVCELARKN-----PKNYL 72 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~-~~~~----l~~lL~D~d~~V~~aal~l~~~l~~~~-----p~~~~ 72 (136)
++...|++..|.||+.|+-.+.++-..--.+-+. ...+ +-+-|.+.+|-|+.+.+..++.|.... -.+.+
T Consensus 803 tiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~ 882 (1172)
T KOG0213|consen 803 TILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIK 882 (1172)
T ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChh
Confidence 5778999999999999998888776554444332 2333 555667899999999999999998754 23567
Q ss_pred hhHHHHHHHhccCCChhHHHHHHHHhhhcC
Q psy11028 73 SLAPVFFKLMTTSSNNWMLIKIIKLFGALT 102 (136)
Q Consensus 73 ~lvp~lv~iL~~v~~pWlqikiLk~L~~l~ 102 (136)
.+.|.+.-||++ ...=.|...+++++..+
T Consensus 883 dllPrltPILkn-rheKVqen~IdLvg~Ia 911 (1172)
T KOG0213|consen 883 DLLPRLTPILKN-RHEKVQENCIDLVGTIA 911 (1172)
T ss_pred hhcccchHhhhh-hHHHHHHHHHHHHHHHH
Confidence 899999999997 45556666666666665
No 50
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=92.45 E-value=3.1 Score=30.35 Aligned_cols=74 Identities=14% Similarity=0.168 Sum_probs=60.4
Q ss_pred HCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh------hhHHHHHHHhccCCChhHHHHHHHHhhhcC
Q psy11028 29 KFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL------SLAPVFFKLMTTSSNNWMLIKIIKLFGALT 102 (136)
Q Consensus 29 ~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~------~lvp~lv~iL~~v~~pWlqikiLk~L~~l~ 102 (136)
..++...+.+..|++.|.++|+-|..-|+.++..++++-...|. .|...+++++..-.++=.+-|+|.+++..+
T Consensus 30 ~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 30 SDENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred cCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 34444456778899999999999999999999999888776553 567788888887678899999999998775
No 51
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=92.08 E-value=0.63 Score=34.51 Aligned_cols=70 Identities=17% Similarity=0.296 Sum_probs=58.6
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhh
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSL 74 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~l 74 (136)
+.+...+.++++|+-|+.++.+.+.+ .+-.+.+.+.+...+.|.+.-|--|.-..+.++.+++|+.-..+
T Consensus 110 ~~~w~~s~~~~~rR~~~~~~~~~~~~-~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~ 179 (197)
T cd06561 110 LEEWAKSENEWVRRAAIVLLLRLIKK-ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAF 179 (197)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 45667899999999999999999988 22355578888999999999999999999999999998754443
No 52
>KOG2171|consensus
Probab=92.07 E-value=2.1 Score=40.69 Aligned_cols=122 Identities=17% Similarity=0.270 Sum_probs=86.8
Q ss_pred CCCChHHHHHHHHHHHHHHhH-CCCCchhhHHHHHhhc-----CCCChhHHHHHHHHHHHHHhcC-CcchhhhHHHHHHH
Q psy11028 9 TSTKPYLRKKAVLMMYKVFLK-FPDALRPAFPRLKEKL-----EDPDSGVQSAAVNVVCELARKN-PKNYLSLAPVFFKL 81 (136)
Q Consensus 9 ~~s~~~VRKKA~l~~~rl~~~-~P~~v~~~~~~l~~lL-----~D~d~~V~~aal~l~~~l~~~~-p~~~~~lvp~lv~i 81 (136)
++.+|-+|+-|+.-+.|++-+ .+.+-.+....+++.| .++.++|=.+..-++-++++.. |+.|.++.+-+++-
T Consensus 47 ~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~ 126 (1075)
T KOG2171|consen 47 TSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQS 126 (1075)
T ss_pred cCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 468999999999999988855 4444444444444433 6789999999999999999976 66899999999999
Q ss_pred hccCCChhHHHHHHHHhhhcCC----CChHHHhhhHHHHHHHHhccchhhhhhh
Q psy11028 82 MTTSSNNWMLIKIIKLFGALTP----LEPRLGKKLIEPLTNLIHRIISLSCWTG 131 (136)
Q Consensus 82 L~~v~~pWlqikiLk~L~~l~~----~e~~~~~~l~e~l~~iL~~~~s~sv~~~ 131 (136)
.++ ++|=++=--+.+|..++. .+..--..+...+.+-++..++.+-.++
T Consensus 127 ~~S-~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a 179 (1075)
T KOG2171|consen 127 TKS-PNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAA 179 (1075)
T ss_pred hcC-CCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHH
Confidence 987 566666666677776653 2222233566666666666666643443
No 53
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=92.06 E-value=2.4 Score=32.44 Aligned_cols=66 Identities=18% Similarity=0.171 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhH-CCCCchh----hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHh
Q psy11028 17 KKAVLMMYKVFLK-FPDALRP----AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM 82 (136)
Q Consensus 17 KKA~l~~~rl~~~-~P~~v~~----~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL 82 (136)
==|...+.-+.+. .++.+-+ .+..+++.|+.+|+.|+.+++.++..++...+..=..++|.+-++|
T Consensus 56 flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLL 126 (183)
T PF10274_consen 56 FLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLL 126 (183)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3466666777777 6665443 5677899999999999999999999998877654344555544443
No 54
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=91.55 E-value=1.6 Score=32.29 Aligned_cols=71 Identities=18% Similarity=0.109 Sum_probs=52.3
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHC-CCCc-h---hhHHHHHhhcCC-CChhHHHHHHHHHHHHHh---cCCcchhh
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKF-PDAL-R---PAFPRLKEKLED-PDSGVQSAAVNVVCELAR---KNPKNYLS 73 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~-P~~v-~---~~~~~l~~lL~D-~d~~V~~aal~l~~~l~~---~~p~~~~~ 73 (136)
-+.++|++++++-|=.++.-+.-.++.+ +|.+ + .|+..+.+.|.. .++.+..+++..+..+.. ..|+.-++
T Consensus 29 ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Re 108 (165)
T PF08167_consen 29 RINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTRE 108 (165)
T ss_pred HHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHH
Confidence 3678899999999988888878888887 7877 3 377888888876 456667777777766644 55665443
No 55
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=91.47 E-value=0.15 Score=38.39 Aligned_cols=69 Identities=20% Similarity=0.338 Sum_probs=56.0
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhh
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSL 74 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~l 74 (136)
+.+.+++.++++|+-|+.++.+.+++ +-.+.+.+.+...+.|++.-|-.|.--++.++++.+|+.-..+
T Consensus 125 ~~~W~~s~~~w~rR~~~v~~~~~~~~--~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~ 193 (213)
T PF08713_consen 125 LEKWAKSDNEWVRRAAIVMLLRYIRK--EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEF 193 (213)
T ss_dssp HHHHHHCSSHHHHHHHHHCTTTHGGG--CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 44566899999999999999998888 4445677888889999999999999999999999999754433
No 56
>KOG2171|consensus
Probab=91.15 E-value=1.7 Score=41.24 Aligned_cols=124 Identities=15% Similarity=0.140 Sum_probs=88.4
Q ss_pred hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCch-hhH----HHHHhhcCCC-ChhHHHHHHHHHHHHHhcCCc-chhhh
Q psy11028 2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-PAF----PRLKEKLEDP-DSGVQSAAVNVVCELARKNPK-NYLSL 74 (136)
Q Consensus 2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-~~~----~~l~~lL~D~-d~~V~~aal~l~~~l~~~~p~-~~~~l 74 (136)
.-|...|++++|-||--|+.|+-.+-.-.+.-++ ... +-+...++|. ++.|-..|.+.+....+..+. ...+.
T Consensus 392 ~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pY 471 (1075)
T KOG2171|consen 392 PIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPY 471 (1075)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 4688899999999999999999988765444443 233 3455555654 779999999999999888874 33333
Q ss_pred HHH----HHHHhccCCChhHHHHHHHHhhhcCCC--C--hHHHhhhHHHHHHHHhccch
Q psy11028 75 APV----FFKLMTTSSNNWMLIKIIKLFGALTPL--E--PRLGKKLIEPLTNLIHRIIS 125 (136)
Q Consensus 75 vp~----lv~iL~~v~~pWlqikiLk~L~~l~~~--e--~~~~~~l~e~l~~iL~~~~s 125 (136)
.|. ....|.+.+.|-.|-..+-.++.-+.. + ..-.+.+.+.+.++|++++.
T Consensus 472 Ld~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~ 530 (1075)
T KOG2171|consen 472 LDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADD 530 (1075)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCc
Confidence 333 455666778999999999888876532 1 13356677778888888874
No 57
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=91.02 E-value=1.5 Score=32.55 Aligned_cols=75 Identities=19% Similarity=0.297 Sum_probs=57.2
Q ss_pred hhc-CCCChHHHHHHHHHHHHHHh---HCCCCchh--------hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhh
Q psy11028 6 IYL-TSTKPYLRKKAVLMMYKVFL---KFPDALRP--------AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLS 73 (136)
Q Consensus 6 klL-~~s~~~VRKKA~l~~~rl~~---~~P~~v~~--------~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~ 73 (136)
+.| ++..+.+++-|+.++.+++. .+|++... +++.+.+++++ ..+...++.++..+...+|..|++
T Consensus 74 ~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp 151 (165)
T PF08167_consen 74 SILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRP 151 (165)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccc
Confidence 344 35778889999999999995 47776643 34445555554 788889999999999999999999
Q ss_pred hHHHHHHHh
Q psy11028 74 LAPVFFKLM 82 (136)
Q Consensus 74 lvp~lv~iL 82 (136)
+..++-..+
T Consensus 152 ~~~ki~~~l 160 (165)
T PF08167_consen 152 FANKIESAL 160 (165)
T ss_pred hHHHHHHHH
Confidence 888776654
No 58
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=90.89 E-value=1.9 Score=39.24 Aligned_cols=82 Identities=15% Similarity=0.202 Sum_probs=59.9
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchh-hH----HHHHhhcCCCChhHHHHHHHHHHHHHhcCC-c----chh
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRP-AF----PRLKEKLEDPDSGVQSAAVNVVCELARKNP-K----NYL 72 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~-~~----~~l~~lL~D~d~~V~~aal~l~~~l~~~~p-~----~~~ 72 (136)
++.++|+|..|.||..|+-.+..+...--.+-+. .. ..+-+-|.+.+|-|+.+.+..++.|..... + +..
T Consensus 608 tiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~ 687 (975)
T COG5181 608 TILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPIS 687 (975)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchh
Confidence 5789999999999999987766555443333321 22 335555677899999999999999966331 2 456
Q ss_pred hhHHHHHHHhcc
Q psy11028 73 SLAPVFFKLMTT 84 (136)
Q Consensus 73 ~lvp~lv~iL~~ 84 (136)
.+.|.+.-||++
T Consensus 688 ~ilP~ltPILrn 699 (975)
T COG5181 688 GILPSLTPILRN 699 (975)
T ss_pred hccccccHhhhh
Confidence 789999999985
No 59
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=90.69 E-value=1.7 Score=35.13 Aligned_cols=120 Identities=18% Similarity=0.232 Sum_probs=69.3
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHhHCCCCchh--------hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCC--cch--h
Q psy11028 5 FIYLTSTKPYLRKKAVLMMYKVFLKFPDALRP--------AFPRLKEKLEDPDSGVQSAAVNVVCELARKNP--KNY--L 72 (136)
Q Consensus 5 ~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~--------~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p--~~~--~ 72 (136)
.+++++++.++.-+|+..+.++....+..-.. +++.+.+.+...+.++...++.++.++.+..+ ..| .
T Consensus 111 l~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~ 190 (312)
T PF03224_consen 111 LKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKS 190 (312)
T ss_dssp HHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhc
Confidence 45788999999999999999999988865443 44555555555677888999999999986443 233 3
Q ss_pred hhHHHHHHHh------ccCCChhHHHHHHHHhhhcCCCChH----HHhhhHHHHHHHHhccc
Q psy11028 73 SLAPVFFKLM------TTSSNNWMLIKIIKLFGALTPLEPR----LGKKLIEPLTNLIHRII 124 (136)
Q Consensus 73 ~lvp~lv~iL------~~v~~pWlqikiLk~L~~l~~~e~~----~~~~l~e~l~~iL~~~~ 124 (136)
..++.+.++| .+..++=+|=..+-++=.|.-.+.- ..+.++..+.++++.+.
T Consensus 191 ~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~ 252 (312)
T PF03224_consen 191 NGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSI 252 (312)
T ss_dssp HHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--
T ss_pred CcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcc
Confidence 5688899999 3444555555555555444433211 11224555555555443
No 60
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=90.10 E-value=4.1 Score=37.51 Aligned_cols=114 Identities=18% Similarity=0.183 Sum_probs=80.9
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhh-HHHHHHHh
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSL-APVFFKLM 82 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~l-vp~lv~iL 82 (136)
+++=++|+||++|=-|.-.+-.+ ..+++++.+++-+++.+.|+++-|=-+|.-.+..+-+.+++.|.+. .-.+.+-|
T Consensus 97 i~kDl~d~N~~iR~~AlR~ls~l--~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l 174 (757)
T COG5096 97 IQKDLQDPNEEIRGFALRTLSLL--RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKEL 174 (757)
T ss_pred HHhhccCCCHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHH
Confidence 55667899999997776555432 4568888899999999999999999999989999999999887765 33333333
Q ss_pred ccCCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhc
Q psy11028 83 TTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHR 122 (136)
Q Consensus 83 ~~v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~ 122 (136)
-.-++|=....-+..|..+-+. .++.....+...+.+
T Consensus 175 ~~D~dP~Vi~nAl~sl~~i~~e---~a~~~~~~~~~~i~~ 211 (757)
T COG5096 175 VADSDPIVIANALASLAEIDPE---LAHGYSLEVILRIPQ 211 (757)
T ss_pred hhCCCchHHHHHHHHHHHhchh---hhhhHHHHHHHHhhh
Confidence 3346777777777666666554 234444444444444
No 61
>KOG0166|consensus
Probab=89.72 E-value=4.6 Score=35.60 Aligned_cols=128 Identities=19% Similarity=0.228 Sum_probs=95.0
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhcCCCCh-hHHHHHHHHHHHHHh-cCCcc----hhh
Q psy11028 5 FIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPDS-GVQSAAVNVVCELAR-KNPKN----YLS 73 (136)
Q Consensus 5 ~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL~D~d~-~V~~aal~l~~~l~~-~~p~~----~~~ 73 (136)
.+|+.++++.||-.|+-|+-.+--..|++=. ...+.+..++...+. +.+-.++-++.-+|+ ++|.+ -..
T Consensus 158 i~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~ 237 (514)
T KOG0166|consen 158 IQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAP 237 (514)
T ss_pred HHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHH
Confidence 5788999999999999999998888876432 256778888877766 677777777788887 45653 345
Q ss_pred hHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHh-----hhHHHHHHHHhccchhhhhhhcc
Q psy11028 74 LAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGK-----KLIEPLTNLIHRIISLSCWTGIK 133 (136)
Q Consensus 74 lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~-----~l~e~l~~iL~~~~s~sv~~~~k 133 (136)
..|.+...|.. .|+=.+.-..-.+++|..+.+...+ .....+.++|.+.+-.++.-|++
T Consensus 238 iLp~L~~ll~~-~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLR 301 (514)
T KOG0166|consen 238 ILPALLRLLHS-TDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALR 301 (514)
T ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHh
Confidence 67777777776 6888888888889988855443333 45567888888888766655554
No 62
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=89.64 E-value=5.6 Score=28.39 Aligned_cols=81 Identities=15% Similarity=0.226 Sum_probs=60.9
Q ss_pred HHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch------hhhHHHHHHHhccC-CChhHHHHH
Q psy11028 22 MMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY------LSLAPVFFKLMTTS-SNNWMLIKI 94 (136)
Q Consensus 22 ~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~------~~lvp~lv~iL~~v-~~pWlqiki 94 (136)
-+-=+++..++...+....+++.|.++||-|..-|+.++-.+.++-...| ++|...+++++++- +.|..+-|+
T Consensus 23 ~icD~i~~~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~ki 102 (133)
T smart00288 23 EICDLINSTPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRI 102 (133)
T ss_pred HHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 33334455555566788889999999999999999999999988866554 24666777777753 456789999
Q ss_pred HHHhhhcC
Q psy11028 95 IKLFGALT 102 (136)
Q Consensus 95 Lk~L~~l~ 102 (136)
+.++...+
T Consensus 103 l~li~~W~ 110 (133)
T smart00288 103 LELIQEWA 110 (133)
T ss_pred HHHHHHHH
Confidence 99988654
No 63
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=89.34 E-value=0.74 Score=26.69 Aligned_cols=39 Identities=23% Similarity=0.340 Sum_probs=32.9
Q ss_pred HHHHHHhHCCCCch--hhHHHHHhhcCCCChhHHHHHHHHH
Q psy11028 22 MMYKVFLKFPDALR--PAFPRLKEKLEDPDSGVQSAAVNVV 60 (136)
Q Consensus 22 ~~~rl~~~~P~~v~--~~~~~l~~lL~D~d~~V~~aal~l~ 60 (136)
|+..+..++|+++. ...+.+.+.|.|++++|=-|++.++
T Consensus 2 ~l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 2 ALSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 45678889999987 4789999999999999999988653
No 64
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=89.20 E-value=1 Score=23.98 Aligned_cols=29 Identities=31% Similarity=0.494 Sum_probs=24.6
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHHhc
Q psy11028 38 FPRLKEKLEDPDSGVQSAAVNVVCELARK 66 (136)
Q Consensus 38 ~~~l~~lL~D~d~~V~~aal~l~~~l~~~ 66 (136)
++.+.++++|+++.|=.+|+..+.++++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 57889999999999999999999888763
No 65
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=89.20 E-value=5.9 Score=28.80 Aligned_cols=80 Identities=19% Similarity=0.256 Sum_probs=61.5
Q ss_pred HHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch------hhhHHHHHHHhcc-----CCChhHH
Q psy11028 23 MYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY------LSLAPVFFKLMTT-----SSNNWML 91 (136)
Q Consensus 23 ~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~------~~lvp~lv~iL~~-----v~~pWlq 91 (136)
+-=++...|+...+.+..+++.|.++|+-|..-|++++-.+.++=...| +.|...+++++.. -+++=.+
T Consensus 25 icD~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk 104 (139)
T cd03567 25 FCEQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVK 104 (139)
T ss_pred HHHHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHH
Confidence 3334455666556678889999999999999999999999888766655 3567788888852 3578889
Q ss_pred HHHHHHhhhcC
Q psy11028 92 IKIIKLFGALT 102 (136)
Q Consensus 92 ikiLk~L~~l~ 102 (136)
-|+|.++..-+
T Consensus 105 ~kil~li~~W~ 115 (139)
T cd03567 105 TKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHH
Confidence 99999988665
No 66
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=89.17 E-value=4.6 Score=37.38 Aligned_cols=116 Identities=18% Similarity=0.227 Sum_probs=83.8
Q ss_pred hhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhc--
Q psy11028 6 IYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMT-- 83 (136)
Q Consensus 6 klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~-- 83 (136)
+.|.+.+..|||.|.|.++-++...-=-+..-.+++..+|.|+|.++---+=..++++++++-..|-.++.-+-.+=.
T Consensus 978 rrL~De~~~V~rtclmti~fLilagq~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdNt~yn~fidifs~ls~~a 1057 (1128)
T COG5098 978 RRLGDEDADVRRTCLMTIHFLILAGQLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDNTMYNGFIDIFSTLSSDA 1057 (1128)
T ss_pred HHhcchhhHHHHHHHHHHHHHHHccceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcccchhhhhHHHHHHcCchh
Confidence 456788999999999999988888766677788999999999999999999999999999887766655543322211
Q ss_pred -cCCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccc
Q psy11028 84 -TSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRII 124 (136)
Q Consensus 84 -~v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~ 124 (136)
.-.-|| -+|+++|..|-..| |-.+++-|.+.--+.+.+
T Consensus 1058 e~g~e~f--k~II~FLt~fI~ke-rh~kql~E~L~~rl~rc~ 1096 (1128)
T COG5098 1058 ENGQEPF--KLIIGFLTDFISKE-RHQKQLKESLFLRLLRCN 1096 (1128)
T ss_pred hcCCCcH--HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhh
Confidence 113443 46788888777654 233456666655554444
No 67
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=89.01 E-value=8.5 Score=29.31 Aligned_cols=115 Identities=17% Similarity=0.212 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHhH-CCCCchhh----------------HHHHHhhcCCCChhHHHHHHHHHHHHHhcC----------
Q psy11028 15 LRKKAVLMMYKVFLK-FPDALRPA----------------FPRLKEKLEDPDSGVQSAAVNVVCELARKN---------- 67 (136)
Q Consensus 15 VRKKA~l~~~rl~~~-~P~~v~~~----------------~~~l~~lL~D~d~~V~~aal~l~~~l~~~~---------- 67 (136)
||.-|..|+.-+.+. +|-.+-.+ ..-+.-++.|+++.|=.+|++++..+.+..
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 788999999999888 54333322 222455678999999999999998884431
Q ss_pred --C-cchhhhHHHHHHHhc-----------cCCChhHHHHHHHHhhhcCCCC------hHHHhhhHHHHHHHHhccchhh
Q psy11028 68 --P-KNYLSLAPVFFKLMT-----------TSSNNWMLIKIIKLFGALTPLE------PRLGKKLIEPLTNLIHRIISLS 127 (136)
Q Consensus 68 --p-~~~~~lvp~lv~iL~-----------~v~~pWlqikiLk~L~~l~~~e------~~~~~~l~e~l~~iL~~~~s~s 127 (136)
+ ..|-.+.-.+-.++. .-.++=.+..+||.++.+.... +....++...+...+.+.+..+
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 2 246666555555554 3467778889999999886433 3455566666777777765544
Q ss_pred hh
Q psy11028 128 CW 129 (136)
Q Consensus 128 v~ 129 (136)
..
T Consensus 162 ~v 163 (182)
T PF13251_consen 162 RV 163 (182)
T ss_pred HH
Confidence 33
No 68
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=88.99 E-value=1.6 Score=30.42 Aligned_cols=110 Identities=14% Similarity=0.258 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHHHHHhH-CCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhc---CC------c-------chhhhH
Q psy11028 13 PYLRKKAVLMMYKVFLK-FPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARK---NP------K-------NYLSLA 75 (136)
Q Consensus 13 ~~VRKKA~l~~~rl~~~-~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~---~p------~-------~~~~lv 75 (136)
++||.|.+.++..+.++ +|+.-+++++.+.+.+.. ++.-.-.++.++..+.++ .+ + ......
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~ 80 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNS 80 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHH
Confidence 68999999999999977 499999999999998876 465555566555554331 11 0 122335
Q ss_pred HHHHHHhcc----CC---ChhHHHHHHHHhhhcCC-CChH--HHhhhHHHHHHHHhcc
Q psy11028 76 PVFFKLMTT----SS---NNWMLIKIIKLFGALTP-LEPR--LGKKLIEPLTNLIHRI 123 (136)
Q Consensus 76 p~lv~iL~~----v~---~pWlqikiLk~L~~l~~-~e~~--~~~~l~e~l~~iL~~~ 123 (136)
|.++.++.+ .. ++=+....|+.++.+.. .+.. ....+.+.+.++|+..
T Consensus 81 ~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~ 138 (148)
T PF08389_consen 81 PDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSP 138 (148)
T ss_dssp HHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCH
Confidence 555554442 12 27788888888887664 2222 2234777777777443
No 69
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=88.77 E-value=4.6 Score=30.30 Aligned_cols=103 Identities=16% Similarity=0.201 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHhHCC---CCch-hhHHHHHhhcCC--CChhHHHHHHHHHHHHHhcCCcchhh-----hHHHHHHHh
Q psy11028 14 YLRKKAVLMMYKVFLKFP---DALR-PAFPRLKEKLED--PDSGVQSAAVNVVCELARKNPKNYLS-----LAPVFFKLM 82 (136)
Q Consensus 14 ~VRKKA~l~~~rl~~~~P---~~v~-~~~~~l~~lL~D--~d~~V~~aal~l~~~l~~~~p~~~~~-----lvp~lv~iL 82 (136)
.+-.-|.-|+.-+.++.= |.+. .|+.++..-.+- .|.+|+-.+++.+..++..+|..|.. -.+.++..|
T Consensus 32 ~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hL 111 (160)
T PF11841_consen 32 EILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHL 111 (160)
T ss_pred HHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHH
Confidence 444556667777776531 3344 378888888764 37999999999999999999887753 388899999
Q ss_pred ccCCChhHHHHHHHHhhhcC-CCChHHHhhhHHHHH
Q psy11028 83 TTSSNNWMLIKIIKLFGALT-PLEPRLGKKLIEPLT 117 (136)
Q Consensus 83 ~~v~~pWlqikiLk~L~~l~-~~e~~~~~~l~e~l~ 117 (136)
.+ +++=+|.+-+-++-.|- .-++..++.+.+.+.
T Consensus 112 q~-~~~~iq~naiaLinAL~~kA~~~~r~~i~~~l~ 146 (160)
T PF11841_consen 112 QV-SNQEIQTNAIALINALFLKADDSKRKEIAETLS 146 (160)
T ss_pred Hc-CCHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 88 89999999998887653 333333444544443
No 70
>KOG1824|consensus
Probab=88.74 E-value=3.3 Score=39.23 Aligned_cols=100 Identities=13% Similarity=0.159 Sum_probs=66.5
Q ss_pred cCCCChHHHHHHHHHHHHHHhHCCCCch-hhHHHHHhhcCCC-ChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhc--
Q psy11028 8 LTSTKPYLRKKAVLMMYKVFLKFPDALR-PAFPRLKEKLEDP-DSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMT-- 83 (136)
Q Consensus 8 L~~s~~~VRKKA~l~~~rl~~~~P~~v~-~~~~~l~~lL~D~-d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~-- 83 (136)
|.+++..|||||+.|+-++--..|.-+- ..++.+.+-|..+ .++-+-..+.++-++++....-|....+..+-.+.
T Consensus 183 l~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y 262 (1233)
T KOG1824|consen 183 LQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADY 262 (1233)
T ss_pred ccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHH
Confidence 4678999999999999999988776544 5778888888665 55666666777788888766555544443333332
Q ss_pred ----cCCChhHHHHHHHHhhhcCCCChH
Q psy11028 84 ----TSSNNWMLIKIIKLFGALTPLEPR 107 (136)
Q Consensus 84 ----~v~~pWlqikiLk~L~~l~~~e~~ 107 (136)
+..+.=+--+.|+.|..|-...|+
T Consensus 263 ~~~~e~~dDELrE~~lQale~fl~rcp~ 290 (1233)
T KOG1824|consen 263 CNKIEEDDDELREYCLQALESFLRRCPK 290 (1233)
T ss_pred hcccccCcHHHHHHHHHHHHHHHHhChh
Confidence 224455566667766666443333
No 71
>KOG2259|consensus
Probab=88.72 E-value=6.9 Score=35.79 Aligned_cols=106 Identities=11% Similarity=0.115 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcC---CcchhhhH-----------HHHH
Q psy11028 14 YLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN---PKNYLSLA-----------PVFF 79 (136)
Q Consensus 14 ~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~---p~~~~~lv-----------p~lv 79 (136)
-||+-|+-.++++-...|+......+.+.++++|...-|=.=++..+..|+.+- .++...+. -.+-
T Consensus 388 EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~s~dvRe~l~ 467 (823)
T KOG2259|consen 388 EVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQILESLEDRSVDVREALR 467 (823)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhcCHHHHHHHH
Confidence 599999999999999999999999999999999999999999999998887762 22211111 1122
Q ss_pred HHhcc--C----CChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhcc
Q psy11028 80 KLMTT--S----SNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRI 123 (136)
Q Consensus 80 ~iL~~--v----~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~ 123 (136)
.+|+. + +=.-+..++|+-|..|+.+.+ .++.+|.+|=|+.
T Consensus 468 elL~~~~~~d~~~i~m~v~~lL~~L~kyPqDrd----~i~~cm~~iGqnH 513 (823)
T KOG2259|consen 468 ELLKNARVSDLECIDMCVAHLLKNLGKYPQDRD----EILRCMGRIGQNH 513 (823)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHhhhCCCCcH----HHHHHHHHHhccC
Confidence 24442 1 234566788888888888754 6778887776554
No 72
>KOG1020|consensus
Probab=88.67 E-value=1.8 Score=42.46 Aligned_cols=87 Identities=11% Similarity=0.278 Sum_probs=77.7
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHh
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM 82 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL 82 (136)
.|...+.++...||-.|+--+=|++.-+||.+..+.+.+...+.|..-+|===++-.+.++|..+|+ |...+--.+++|
T Consensus 859 ~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pd-f~~i~~~cakml 937 (1692)
T KOG1020|consen 859 AVHGRLNDSSASVREAALDLVGRFVLSIPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPD-FSKIVDMCAKML 937 (1692)
T ss_pred HHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCC-hhhHHHHHHHHH
Confidence 3566788999999999999999999999999999999999999999999999999999999999997 555667778888
Q ss_pred ccCCChhH
Q psy11028 83 TTSSNNWM 90 (136)
Q Consensus 83 ~~v~~pWl 90 (136)
+.+.|+=.
T Consensus 938 rRv~DEEg 945 (1692)
T KOG1020|consen 938 RRVNDEEG 945 (1692)
T ss_pred HHhccchh
Confidence 88877777
No 73
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=88.51 E-value=7.6 Score=28.19 Aligned_cols=77 Identities=18% Similarity=0.172 Sum_probs=59.5
Q ss_pred HHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch------hhhHHHHHHHhccCCChhHHHHHHHHhh
Q psy11028 26 VFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY------LSLAPVFFKLMTTSSNNWMLIKIIKLFG 99 (136)
Q Consensus 26 l~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~------~~lvp~lv~iL~~v~~pWlqikiLk~L~ 99 (136)
++...++...+.+..+++.|.++|+-|..-|+.++..+.++=...| +.|...+++++.+-++|=.+-|+|.++.
T Consensus 31 ~In~~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~ 110 (142)
T cd03569 31 MIRSKDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQ 110 (142)
T ss_pred HHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHH
Confidence 3344445455678889999999999999999999988888755433 3567788888877678888889999888
Q ss_pred hcC
Q psy11028 100 ALT 102 (136)
Q Consensus 100 ~l~ 102 (136)
.-+
T Consensus 111 ~W~ 113 (142)
T cd03569 111 AWA 113 (142)
T ss_pred HHH
Confidence 654
No 74
>KOG1078|consensus
Probab=88.46 E-value=1.6 Score=40.15 Aligned_cols=117 Identities=12% Similarity=0.162 Sum_probs=83.3
Q ss_pred CCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhccCCChh
Q psy11028 10 STKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNW 89 (136)
Q Consensus 10 ~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~~v~~pW 89 (136)
++++.++--|....++++....+.+..|...+.....+.|..|..=+++++..+-+++.-.--+++..+.+ ++..+|+
T Consensus 146 d~~~avSsaalvss~hll~~~~~~vkrw~neiqea~~s~~~m~QyHalglLyqirk~drla~sklv~~~~~--~~~~~~~ 223 (865)
T KOG1078|consen 146 DKNPAVSSAALVSSYHLLPISFDVVKRWANEVQEAVNSDNIMVQYHALGLLYQIRKNDRLAVSKLVQKFTR--GSLKSPL 223 (865)
T ss_pred ccccccchHHHHHHhhhhcccHHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHcc--ccccchh
Confidence 57777888888888888888888888888888888888888888888888888877776555555555555 4567777
Q ss_pred HHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccchhhh
Q psy11028 90 MLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLSC 128 (136)
Q Consensus 90 lqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~s~sv 128 (136)
-.+-+.|+-..+-..++...-.+.+.+...+.+-.=++.
T Consensus 224 A~~~lir~~~~~l~~~~~~~s~~~~fl~s~l~~K~emV~ 262 (865)
T KOG1078|consen 224 AVCMLIRIASELLKENQQADSPLFPFLESCLRHKSEMVI 262 (865)
T ss_pred HHHHHHHHHHHHhhhcccchhhHHHHHHHHHhchhHHHH
Confidence 777777777777666554444566666666654443333
No 75
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=87.64 E-value=11 Score=30.10 Aligned_cols=104 Identities=20% Similarity=0.250 Sum_probs=74.0
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHh
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM 82 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL 82 (136)
.+.+.+.+.++.+|..|+..+-. --.+..++.+.+.+.|.++.|-.+++. .+.... ....+|.++..|
T Consensus 47 ~~~~~l~~~~~~vr~~aa~~l~~------~~~~~av~~l~~~l~d~~~~vr~~a~~---aLg~~~---~~~a~~~li~~l 114 (335)
T COG1413 47 ELLKLLEDEDLLVRLSAAVALGE------LGSEEAVPLLRELLSDEDPRVRDAAAD---ALGELG---DPEAVPPLVELL 114 (335)
T ss_pred HHHHHHcCCCHHHHHHHHHHHhh------hchHHHHHHHHHHhcCCCHHHHHHHHH---HHHccC---ChhHHHHHHHHH
Confidence 45677778889999988877210 011236788999999999999888887 333332 225788888888
Q ss_pred ccCCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccc
Q psy11028 83 TTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRII 124 (136)
Q Consensus 83 ~~v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~ 124 (136)
.+-++.+..-...+.|+.++... -.+.+.+.++...
T Consensus 115 ~~d~~~~vR~~aa~aL~~~~~~~------a~~~l~~~l~~~~ 150 (335)
T COG1413 115 ENDENEGVRAAAARALGKLGDER------ALDPLLEALQDED 150 (335)
T ss_pred HcCCcHhHHHHHHHHHHhcCchh------hhHHHHHHhccch
Confidence 87789999999999888887663 2555666666554
No 76
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=87.46 E-value=5.8 Score=28.42 Aligned_cols=84 Identities=18% Similarity=0.286 Sum_probs=62.9
Q ss_pred HHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh------hhHHHHHHHhcc-CCChh--
Q psy11028 19 AVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL------SLAPVFFKLMTT-SSNNW-- 89 (136)
Q Consensus 19 A~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~------~lvp~lv~iL~~-v~~pW-- 89 (136)
+++-+-=.++..++...+.+..|++.|...+|.|..-|+.++-.+.++-...|. .|...+++++++ ...|+
T Consensus 25 ~~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~ 104 (140)
T PF00790_consen 25 LILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETP 104 (140)
T ss_dssp HHHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSH
T ss_pred HHHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhH
Confidence 344444455556666667888899999999999999999999999887755443 367777777764 45566
Q ss_pred HHHHHHHHhhhcC
Q psy11028 90 MLIKIIKLFGALT 102 (136)
Q Consensus 90 lqikiLk~L~~l~ 102 (136)
.+-|++.++...+
T Consensus 105 Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 105 VKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8999999888654
No 77
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=86.82 E-value=11 Score=28.27 Aligned_cols=120 Identities=16% Similarity=0.154 Sum_probs=80.0
Q ss_pred hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchh--hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhh----H
Q psy11028 2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRP--AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSL----A 75 (136)
Q Consensus 2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~--~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~l----v 75 (136)
.+|.++.-++++.+|..|+-.+.-+.+. .++.+ .++.+..+..|+|+.+-.-|..+..++.+++|+....- +
T Consensus 11 ~~Il~~~~~~~~~vr~~Al~~l~~il~q--GLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~~~gi 88 (187)
T PF12830_consen 11 KNILELCLSSDDSVRLAALQVLELILRQ--GLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRYSEGI 88 (187)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhc--CCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4678888999999999999988887775 56664 67999999999999999999999999999998754322 2
Q ss_pred HHHHHHhcc-CCChhH-----HHHHHHHhhhcCCCChHHHhhhHHHHHHHHhcc
Q psy11028 76 PVFFKLMTT-SSNNWM-----LIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRI 123 (136)
Q Consensus 76 p~lv~iL~~-v~~pWl-----qikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~ 123 (136)
-..+..-+. .++++. ....+.-+-.+.....+..++++.-+...+...
T Consensus 89 ~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl~~l~k~f~~~ 142 (187)
T PF12830_consen 89 RLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFLKSLLKQFDFD 142 (187)
T ss_pred HHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHHHHHHHHHHhh
Confidence 222221111 122222 333444333333344455666666666666554
No 78
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=86.76 E-value=1.1 Score=32.77 Aligned_cols=78 Identities=22% Similarity=0.239 Sum_probs=52.0
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhc
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMT 83 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~ 83 (136)
...+|.+.++-|.|-|.-|+... ++| .+....+.+..+++|....==.+...+-.+=....++.-..++|-+++||-
T Consensus 22 ~~~LL~~~d~~vQklAL~cll~~--k~~-~l~pY~d~L~~Lldd~~frdeL~~f~~~~~~~~I~~ehR~~l~pvvlRILy 98 (141)
T PF07539_consen 22 LLRLLSSRDPEVQKLALDCLLTW--KDP-YLTPYKDNLENLLDDKTFRDELTTFNLSDESSVIEEEHRPELMPVVLRILY 98 (141)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHh--CcH-HHHhHHHHHHHHcCcchHHHHHHhhcccCCcCCCCHHHHhHHHHHHHHHHH
Confidence 35788999999999999998762 233 456678999999988644433333322111111234555678999999988
Q ss_pred c
Q psy11028 84 T 84 (136)
Q Consensus 84 ~ 84 (136)
+
T Consensus 99 g 99 (141)
T PF07539_consen 99 G 99 (141)
T ss_pred H
Confidence 4
No 79
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=85.93 E-value=12 Score=29.97 Aligned_cols=61 Identities=25% Similarity=0.348 Sum_probs=44.8
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCC-Cch-----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhc
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPD-ALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELARK 66 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~-~v~-----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~ 66 (136)
...-|+++++.+|.||..++..+....|. .+. .+.+.+.+.|+ |+..+..++..+..+.+.
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~--D~~~~~~~l~gl~~L~~~ 70 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLD--DHACVQPALKGLLALVKM 70 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhc--cHhhHHHHHHHHHHHHhC
Confidence 45678999999999999999999998883 232 24566777773 455555558888888754
No 80
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=85.92 E-value=15 Score=28.68 Aligned_cols=81 Identities=16% Similarity=0.183 Sum_probs=60.6
Q ss_pred HHHHHHHHHhHCCCCchhhHHHHHhhc-CCCChhHHHHHHHHHHHHHhcCC----cchhhhHHHHHHHhccCCChhHHHH
Q psy11028 19 AVLMMYKVFLKFPDALRPAFPRLKEKL-EDPDSGVQSAAVNVVCELARKNP----KNYLSLAPVFFKLMTTSSNNWMLIK 93 (136)
Q Consensus 19 A~l~~~rl~~~~P~~v~~~~~~l~~lL-~D~d~~V~~aal~l~~~l~~~~p----~~~~~lvp~lv~iL~~v~~pWlqik 93 (136)
.+.+++-+++..|+...++.+.+...| .+.++.+.+.++-.+..+++.+- +.|..+.+.+ ..-..|=++-.
T Consensus 104 ~a~s~~~ic~~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~vl~~~l----~~~~rp~v~~~ 179 (234)
T PF12530_consen 104 IAASIRDICCSRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWKVLQKKL----SLDYRPLVLKS 179 (234)
T ss_pred HHHHHHHHHHhChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhc----CCccchHHHHH
Confidence 357888999999997778999999999 78999999999999999996542 2233333333 44467777776
Q ss_pred HHHHhhhcCC
Q psy11028 94 IIKLFGALTP 103 (136)
Q Consensus 94 iLk~L~~l~~ 103 (136)
+.++++.++.
T Consensus 180 l~~l~~l~~~ 189 (234)
T PF12530_consen 180 LCSLFALVPQ 189 (234)
T ss_pred HHHHHHHhcc
Confidence 7777777653
No 81
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=85.73 E-value=5.7 Score=30.40 Aligned_cols=93 Identities=14% Similarity=0.214 Sum_probs=66.5
Q ss_pred hHCCCCch--hhHHHHHhhcCCCChhHHHHHHHHHHHHHhc-CCcchhhhHHHHHHHhc---cCCChhHHHHHHHHhhhc
Q psy11028 28 LKFPDALR--PAFPRLKEKLEDPDSGVQSAAVNVVCELARK-NPKNYLSLAPVFFKLMT---TSSNNWMLIKIIKLFGAL 101 (136)
Q Consensus 28 ~~~P~~v~--~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~-~p~~~~~lvp~lv~iL~---~v~~pWlqikiLk~L~~l 101 (136)
+.+||.++ .+.+.+.+.|.+.++---.-|..-+.++.+. .++...+++|.++.=|+ +..+|=.....|++|+.|
T Consensus 28 ~~~~e~Ldy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~L 107 (183)
T PF10274_consen 28 KVDPEKLDYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQL 107 (183)
T ss_pred ecChhhcchhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 34566655 4778888888887666666667778888888 77788888888888777 368999999999999999
Q ss_pred CCCChHHHhhhHHHHHHHH
Q psy11028 102 TPLEPRLGKKLIEPLTNLI 120 (136)
Q Consensus 102 ~~~e~~~~~~l~e~l~~iL 120 (136)
....+...+.+.+-+.++|
T Consensus 108 v~~~~~vG~aLvPyyrqLL 126 (183)
T PF10274_consen 108 VTSSDMVGEALVPYYRQLL 126 (183)
T ss_pred HHhhhhhhHHHHHHHHHHH
Confidence 4444444444554444444
No 82
>KOG2023|consensus
Probab=85.25 E-value=2.3 Score=38.87 Aligned_cols=77 Identities=16% Similarity=0.206 Sum_probs=63.6
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCchh----hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHH
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRP----AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFF 79 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~----~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv 79 (136)
..+..+|++|-+|+-|+-|+-.++-..++.+.. |.+.+-.+=+|.||-|=-.....+..+.+..|+...+..+.++
T Consensus 179 fl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~Iv 258 (885)
T KOG2023|consen 179 FLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIV 258 (885)
T ss_pred HHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHH
Confidence 456678999999999999999988888776653 6677777779999999999999999999999986666666665
Q ss_pred H
Q psy11028 80 K 80 (136)
Q Consensus 80 ~ 80 (136)
.
T Consensus 259 e 259 (885)
T KOG2023|consen 259 E 259 (885)
T ss_pred H
Confidence 5
No 83
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=85.02 E-value=4.4 Score=34.12 Aligned_cols=74 Identities=11% Similarity=0.207 Sum_probs=57.8
Q ss_pred CCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHh
Q psy11028 9 TSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM 82 (136)
Q Consensus 9 ~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL 82 (136)
..++..+|-.-..|+..+.+..|..+- ...|-+.+.|+-.|..|..+++..+..+..++|+.+.+.+..++..|
T Consensus 333 ~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~L 411 (415)
T PF12460_consen 333 KEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRL 411 (415)
T ss_pred hhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 344444666677888899999996432 25677788888889999999999999999999988877777777654
No 84
>KOG2023|consensus
Probab=84.99 E-value=4.4 Score=37.14 Aligned_cols=62 Identities=21% Similarity=0.252 Sum_probs=53.3
Q ss_pred hhcCCCChHHHHHHHHHHHHHHhHCCCCchh----hHHHHHhhcCCCChhHHHHHHHHHHHHHhcC
Q psy11028 6 IYLTSTKPYLRKKAVLMMYKVFLKFPDALRP----AFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67 (136)
Q Consensus 6 klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~----~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~ 67 (136)
.+=++.+|.|||--|.++..+.+..||.+.+ .++++.+.-.|.|.+|..-|.-....+++..
T Consensus 222 alanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqp 287 (885)
T KOG2023|consen 222 ALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQP 287 (885)
T ss_pred HHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCc
Confidence 3447899999999999999999999997653 6799999999999999999988888887754
No 85
>KOG0414|consensus
Probab=84.47 E-value=2 Score=41.12 Aligned_cols=76 Identities=18% Similarity=0.242 Sum_probs=65.4
Q ss_pred CCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcC-CCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhcc
Q psy11028 9 TSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLE-DPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTT 84 (136)
Q Consensus 9 ~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~-D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~~ 84 (136)
.+++|-++..|-+|+.|+.-.+.+..+.-.+-+-..++ .++|-|=++++..+.+++-..|..+....+.+++.|..
T Consensus 933 ~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~T~~Ly~rL~D 1009 (1251)
T KOG0414|consen 933 LFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPWTEHLYRRLRD 1009 (1251)
T ss_pred cCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccchhhHHHHHHhcC
Confidence 45889999999999999999988877777777777776 67888888888888999999998888888888888875
No 86
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=84.25 E-value=5.3 Score=29.32 Aligned_cols=115 Identities=12% Similarity=0.147 Sum_probs=80.3
Q ss_pred CCChHHHHHHHHHHHHHHhHCCCCchh-hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcc----h--hhhHHHHHHHh
Q psy11028 10 STKPYLRKKAVLMMYKVFLKFPDALRP-AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKN----Y--LSLAPVFFKLM 82 (136)
Q Consensus 10 ~s~~~VRKKA~l~~~rl~~~~P~~v~~-~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~----~--~~lvp~lv~iL 82 (136)
...+.+|-.|.+|+.|+++..++-..+ +.+.+..++.+.+..-...+++++..+-.--|+. | ..+.+.+....
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~ 95 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLA 95 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHH
Confidence 578889999999999998777776655 5577777887666556666666666665555542 2 23555666655
Q ss_pred c-cCCChhHHHHHHHHhhhcCCCChH---HHhhhHHHHHHHHhccc
Q psy11028 83 T-TSSNNWMLIKIIKLFGALTPLEPR---LGKKLIEPLTNLIHRII 124 (136)
Q Consensus 83 ~-~v~~pWlqikiLk~L~~l~~~e~~---~~~~l~e~l~~iL~~~~ 124 (136)
. ...++=.|..++++|..=+.++.. ..++..+.+.+..++..
T Consensus 96 ~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~ 141 (157)
T PF11701_consen 96 SRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSK 141 (157)
T ss_dssp H-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC
T ss_pred hcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccc
Confidence 5 468999999999999877766542 36677777877775544
No 87
>KOG1240|consensus
Probab=84.15 E-value=8.5 Score=37.37 Aligned_cols=129 Identities=14% Similarity=0.212 Sum_probs=82.3
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHC----------------------------------------CCCchh-hHHHH
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKF----------------------------------------PDALRP-AFPRL 41 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~----------------------------------------P~~v~~-~~~~l 41 (136)
-|..||.++.|+||+.=.-.+..+|-+. +..+++ ..|-+
T Consensus 582 ~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl 661 (1431)
T KOG1240|consen 582 MVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLL 661 (1431)
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHH
Confidence 3677889999999987655554444322 122233 35778
Q ss_pred HhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhcc------CCChhHHHHHHHHhhhcCC--CChHHHhhhH
Q psy11028 42 KEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTT------SSNNWMLIKIIKLFGALTP--LEPRLGKKLI 113 (136)
Q Consensus 42 ~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~~------v~~pWlqikiLk~L~~l~~--~e~~~~~~l~ 113 (136)
.+.|.|...-|+.+|+..+..+++..= ++ -|.++.|+.. .|+-|.-=-.+-++..... .+.....++.
T Consensus 662 ~Q~ltD~EE~Viv~aL~~ls~Lik~~l--l~--K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~ 737 (1431)
T KOG1240|consen 662 QQGLTDGEEAVIVSALGSLSILIKLGL--LR--KPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLM 737 (1431)
T ss_pred HHhccCcchhhHHHHHHHHHHHHHhcc--cc--hHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEee
Confidence 889999999999999999999888541 11 1234444443 3899988877777664432 2233445666
Q ss_pred HHHHHHH-----hccchhhhhhhcccC
Q psy11028 114 EPLTNLI-----HRIISLSCWTGIKPM 135 (136)
Q Consensus 114 e~l~~iL-----~~~~s~sv~~~~k~~ 135 (136)
+.+.+.+ +-....+++.-+||+
T Consensus 738 P~irpfl~~~v~~i~s~~~LlsclkpP 764 (1431)
T KOG1240|consen 738 PLIRPFLERPVIQIESKEVLLSCLKPP 764 (1431)
T ss_pred hhhHHhhhccHhhhcchHHHHHHhcCC
Confidence 6665544 445556677777765
No 88
>KOG2956|consensus
Probab=84.06 E-value=10 Score=33.23 Aligned_cols=71 Identities=18% Similarity=0.198 Sum_probs=51.9
Q ss_pred hhhhhcCC-CChHHHHHHHHHHHHHHhHCCCCchh----hHHHHHhhcCCCChhHHHHHHHHH-HHHHhcCCcchhh
Q psy11028 3 GYFIYLTS-TKPYLRKKAVLMMYKVFLKFPDALRP----AFPRLKEKLEDPDSGVQSAAVNVV-CELARKNPKNYLS 73 (136)
Q Consensus 3 ~V~klL~~-s~~~VRKKA~l~~~rl~~~~P~~v~~----~~~~l~~lL~D~d~~V~~aal~l~-~~l~~~~p~~~~~ 73 (136)
.+...|++ .++.+||=|.-.+-++++.-|..+.+ .+.++.+.=+|.+.+|+..|.--+ .-++.+.|..+..
T Consensus 333 ~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~ 409 (516)
T KOG2956|consen 333 LLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIV 409 (516)
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHH
Confidence 45566777 66666677777778899999987765 466777777899999999887554 4556788876543
No 89
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=83.21 E-value=10 Score=25.55 Aligned_cols=68 Identities=16% Similarity=0.281 Sum_probs=51.2
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHH----HhccCCChhHHHHHHHHhhhcCCCChH
Q psy11028 38 FPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFK----LMTTSSNNWMLIKIIKLFGALTPLEPR 107 (136)
Q Consensus 38 ~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~----iL~~v~~pWlqikiLk~L~~l~~~e~~ 107 (136)
.+...+.|.|+.+-|=+-|+..+..+.++.. .....++.+.. .|+. +++|.=...++.|..|+...|+
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d-~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKD-EDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCC-CCchHHHHHHHHHHHHHHHChH
Confidence 4556677789999999999999999988765 11223444444 4444 8999999999999999977664
No 90
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=83.12 E-value=8.1 Score=26.28 Aligned_cols=64 Identities=17% Similarity=0.274 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhHCCCCch----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHH
Q psy11028 16 RKKAVLMMYKVFLKFPDALR----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFF 79 (136)
Q Consensus 16 RKKA~l~~~rl~~~~P~~v~----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv 79 (136)
||-+.+|+..+-.--++.++ .+++.+.+.+.|+|..|=-+|.-.+..+++.-.+......+.++
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF 70 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIF 70 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777665555454 35677888899999999999999999999876654433333333
No 91
>KOG3723|consensus
Probab=83.09 E-value=15 Score=33.37 Aligned_cols=82 Identities=17% Similarity=0.268 Sum_probs=62.7
Q ss_pred HHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhccCCChhHHHHHHHHhhhcCC
Q psy11028 24 YKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTP 103 (136)
Q Consensus 24 ~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~ 103 (136)
.-.|.+-||.+.++.+.+.-+|...+|.--.+.--+..-|.++.|+...+++|.+..-++...-.=....|++.++.++|
T Consensus 187 S~Vye~~P~~i~PhlP~l~~lL~q~~p~~~~ll~~l~~LI~Qk~~evL~~ciP~L~g~l~ds~~~~i~~~Ilk~ia~~~p 266 (851)
T KOG3723|consen 187 SAVYEKQPQPINPHLPELLALLSQLEPEQYHLLRLLHVLIKQKQLEVLQKCIPFLIGHLKDSTHNDIILNILKEIAVYEP 266 (851)
T ss_pred HHHHhcCCCccCcccHHHHHHhcCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCc
Confidence 34678899999999999999998888776555544555556678899999999999988865444455667777777776
Q ss_pred CC
Q psy11028 104 LE 105 (136)
Q Consensus 104 ~e 105 (136)
..
T Consensus 267 v~ 268 (851)
T KOG3723|consen 267 VA 268 (851)
T ss_pred cc
Confidence 54
No 92
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=82.46 E-value=4.5 Score=37.44 Aligned_cols=64 Identities=25% Similarity=0.373 Sum_probs=55.0
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHhHCCCCch---hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCC
Q psy11028 5 FIYLTSTKPYLRKKAVLMMYKVFLKFPDALR---PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNP 68 (136)
Q Consensus 5 ~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~---~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p 68 (136)
...|++++||+|-||.-.+.++|+...-.+. .+++-+.+.|.|+.--|=-.|+.++..+.-++|
T Consensus 352 ~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 352 VERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred HHHhhccchHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 4556899999999999999999987655544 478888899999999999999999999988877
No 93
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=82.38 E-value=3.4 Score=23.07 Aligned_cols=28 Identities=36% Similarity=0.478 Sum_probs=24.5
Q ss_pred hHHHHHhhcCCCChhHHHHHHHHHHHHH
Q psy11028 37 AFPRLKEKLEDPDSGVQSAAVNVVCELA 64 (136)
Q Consensus 37 ~~~~l~~lL~D~d~~V~~aal~l~~~l~ 64 (136)
.++.+.++|.+.|+.|.-.++..+..++
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 6788999999999999999998888775
No 94
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=82.36 E-value=5.4 Score=36.48 Aligned_cols=98 Identities=19% Similarity=0.320 Sum_probs=67.1
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCC----Cch-hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCc----chhhh
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPD----ALR-PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK----NYLSL 74 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~----~v~-~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~----~~~~l 74 (136)
+.+++.+.+.-+++.|.-.++-+- .+++ .+. ++++++..+|.|.+... .++.++..++..+.. .+.++
T Consensus 336 L~kLl~s~~~~l~~~aLrlL~NLS-fd~~~R~~mV~~GlIPkLv~LL~d~~~~~--val~iLy~LS~dd~~r~~f~~Tdc 412 (708)
T PF05804_consen 336 LLKLLPSENEDLVNVALRLLFNLS-FDPELRSQMVSLGLIPKLVELLKDPNFRE--VALKILYNLSMDDEARSMFAYTDC 412 (708)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhC-cCHHHHHHHHHCCCcHHHHHHhCCCchHH--HHHHHHHHhccCHhhHHHHhhcch
Confidence 567888888888888877766543 3333 333 36899999998876543 367778888775432 34578
Q ss_pred HHHHHHHhccCCChhHHHHHHHHhhhcCCC
Q psy11028 75 APVFFKLMTTSSNNWMLIKIIKLFGALTPL 104 (136)
Q Consensus 75 vp~lv~iL~~v~~pWlqikiLk~L~~l~~~ 104 (136)
+|.++++|...+++=.+..++-++..++.+
T Consensus 413 Ip~L~~~Ll~~~~~~v~~eliaL~iNLa~~ 442 (708)
T PF05804_consen 413 IPQLMQMLLENSEEEVQLELIALLINLALN 442 (708)
T ss_pred HHHHHHHHHhCCCccccHHHHHHHHHHhcC
Confidence 999999887666666666666666666554
No 95
>KOG1991|consensus
Probab=82.15 E-value=11 Score=35.57 Aligned_cols=120 Identities=21% Similarity=0.255 Sum_probs=81.3
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHh---HCCCCchhhHHHHHhhcC-CCChhHHHHHHHHHHHHHhcCC---cchhhhH
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFL---KFPDALRPAFPRLKEKLE-DPDSGVQSAAVNVVCELARKNP---KNYLSLA 75 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~---~~P~~v~~~~~~l~~lL~-D~d~~V~~aal~l~~~l~~~~p---~~~~~lv 75 (136)
+|.-.+++.-.|.|-|||-.++++.. ++|.......+-..+.|. |++.-|..-|.=.+..+...++ +.++.++
T Consensus 466 hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hv 545 (1010)
T KOG1991|consen 466 HVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHV 545 (1010)
T ss_pred HhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhh
Confidence 56667789999999999999999983 345555556677777776 8888887766666677766665 4477788
Q ss_pred HHHHH-Hhc---cCCC----hhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhc
Q psy11028 76 PVFFK-LMT---TSSN----NWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHR 122 (136)
Q Consensus 76 p~lv~-iL~---~v~~----pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~ 122 (136)
|.... +|+ .+.+ .-+|--+=++=.-+.|.-+.+.+.|.+....++++
T Consensus 546 p~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~ 600 (1010)
T KOG1991|consen 546 PPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQT 600 (1010)
T ss_pred hHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhc
Confidence 77665 333 2221 22232222333355666678888888888888886
No 96
>KOG0168|consensus
Probab=81.85 E-value=2.1 Score=39.95 Aligned_cols=65 Identities=20% Similarity=0.243 Sum_probs=54.0
Q ss_pred CCCChHHHHHHHHHHHHHHhH-CCCCchh------hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhh
Q psy11028 9 TSTKPYLRKKAVLMMYKVFLK-FPDALRP------AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLS 73 (136)
Q Consensus 9 ~~s~~~VRKKA~l~~~rl~~~-~P~~v~~------~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~ 73 (136)
++-+++||.|+.-|++|+.-. +++++.. .-..+..+|..+|+-|+..|+.+..-|+++.|+-|..
T Consensus 566 SsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~ 637 (1051)
T KOG0168|consen 566 SSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSP 637 (1051)
T ss_pred ccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhh
Confidence 568999999999999998755 5666654 2456888889999999999999999999999986643
No 97
>KOG1242|consensus
Probab=81.46 E-value=2.8 Score=37.34 Aligned_cols=47 Identities=30% Similarity=0.338 Sum_probs=39.2
Q ss_pred hhhhhhcCCCChHHHHHHHHHHHHHHhH--CCCCchhhHHHHHhhcCCCC
Q psy11028 2 LGYFIYLTSTKPYLRKKAVLMMYKVFLK--FPDALRPAFPRLKEKLEDPD 49 (136)
Q Consensus 2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~--~P~~v~~~~~~l~~lL~D~d 49 (136)
+.+.+.|.+++|-|||.|.-|+.++... +|| +..+++.+.+.+.|+.
T Consensus 298 P~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I~~~ip~Lld~l~dp~ 346 (569)
T KOG1242|consen 298 PVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-IQKIIPTLLDALADPS 346 (569)
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-HHHHHHHHHHHhcCcc
Confidence 4567788999999999999999999876 444 6668888888888876
No 98
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=81.05 E-value=1.2 Score=26.33 Aligned_cols=23 Identities=13% Similarity=0.114 Sum_probs=19.0
Q ss_pred hhhhhcCCCChHHHHHHHHHHHH
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYK 25 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~r 25 (136)
-+..+|+++++.||..|+.|+-+
T Consensus 32 ~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 32 ALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHTTSSSHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCHHHHHHHHHHHhc
Confidence 45678899999999999998754
No 99
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=80.98 E-value=7.9 Score=26.48 Aligned_cols=57 Identities=7% Similarity=0.117 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhh
Q psy11028 17 KKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLS 73 (136)
Q Consensus 17 KKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~ 73 (136)
.+...-+..+...+++........+.+.|.++++-|+.=|+.++..++++-.+.|..
T Consensus 18 ~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~ 74 (115)
T cd00197 18 WPLIMEICDLINETNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQ 74 (115)
T ss_pred HHHHHHHHHHHHCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHH
Confidence 344555555666677777888999999999999999999999999999988766654
No 100
>KOG2274|consensus
Probab=80.95 E-value=13 Score=35.13 Aligned_cols=117 Identities=14% Similarity=0.151 Sum_probs=81.0
Q ss_pred hhcCCCChHHHHHHHHHHHHHHhHCCCCc----hhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcc----hhhhHHH
Q psy11028 6 IYLTSTKPYLRKKAVLMMYKVFLKFPDAL----RPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKN----YLSLAPV 77 (136)
Q Consensus 6 klL~~s~~~VRKKA~l~~~rl~~~~P~~v----~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~----~~~lvp~ 77 (136)
-+..+..+++|=+|+-++--.+ .+..+ +.+.+-+.++..+..--|+...+-.++..++-||+. -.+..|.
T Consensus 498 ~l~~~~~~~~ki~a~~~~~~~~--~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~ 575 (1005)
T KOG2274|consen 498 ALTMDVPPPVKISAVRAFCGYC--KVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPL 575 (1005)
T ss_pred hhccCCCCchhHHHHHHHHhcc--CceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHH
Confidence 3456788999999988776666 34433 346677788888899999999999999999999963 2356787
Q ss_pred HHHHhc-cCCChhHHHHHHHHhhhcCCCC---hHHHhhhHHHHHHHHhccc
Q psy11028 78 FFKLMT-TSSNNWMLIKIIKLFGALTPLE---PRLGKKLIEPLTNLIHRII 124 (136)
Q Consensus 78 lv~iL~-~v~~pWlqikiLk~L~~l~~~e---~~~~~~l~e~l~~iL~~~~ 124 (136)
+..+.. ...+|..-.-...+|.-+...+ ....+++++.+..+++.++
T Consensus 576 ~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~iPslisil~~~~ 626 (1005)
T KOG2274|consen 576 TINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQERLIPSLISVLQLNA 626 (1005)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCcc
Confidence 777554 5678854443333333332110 1236789999999998887
No 101
>KOG2149|consensus
Probab=80.95 E-value=27 Score=29.86 Aligned_cols=120 Identities=21% Similarity=0.288 Sum_probs=85.0
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchh----hHHHHHhhcCCCChhHHHHHHHHHHHHHhcC-Ccc---hh-h
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRP----AFPRLKEKLEDPDSGVQSAAVNVVCELARKN-PKN---YL-S 73 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~----~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~-p~~---~~-~ 73 (136)
|....++|-+.-|||-|..-+...+..+|+.+.. ..+.+..+..|.|..|=.+...++..+.-.. |+. +. -
T Consensus 62 eLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l 141 (393)
T KOG2149|consen 62 ELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSL 141 (393)
T ss_pred HHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHH
Confidence 5667789999999999999999999999998762 6799999999999999999999888764433 322 22 2
Q ss_pred hHHHHHHHhccCCChhHHHHHHHHhhhcC---CCC-hHHHhhhHHHHHHHHhcc
Q psy11028 74 LAPVFFKLMTTSSNNWMLIKIIKLFGALT---PLE-PRLGKKLIEPLTNLIHRI 123 (136)
Q Consensus 74 lvp~lv~iL~~v~~pWlqikiLk~L~~l~---~~e-~~~~~~l~e~l~~iL~~~ 123 (136)
+.|.+-..+.. ..|-.|.--+++|..+. |+. -+.+.++.+.+.+.++..
T Consensus 142 ~~~yi~~AMTh-it~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i~~~ 194 (393)
T KOG2149|consen 142 LMPYISSAMTH-ITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVISKL 194 (393)
T ss_pred HHHHHHHHHhh-ccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHh
Confidence 34444445555 36777766666665443 332 344555777777777543
No 102
>KOG1824|consensus
Probab=80.24 E-value=4.8 Score=38.21 Aligned_cols=117 Identities=21% Similarity=0.278 Sum_probs=83.5
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCchh----hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHH
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRP----AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFF 79 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~----~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv 79 (136)
....+.++.++.|-.++-++-=.+--.|+-+.. +++.+.+++.|+|.-|--.|+.++...+.+.|...+.+.|.+.
T Consensus 971 L~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLL 1050 (1233)
T KOG1824|consen 971 LKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELL 1050 (1233)
T ss_pred HHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHH
Confidence 345678899999988888877666777777664 6788999999999999999999999999999988888777777
Q ss_pred HHhcc---CCChhHHHHHHHHhhhcCC-----CC-hHHHhhhHHHHHHHHhccchh
Q psy11028 80 KLMTT---SSNNWMLIKIIKLFGALTP-----LE-PRLGKKLIEPLTNLIHRIISL 126 (136)
Q Consensus 80 ~iL~~---v~~pWlqikiLk~L~~l~~-----~e-~~~~~~l~e~l~~iL~~~~s~ 126 (136)
..|-+ +... ++|-. -+|| +| -...+--.|+|+.+|.+.-..
T Consensus 1051 p~Ly~eTkvrke-----lIreV-eMGPFKH~VDdgLd~RKaaFEcmytLLdscld~ 1100 (1233)
T KOG1824|consen 1051 PLLYSETKVRKE-----LIREV-EMGPFKHTVDDGLDLRKAAFECMYTLLDSCLDR 1100 (1233)
T ss_pred HHHHHhhhhhHh-----hhhhh-cccCccccccchHHHHHHHHHHHHHHHHhhhhh
Confidence 65542 1000 11111 2344 22 245666788888887665443
No 103
>KOG0212|consensus
Probab=80.09 E-value=35 Score=30.85 Aligned_cols=79 Identities=16% Similarity=0.248 Sum_probs=63.0
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHhHCCCCch----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCc-chhhhHHHHH
Q psy11028 5 FIYLTSTKPYLRKKAVLMMYKVFLKFPDALR----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK-NYLSLAPVFF 79 (136)
Q Consensus 5 ~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~-~~~~lvp~lv 79 (136)
.+.+++++..-|=.|.-=++.++.+.|.-+- +.++.+.+-|.|++--|+.-++.++.++|...-. .++++.-++.
T Consensus 342 ~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~sLL 421 (675)
T KOG0212|consen 342 TKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKFLLSLL 421 (675)
T ss_pred HHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHHHHHHH
Confidence 3556777777777777778889999997442 3788899999999999999999999999985543 6777777777
Q ss_pred HHhc
Q psy11028 80 KLMT 83 (136)
Q Consensus 80 ~iL~ 83 (136)
.+.+
T Consensus 422 ~~f~ 425 (675)
T KOG0212|consen 422 EMFK 425 (675)
T ss_pred HHHh
Confidence 7666
No 104
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=79.96 E-value=9 Score=30.90 Aligned_cols=75 Identities=16% Similarity=0.316 Sum_probs=48.0
Q ss_pred CCChhHHHHHHHHHHHHHhcCCcch---hh--------hHHHHHHHhccCCChhHHHHHHHHhhhcCCCCh-HHH---hh
Q psy11028 47 DPDSGVQSAAVNVVCELARKNPKNY---LS--------LAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEP-RLG---KK 111 (136)
Q Consensus 47 D~d~~V~~aal~l~~~l~~~~p~~~---~~--------lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~-~~~---~~ 111 (136)
.++..++-.+++++.|+...+|... .. ...+|.+++. .+|++.+.+-.++|..+....+ +.. ++
T Consensus 68 ~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~-~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~ 146 (312)
T PF03224_consen 68 SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLD-RNDSFIQLKAAFILTSLLSQGPKRSEKLVKE 146 (312)
T ss_dssp ---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S--SSHHHHHHHHHHHHHHHTSTTT--HHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhc-CCCHHHHHHHHHHHHHHHHcCCccccchHHH
Confidence 6799999999999999999998532 22 2345666554 4799999999999998854332 222 25
Q ss_pred hHHHHHHHHhc
Q psy11028 112 LIEPLTNLIHR 122 (136)
Q Consensus 112 l~e~l~~iL~~ 122 (136)
....+.+.|.+
T Consensus 147 ~l~~ll~~L~~ 157 (312)
T PF03224_consen 147 ALPKLLQWLSS 157 (312)
T ss_dssp HHHHHHHHHH-
T ss_pred HHHHHHHHHHH
Confidence 66666666654
No 105
>KOG1058|consensus
Probab=79.64 E-value=15 Score=34.16 Aligned_cols=81 Identities=19% Similarity=0.230 Sum_probs=52.4
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHh------------------------------------------HCCCCchhhHHH
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFL------------------------------------------KFPDALRPAFPR 40 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~------------------------------------------~~P~~v~~~~~~ 40 (136)
||.+.|++++--||+|+.--...+.. ++||.....++.
T Consensus 321 DvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ 400 (948)
T KOG1058|consen 321 DVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSL 400 (948)
T ss_pred HHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHH
Confidence 67777888888888887655554332 345555555666
Q ss_pred HHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhc
Q psy11028 41 LKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMT 83 (136)
Q Consensus 41 l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~ 83 (136)
+.+-+.|.|+--.++++..+-|..++.|+.--..+..+..-+.
T Consensus 401 ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~ii~~l~~~~~ 443 (948)
T KOG1058|consen 401 LLDFISDSNEAAASDVLMFVREAIEKFPNLRASIIEKLLETFP 443 (948)
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhhh
Confidence 6667777777777777777777777777544444444444433
No 106
>PTZ00479 RAP Superfamily; Provisional
Probab=79.46 E-value=9.6 Score=32.92 Aligned_cols=64 Identities=17% Similarity=0.115 Sum_probs=48.4
Q ss_pred hhhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccchhhhhhhcccCC
Q psy11028 72 LSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLSCWTGIKPMT 136 (136)
Q Consensus 72 ~~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~s~sv~~~~k~~~ 136 (136)
..+.-.+..-+-+. .|=..+|+...++.|+--+....+.+.+.+.+-|.+-.+.-.-++||++|
T Consensus 156 ~~~ak~vl~r~~~~-r~~dl~k~~nslakLg~~~~~l~k~l~~~~~~rle~~~~~~~r~~i~~it 219 (435)
T PTZ00479 156 SRFAKEVGEKFDDI-RTTDLIKICNSLAKLGGYTNNLKKFLSEKMVEKLESLFAQDFRNVVNDVT 219 (435)
T ss_pred HHHHHHHHhhcccc-CchhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhhcccchhhhcChhh
Confidence 33344444444343 55567899999999999888889999999999998888877777888875
No 107
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=78.45 E-value=3.2 Score=29.08 Aligned_cols=52 Identities=21% Similarity=0.301 Sum_probs=36.9
Q ss_pred hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCC--cchhhhHHHHHHHhccCCChh
Q psy11028 37 AFPRLKEKLEDPDSGVQSAAVNVVCELARKNP--KNYLSLAPVFFKLMTTSSNNW 89 (136)
Q Consensus 37 ~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p--~~~~~lvp~lv~iL~~v~~pW 89 (136)
.++-+.+.|.|.++.|+.+|+.++.+.+..+- +....+-|.+ .+|.....|.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~~~p~l-~~L~~~g~~L 62 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVSLRPSL-DHLGDIGSPL 62 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHHcCcHH-HHHHHcCHHH
Confidence 46889999999999999999999999998771 2223334443 4455444443
No 108
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=77.36 E-value=9.6 Score=30.58 Aligned_cols=57 Identities=19% Similarity=0.456 Sum_probs=38.3
Q ss_pred hhHHHHHHHhccCCChhHHHHHHHHhhhcCC-CC--hHHHhhhHHHHHHHHhccchhhhhh
Q psy11028 73 SLAPVFFKLMTTSSNNWMLIKIIKLFGALTP-LE--PRLGKKLIEPLTNLIHRIISLSCWT 130 (136)
Q Consensus 73 ~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~-~e--~~~~~~l~e~l~~iL~~~~s~sv~~ 130 (136)
+.+.-+.++|.+ +-+|+|.++|++|..+-+ .| .....+++.++.+.+++.-++-.+.
T Consensus 188 ~~l~~Ll~lL~n-~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t~~~~eAL~ 247 (262)
T PF14225_consen 188 QILTFLLGLLEN-GPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQTDLWMEALE 247 (262)
T ss_pred HHHHHHHHHHhC-CcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCCccHHHHHH
Confidence 334445555555 689999999999997754 11 1144568888888888877655443
No 109
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=77.36 E-value=23 Score=25.81 Aligned_cols=81 Identities=17% Similarity=0.184 Sum_probs=62.9
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCch------hhHHHHHhhcCC-CChhHHHHHHHHHHHHHhcCCc-chhhhH
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR------PAFPRLKEKLED-PDSGVQSAAVNVVCELARKNPK-NYLSLA 75 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~------~~~~~l~~lL~D-~d~~V~~aal~l~~~l~~~~p~-~~~~lv 75 (136)
+.+.|+|.+|.|--.|...+--+.+.+...+. .|.+.+.+++.+ .++.|-.=.+.++.+.+...+. .-.+.+
T Consensus 42 l~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i 121 (144)
T cd03568 42 IMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKNDPSLSLM 121 (144)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCcccHHH
Confidence 56778899999999988877777776665433 488899999998 7999999999999888776552 335578
Q ss_pred HHHHHHhcc
Q psy11028 76 PVFFKLMTT 84 (136)
Q Consensus 76 p~lv~iL~~ 84 (136)
..+++.|+.
T Consensus 122 ~~~y~~L~~ 130 (144)
T cd03568 122 SDLYKKLKN 130 (144)
T ss_pred HHHHHHHHH
Confidence 888888874
No 110
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=76.23 E-value=9.3 Score=27.33 Aligned_cols=49 Identities=14% Similarity=0.196 Sum_probs=39.0
Q ss_pred HHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh
Q psy11028 24 YKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL 72 (136)
Q Consensus 24 ~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~ 72 (136)
.++-..+|+......+.|.+.|+|+++-|-.=++-++-.++..-+..|.
T Consensus 26 a~~t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~ 74 (122)
T cd03572 26 AKLTRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFK 74 (122)
T ss_pred HHHHHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHH
Confidence 3444556677777889999999999999989999999999988776554
No 111
>KOG1048|consensus
Probab=75.96 E-value=34 Score=31.49 Aligned_cols=105 Identities=16% Similarity=0.202 Sum_probs=82.1
Q ss_pred hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchh-----hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCc--ch---
Q psy11028 2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRP-----AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK--NY--- 71 (136)
Q Consensus 2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~-----~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~--~~--- 71 (136)
++|...|.|++|.+.=-|+.=+.+++.-+-+.-.. .++++..+|+.++..|.-+++..+--++-.+-. ..
T Consensus 236 pe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai 315 (717)
T KOG1048|consen 236 PEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAI 315 (717)
T ss_pred HHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhh
Confidence 57889999999999988888888888777654332 589999999999999999999999888664432 22
Q ss_pred --hhhHHHHHHHhccCCChhHHHHHHHHhhhcCCCCh
Q psy11028 72 --LSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEP 106 (136)
Q Consensus 72 --~~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~ 106 (136)
..=+|.+++.|+.+.|-=+...|=.+|=.|...|.
T Consensus 316 ~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~ 352 (717)
T KOG1048|consen 316 KELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDA 352 (717)
T ss_pred hhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhH
Confidence 23489999999977677677777777777776654
No 112
>KOG0168|consensus
Probab=75.16 E-value=38 Score=32.08 Aligned_cols=125 Identities=14% Similarity=0.101 Sum_probs=83.8
Q ss_pred hhhhcCC-CChHHHHHHHHHHHHHHhHCCCCchh-----hHHHHHhhc-CCCChhHHHHHHHHHHHHHhcCCcchhhh--
Q psy11028 4 YFIYLTS-TKPYLRKKAVLMMYKVFLKFPDALRP-----AFPRLKEKL-EDPDSGVQSAAVNVVCELARKNPKNYLSL-- 74 (136)
Q Consensus 4 V~klL~~-s~~~VRKKA~l~~~rl~~~~P~~v~~-----~~~~l~~lL-~D~d~~V~~aal~l~~~l~~~~p~~~~~l-- 74 (136)
+..||+| .++-|-=-||-|++.+++.+|..... .++-+...| .=+-.-|.==++..+..|++.+|+.+.+.
T Consensus 216 Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~ 295 (1051)
T KOG0168|consen 216 LVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGA 295 (1051)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhccc
Confidence 4567765 77889999999999999999986542 445544444 33455566677888888899998765432
Q ss_pred ---HHHHHHHhccCCChhHHHHHHHHhh----hcCCCChHHHhhhHHHHHHHHhccchhhhhhhc
Q psy11028 75 ---APVFFKLMTTSSNNWMLIKIIKLFG----ALTPLEPRLGKKLIEPLTNLIHRIISLSCWTGI 132 (136)
Q Consensus 75 ---vp~lv~iL~~v~~pWlqikiLk~L~----~l~~~e~~~~~~l~e~l~~iL~~~~s~sv~~~~ 132 (136)
+=.+...+.. -.|-+-|-+-+ .+.++++..-.+-.+.+.++|+..+.+.+.+.+
T Consensus 296 l~a~LsylDFFSi----~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ 356 (1051)
T KOG0168|consen 296 LSAVLSYLDFFSI----HAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVC 356 (1051)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHH
Confidence 1122222221 12333344433 445788888888899999999999998887653
No 113
>KOG2160|consensus
Probab=74.45 E-value=49 Score=27.83 Aligned_cols=61 Identities=11% Similarity=0.191 Sum_probs=48.1
Q ss_pred CCCChHHHHHHHHHHHHHHhHCCCCchhh-----HHHHHhhcCC--CChhHHHHHHHHHHHHHhcCCc
Q psy11028 9 TSTKPYLRKKAVLMMYKVFLKFPDALRPA-----FPRLKEKLED--PDSGVQSAAVNVVCELARKNPK 69 (136)
Q Consensus 9 ~~s~~~VRKKA~l~~~rl~~~~P~~v~~~-----~~~l~~lL~D--~d~~V~~aal~l~~~l~~~~p~ 69 (136)
+++...+|.||..|+..++|.+|.....| +.-+++.|.+ .+.-...=++.++..+.+.++.
T Consensus 177 ~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s 244 (342)
T KOG2160|consen 177 SDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKS 244 (342)
T ss_pred cCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhh
Confidence 45777899999999999999999877653 6678999988 4555566677888888877653
No 114
>KOG1293|consensus
Probab=74.07 E-value=31 Score=31.45 Aligned_cols=92 Identities=13% Similarity=0.150 Sum_probs=62.0
Q ss_pred CCCChHHHHHHHHHHHHHHhHC----CCCch-hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCc---chh--hhHHHH
Q psy11028 9 TSTKPYLRKKAVLMMYKVFLKF----PDALR-PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK---NYL--SLAPVF 78 (136)
Q Consensus 9 ~~s~~~VRKKA~l~~~rl~~~~----P~~v~-~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~---~~~--~lvp~l 78 (136)
-+.+.-.+.-|++|+..+-|-. .+.-. +..+.+.++|.|++-.|+.+++++++-++-+... .|. ..+..+
T Consensus 387 ~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l 466 (678)
T KOG1293|consen 387 PIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDIL 466 (678)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHH
Confidence 4677888999999977655532 23111 3688999999999999999999999999876532 232 346666
Q ss_pred HHHhccCCChhHHHHHHHHhhhc
Q psy11028 79 FKLMTTSSNNWMLIKIIKLFGAL 101 (136)
Q Consensus 79 v~iL~~v~~pWlqikiLk~L~~l 101 (136)
.+.+++ +++=.--+-+.+|+.+
T Consensus 467 ~s~~~~-~~~n~r~~~~~~Lr~l 488 (678)
T KOG1293|consen 467 ESMLTD-PDFNSRANSLWVLRHL 488 (678)
T ss_pred HHHhcC-CCchHHHHHHHHHHHH
Confidence 666664 4444444445555543
No 115
>PF08568 Kinetochor_Ybp2: Uncharacterised protein family, YAP/Alf4/glomulin; InterPro: IPR013877 This is a family of proteins integrally involved in the central kinetochore. In baker's yeast the protein seems to be part of a macromolecular kinetochore complex and appears to contribute to the proper associations among the central kinetochore sub-complexes and the kinetochore-specific nucleosome. The family is localised in such a way as to bridge the COMA and Ndc80 complexes onto the centromeric nucleosome []. This family also includes aberrant root formation protein 4 and glomulin. Aberrant root formation protein 4 (Alf4) of Arabidopsis thaliana (Mouse-ear cress) is required for the initiation of lateral roots independent from auxin signalling. It may also function in maintaining the pericycle in the mitotically competent state needed for lateral root formation []. Glomulin (FAP68) is essential for normal development of the vasculature and may represent a naturally occurring ligand of the immunophilins FKBP59 and FKBP12 [, ].
Probab=73.63 E-value=30 Score=30.92 Aligned_cols=54 Identities=22% Similarity=0.381 Sum_probs=45.6
Q ss_pred CCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcC-CCChhHHHHHHHHHHHHH
Q psy11028 9 TSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLE-DPDSGVQSAAVNVVCELA 64 (136)
Q Consensus 9 ~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~-D~d~~V~~aal~l~~~l~ 64 (136)
.++++.+|+++.-.+.+++...|+-. -+.-++++|. .+.+|+-+++++.+-+..
T Consensus 452 ~~p~~~lR~~~~~ll~~iL~~~p~~~--rf~~i~dlLe~c~~~~~k~~~I~~lKd~i 506 (633)
T PF08568_consen 452 YCPSPELRKIAFTLLTRILHLFPEET--RFKFIRDLLENCPFESLKASAIGWLKDEI 506 (633)
T ss_pred cCCCHHHHHHHHHHHHHHHHHCCcHh--HHHHHHHHHhcCCCHhHHHHHHHHHHHHH
Confidence 67899999999999999999999966 3455677775 479999999999998774
No 116
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=72.84 E-value=50 Score=28.23 Aligned_cols=26 Identities=12% Similarity=0.213 Sum_probs=12.1
Q ss_pred HHHHHhccCCChhHHHHHHHHhhhcCC
Q psy11028 77 VFFKLMTTSSNNWMLIKIIKLFGALTP 103 (136)
Q Consensus 77 ~lv~iL~~v~~pWlqikiLk~L~~l~~ 103 (136)
.+...|++ ++|-+.-.-++.++.++.
T Consensus 151 ~L~~~L~d-~d~~Vra~A~raLG~l~~ 176 (410)
T TIGR02270 151 ALEAALTH-EDALVRAAALRALGELPR 176 (410)
T ss_pred HHHHHhcC-CCHHHHHHHHHHHHhhcc
Confidence 33334432 455555555555554443
No 117
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=72.32 E-value=37 Score=28.97 Aligned_cols=55 Identities=25% Similarity=0.272 Sum_probs=35.8
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHh
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELAR 65 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~ 65 (136)
+..+|++.+|.||.-++ +..-.... + -.+.+...|+|.|+.|-.+++..+-++..
T Consensus 122 L~~~L~~~~p~vR~aal-~al~~r~~--~----~~~~L~~~L~d~d~~Vra~A~raLG~l~~ 176 (410)
T TIGR02270 122 LEPLLAASEPPGRAIGL-AALGAHRH--D----PGPALEAALTHEDALVRAAALRALGELPR 176 (410)
T ss_pred HHHHhcCCChHHHHHHH-HHHHhhcc--C----hHHHHHHHhcCCCHHHHHHHHHHHHhhcc
Confidence 45677888888887555 44444322 2 23457777778888888888887766543
No 118
>KOG1242|consensus
Probab=71.59 E-value=36 Score=30.54 Aligned_cols=83 Identities=17% Similarity=0.198 Sum_probs=53.9
Q ss_pred hhhhhhcCCCChHHHHHHHHHHHHHHhHC-CCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch----hhhHH
Q psy11028 2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKF-PDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY----LSLAP 76 (136)
Q Consensus 2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~-P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~----~~lvp 76 (136)
+.|.....+..+.||..|..|+--+.+.. +..++.+.+.+..-+.+..=---.+++.++-.++...|++. ..++|
T Consensus 219 p~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP 298 (569)
T KOG1242|consen 219 PSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIP 298 (569)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhH
Confidence 45677788999999999999988877664 45677666554444433322333445555555666666543 45677
Q ss_pred HHHHHhcc
Q psy11028 77 VFFKLMTT 84 (136)
Q Consensus 77 ~lv~iL~~ 84 (136)
.+.+.|.+
T Consensus 299 ~lsevl~D 306 (569)
T KOG1242|consen 299 VLSEVLWD 306 (569)
T ss_pred HHHHHHcc
Confidence 77777774
No 119
>KOG0212|consensus
Probab=71.51 E-value=27 Score=31.55 Aligned_cols=93 Identities=18% Similarity=0.282 Sum_probs=63.9
Q ss_pred CCCChHHHHHHHHHHHHHHhHCCCC-----chhhHHHHHhhcCCCChhHHHHHHHHHHHH---HhcCCc--chhhhHHHH
Q psy11028 9 TSTKPYLRKKAVLMMYKVFLKFPDA-----LRPAFPRLKEKLEDPDSGVQSAAVNVVCEL---ARKNPK--NYLSLAPVF 78 (136)
Q Consensus 9 ~~s~~~VRKKA~l~~~rl~~~~P~~-----v~~~~~~l~~lL~D~d~~V~~aal~l~~~l---~~~~p~--~~~~lvp~l 78 (136)
...+|+.|+- ++--++.....|+. ++++.+-+-++|.|+++.|-.-+=+++.++ .+..|. .|...++.+
T Consensus 177 y~~n~~tR~f-lv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vl 255 (675)
T KOG0212|consen 177 YVINPMTRQF-LVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVL 255 (675)
T ss_pred hcCCchHHHH-HHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhc
Confidence 4567888764 44445555666653 345788899999999999984444433333 235665 467778888
Q ss_pred HHHhccCCChhHHHHHHHHhhhcCC
Q psy11028 79 FKLMTTSSNNWMLIKIIKLFGALTP 103 (136)
Q Consensus 79 v~iL~~v~~pWlqikiLk~L~~l~~ 103 (136)
+..+.. +.|++|-+.|.-++-+.+
T Consensus 256 v~~l~s-s~~~iq~~al~Wi~efV~ 279 (675)
T KOG0212|consen 256 VPHLQS-SEPEIQLKALTWIQEFVK 279 (675)
T ss_pred cccccC-CcHHHHHHHHHHHHHHhc
Confidence 877765 899999888877776643
No 120
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=71.42 E-value=28 Score=23.32 Aligned_cols=52 Identities=21% Similarity=0.191 Sum_probs=38.0
Q ss_pred ChHHHHHHHHHHHHHHhHCCCCchh----hHHHHHhhcCC--CChhHHHHHHHHHHHH
Q psy11028 12 KPYLRKKAVLMMYKVFLKFPDALRP----AFPRLKEKLED--PDSGVQSAAVNVVCEL 63 (136)
Q Consensus 12 ~~~VRKKA~l~~~rl~~~~P~~v~~----~~~~l~~lL~D--~d~~V~~aal~l~~~l 63 (136)
+=.+|..|+-.+..+++++.+.-.. ....+.+.+.| +..+..-.|+.-+.++
T Consensus 19 h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 19 HWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred hHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 3389999999999999997765544 45556666665 4666777777666665
No 121
>KOG1061|consensus
Probab=71.37 E-value=10 Score=34.79 Aligned_cols=92 Identities=20% Similarity=0.231 Sum_probs=73.0
Q ss_pred CChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhccCCChhH
Q psy11028 11 TKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWM 90 (136)
Q Consensus 11 s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~~v~~pWl 90 (136)
-++-.=+||+-|+.++=.+..+. .+.++.+.+++.=+--.|+.-++.++.++.++.|..|...++.+..-+.+..+|=.
T Consensus 362 vD~~fvrkaIraig~~aik~e~~-~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~~vv~~l~~~~~sl~epea 440 (734)
T KOG1061|consen 362 VDVDFVRKAVRAIGRLAIKAEQS-NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYESVVAILCENLDSLQEPEA 440 (734)
T ss_pred hCHHHHHHHHHHhhhhhhhhhhh-hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchhhhhhhhcccccccCChHH
Confidence 34555678999999999998887 77889999999866666777888899999999999999899988888887777766
Q ss_pred HHHHHHHhhhcCC
Q psy11028 91 LIKIIKLFGALTP 103 (136)
Q Consensus 91 qikiLk~L~~l~~ 103 (136)
--.+.=+++.++.
T Consensus 441 k~amiWilg~y~~ 453 (734)
T KOG1061|consen 441 KAALIWILGEYAE 453 (734)
T ss_pred HHHHHHHHhhhhh
Confidence 5555555555553
No 122
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=70.89 E-value=6.3 Score=38.79 Aligned_cols=98 Identities=22% Similarity=0.315 Sum_probs=65.5
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHhHCCCCch-hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhc
Q psy11028 5 FIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMT 83 (136)
Q Consensus 5 ~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~ 83 (136)
..+|.+.++.|+.-++.....+|....+... ..+..+..-+++.+..-+.+|+.++++++..+|+.-..+..-+-++|-
T Consensus 441 ~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~~fa~~l~giLD 520 (1426)
T PF14631_consen 441 QSLLRSKEPSVREFGSHLYKYLFKEFDSYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQPFATFLKGILD 520 (1426)
T ss_dssp HHHHTSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHTHHHHHGGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 3577899999999999999888888743222 456666666667677777899999999999999877766666666664
Q ss_pred cC-CChhHHH-HHHHHhhhcC
Q psy11028 84 TS-SNNWMLI-KIIKLFGALT 102 (136)
Q Consensus 84 ~v-~~pWlqi-kiLk~L~~l~ 102 (136)
-. .=..-|| ++.++|..++
T Consensus 521 ~l~~Ls~~qiR~lf~il~~La 541 (1426)
T PF14631_consen 521 YLDNLSLQQIRKLFDILCTLA 541 (1426)
T ss_dssp GGGG--HHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHh
Confidence 32 1122333 3445555554
No 123
>KOG1293|consensus
Probab=70.64 E-value=86 Score=28.69 Aligned_cols=116 Identities=12% Similarity=0.130 Sum_probs=82.6
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCc-----chhhh
Q psy11028 5 FIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK-----NYLSL 74 (136)
Q Consensus 5 ~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~-----~~~~l 74 (136)
.++++.+.-.|.+.+.=++--+.-.+.+.=+ ++++.+.+++.|.|+.+-..++.++..+.-..-+ .+.++
T Consensus 425 vqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki 504 (678)
T KOG1293|consen 425 VQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKI 504 (678)
T ss_pred HHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 4566788888988888887777766655432 4789999999999999999999999888654432 12233
Q ss_pred HHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHH
Q psy11028 75 APVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLI 120 (136)
Q Consensus 75 vp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL 120 (136)
--.++-.+-+=|++=.|-..+++|+.|..+.-+.-+-+.+..-+++
T Consensus 505 ~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~~~~~~l 550 (678)
T KOG1293|consen 505 PANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLEKFKDVL 550 (678)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHhhhHHH
Confidence 3334444555589999999999999998874444444444444444
No 124
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=70.30 E-value=49 Score=25.71 Aligned_cols=73 Identities=10% Similarity=0.030 Sum_probs=46.5
Q ss_pred CChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHH
Q psy11028 48 PDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLI 120 (136)
Q Consensus 48 ~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL 120 (136)
.+--+..+.-+.+.++|+.+|+...++++.+..+|++-.++=.+.--|+.++.+.+.+--...+....+...+
T Consensus 96 ~~~~~~i~~a~s~~~ic~~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~vl~~~l 168 (234)
T PF12530_consen 96 EFWECLISIAASIRDICCSRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWKVLQKKL 168 (234)
T ss_pred chHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhc
Confidence 3444555555778888888888777888888888854466667777777777777544322333333344433
No 125
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=69.56 E-value=21 Score=29.28 Aligned_cols=32 Identities=25% Similarity=0.295 Sum_probs=29.7
Q ss_pred hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcC
Q psy11028 36 PAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67 (136)
Q Consensus 36 ~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~ 67 (136)
.-.+++..+|+..|+.|+.+++.++..+++++
T Consensus 26 sS~e~L~~LL~s~~~dVl~~aL~ll~~l~qr~ 57 (329)
T PF06012_consen 26 SSSEHLNSLLNSTDLDVLLAALRLLLRLAQRY 57 (329)
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHHhhh
Confidence 35899999999999999999999999999985
No 126
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=69.52 E-value=27 Score=24.90 Aligned_cols=63 Identities=19% Similarity=0.254 Sum_probs=46.3
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhccCCChhHHHHHHHHhhhcCC
Q psy11028 40 RLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTP 103 (136)
Q Consensus 40 ~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~ 103 (136)
.+.+.-.|.+.+.-.-...=+.++...+++.|..+...|.+-|+. .+|-...|.|+++.+++.
T Consensus 5 ll~~ATsdd~~p~pgy~~~Eia~~t~~s~~~~~ei~d~L~kRL~~-~~~hVK~K~Lrilk~l~~ 67 (122)
T cd03572 5 LLSKATSDDDEPTPGYLYEEIAKLTRKSVGSCQELLEYLLKRLKR-SSPHVKLKVLKIIKHLCE 67 (122)
T ss_pred HHHHHhcCCCCCCchHHHHHHHHHHHcCHHHHHHHHHHHHHHhcC-CCCcchHHHHHHHHHHHh
Confidence 345555565555544445555556667888898999999999988 679999999999998763
No 127
>PF11099 M11L: Apoptosis regulator M11L like; InterPro: IPR021119 This entry includes the poxvirus familes F1 and C10. C10 proteins are apoptosis regulators, which function to modulate the apoptotic cascades and thereby favour productive viral replication. One of these, M11L inhibits mitochondrial-dependent apoptosis by mimicking and competing with host proteins for the binding and blocking of Bak and Bax, two executioner proteins []. The poxvirus F1 family are a family of conserved proteins related to Vaccinia virus protein F1L. They have no known function.; PDB: 2O42_B 2JBY_A 2JBX_B 2VTY_A.
Probab=69.40 E-value=7.7 Score=29.35 Aligned_cols=34 Identities=18% Similarity=0.135 Sum_probs=24.7
Q ss_pred hhhHHHHHhhcC-CCChhHHHHHHHHHHHHHhcCC
Q psy11028 35 RPAFPRLKEKLE-DPDSGVQSAAVNVVCELARKNP 68 (136)
Q Consensus 35 ~~~~~~l~~lL~-D~d~~V~~aal~l~~~l~~~~p 68 (136)
++....+...|. |+.|||-+|+++++..++++..
T Consensus 63 ~~Ikn~v~~~L~~D~rpsVkLAtISLiS~I~~k~~ 97 (167)
T PF11099_consen 63 DDIKNEVIEILLSDNRPSVKLATISLISIIIEKWG 97 (167)
T ss_dssp HHHHHHHHHHCCHT--HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhccCCCceeehHHHHHHHHHHHHh
Confidence 345556666665 8999999999999999998763
No 128
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=68.68 E-value=39 Score=23.89 Aligned_cols=80 Identities=11% Similarity=0.083 Sum_probs=55.3
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCch------hhHHHHHhhcCC---CChhHHHHHHHHHHHHHhcCCc--chh
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR------PAFPRLKEKLED---PDSGVQSAAVNVVCELARKNPK--NYL 72 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~------~~~~~l~~lL~D---~d~~V~~aal~l~~~l~~~~p~--~~~ 72 (136)
+.+.|++++|.+.-.|...+=-+.+...+.+. .|.+.+.+++.+ .++.|-.-.+.++.+.....+. .-.
T Consensus 42 L~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~~~~~~ 121 (133)
T cd03561 42 IRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGGHSEDL 121 (133)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 56778899999999998777777666655332 466678888876 4778888888888887775553 223
Q ss_pred hhHHHHHHHhc
Q psy11028 73 SLAPVFFKLMT 83 (136)
Q Consensus 73 ~lvp~lv~iL~ 83 (136)
+.+..+++.|+
T Consensus 122 ~~~~~~y~~lk 132 (133)
T cd03561 122 PGIEDAYKLLK 132 (133)
T ss_pred hHHHHHHHHHh
Confidence 34445555443
No 129
>KOG1078|consensus
Probab=67.55 E-value=34 Score=31.93 Aligned_cols=116 Identities=16% Similarity=0.257 Sum_probs=75.6
Q ss_pred hhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHh-cCCcchhhhHHHHHHHhcc
Q psy11028 6 IYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELAR-KNPKNYLSLAPVFFKLMTT 84 (136)
Q Consensus 6 klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~-~~p~~~~~lvp~lv~iL~~ 84 (136)
-++++.++..|=+|+..+.++-.++|+.+..--..+..++.|+|-++.+=|++.+..-.. .+-+...+.++.+++=+..
T Consensus 289 ~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disD 368 (865)
T KOG1078|consen 289 LFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISD 368 (865)
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccc
Confidence 355889999999999999999999999998877778899999999988877776654432 2223333344444443321
Q ss_pred --------------CCChhHHHHHHHHhhhcCCCC--hHHHhhhHHHHHHHHh
Q psy11028 85 --------------SSNNWMLIKIIKLFGALTPLE--PRLGKKLIEPLTNLIH 121 (136)
Q Consensus 85 --------------v~~pWlqikiLk~L~~l~~~e--~~~~~~l~e~l~~iL~ 121 (136)
..-|-.+.-++.+|..+-.+| -+..+.+.|.+..++.
T Consensus 369 eFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie 421 (865)
T KOG1078|consen 369 EFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIE 421 (865)
T ss_pred cceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHH
Confidence 134445555566665443333 2345566666666665
No 130
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=67.50 E-value=45 Score=28.25 Aligned_cols=63 Identities=10% Similarity=0.141 Sum_probs=46.2
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcC-----CCChhHHHHHHHHHHHHHhc
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLE-----DPDSGVQSAAVNVVCELARK 66 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~-----D~d~~V~~aal~l~~~l~~~ 66 (136)
+..++++.+|.-|......++|+|.+.++.-......+.+.+. +.+|--++-.+-++..+.+.
T Consensus 138 Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~g 205 (409)
T PF01603_consen 138 LLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIING 205 (409)
T ss_dssp HHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhc
Confidence 5667899999999999999999999999988776666666553 45555566667777666653
No 131
>PTZ00479 RAP Superfamily; Provisional
Probab=67.18 E-value=34 Score=29.66 Aligned_cols=81 Identities=19% Similarity=0.177 Sum_probs=72.0
Q ss_pred ChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccchhhh
Q psy11028 49 DSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLSC 128 (136)
Q Consensus 49 d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~s~sv 128 (136)
|++-++|++.....+-++|-+.|..+.+.+..+... -.|.-...|+--|+.+.-.+.+.-+++.+...+.|.+-.|.++
T Consensus 59 d~~~is~~vqkaat~rkhD~~Lw~~f~~Rilel~dt-L~Pqqig~Ilyg~gKsr~~~~efy~~~~~~v~~~L~~fssh~L 137 (435)
T PTZ00479 59 DGWYLSACVQKAATLRKHDLELWHGFTNRLLELSDT-LTPQQIGYIFYGYGKSRFLNPEFYEKMLKFVQPLLPNFYSHSL 137 (435)
T ss_pred CHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhhcCccHH
Confidence 677788888888888889999999999999999877 4899999999999999988899999999999999998888776
Q ss_pred hh
Q psy11028 129 WT 130 (136)
Q Consensus 129 ~~ 130 (136)
..
T Consensus 138 ~~ 139 (435)
T PTZ00479 138 MC 139 (435)
T ss_pred HH
Confidence 54
No 132
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=67.11 E-value=31 Score=28.97 Aligned_cols=111 Identities=14% Similarity=0.178 Sum_probs=65.2
Q ss_pred hHHHHHHHH-HHHHHHhHCCCCchh-hHHHHHhhcC------CCChhHHHHHHHHHHHHHhcCCc---------------
Q psy11028 13 PYLRKKAVL-MMYKVFLKFPDALRP-AFPRLKEKLE------DPDSGVQSAAVNVVCELARKNPK--------------- 69 (136)
Q Consensus 13 ~~VRKKA~l-~~~rl~~~~P~~v~~-~~~~l~~lL~------D~d~~V~~aal~l~~~l~~~~p~--------------- 69 (136)
-+=|++|+. .+..+.++.++.+.. +...+.+.|. ..|.---=+|+.++..++.+.-.
T Consensus 224 ~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~ 303 (370)
T PF08506_consen 224 SDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVV 303 (370)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HH
T ss_pred cCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHH
Confidence 334444554 455677777776654 4566777775 35667777899999999775421
Q ss_pred -chh-hhHHHHHHHhccCCChhHHHHHHHHhhhcCC-CChHHHhhhHHHHHHHHhccch
Q psy11028 70 -NYL-SLAPVFFKLMTTSSNNWMLIKIIKLFGALTP-LEPRLGKKLIEPLTNLIHRIIS 125 (136)
Q Consensus 70 -~~~-~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~-~e~~~~~~l~e~l~~iL~~~~s 125 (136)
.|. ...|.+. =.....||++...+|++..|.. -.+.....+.+.+.+.|++.+-
T Consensus 304 ~Ff~~~v~peL~--~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~ 360 (370)
T PF08506_consen 304 DFFSQHVLPELQ--PDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSY 360 (370)
T ss_dssp HHHHHHTCHHHH---SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-H
T ss_pred HHHHHHhHHHhc--ccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCc
Confidence 111 1133332 1234789999999999999874 3344555667777777765543
No 133
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=66.40 E-value=38 Score=30.91 Aligned_cols=127 Identities=16% Similarity=0.092 Sum_probs=92.8
Q ss_pred cCCCChHHHHHHHHHHHHHHhHCCCCchh--hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCc--chhhhHH----HHH
Q psy11028 8 LTSTKPYLRKKAVLMMYKVFLKFPDALRP--AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK--NYLSLAP----VFF 79 (136)
Q Consensus 8 L~~s~~~VRKKA~l~~~rl~~~~P~~v~~--~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~--~~~~lvp----~lv 79 (136)
+.+-++.+|=-+.++++--+..+|+.+-. +..+..=+|.|.+-||=.-++..+-.++.++|. ..+.++. .++
T Consensus 284 y~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~rIL 363 (740)
T COG5537 284 YIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDRIL 363 (740)
T ss_pred ccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 35677888888888888888889998753 678888899999999999999999999999984 2233333 333
Q ss_pred HHhcc-CC-ChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhc---cchhhhhhhccc
Q psy11028 80 KLMTT-SS-NNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHR---IISLSCWTGIKP 134 (136)
Q Consensus 80 ~iL~~-v~-~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~---~~s~sv~~~~k~ 134 (136)
.++.. +. ---.-+|.+.-++.+|-.+..+...+.-+|-++.-. +...+|.+-+|.
T Consensus 364 E~~r~D~d~VRi~sik~l~~lr~lg~L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK~ 423 (740)
T COG5537 364 EFLRTDSDCVRICSIKSLCYLRILGVLSSSEILIVSSCMLDIIPDSRENIVESVESICKI 423 (740)
T ss_pred HHHhhccchhhHHHHHHHHHHHHhcccchhHHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence 33332 11 122567788888888988888888888888887765 566666665553
No 134
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=65.43 E-value=32 Score=31.26 Aligned_cols=72 Identities=26% Similarity=0.289 Sum_probs=55.5
Q ss_pred ChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhc-CCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhc
Q psy11028 12 KPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKL-EDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMT 83 (136)
Q Consensus 12 ~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL-~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~ 83 (136)
++.=|-.|..-+-.+++..|.-+. ++++.+.+.| .|.|..|+++|+.+++-+.-+-|.....+.|.++.|..
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~~Lf~If~ 158 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLPDLFNIFG 158 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHH
Confidence 455677778888889999887554 2555555544 69999999999999999998888777777777777665
No 135
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=65.36 E-value=12 Score=19.94 Aligned_cols=28 Identities=29% Similarity=0.376 Sum_probs=22.1
Q ss_pred hHHHHHhhcCCCChhHHHHHHHHHHHHH
Q psy11028 37 AFPRLKEKLEDPDSGVQSAAVNVVCELA 64 (136)
Q Consensus 37 ~~~~l~~lL~D~d~~V~~aal~l~~~l~ 64 (136)
.++.+.++|.+.|+.+...++.++..++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5677888888888888888888877664
No 136
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=64.59 E-value=48 Score=24.54 Aligned_cols=105 Identities=17% Similarity=0.234 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhccC--CChhHHHHHH
Q psy11028 18 KAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTS--SNNWMLIKII 95 (136)
Q Consensus 18 KA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~~v--~~pWlqikiL 95 (136)
=+.--+.++++..++...+.++.+.+.+-....+..+--+-++.++++++|-...++...+..++..+ -.+=.-+.++
T Consensus 37 LG~~IL~~~fk~h~~~r~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~p~~vle~~~~l~~~ld~l~~lp~~~a~~ll 116 (158)
T PF14676_consen 37 LGIQILLELFKVHEMIRSEILEQLLNRIVTKSSSPSSQYIDLLSELVRKAPLTVLECSSKLKELLDYLSFLPGDVAIGLL 116 (158)
T ss_dssp HHHHHHHHHHHH-GGGHHHHHHHHHHHHHH--SS--HHHHHHHHHHHHH-HHHHS-S-HHHHGGGGGTTTS-HHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 45566788999999888887777666663332222234578889999999877777777776666542 2222345666
Q ss_pred HHhhhcCCCChHHHhhhHHHHHHHHhc
Q psy11028 96 KLFGALTPLEPRLGKKLIEPLTNLIHR 122 (136)
Q Consensus 96 k~L~~l~~~e~~~~~~l~e~l~~iL~~ 122 (136)
+.+.=+...+++..+.++..+...+-+
T Consensus 117 ~Al~PLi~~s~~lrd~lilvLRKamf~ 143 (158)
T PF14676_consen 117 RALLPLIKFSPSLRDSLILVLRKAMFS 143 (158)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHcc
Confidence 666666666666666666666665543
No 137
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=64.25 E-value=87 Score=26.34 Aligned_cols=115 Identities=17% Similarity=0.199 Sum_probs=73.2
Q ss_pred cCCCChHHHHHHHHHHHHHHhHCCCCch--hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCC-----------------
Q psy11028 8 LTSTKPYLRKKAVLMMYKVFLKFPDALR--PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNP----------------- 68 (136)
Q Consensus 8 L~~s~~~VRKKA~l~~~rl~~~~P~~v~--~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p----------------- 68 (136)
-.+.++-.|.-|...+.-+...+|+++- +.+.-+.+.+.|....+..+.+..+..+...-.
T Consensus 117 ae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~ap 196 (371)
T PF14664_consen 117 AEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAP 196 (371)
T ss_pred HhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHh
Confidence 3567888899999999999999999875 367777777777666666666666666644211
Q ss_pred ---------------cchhhhHHHHHHHhcc-------CCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccc
Q psy11028 69 ---------------KNYLSLAPVFFKLMTT-------SSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRII 124 (136)
Q Consensus 69 ---------------~~~~~lvp~lv~iL~~-------v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~ 124 (136)
+.+....-.++.+|++ ..+++--+|- ++..|.-+.++.++.+.|.+.++++-..
T Consensus 197 ftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lks--Lv~~L~~p~~~ir~~Ildll~dllrik~ 272 (371)
T PF14664_consen 197 FTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKS--LVDSLRLPNPEIRKAILDLLFDLLRIKP 272 (371)
T ss_pred hhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHH--HHHHHcCCCHHHHHHHHHHHHHHHCCCC
Confidence 0111222233334442 2333322222 3445666778899999999999997443
No 138
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=63.48 E-value=24 Score=24.31 Aligned_cols=46 Identities=15% Similarity=0.361 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhc-CCcchhhhHHHHHHHhccCCChhHHHHHHHHhhhcC
Q psy11028 55 AAVNVVCELARK-NPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALT 102 (136)
Q Consensus 55 aal~l~~~l~~~-~p~~~~~lvp~lv~iL~~v~~pWlqikiLk~L~~l~ 102 (136)
-...++.+++.+ .|+.|.++.+.+++.+.+ +|......|++|+.+.
T Consensus 7 kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~--~~~~~~~~L~iL~~l~ 53 (148)
T PF08389_consen 7 KLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS--SPQHLELVLRILRILP 53 (148)
T ss_dssp HHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT--THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHChhhCchHHHHHHHHhcc--chhHHHHHHHHHHHHH
Confidence 334455666664 599999999999999987 5777777788877775
No 139
>KOG0413|consensus
Probab=63.40 E-value=8.2 Score=36.97 Aligned_cols=80 Identities=13% Similarity=0.131 Sum_probs=65.1
Q ss_pred CChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCC-CChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhccCCChh
Q psy11028 11 TKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLED-PDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNW 89 (136)
Q Consensus 11 s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D-~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~~v~~pW 89 (136)
-.+.||--+++.+.+|+..+-++....+|-+.+-|.- .++.+=.+.+-+++++|.++.-.....+|.+..-|+. |+|+
T Consensus 943 ~~~~vra~~vvTlakmcLah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~D-p~~i 1021 (1529)
T KOG0413|consen 943 FSDKVRAVGVVTLAKMCLAHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCD-PSVI 1021 (1529)
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcC-chHH
Confidence 3577999999999999999988888888888888854 5777778888889999998876667778888888876 5665
Q ss_pred HH
Q psy11028 90 ML 91 (136)
Q Consensus 90 lq 91 (136)
.-
T Consensus 1022 VR 1023 (1529)
T KOG0413|consen 1022 VR 1023 (1529)
T ss_pred HH
Confidence 43
No 140
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=62.94 E-value=55 Score=30.12 Aligned_cols=89 Identities=17% Similarity=0.140 Sum_probs=60.0
Q ss_pred hHHHHHhhcCCCChhHHHHHHHHHHHHHh--cCCcc--hhhhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChH----H
Q psy11028 37 AFPRLKEKLEDPDSGVQSAAVNVVCELAR--KNPKN--YLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPR----L 108 (136)
Q Consensus 37 ~~~~l~~lL~D~d~~V~~aal~l~~~l~~--~~p~~--~~~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~----~ 108 (136)
.++.+.++|+..+..++.++++++..++- .|-+. -...+|++.+++.. .++=++-.-|++|..|+.+... .
T Consensus 291 iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s-~~~~l~~~aLrlL~NLSfd~~~R~~mV 369 (708)
T PF05804_consen 291 IVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPS-ENEDLVNVALRLLFNLSFDPELRSQMV 369 (708)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcC-CCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 46667788887888888888888877754 22222 12468888888875 5666777788888888766421 2
Q ss_pred HhhhHHHHHHHHhccchh
Q psy11028 109 GKKLIEPLTNLIHRIISL 126 (136)
Q Consensus 109 ~~~l~e~l~~iL~~~~s~ 126 (136)
...+++.+.++|+..+..
T Consensus 370 ~~GlIPkLv~LL~d~~~~ 387 (708)
T PF05804_consen 370 SLGLIPKLVELLKDPNFR 387 (708)
T ss_pred HCCCcHHHHHHhCCCchH
Confidence 334567777888766543
No 141
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=62.81 E-value=95 Score=29.21 Aligned_cols=111 Identities=13% Similarity=0.170 Sum_probs=77.4
Q ss_pred CCCChHHHHHHHHHHHHHHhHCCCCchhh------------HHHHHhhcCC-----CChhHHHHHHHHHHHHHhcCCcch
Q psy11028 9 TSTKPYLRKKAVLMMYKVFLKFPDALRPA------------FPRLKEKLED-----PDSGVQSAAVNVVCELARKNPKNY 71 (136)
Q Consensus 9 ~~s~~~VRKKA~l~~~rl~~~~P~~v~~~------------~~~l~~lL~D-----~d~~V~~aal~l~~~l~~~~p~~~ 71 (136)
+++. .-|..|.-.++.-++.+|-.++.| .+++++++.+ +||.-+-|.+..+ +..||..|
T Consensus 716 ~~~~-~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~~~~~~~~v~~l~~h~~f~~~npn~~ral~~~f---~~~n~~~f 791 (863)
T TIGR02414 716 HFES-DFRERALAAFYQKWKDDPLVMDKWFALQATSPRPDTLERVKALLQHPAFDLKNPNRVRALIGAF---ANNNLVRF 791 (863)
T ss_pred cCCC-hhHHHHHHHHHHHHCCCchhHHHHHHHHhCCCcccHHHHHHHHhcCCCCCcCCCcHHHHHHHHH---HhcCcccc
Confidence 3344 488888888999889998766643 5677777765 4666666655554 33455433
Q ss_pred -------hhhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccc
Q psy11028 72 -------LSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRII 124 (136)
Q Consensus 72 -------~~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~ 124 (136)
..++-..+--|-. -||=.--++++.|......|+.-.......+..|+...+
T Consensus 792 h~~~g~gy~~~~~~i~~ld~-~Np~~aarl~~~~~~w~~~~~~r~~~m~~~l~~i~~~~~ 850 (863)
T TIGR02414 792 HDISGSGYRFLADQIIAIDR-FNPQVAARLLEPLTRWRKLDPKRQELMKAALERIAAEEN 850 (863)
T ss_pred cCCCCcHHHHHHHHHHHhcC-cCHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHhCcC
Confidence 1344443333434 599999999999999999998888888888888877644
No 142
>KOG1820|consensus
Probab=62.80 E-value=1e+02 Score=28.91 Aligned_cols=122 Identities=16% Similarity=0.131 Sum_probs=82.9
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHCC-CCchh----hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhh---
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFP-DALRP----AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSL--- 74 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P-~~v~~----~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~l--- 74 (136)
++...+.|++--=|+.|.-.+...+..-. +..+. ....+...+.|.|..|+.-+...+..|+...+..|+++
T Consensus 257 ~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~ 336 (815)
T KOG1820|consen 257 NLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKN 336 (815)
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHh
Confidence 56677889999999999999999998777 44443 33456666789999999999999999999888777655
Q ss_pred -HHHHHHHhccCCChhHH----------------HHHHHHh-hhcCCCChHHHhhhHHHHHHHHhccch
Q psy11028 75 -APVFFKLMTTSSNNWML----------------IKIIKLF-GALTPLEPRLGKKLIEPLTNLIHRIIS 125 (136)
Q Consensus 75 -vp~lv~iL~~v~~pWlq----------------ikiLk~L-~~l~~~e~~~~~~l~e~l~~iL~~~~s 125 (136)
.|.+..-++. .-+.+. -++.+.. ..+...+|+....+...+...++..++
T Consensus 337 v~p~lld~lke-kk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 337 VFPSLLDRLKE-KKSELRDALLKALDAILNSTPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred hcchHHHHhhh-ccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC
Confidence 3444444442 111111 1122221 234556677777777777777776664
No 143
>KOG2199|consensus
Probab=62.57 E-value=91 Score=27.05 Aligned_cols=64 Identities=14% Similarity=0.167 Sum_probs=47.2
Q ss_pred HHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh------hhHHHHHHHhcc
Q psy11028 21 LMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL------SLAPVFFKLMTT 84 (136)
Q Consensus 21 l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~------~lvp~lv~iL~~ 84 (136)
|.+--.+-.+|+.-.+.+..+.++|+..||-|++-|++++-.++++=.+.|+ .|...|..++.+
T Consensus 30 lDvCD~v~~~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~ 99 (462)
T KOG2199|consen 30 LDVCDKVGSDPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIES 99 (462)
T ss_pred HHHHHhhcCCCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhh
Confidence 3333344456777778899999999999999999999999888776655543 456666666653
No 144
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=61.89 E-value=37 Score=25.97 Aligned_cols=70 Identities=20% Similarity=0.163 Sum_probs=52.4
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhH
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLA 75 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lv 75 (136)
+.+...+.+.+.|+-|+.+..+..+. .+ .+...+.+...+.|++.=|--|.-=.+-+++++||+.-..++
T Consensus 120 l~~W~~s~~~W~rR~ai~~~l~~~~~-~~-~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~V~~fl 189 (208)
T cd07064 120 MDEWSTDENFWLRRTAILHQLKYKEK-TD-TDLLFEIILANLGSKEFFIRKAIGWALREYSKTNPDWVRDFV 189 (208)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHc-cC-HHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 34445788999999999987775554 23 344666778888899888888888899999999987544443
No 145
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=61.63 E-value=28 Score=24.83 Aligned_cols=62 Identities=23% Similarity=0.211 Sum_probs=43.2
Q ss_pred hhc-CCCChHHHHHHHHHHHHHHhHCCCCch---h--hHHHHHhhcCCCChhHHHHHHHHHHHHHhcC
Q psy11028 6 IYL-TSTKPYLRKKAVLMMYKVFLKFPDALR---P--AFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67 (136)
Q Consensus 6 klL-~~s~~~VRKKA~l~~~rl~~~~P~~v~---~--~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~ 67 (136)
++| ++.++-+---||.=+-.+++.+|+.-. . ..+++-+++.++|+.|---|+-.++.+..++
T Consensus 50 ~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 117 (119)
T PF11698_consen 50 KLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVNN 117 (119)
T ss_dssp HHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHHS
T ss_pred HHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 444 445666666777777888888887533 2 4678888888899999888888887776543
No 146
>PF04858 TH1: TH1 protein; InterPro: IPR006942 TH1 is a highly conserved but uncharacterised metazoan protein. No homologue has been identified in Caenorhabditis elegans []. TH1 binds specifically to A-Raf kinase [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=60.85 E-value=75 Score=28.60 Aligned_cols=116 Identities=16% Similarity=0.170 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh---hhHHHHHHHhcc--CCChhHH
Q psy11028 17 KKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL---SLAPVFFKLMTT--SSNNWML 91 (136)
Q Consensus 17 KKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~---~lvp~lv~iL~~--v~~pWlq 91 (136)
++|+-.++.+++.....-......+.+++.-=+.-|+++++=-..+-.-.+|+.|+ .+.|.+..+|+. ...|-++
T Consensus 382 ~~ale~a~~ic~~~~~g~~~~~~el~~L~~~i~~PvVa~GVL~wi~~~l~~~~~~~~~~~~~p~~L~LLdeIa~~Hp~lr 461 (584)
T PF04858_consen 382 KQALEKAHAICCNAARGSSELQAELPKLYSCIRYPVVAMGVLRWIESFLTDPSYFSSITELTPVHLALLDEIATRHPLLR 461 (584)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHhCCChhhHHHHHHHHHHhcCcchhhhccccCchHHHHhhHHHhcCHhhH
Confidence 56777777777654433223334444443322344555554444444556776444 468888889986 4899999
Q ss_pred HHHHHHhhhcCC-----CCh----HHHhhhHHHHHHHHhccchhhhhhhc
Q psy11028 92 IKIIKLFGALTP-----LEP----RLGKKLIEPLTNLIHRIISLSCWTGI 132 (136)
Q Consensus 92 ikiLk~L~~l~~-----~e~----~~~~~l~e~l~~iL~~~~s~sv~~~~ 132 (136)
..+|++|..+-. .++ +..+.++|.+..++...-.-=|++.+
T Consensus 462 ~~vl~lL~~~le~~~~~l~~l~~le~kr~ilD~~V~L~s~G~VlPVl~~i 511 (584)
T PF04858_consen 462 PSVLDLLVRLLESEGDELDILVQLELKRTILDRMVHLLSRGYVLPVLEYI 511 (584)
T ss_pred HHHHHHHHHHHHccCCcccHHHHHHHHHHHHHHHHHHHhCCeeehHHHHH
Confidence 999999986632 122 45667888888888765554444443
No 147
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=60.79 E-value=69 Score=25.56 Aligned_cols=55 Identities=31% Similarity=0.421 Sum_probs=29.4
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcC-CCChhHHHHHHHHHHHHHh
Q psy11028 5 FIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLE-DPDSGVQSAAVNVVCELAR 65 (136)
Q Consensus 5 ~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~-D~d~~V~~aal~l~~~l~~ 65 (136)
.+++.+.++.||.-|+.++.++ .+|+.++. +.+.|. |.|.+|-.++...+-.+..
T Consensus 80 ~~~l~d~~~~vr~~a~~aLg~~--~~~~a~~~----li~~l~~d~~~~vR~~aa~aL~~~~~ 135 (335)
T COG1413 80 RELLSDEDPRVRDAAADALGEL--GDPEAVPP----LVELLENDENEGVRAAAARALGKLGD 135 (335)
T ss_pred HHHhcCCCHHHHHHHHHHHHcc--CChhHHHH----HHHHHHcCCcHhHHHHHHHHHHhcCc
Confidence 3556666777777777654432 12233333 333333 6666666666665555433
No 148
>PF08082 PRO8NT: PRO8NT (NUC069), PrP8 N-terminal domain; InterPro: IPR012591 Pre-mRNA-processing-splicing factor 8 is a central component of the spliceosome, which may play a role in aligning the pre-mRNA 5'- and 3'-exons for ligation. It interacts with U5 snRNA, and with pre-mRNA 5'-splice sites in B spliceosomes and 3'-splice sites in C spliceosomes. It is part of the U5 snRNP complex, and of U5.4/6 and U5.U4atac/U6atac snRNP complexes in U2- and U12-dependent spliceosomes, respectively. It is also found in a mRNA splicing-dependent exon junction complex (EJC) with SRRM1 where it interacts with U5 snRNP proteins SNRP116 and WDR57/SPF38 [, ].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=60.48 E-value=5.9 Score=29.44 Aligned_cols=29 Identities=17% Similarity=0.406 Sum_probs=23.2
Q ss_pred hhHHH-HHHHhccCCChhHHHHHHHHhhhc
Q psy11028 73 SLAPV-FFKLMTTSSNNWMLIKIIKLFGAL 101 (136)
Q Consensus 73 ~lvp~-lv~iL~~v~~pWlqikiLk~L~~l 101 (136)
+.+|. +.++|.+.|-||-|+|-+++|-..
T Consensus 36 Ky~PhAv~kLLEnmPmPWE~~r~VkVlyHi 65 (152)
T PF08082_consen 36 KYMPHAVLKLLENMPMPWEQVREVKVLYHI 65 (152)
T ss_pred hhhhHHHHHHHHcCCcchhhheeeEEEEee
Confidence 45665 667899999999999999987543
No 149
>KOG2081|consensus
Probab=59.33 E-value=68 Score=28.73 Aligned_cols=98 Identities=13% Similarity=0.229 Sum_probs=60.0
Q ss_pred ChhhhhhcCC--CChHHHHHHHHHHHHHH---hHCCCCchhhHHHHHhhcCCCChhHHHHHHHH-HHHHHhcCCcchhhh
Q psy11028 1 MLGYFIYLTS--TKPYLRKKAVLMMYKVF---LKFPDALRPAFPRLKEKLEDPDSGVQSAAVNV-VCELARKNPKNYLSL 74 (136)
Q Consensus 1 ~~~V~klL~~--s~~~VRKKA~l~~~rl~---~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l-~~~l~~~~p~~~~~l 74 (136)
|++|.+++.+ ....+|..+++-+-++. .+.|+.++...+.+...+.++. +.++.++ +..++..=...-..+
T Consensus 428 ~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~---~as~~a~~~~~i~~~c~~~~~~l 504 (559)
T KOG2081|consen 428 MPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQLKR---LASAAALAFHRICSACRVQMTCL 504 (559)
T ss_pred HHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcc---hhHHHHHHHHHHHHHHHHHhhhh
Confidence 6788888843 33349999999887654 6899999998899999998876 3333322 222222111122245
Q ss_pred HHHHHHHhcc----CCChhHHHHHHHHhhhcC
Q psy11028 75 APVFFKLMTT----SSNNWMLIKIIKLFGALT 102 (136)
Q Consensus 75 vp~lv~iL~~----v~~pWlqikiLk~L~~l~ 102 (136)
+|.+..+... ..+|=-++ ++|-.+...
T Consensus 505 ~~~~~~l~~~l~~~~~~~e~a~-l~~~~s~i~ 535 (559)
T KOG2081|consen 505 IPSLLELIRSLDSTQINEEAAC-LLQGISLII 535 (559)
T ss_pred hHHHHHHHHHHHHHhccHHHHH-HHHHHHHHH
Confidence 6666665442 23466666 666665444
No 150
>KOG4524|consensus
Probab=59.26 E-value=37 Score=32.33 Aligned_cols=100 Identities=16% Similarity=0.187 Sum_probs=73.1
Q ss_pred hhhhcCCCChHHHHHHHHHHH---HHHhHCCCCch----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcc-----h
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMY---KVFLKFPDALR----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKN-----Y 71 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~---rl~~~~P~~v~----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~-----~ 71 (136)
..++|+|.+-.+|=||.-++. -+...+++.+- .+|+.+...+.++||.++.-+..++..+++...+. .
T Consensus 808 ~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~sR~l 887 (1014)
T KOG4524|consen 808 GIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVASRFL 887 (1014)
T ss_pred HHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 467889999999999998876 35566777543 37999999999999999999999999999887652 3
Q ss_pred hhhHHHHHHHhccC------------CCh-hHHHHHHHHhhhcCC
Q psy11028 72 LSLAPVFFKLMTTS------------SNN-WMLIKIIKLFGALTP 103 (136)
Q Consensus 72 ~~lvp~lv~iL~~v------------~~p-WlqikiLk~L~~l~~ 103 (136)
+.+.|.+-+.+.+. ++. =+|.|+++-+.-+.+
T Consensus 888 ~dvlP~l~~~~~~~~~~~~~~~~~~qta~yKlq~k~i~~~~~~v~ 932 (1014)
T KOG4524|consen 888 EDVLPWLKHLCQDSFARTILKELRIQTAEYKLQLKSISKLVKFVP 932 (1014)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCcce
Confidence 45677766555421 111 256677766655543
No 151
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=58.09 E-value=93 Score=25.06 Aligned_cols=84 Identities=17% Similarity=0.237 Sum_probs=62.5
Q ss_pred HHHHHHHHHhHCCCCchh-----hHHHHHhhcC-CCChhHHHHHHHHHHHHHhcCCcchhhh-----HHHHHHHhcc-CC
Q psy11028 19 AVLMMYKVFLKFPDALRP-----AFPRLKEKLE-DPDSGVQSAAVNVVCELARKNPKNYLSL-----APVFFKLMTT-SS 86 (136)
Q Consensus 19 A~l~~~rl~~~~P~~v~~-----~~~~l~~lL~-D~d~~V~~aal~l~~~l~~~~p~~~~~l-----vp~lv~iL~~-v~ 86 (136)
|.-.+.-++..+|+.=.- ..+-+.++|+ ...+.|..|++..+..+.-.+|..++.| ...++++++. ..
T Consensus 111 aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~~~~ 190 (257)
T PF08045_consen 111 ALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKSKST 190 (257)
T ss_pred HHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHccccc
Confidence 334445556677765432 5677888884 4689999999999999999999876655 7889999995 34
Q ss_pred ChhHHHHHHHHhhhcC
Q psy11028 87 NNWMLIKIIKLFGALT 102 (136)
Q Consensus 87 ~pWlqikiLk~L~~l~ 102 (136)
+.=+-.|++.+|-.|-
T Consensus 191 ~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 191 DRELRLKCIEFLYFYL 206 (257)
T ss_pred cHHHhHHHHHHHHHHH
Confidence 6667789999988553
No 152
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=57.37 E-value=53 Score=30.09 Aligned_cols=75 Identities=19% Similarity=0.192 Sum_probs=47.7
Q ss_pred HCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcC--CcchhhhHHHHHHHhcc--CCChhHHHHHHHHhhhcCC
Q psy11028 29 KFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN--PKNYLSLAPVFFKLMTT--SSNNWMLIKIIKLFGALTP 103 (136)
Q Consensus 29 ~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~--p~~~~~lvp~lv~iL~~--v~~pWlqikiLk~L~~l~~ 103 (136)
.+|+....+.+-+..-|.|+--+|-.-+.-.++.++.+| |+.+.+.+..+-..|+. +..-|--+++|.=|+.-.|
T Consensus 257 ~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P 335 (898)
T COG5240 257 ENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYP 335 (898)
T ss_pred hChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCC
Confidence 344444445566667777777899999999999999988 34444555555555553 3445555555555544434
No 153
>KOG3723|consensus
Probab=56.82 E-value=85 Score=28.69 Aligned_cols=106 Identities=11% Similarity=0.108 Sum_probs=70.3
Q ss_pred HHHHHHHhHCCCCchhhHH-------HHHhhcCCCChhHHHHHHH----H---HHHHHhcCCcchhhhHHHHHHHhccCC
Q psy11028 21 LMMYKVFLKFPDALRPAFP-------RLKEKLEDPDSGVQSAAVN----V---VCELARKNPKNYLSLAPVFFKLMTTSS 86 (136)
Q Consensus 21 l~~~rl~~~~P~~v~~~~~-------~l~~lL~D~d~~V~~aal~----l---~~~l~~~~p~~~~~lvp~lv~iL~~v~ 86 (136)
.+.+-+.+-+|++..+..+ ....+|.|....++.+-++ + +..+.+..|+...++.|.|.-.|.+ +
T Consensus 133 ~av~fL~rgn~el~rn~~~ylslaai~~adLL~~hTEv~~~siLSgn~~LLrvlS~Vye~~P~~i~PhlP~l~~lL~q-~ 211 (851)
T KOG3723|consen 133 IAVKFLHRGNKELCRNMSNYLSLAAITKADLLADHTEVIVKSILSGNTMLLRVLSAVYEKQPQPINPHLPELLALLSQ-L 211 (851)
T ss_pred hHHHHHhccChhhcccchhhhhHHHHhhhhhccCchHHHHHHHhccchHHHHHHHHHHhcCCCccCcccHHHHHHhcC-C
Confidence 4556666777777665332 3456677767777777766 4 4455667799899999999998876 4
Q ss_pred ChhHHHHHHHHhhhcC-CCChHHHhhhHHHHHHHHhccchhhh
Q psy11028 87 NNWMLIKIIKLFGALT-PLEPRLGKKLIEPLTNLIHRIISLSC 128 (136)
Q Consensus 87 ~pWlqikiLk~L~~l~-~~e~~~~~~l~e~l~~iL~~~~s~sv 128 (136)
+| .|--+|+++..|- ...++.-+++++.+.-.++.++-.+.
T Consensus 212 ~p-~~~~ll~~l~~LI~Qk~~evL~~ciP~L~g~l~ds~~~~i 253 (851)
T KOG3723|consen 212 EP-EQYHLLRLLHVLIKQKQLEVLQKCIPFLIGHLKDSTHNDI 253 (851)
T ss_pred CH-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccccchhH
Confidence 44 4555666666555 44477778888887777665554443
No 154
>KOG0946|consensus
Probab=55.92 E-value=49 Score=31.13 Aligned_cols=79 Identities=16% Similarity=0.280 Sum_probs=63.6
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHhHCCCCchh-------hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCc-----chh
Q psy11028 5 FIYLTSTKPYLRKKAVLMMYKVFLKFPDALRP-------AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK-----NYL 72 (136)
Q Consensus 5 ~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~-------~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~-----~~~ 72 (136)
...+.+-+-+||.-|+--+-.+...-|--+.+ .+.++..+|.|+.--+=..++-+++++.+.||. .|.
T Consensus 128 l~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFE 207 (970)
T KOG0946|consen 128 LQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFE 207 (970)
T ss_pred HHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHH
Confidence 34456788999999999999999888854432 588999999999988999999999999999986 355
Q ss_pred hhHHHHHHHhc
Q psy11028 73 SLAPVFFKLMT 83 (136)
Q Consensus 73 ~lvp~lv~iL~ 83 (136)
..--.+++|+.
T Consensus 208 NaFerLfsIIe 218 (970)
T KOG0946|consen 208 NAFERLFSIIE 218 (970)
T ss_pred HHHHHHHHHHH
Confidence 55566666666
No 155
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=55.78 E-value=30 Score=22.79 Aligned_cols=52 Identities=12% Similarity=0.231 Sum_probs=39.6
Q ss_pred CCCChHHHHHHHHHHHHHHhHCCCCchhhHHH----HHhhcCCCChhHHHHHHHHH
Q psy11028 9 TSTKPYLRKKAVLMMYKVFLKFPDALRPAFPR----LKEKLEDPDSGVQSAAVNVV 60 (136)
Q Consensus 9 ~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~----l~~lL~D~d~~V~~aal~l~ 60 (136)
+.++.-||..-.-|+..+.....+.+...|+. +...-.|.+.+++..|...+
T Consensus 28 ~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 28 NNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 45788999999999999999988888865544 44444677777777765543
No 156
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=55.50 E-value=1.4e+02 Score=25.86 Aligned_cols=80 Identities=18% Similarity=0.238 Sum_probs=56.9
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHhHCCCCchh-----hHHHHHhhcCCC-ChhHHHHHHHHHHHHHhcCC--cchh--hh
Q psy11028 5 FIYLTSTKPYLRKKAVLMMYKVFLKFPDALRP-----AFPRLKEKLEDP-DSGVQSAAVNVVCELARKNP--KNYL--SL 74 (136)
Q Consensus 5 ~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~-----~~~~l~~lL~D~-d~~V~~aal~l~~~l~~~~p--~~~~--~l 74 (136)
.++|++.+.+|.-+|+-.+.++....|+..+. +.+.+.+.|... +.+-.-.++..+.++.+..+ ..|. ..
T Consensus 107 l~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~ 186 (429)
T cd00256 107 FNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADG 186 (429)
T ss_pred HHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccC
Confidence 46788899999999999999999876665442 456777777643 35555555677888877654 2232 35
Q ss_pred HHHHHHHhcc
Q psy11028 75 APVFFKLMTT 84 (136)
Q Consensus 75 vp~lv~iL~~ 84 (136)
++.++++|+.
T Consensus 187 v~~L~~~L~~ 196 (429)
T cd00256 187 VPTLVKLLSN 196 (429)
T ss_pred HHHHHHHHhh
Confidence 8888888875
No 157
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=55.04 E-value=22 Score=26.18 Aligned_cols=41 Identities=20% Similarity=0.437 Sum_probs=34.4
Q ss_pred chhhhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHh
Q psy11028 70 NYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGK 110 (136)
Q Consensus 70 ~~~~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~ 110 (136)
.|.++.+.+.++|++-.++=+-...+|+++.+|.-||-..+
T Consensus 7 ~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k 47 (160)
T PF11865_consen 7 DYPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHK 47 (160)
T ss_pred HhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHh
Confidence 46688999999999876777788899999999999986555
No 158
>KOG2973|consensus
Probab=54.15 E-value=1.1e+02 Score=25.80 Aligned_cols=48 Identities=25% Similarity=0.243 Sum_probs=34.5
Q ss_pred hhhhhhcCCCChHHHHHHHHHHHHHHhHCCC-Cc----hhhHHHHHhhcCCCCh
Q psy11028 2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPD-AL----RPAFPRLKEKLEDPDS 50 (136)
Q Consensus 2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~-~v----~~~~~~l~~lL~D~d~ 50 (136)
.++.+++++.+|-|||-|+.-+.-+--- +- .. +..++.+.+++.|.++
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~ 58 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP 58 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc
Confidence 4788999999999999999666544322 11 11 1245678899999988
No 159
>PHA02855 anti-apoptotic membrane protein; Provisional
Probab=53.66 E-value=31 Score=26.25 Aligned_cols=45 Identities=18% Similarity=0.193 Sum_probs=30.6
Q ss_pred HHHHHhhc-CCCChhHHHHHHHHHHHHHhcCCc-----chhhhHHHHHHHh
Q psy11028 38 FPRLKEKL-EDPDSGVQSAAVNVVCELARKNPK-----NYLSLAPVFFKLM 82 (136)
Q Consensus 38 ~~~l~~lL-~D~d~~V~~aal~l~~~l~~~~p~-----~~~~lvp~lv~iL 82 (136)
...+...| .|..|||-.|+++++.-++++... .+..++..++...
T Consensus 78 K~~iie~L~~D~rPSVKLA~iSLlSiIiek~~~kn~~~v~s~lid~I~~ki 128 (180)
T PHA02855 78 KSQIIESLNNDNRPSVKLAIISLISMIAEKKGYKNNNIVMSDLINEIANKI 128 (180)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 33444444 899999999999999999886543 3344455555443
No 160
>KOG2933|consensus
Probab=53.53 E-value=1.3e+02 Score=25.14 Aligned_cols=128 Identities=14% Similarity=0.106 Sum_probs=84.9
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHhHCCCCchh----hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh-hhHHHHH
Q psy11028 5 FIYLTSTKPYLRKKAVLMMYKVFLKFPDALRP----AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL-SLAPVFF 79 (136)
Q Consensus 5 ~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~----~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~-~lvp~lv 79 (136)
.+.|++.+=..+=-+.--+.|+.+..||.+.+ .+-.+.+-+....-||.-+|+..+-++....-+... .+-+.+.
T Consensus 94 l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~ 173 (334)
T KOG2933|consen 94 LKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVT 173 (334)
T ss_pred HHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444334444555666788888888775 234456666788999999999999999775544333 3444444
Q ss_pred HHhc--cCCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccchhhhhhhccc
Q psy11028 80 KLMT--TSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLSCWTGIKP 134 (136)
Q Consensus 80 ~iL~--~v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~s~sv~~~~k~ 134 (136)
.+|. +..+-|+----.+.|..+... ..++++...+..++++.+...-.++.+.
T Consensus 174 ~Ll~ka~~dnrFvreda~kAL~aMV~~--vtp~~~L~~L~~~~~~~n~r~r~~a~~~ 228 (334)
T KOG2933|consen 174 QLLHKASQDNRFVREDAEKALVAMVNH--VTPQKLLRKLIPILQHSNPRVRAKAALC 228 (334)
T ss_pred HHHhhhcccchHHHHHHHHHHHHHHhc--cChHHHHHHHHHHHhhhchhhhhhhhcc
Confidence 4444 246778888888888776532 2256788888888988888776666554
No 161
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=53.22 E-value=42 Score=30.98 Aligned_cols=66 Identities=15% Similarity=0.291 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhHCC--CCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCc-----chhhhHHHHHHHhc
Q psy11028 18 KAVLMMYKVFLKFP--DALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK-----NYLSLAPVFFKLMT 83 (136)
Q Consensus 18 KA~l~~~rl~~~~P--~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~-----~~~~lvp~lv~iL~ 83 (136)
+|+-|++...+... .=+.+..+.+.-.|..++.-|+.+++.++-.|+...|+ .|-...-.++..|+
T Consensus 668 ~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lk 740 (975)
T COG5181 668 KAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLK 740 (975)
T ss_pred HHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHH
Confidence 56666666666541 11234567777888899999999999999999998886 45556666666666
No 162
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=52.26 E-value=16 Score=27.74 Aligned_cols=39 Identities=23% Similarity=0.339 Sum_probs=33.5
Q ss_pred CCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCC
Q psy11028 30 FPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNP 68 (136)
Q Consensus 30 ~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p 68 (136)
.++++..++..++..+.++|+.|-.++++++-.+....|
T Consensus 139 ~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 139 PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCC
Confidence 357778889999999999999999999999988877554
No 163
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=52.07 E-value=13 Score=25.75 Aligned_cols=24 Identities=17% Similarity=0.439 Sum_probs=21.2
Q ss_pred CCCChHHHHHHHHHHHHHHhHCCC
Q psy11028 9 TSTKPYLRKKAVLMMYKVFLKFPD 32 (136)
Q Consensus 9 ~~s~~~VRKKA~l~~~rl~~~~P~ 32 (136)
.+.+||+|-.|++|+.-+++-+|+
T Consensus 40 D~~nP~irEwai~aiRnL~e~n~e 63 (102)
T PF09759_consen 40 DDHNPFIREWAIFAIRNLCEGNPE 63 (102)
T ss_pred CcccHHHHHHHHHHHHHHHhCCHH
Confidence 578999999999999988888765
No 164
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=50.61 E-value=20 Score=32.74 Aligned_cols=60 Identities=8% Similarity=0.181 Sum_probs=43.4
Q ss_pred hhcCCCChHHHHHHHHHHHHHH-hHCCCCchh---hHHHHHhhcCCCChh-HHHHHHHHHHHHHh
Q psy11028 6 IYLTSTKPYLRKKAVLMMYKVF-LKFPDALRP---AFPRLKEKLEDPDSG-VQSAAVNVVCELAR 65 (136)
Q Consensus 6 klL~~s~~~VRKKA~l~~~rl~-~~~P~~v~~---~~~~l~~lL~D~d~~-V~~aal~l~~~l~~ 65 (136)
.|+.+++.+||+-|+.+..-+. +.+|++.+. ..+++.+.+.|++.+ ..--+..+.+.|..
T Consensus 628 ~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Khe~glaklGA~laqGi~~ 692 (926)
T COG5116 628 ALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKHESGLAKLGAVLAQGISE 692 (926)
T ss_pred HHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhh
Confidence 4668899999999999987665 678888764 578888888887554 33334445566654
No 165
>KOG0413|consensus
Probab=50.52 E-value=1e+02 Score=30.05 Aligned_cols=77 Identities=13% Similarity=0.260 Sum_probs=54.1
Q ss_pred hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCch---hhHHHHHhhcCCCChhHHHHHHHHHHHHHh-cCCcch-hhhHH
Q psy11028 2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR---PAFPRLKEKLEDPDSGVQSAAVNVVCELAR-KNPKNY-LSLAP 76 (136)
Q Consensus 2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~---~~~~~l~~lL~D~d~~V~~aal~l~~~l~~-~~p~~~-~~lvp 76 (136)
+-+.+.|.++.+.|||-+..-+.|+.+. +.+. ..+=++.-.|-|.++-+-.-|==++-++.+ ++|-.| ..|+-
T Consensus 1009 P~I~~~L~Dp~~iVRrqt~ilL~rLLq~--~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe 1086 (1529)
T KOG0413|consen 1009 PMIAASLCDPSVIVRRQTIILLARLLQF--GIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEPNFFPLNFVE 1086 (1529)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHhh--hhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCccchHHHHHH
Confidence 3467889999999999999999999998 4554 233344444558888888777767777765 677644 34554
Q ss_pred HHHH
Q psy11028 77 VFFK 80 (136)
Q Consensus 77 ~lv~ 80 (136)
.++.
T Consensus 1087 ~i~~ 1090 (1529)
T KOG0413|consen 1087 YIIA 1090 (1529)
T ss_pred HHHH
Confidence 4443
No 166
>KOG1248|consensus
Probab=50.46 E-value=1.8e+02 Score=28.53 Aligned_cols=127 Identities=9% Similarity=0.145 Sum_probs=79.5
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHhHCC----CCchhhHHHHHhhcCCCChhHHHHHHHHHHHHH--hcCC----cchhhh
Q psy11028 5 FIYLTSTKPYLRKKAVLMMYKVFLKFP----DALRPAFPRLKEKLEDPDSGVQSAAVNVVCELA--RKNP----KNYLSL 74 (136)
Q Consensus 5 ~klL~~s~~~VRKKA~l~~~rl~~~~P----~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~--~~~p----~~~~~l 74 (136)
.+-++++..+.|+.+.-|+.++|+..| +.++..++.+.=.+.|.|-+-=-.+..++.+++ +..- ++-..-
T Consensus 703 ~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~ 782 (1176)
T KOG1248|consen 703 LDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAI 782 (1176)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHH
Confidence 344577899999999999999999999 445444444444447777777778888888887 2211 111123
Q ss_pred HHHHHHHhc----c-----CCChhHHHHHHHHhhhcC-CCChHHHhhhHHHHHHHHhccchhhhhhhcc
Q psy11028 75 APVFFKLMT----T-----SSNNWMLIKIIKLFGALT-PLEPRLGKKLIEPLTNLIHRIISLSCWTGIK 133 (136)
Q Consensus 75 vp~lv~iL~----~-----v~~pWlqikiLk~L~~l~-~~e~~~~~~l~e~l~~iL~~~~s~sv~~~~k 133 (136)
+..++.++. | +.+- .+-+=.++.-+. -.+...-.++++.+.-.|+.++...+-.||+
T Consensus 783 lnefl~~Isagl~gd~~~~~as~--Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~ 849 (1176)
T KOG1248|consen 783 LNEFLSIISAGLVGDSTRVVASD--IVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIG 849 (1176)
T ss_pred HHHHHHHHHhhhcccHHHHHHHH--HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 444444444 2 1111 222333344444 2334456789999999999888877766664
No 167
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=50.20 E-value=31 Score=17.63 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCC
Q psy11028 14 YLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLED 47 (136)
Q Consensus 14 ~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D 47 (136)
.||+.|+.++-++ .+|+ ..+.|.+.|.|
T Consensus 2 ~vR~~aa~aLg~~--~~~~----a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQL--GDEE----AVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHc--CCHh----HHHHHHHHhcC
Confidence 6899999998876 3333 34456666655
No 168
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. AP180 and CALM play important roles in clathrin-mediated endocytosis. AP180 is a brain-specific clathrin-binding protein which stimulates clathrin assembly during the recycling of synaptic vesicles. The ANTH domain is structurally similar to the VHS domain and is composed of a superhelix of eight alpha helices. ANTH domains bind both inositol phospholipids and proteins, and contribute to the nucleation and formation of clathrin coats on membranes. ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that the ANTH domain is a universal component of the machine
Probab=49.65 E-value=71 Score=21.94 Aligned_cols=68 Identities=15% Similarity=0.073 Sum_probs=47.4
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY 71 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~ 71 (136)
|.+-.++.....+.|=+-.++......+..+..++..+.+.+.++|.-|+.=++.++..+.+.-...+
T Consensus 5 V~kAT~~~~~~pk~k~v~~ii~~t~~~~~~~~~~~~~l~~Rl~~~~w~v~~K~LillH~llr~G~~~~ 72 (117)
T cd03564 5 VKKATSHDEAPPKDKHVRKIIAGTSSSPASIPSFASALSRRLLDRNWVVVLKALILLHRLLREGHPSF 72 (117)
T ss_pred HHhhcCCCCCCCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCCHHH
Confidence 33444444444444444444444444467788899999999999999999999999999988765543
No 169
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=49.06 E-value=79 Score=21.38 Aligned_cols=60 Identities=12% Similarity=0.186 Sum_probs=43.0
Q ss_pred hhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhccCCChhHHHHHHHHhhhcCC
Q psy11028 43 EKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTP 103 (136)
Q Consensus 43 ~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~ 103 (136)
+.=++...|--...+.-++++...+++.+...+..+.+.|.. ++|..+.+-|.+|.++..
T Consensus 7 ~AT~~~~~~p~~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~-~~~~~~lkaL~lLe~lvk 66 (115)
T cd00197 7 KATSNENMGPDWPLIMEICDLINETNVGPKEAVDAIKKRINN-KNPHVVLKALTLLEYCVK 66 (115)
T ss_pred HHcCCCCCCCCHHHHHHHHHHHHCCCccHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHH
Confidence 333444444445556667777777777777788888888876 589999999999988864
No 170
>PF05536 Neurochondrin: Neurochondrin
Probab=48.97 E-value=1.9e+02 Score=25.59 Aligned_cols=85 Identities=15% Similarity=0.275 Sum_probs=55.8
Q ss_pred ChHHHHHHHHHHHHHHhHCCCCchh--h---HHHHHhhcCCCCh-hHHHHHHHHHHHHHhcCCcc---hh--hhHHHHHH
Q psy11028 12 KPYLRKKAVLMMYKVFLKFPDALRP--A---FPRLKEKLEDPDS-GVQSAAVNVVCELARKNPKN---YL--SLAPVFFK 80 (136)
Q Consensus 12 ~~~VRKKA~l~~~rl~~~~P~~v~~--~---~~~l~~lL~D~d~-~V~~aal~l~~~l~~~~p~~---~~--~lvp~lv~ 80 (136)
++..-+.-+++++.-|-.+|++..+ + +|.+.+.+...+. +++.=++.++..++ ..|+. +. .-+|.+.+
T Consensus 69 ~~~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~e 147 (543)
T PF05536_consen 69 PPEEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCE 147 (543)
T ss_pred CHHHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHH
Confidence 5667777777777777779998753 4 5666677766555 99999999999998 44442 22 34777777
Q ss_pred HhccCCChhHHHHHHHHhh
Q psy11028 81 LMTTSSNNWMLIKIIKLFG 99 (136)
Q Consensus 81 iL~~v~~pWlqikiLk~L~ 99 (136)
++.+ .|..+=..++++.
T Consensus 148 i~~~--~~~~~E~Al~lL~ 164 (543)
T PF05536_consen 148 IIPN--QSFQMEIALNLLL 164 (543)
T ss_pred HHHh--CcchHHHHHHHHH
Confidence 7765 3343434444333
No 171
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=48.94 E-value=1.3e+02 Score=25.05 Aligned_cols=106 Identities=12% Similarity=0.174 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHhHCCCCch----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhcc--CCCh
Q psy11028 15 LRKKAVLMMYKVFLKFPDALR----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTT--SSNN 88 (136)
Q Consensus 15 VRKKA~l~~~rl~~~~P~~v~----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~~--v~~p 88 (136)
|=-=+..++.|+..++|+..- .|++.+...+.+...-+-.+++.+..++...-+. -..+...+..++.. .+.-
T Consensus 150 i~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~-~~~~s~~~~~~~~~~~~~~~ 228 (372)
T PF12231_consen 150 IISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGP-NKELSKSVLEDLQRSLENGK 228 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhCh-hHHHHHHHHHHhcccccccc
Confidence 444567888999999998754 3788888888899999999888888888654331 11223333334432 1223
Q ss_pred hHHHHHHHHhhhcCC-CChHHHhhhHHHHHHHHh
Q psy11028 89 WMLIKIIKLFGALTP-LEPRLGKKLIEPLTNLIH 121 (136)
Q Consensus 89 WlqikiLk~L~~l~~-~e~~~~~~l~e~l~~iL~ 121 (136)
+.+...=++-..+.. ++...+-++-..+.-+|.
T Consensus 229 ~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~ 262 (372)
T PF12231_consen 229 LIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLG 262 (372)
T ss_pred HHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhC
Confidence 444444343334443 444455555555555554
No 172
>KOG2011|consensus
Probab=48.74 E-value=33 Score=32.91 Aligned_cols=57 Identities=19% Similarity=0.213 Sum_probs=40.3
Q ss_pred hcCCCChHHHHHHHHHHHHHHhHCCC--Cchh----hHHHHHhhc-CCCChhHHHHHHHHHHHH
Q psy11028 7 YLTSTKPYLRKKAVLMMYKVFLKFPD--ALRP----AFPRLKEKL-EDPDSGVQSAAVNVVCEL 63 (136)
Q Consensus 7 lL~~s~~~VRKKA~l~~~rl~~~~P~--~v~~----~~~~l~~lL-~D~d~~V~~aal~l~~~l 63 (136)
.|++.+.-||++.+-++.++|.++-+ .++. |-+|+.++. .|.+.||=..++.++...
T Consensus 334 tLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~ 397 (1048)
T KOG2011|consen 334 TLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLL 397 (1048)
T ss_pred eeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHH
Confidence 46889999999999999999999432 3444 556677776 355666666665555444
No 173
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=48.29 E-value=58 Score=29.86 Aligned_cols=55 Identities=22% Similarity=0.117 Sum_probs=43.7
Q ss_pred CCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcC
Q psy11028 9 TSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67 (136)
Q Consensus 9 ~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~ 67 (136)
++++.-||+-|+.|+==++..+|+++.. ..++|.|++---+-+++++...|+..+
T Consensus 562 sD~nDDVrRAAViAlGfvc~~D~~~lv~----tvelLs~shN~hVR~g~AvaLGiacag 616 (926)
T COG5116 562 SDGNDDVRRAAVIALGFVCCDDRDLLVG----TVELLSESHNFHVRAGVAVALGIACAG 616 (926)
T ss_pred ccCchHHHHHHHHheeeeEecCcchhhH----HHHHhhhccchhhhhhhHHHhhhhhcC
Confidence 6799999999999988888889888765 567788876666777777777776544
No 174
>KOG2274|consensus
Probab=47.16 E-value=69 Score=30.47 Aligned_cols=73 Identities=23% Similarity=0.379 Sum_probs=55.3
Q ss_pred CChHHHHHHHHHHHHHHhHC----------CCCch-h----hHHHHHhhcCCCChhHHHHHHHHHHHHHhc-CCcchhhh
Q psy11028 11 TKPYLRKKAVLMMYKVFLKF----------PDALR-P----AFPRLKEKLEDPDSGVQSAAVNVVCELARK-NPKNYLSL 74 (136)
Q Consensus 11 s~~~VRKKA~l~~~rl~~~~----------P~~v~-~----~~~~l~~lL~D~d~~V~~aal~l~~~l~~~-~p~~~~~l 74 (136)
..--.|+-|..-+.|.+.++ |..+. . ..+.+.+++.|++.-+-.|+.-.+..|+.. .|+.|.++
T Consensus 50 ~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpEl 129 (1005)
T KOG2274|consen 50 ASLPLRQIALVLLKRYIEKHWSPNFEAFRYPLIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPEL 129 (1005)
T ss_pred cCchHHHHHHHHHHHHHHHhCCChHhhccCCCcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhHHH
Confidence 44567888888888887754 44332 2 235677777788888888888888888774 59999999
Q ss_pred HHHHHHHhc
Q psy11028 75 APVFFKLMT 83 (136)
Q Consensus 75 vp~lv~iL~ 83 (136)
+|.+++.+.
T Consensus 130 v~~i~~~l~ 138 (1005)
T KOG2274|consen 130 VPFILKLLS 138 (1005)
T ss_pred HHHHHHHHh
Confidence 999999888
No 175
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=46.56 E-value=1.1e+02 Score=22.06 Aligned_cols=80 Identities=13% Similarity=0.154 Sum_probs=57.4
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCch------hhHHHHHhhcC-CCChhHHHHHHHHHHHHHhcCCc-chhhhH
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR------PAFPRLKEKLE-DPDSGVQSAAVNVVCELARKNPK-NYLSLA 75 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~------~~~~~l~~lL~-D~d~~V~~aal~l~~~l~~~~p~-~~~~lv 75 (136)
+.|.|++.+|.+--.|...+=-+.+.+...+. .|.+.+.+++. ..++.|..-.+.++.+-....+. .-.+.+
T Consensus 46 l~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i 125 (142)
T cd03569 46 LKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNKPQLKYV 125 (142)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCCcccHHH
Confidence 56778899999999997666655555544222 37888999887 46788888999999888775542 334567
Q ss_pred HHHHHHhc
Q psy11028 76 PVFFKLMT 83 (136)
Q Consensus 76 p~lv~iL~ 83 (136)
..+++.|+
T Consensus 126 ~~~y~~L~ 133 (142)
T cd03569 126 VDTYQILK 133 (142)
T ss_pred HHHHHHHH
Confidence 77777776
No 176
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=46.23 E-value=37 Score=24.94 Aligned_cols=15 Identities=20% Similarity=0.622 Sum_probs=8.3
Q ss_pred hhhhHHHHHHHhccC
Q psy11028 71 YLSLAPVFFKLMTTS 85 (136)
Q Consensus 71 ~~~lvp~lv~iL~~v 85 (136)
+.+.+|.+.+.+++.
T Consensus 126 L~~viP~~l~~i~~~ 140 (160)
T PF11865_consen 126 LPQVIPIFLRVIRTC 140 (160)
T ss_pred HHHHhHHHHHHHHhC
Confidence 344566666666553
No 177
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=45.81 E-value=83 Score=28.91 Aligned_cols=51 Identities=12% Similarity=0.281 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhcCCcchhhhHHHHHHHhccCCChhHHHHHHHHhhhcCCC
Q psy11028 54 SAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPL 104 (136)
Q Consensus 54 ~aal~l~~~l~~~~p~~~~~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~ 104 (136)
-+.+-++.++.+..|+.-....-.+......+-=|=+.++||.+|+.=+|.
T Consensus 431 ~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~ 481 (898)
T COG5240 431 KYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPR 481 (898)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCC
Confidence 344444444444444432222222333333333444555666666555553
No 178
>KOG2062|consensus
Probab=45.54 E-value=18 Score=33.67 Aligned_cols=54 Identities=15% Similarity=0.162 Sum_probs=39.6
Q ss_pred CCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhc
Q psy11028 9 TSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARK 66 (136)
Q Consensus 9 ~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~ 66 (136)
++.+.-||+.|+.++==++-++|+.+.. ..++|.++.-.-+-.+.+....|+..
T Consensus 565 sD~nDDVrRaAVialGFVl~~dp~~~~s----~V~lLses~N~HVRyGaA~ALGIaCA 618 (929)
T KOG2062|consen 565 SDVNDDVRRAAVIALGFVLFRDPEQLPS----TVSLLSESYNPHVRYGAAMALGIACA 618 (929)
T ss_pred cccchHHHHHHHHHheeeEecChhhchH----HHHHHhhhcChhhhhhHHHHHhhhhc
Confidence 5789999999999988888888888765 56777777555555555565566543
No 179
>KOG2259|consensus
Probab=45.46 E-value=59 Score=30.04 Aligned_cols=63 Identities=19% Similarity=0.162 Sum_probs=50.3
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCC
Q psy11028 5 FIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNP 68 (136)
Q Consensus 5 ~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p 68 (136)
..+.++.++.||+.|+-+++-+.. --.+-.....+..+.+.|.+-.|=.||+.++.-..+..|
T Consensus 204 ~~~~~~~D~~Vrt~A~eglL~L~e-g~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p 266 (823)
T KOG2259|consen 204 IYLEHDQDFRVRTHAVEGLLALSE-GFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCP 266 (823)
T ss_pred HHHhcCCCcchHHHHHHHHHhhcc-cccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCC
Confidence 345578889999999999887776 223333467889999999999999999999998888774
No 180
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=45.01 E-value=1.5e+02 Score=27.38 Aligned_cols=79 Identities=18% Similarity=0.235 Sum_probs=58.0
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCch----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhc--CCcchhhhHH
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR----PAFPRLKEKLEDPDSGVQSAAVNVVCELARK--NPKNYLSLAP 76 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~--~p~~~~~lvp 76 (136)
++.+-+.+.+..|||+.+--+.++....-++=+ ...+++.+.+-|+.+.|=.-|+-+++..-+. |++.+. +.
T Consensus 95 h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~--~n 172 (885)
T COG5218 95 HLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENRI--VN 172 (885)
T ss_pred HHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHHH--HH
Confidence 456677889999999999998888877655433 3679999999999999999999888887653 344332 33
Q ss_pred HHHHHhc
Q psy11028 77 VFFKLMT 83 (136)
Q Consensus 77 ~lv~iL~ 83 (136)
.+..++.
T Consensus 173 ~l~~~vq 179 (885)
T COG5218 173 LLKDIVQ 179 (885)
T ss_pred HHHHHHh
Confidence 4444444
No 181
>KOG4224|consensus
Probab=44.73 E-value=1.2e+02 Score=26.33 Aligned_cols=99 Identities=13% Similarity=0.155 Sum_probs=72.5
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCC----CCchh-hHHHHHhhcCCCChhHHHHHHHHHHHH--HhcCCcch--hhh
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFP----DALRP-AFPRLKEKLEDPDSGVQSAAVNVVCEL--ARKNPKNY--LSL 74 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P----~~v~~-~~~~l~~lL~D~d~~V~~aal~l~~~l--~~~~p~~~--~~l 74 (136)
...|+.++++-|+=-|.+|+--+- -+- +.++. .+|.+.++|.|+---.+.+.+..+-.| ..-|.... ..|
T Consensus 256 Lv~Lmd~~s~kvkcqA~lALrnla-sdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagf 334 (550)
T KOG4224|consen 256 LVDLMDDGSDKVKCQAGLALRNLA-SDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGF 334 (550)
T ss_pred HHHHHhCCChHHHHHHHHHHhhhc-ccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccc
Confidence 457889999999999999865442 222 34443 578999999888777888888888444 44444333 246
Q ss_pred HHHHHHHhccCCChhHHHHHHHHhhhcCC
Q psy11028 75 APVFFKLMTTSSNNWMLIKIIKLFGALTP 103 (136)
Q Consensus 75 vp~lv~iL~~v~~pWlqikiLk~L~~l~~ 103 (136)
.-+++++|..--++=.|..-...|+.|+.
T Consensus 335 l~pLVrlL~~~dnEeiqchAvstLrnLAa 363 (550)
T KOG4224|consen 335 LRPLVRLLRAGDNEEIQCHAVSTLRNLAA 363 (550)
T ss_pred hhHHHHHHhcCCchhhhhhHHHHHHHHhh
Confidence 78899999977777789888888888875
No 182
>PRK14015 pepN aminopeptidase N; Provisional
Probab=43.44 E-value=2.8e+02 Score=26.18 Aligned_cols=114 Identities=11% Similarity=0.115 Sum_probs=78.2
Q ss_pred hcCCCChHHHHHHHHHHHHHHhHCCCCchhh------------HHHHHhhcCC-----CChhHHHHHHHHHHHHHhcCCc
Q psy11028 7 YLTSTKPYLRKKAVLMMYKVFLKFPDALRPA------------FPRLKEKLED-----PDSGVQSAAVNVVCELARKNPK 69 (136)
Q Consensus 7 lL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~------------~~~l~~lL~D-----~d~~V~~aal~l~~~l~~~~p~ 69 (136)
.|.+.+.--|..|.-.++.-++.+|-.++.| .+++++++.+ +||.-+-|.+..+ +..||.
T Consensus 723 ~l~~~~~~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~~~~~~~~v~~l~~hp~f~~~npn~~ral~~~f---~~~n~~ 799 (875)
T PRK14015 723 ALVNADLPERDEALADFYDRWKDDPLVMDKWFALQATSPAPDTLERVRALMQHPAFDLKNPNRVRSLIGAF---AAANPA 799 (875)
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCchhhHHHHHHHhCCCCcCHHHHHHHHhcCCCCCCCCCcHHHHHHHHH---hhcCCc
Confidence 4444444588899999999999999777653 5667777765 3666666655544 344554
Q ss_pred chh-------hhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccc
Q psy11028 70 NYL-------SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRII 124 (136)
Q Consensus 70 ~~~-------~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~ 124 (136)
.|- .++-..+--|-. -||=.--++++.|......|+.-.......+..|+...+
T Consensus 800 ~fh~~~g~gy~~~~~~i~~ld~-~Np~~aarl~~~~~~~~~~~~~r~~~~~~~l~~i~~~~~ 860 (875)
T PRK14015 800 GFHAADGSGYRFLADQILALDK-INPQVAARLATPLIRWRRYDPKRQALMRAALERIAALPN 860 (875)
T ss_pred ccCCCCCcHHHHHHHHHHHhcC-cCHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHHHhCcC
Confidence 331 233333333333 599999999999999999998888888888888887744
No 183
>KOG1077|consensus
Probab=42.84 E-value=1.2e+02 Score=28.41 Aligned_cols=120 Identities=13% Similarity=0.134 Sum_probs=76.1
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHh
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM 82 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL 82 (136)
|-.+||+++.=.-|+-..+.+.-++..+.|+....+..+++=|..+|+.-+.-|++.+--+..++ ....+.+.+.++|
T Consensus 78 EaV~LLss~kysEKqIGYl~is~L~n~n~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re--~~ea~~~DI~KlL 155 (938)
T KOG1077|consen 78 EAVNLLSSNKYSEKQIGYLFISLLLNENSDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSRE--MAEAFADDIPKLL 155 (938)
T ss_pred HHHHHhhcCCccHHHHhHHHHHHHHhcchHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHh--HHHHhhhhhHHHH
Confidence 34567777777777777888888888887777777777888888889988888888876665433 2345666777777
Q ss_pred cc-CCChhH-HHHHHHHhhhcCC-CChHHHhhhHHHHHHHHhccc
Q psy11028 83 TT-SSNNWM-LIKIIKLFGALTP-LEPRLGKKLIEPLTNLIHRII 124 (136)
Q Consensus 83 ~~-v~~pWl-qikiLk~L~~l~~-~e~~~~~~l~e~l~~iL~~~~ 124 (136)
.. .+.+++ |=.-|-+|+.|.. +|---...-.+++..+|+...
T Consensus 156 vS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~ 200 (938)
T KOG1077|consen 156 VSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQH 200 (938)
T ss_pred hCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccc
Confidence 74 233333 2223333433332 221112356777777887665
No 184
>KOG4653|consensus
Probab=42.63 E-value=66 Score=30.51 Aligned_cols=67 Identities=18% Similarity=0.168 Sum_probs=53.5
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhH-CCC-Cch--hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCc
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLK-FPD-ALR--PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK 69 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~-~P~-~v~--~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~ 69 (136)
++...+.+.-+.+|=-|...+.|++++ ++. .+. ..+....+.|.|.|+=|-.+++..+..+|+..|+
T Consensus 731 eai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e 801 (982)
T KOG4653|consen 731 EAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE 801 (982)
T ss_pred HHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch
Confidence 345567788899999999999999984 232 222 3678899999999999999999988888887775
No 185
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=42.10 E-value=1.1e+02 Score=20.85 Aligned_cols=73 Identities=11% Similarity=0.113 Sum_probs=49.7
Q ss_pred CCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCC--CChhHHHHHHHHHHHHHhc-CCcchhhhHHHHHHHh
Q psy11028 10 STKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLED--PDSGVQSAAVNVVCELARK-NPKNYLSLAPVFFKLM 82 (136)
Q Consensus 10 ~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D--~d~~V~~aal~l~~~l~~~-~p~~~~~lvp~lv~iL 82 (136)
+....-||+|.-++-.+++...+.+..+.+++...|.. +.+++-..++.+-..+.+. +++....+++..+..+
T Consensus 26 ~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l 101 (107)
T PF08064_consen 26 KKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIPELREEALSCWNCFIKTLDEEDLGPLLDQIFAIL 101 (107)
T ss_pred CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 46667788888888999998888888887776666642 3336666677777666663 4455556666555433
No 186
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=41.76 E-value=16 Score=27.24 Aligned_cols=36 Identities=17% Similarity=0.156 Sum_probs=29.4
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHH
Q psy11028 5 FIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPR 40 (136)
Q Consensus 5 ~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~ 40 (136)
..++++...||||-..-++.-+..++|+.+..|+..
T Consensus 161 ~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l~~ 196 (213)
T PF08713_consen 161 EALLKDEEYYVQKAIGWALREIGKKDPDEVLEFLQK 196 (213)
T ss_dssp HHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred HHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 456788999999999999999999999999987755
No 187
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=41.46 E-value=2.4e+02 Score=24.46 Aligned_cols=85 Identities=8% Similarity=0.140 Sum_probs=55.1
Q ss_pred HHHHHhhcC-CCChhHHHHHHHHHHHHHhcCCcc---hhhh-------HHHHHHHhccCCChhHHHHHHHHhhhcCCCC-
Q psy11028 38 FPRLKEKLE-DPDSGVQSAAVNVVCELARKNPKN---YLSL-------APVFFKLMTTSSNNWMLIKIIKLFGALTPLE- 105 (136)
Q Consensus 38 ~~~l~~lL~-D~d~~V~~aal~l~~~l~~~~p~~---~~~l-------vp~lv~iL~~v~~pWlqikiLk~L~~l~~~e- 105 (136)
..-+..+|. .++..++-.+++++.|+...+|+. |.+. ..+++++|.+ .+.|.+.+..++++.+....
T Consensus 55 ~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~-~d~~i~~~a~~iLt~l~~~~~ 133 (429)
T cd00256 55 VKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNR-QDQFIVHMSFSILAKLACFGL 133 (429)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcC-CchhHHHHHHHHHHHHHhcCc
Confidence 333444554 467888999999999999988853 2221 3445566655 79999999999999885321
Q ss_pred ----hHHHhhhHHHHHHHHhcc
Q psy11028 106 ----PRLGKKLIEPLTNLIHRI 123 (136)
Q Consensus 106 ----~~~~~~l~e~l~~iL~~~ 123 (136)
......+.+-+.+.+++.
T Consensus 134 ~~~~~~~l~~~~~~l~~~l~~~ 155 (429)
T cd00256 134 AKMEGSDLDYYFNWLKEQLNNI 155 (429)
T ss_pred cccchhHHHHHHHHHHHHhhcc
Confidence 122233555666666543
No 188
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=41.39 E-value=1.3e+02 Score=21.35 Aligned_cols=80 Identities=14% Similarity=0.135 Sum_probs=54.8
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCch------hhHHHHHhhcCCCChh----HHHHHHHHHHHHHhcCCc-chh
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR------PAFPRLKEKLEDPDSG----VQSAAVNVVCELARKNPK-NYL 72 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~------~~~~~l~~lL~D~d~~----V~~aal~l~~~l~~~~p~-~~~ 72 (136)
+.+-|.|++|.+.-.|...+=-+.+...+.+. .|.+.+.+++.++..+ |---++.++.+-....+. .-.
T Consensus 47 l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~~~~~~ 126 (140)
T PF00790_consen 47 LRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAFKSDPEL 126 (140)
T ss_dssp HHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTTTSTTG
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHCCCCCc
Confidence 56778899999999998777777777644332 3788899988765444 667777777777765532 233
Q ss_pred hhHHHHHHHhc
Q psy11028 73 SLAPVFFKLMT 83 (136)
Q Consensus 73 ~lvp~lv~iL~ 83 (136)
..+-.+++.|+
T Consensus 127 ~~i~~~y~~Lk 137 (140)
T PF00790_consen 127 SLIQDTYKRLK 137 (140)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 45566666554
No 189
>KOG2025|consensus
Probab=41.19 E-value=1.8e+02 Score=27.36 Aligned_cols=81 Identities=12% Similarity=0.087 Sum_probs=55.8
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCchh----hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHH
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRP----AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFF 79 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~----~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv 79 (136)
+.+-..+.+..||++.+.-+.++..-..+.=++ ..+++...|.|+.|.|=.-|+-+++.+-...-+.-.+.+..+.
T Consensus 90 lLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~v~n~l~ 169 (892)
T KOG2025|consen 90 LLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEECPVVNLLK 169 (892)
T ss_pred HHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcccHHHHHH
Confidence 455567788999999999999998744333332 4678888889999999988887777765422222233455555
Q ss_pred HHhcc
Q psy11028 80 KLMTT 84 (136)
Q Consensus 80 ~iL~~ 84 (136)
.++.+
T Consensus 170 ~liqn 174 (892)
T KOG2025|consen 170 DLIQN 174 (892)
T ss_pred HHHhc
Confidence 55554
No 190
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=40.71 E-value=82 Score=24.62 Aligned_cols=45 Identities=22% Similarity=0.462 Sum_probs=32.5
Q ss_pred HHHHHhhcCCC--ChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHh
Q psy11028 38 FPRLKEKLEDP--DSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM 82 (136)
Q Consensus 38 ~~~l~~lL~D~--d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL 82 (136)
++.+.+.|.+. ++.++++.++.+..|++..|..+...++.+.+.=
T Consensus 116 L~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~~~~~Il~~ll~~~ 162 (239)
T PF11935_consen 116 LDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQFMSRILPALLSFN 162 (239)
T ss_dssp HHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 45555666544 6999999999999999999987666666655543
No 191
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=40.60 E-value=58 Score=26.61 Aligned_cols=50 Identities=26% Similarity=0.383 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHh-HCCC--C-chhhHHHHHh-hcCC--------CChhHHHHHHHHHHHHHhc
Q psy11028 17 KKAVLMMYKVFL-KFPD--A-LRPAFPRLKE-KLED--------PDSGVQSAAVNVVCELARK 66 (136)
Q Consensus 17 KKA~l~~~rl~~-~~P~--~-v~~~~~~l~~-lL~D--------~d~~V~~aal~l~~~l~~~ 66 (136)
||-++.++..|- +.++ . .+.+++.+.+ .|.| ++|.|+....+++..+...
T Consensus 44 KkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~ 106 (319)
T PF08767_consen 44 KKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGEL 106 (319)
T ss_dssp HHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHh
Confidence 566666655443 3332 2 2235554433 4433 6888877777776666553
No 192
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=40.51 E-value=1.3e+02 Score=21.23 Aligned_cols=80 Identities=13% Similarity=0.086 Sum_probs=53.4
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCch------hhHHHHHhhcCCCC--hhHHHHHHHHHHHHHhcCC-cchhhh
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR------PAFPRLKEKLEDPD--SGVQSAAVNVVCELARKNP-KNYLSL 74 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~------~~~~~l~~lL~D~d--~~V~~aal~l~~~l~~~~p-~~~~~l 74 (136)
+.+.|++++|.+--.|...+=-+.+.+.+-+. .|.+.+.+++.++. +.|-.-.+.++.+-..... ++-.+.
T Consensus 42 l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~~~~~~~ 121 (133)
T smart00288 42 LKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKNDPDLSQ 121 (133)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCCCCchH
Confidence 45677889999999997776666666554332 37888999888753 3477888888777766442 222345
Q ss_pred HHHHHHHhc
Q psy11028 75 APVFFKLMT 83 (136)
Q Consensus 75 vp~lv~iL~ 83 (136)
+...++.|+
T Consensus 122 i~~~y~~L~ 130 (133)
T smart00288 122 IVDVYDLLK 130 (133)
T ss_pred HHHHHHHHH
Confidence 566666554
No 193
>PF03914 CBF: CBF/Mak21 family; InterPro: IPR005612 This domain is present in the CAATT-binding protein which is essential for growth and necessary for 60S ribosomal subunit biogenesis. Other proteins containing this domain stimulate transcription from the HSP70 promoter.
Probab=40.31 E-value=78 Score=22.97 Aligned_cols=50 Identities=12% Similarity=0.123 Sum_probs=38.9
Q ss_pred HHHHHHHHHhHCC---CCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCC
Q psy11028 19 AVLMMYKVFLKFP---DALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNP 68 (136)
Q Consensus 19 A~l~~~rl~~~~P---~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p 68 (136)
...|+.++++... +.+..|+.|+.+.-.-.+++...+.+.++..+.+.+|
T Consensus 46 ~l~lL~~~l~~~~~~~~rvaAFiKRLl~~sl~~~~~~~~~~L~~i~~ll~~~p 98 (164)
T PF03914_consen 46 LLNLLDKSLKSDHLPIQRVAAFIKRLLQLSLHLPPSFALAILALIRKLLKRHP 98 (164)
T ss_pred HHHHHHHHHcccCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCH
Confidence 5677777774332 2233588888888888899999999999999999987
No 194
>KOG2062|consensus
Probab=40.25 E-value=46 Score=31.12 Aligned_cols=49 Identities=8% Similarity=0.113 Sum_probs=38.5
Q ss_pred hhcCCCChHHHHHHHHHHHHHH-hHCCCCch---hhHHHHHhhcCCCChhHHH
Q psy11028 6 IYLTSTKPYLRKKAVLMMYKVF-LKFPDALR---PAFPRLKEKLEDPDSGVQS 54 (136)
Q Consensus 6 klL~~s~~~VRKKA~l~~~rl~-~~~P~~v~---~~~~~l~~lL~D~d~~V~~ 54 (136)
.+.++...+|||-|++++.-+. |..+++.+ .|.+.+.+.+.|++..++.
T Consensus 631 pl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd~~a 683 (929)
T KOG2062|consen 631 PLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHEDGMA 683 (929)
T ss_pred hhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhHHHH
Confidence 4567899999999999987655 66676665 3778899999998777664
No 195
>KOG1048|consensus
Probab=40.04 E-value=1.1e+02 Score=28.42 Aligned_cols=87 Identities=14% Similarity=0.056 Sum_probs=61.2
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHCC---CCch-hhHHHHHhhcCCCCh------hHHHHHHHHHHHHHhcCCcchh
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFP---DALR-PAFPRLKEKLEDPDS------GVQSAAVNVVCELARKNPKNYL 72 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P---~~v~-~~~~~l~~lL~D~d~------~V~~aal~l~~~l~~~~p~~~~ 72 (136)
-+.+||...++.|-+-|+-++.-+-+ ++ +++. ..++.+.+.|-+..+ -++.+++..+.++..+|+..=+
T Consensus 570 ~l~~ll~~~~~~vv~s~a~~LrNls~-d~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAk 648 (717)
T KOG1048|consen 570 PLVELLRNDDSDVVRSAAGALRNLSR-DIRNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAK 648 (717)
T ss_pred HHHHHHhcCCchHHHHHHHHHhhhcc-CchhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHH
Confidence 35678888888888888877665543 22 2232 356778888866544 6888999999999998886444
Q ss_pred h-----hHHHHHHHhccCCChhH
Q psy11028 73 S-----LAPVFFKLMTTSSNNWM 90 (136)
Q Consensus 73 ~-----lvp~lv~iL~~v~~pWl 90 (136)
+ =+++++.|.++.-+||.
T Consensus 649 dl~~~~g~~kL~~I~~s~~S~k~ 671 (717)
T KOG1048|consen 649 DLLEIKGIPKLRLISKSQHSPKE 671 (717)
T ss_pred HHHhccChHHHHHHhcccCCHHH
Confidence 3 38888888887555554
No 196
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=39.92 E-value=33 Score=27.89 Aligned_cols=40 Identities=23% Similarity=0.260 Sum_probs=30.4
Q ss_pred hhcCCC--ChHHHHHHHHHHHHHHhHCCCCch-hhHHHHHhhc
Q psy11028 6 IYLTST--KPYLRKKAVLMMYKVFLKFPDALR-PAFPRLKEKL 45 (136)
Q Consensus 6 klL~~s--~~~VRKKA~l~~~rl~~~~P~~v~-~~~~~l~~lL 45 (136)
-++.|+ .+-|||.|.-++-++|..+|+.+. .+++.+.+.|
T Consensus 211 ~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~l~~~li~~l~~~l 253 (339)
T PF12074_consen 211 YLLCSSNVSWKVRRAALSALKKLYASNPELLSKSLISGLWKWL 253 (339)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 345566 899999999999999999999544 3555555555
No 197
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=39.15 E-value=1.4e+02 Score=21.29 Aligned_cols=72 Identities=13% Similarity=0.245 Sum_probs=44.9
Q ss_pred hHHHHHhhcC-CCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHhhhHHH
Q psy11028 37 AFPRLKEKLE-DPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEP 115 (136)
Q Consensus 37 ~~~~l~~lL~-D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~ 115 (136)
.+..|.++|+ ..|+.+++-|++=+-++++..|..- .++ .-+.. - .++++.+...|++...+-+-+
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr-~ii----~~lg~------K---~~vM~Lm~h~d~eVr~eAL~a 109 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGR-NII----EKLGA------K---ERVMELMNHEDPEVRYEALLA 109 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGH-HHH----HHHSH------H---HHHHHHTS-SSHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHH-HHH----HhcCh------H---HHHHHHhcCCCHHHHHHHHHH
Confidence 4677888884 4588888888888888888887631 121 22221 1 234455666778888777777
Q ss_pred HHHHHhc
Q psy11028 116 LTNLIHR 122 (136)
Q Consensus 116 l~~iL~~ 122 (136)
++.++.+
T Consensus 110 vQklm~~ 116 (119)
T PF11698_consen 110 VQKLMVN 116 (119)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7777654
No 198
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=38.71 E-value=1.5e+02 Score=21.34 Aligned_cols=69 Identities=14% Similarity=0.206 Sum_probs=51.4
Q ss_pred chhhHHHHHhhcC-CCChhHHHHHHHHHHHHHhcCCcchh------hhHHH-HHHHhccC--CChhHHHHHHHHhhhcC
Q psy11028 34 LRPAFPRLKEKLE-DPDSGVQSAAVNVVCELARKNPKNYL------SLAPV-FFKLMTTS--SNNWMLIKIIKLFGALT 102 (136)
Q Consensus 34 v~~~~~~l~~lL~-D~d~~V~~aal~l~~~l~~~~p~~~~------~lvp~-lv~iL~~v--~~pWlqikiLk~L~~l~ 102 (136)
..+.+..+++.|. .+|+-|..-|+.++..+.++=...|. .|... +++++..- +.+=.+-|+|.+++..+
T Consensus 36 ~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 36 PKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWA 114 (141)
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHH
Confidence 3456778888887 47999999999999888887766553 67776 88888632 23357888998888665
No 199
>cd00871 PI4Ka Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle.
Probab=38.21 E-value=1.1e+02 Score=23.23 Aligned_cols=84 Identities=13% Similarity=0.074 Sum_probs=51.7
Q ss_pred HHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCc--------chh---hhHHHHHHHhccCCChhH
Q psy11028 22 MMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK--------NYL---SLAPVFFKLMTTSSNNWM 90 (136)
Q Consensus 22 ~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~--------~~~---~lvp~lv~iL~~v~~pWl 90 (136)
-..+++.++|..+.+.-+.+..++...+.+-....+..+..-..-+|. .|. ......++.|++.++.=+
T Consensus 24 e~~~Lv~~~p~~~~~~p~AL~~~l~~~~~~~~~~~l~~Ll~W~pi~p~~ALell~~~y~~~~~Vr~yAvr~L~~~~~e~l 103 (175)
T cd00871 24 EVTRLVRKHPLAVVKIPEALPFLVTGKSVDENSPDLKYLLYWAPVSPVQALSLFTPQYPGHPLVLQYAVRVLESYPVETV 103 (175)
T ss_pred HHHHHHHHCHHHHhcCHHHHHHHhCccChhhHHHHHHHHcCCCCCCHHHHHHHhCcccCCCHHHHHHHHHHHHhCCHHHH
Confidence 445677777777666666666667666665554444444322222221 122 234456778888888888
Q ss_pred HHHHHHHhhhcCCCC
Q psy11028 91 LIKIIKLFGALTPLE 105 (136)
Q Consensus 91 qikiLk~L~~l~~~e 105 (136)
.-.++++.+.|.-+.
T Consensus 104 ~~YlpQLVQaLryd~ 118 (175)
T cd00871 104 FFYIPQIVQALRYDK 118 (175)
T ss_pred HHHHHHHHHHHhccc
Confidence 888888888887653
No 200
>KOG1241|consensus
Probab=37.68 E-value=55 Score=30.54 Aligned_cols=64 Identities=17% Similarity=0.241 Sum_probs=49.2
Q ss_pred ChhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchh------hHHHHHhhcCCCChhHHHHHHHHHHHHHh
Q psy11028 1 MLGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRP------AFPRLKEKLEDPDSGVQSAAVNVVCELAR 65 (136)
Q Consensus 1 ~~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~------~~~~l~~lL~D~d~~V~~aal~l~~~l~~ 65 (136)
++.+.+++.++.-.||.+|+=++.|++...|+...+ ...-+.+.|.| .|-|.+++.-.+..+++
T Consensus 408 lp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Lae 477 (859)
T KOG1241|consen 408 LPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAE 477 (859)
T ss_pred hHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHH
Confidence 356778899999999999999999999999987653 23344444444 68888888877777764
No 201
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=35.49 E-value=2.9e+02 Score=23.72 Aligned_cols=91 Identities=13% Similarity=0.184 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHhHCC-CCchhhHHHHHhhcCCCCh-hHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhccCCCh---
Q psy11028 14 YLRKKAVLMMYKVFLKFP-DALRPAFPRLKEKLEDPDS-GVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNN--- 88 (136)
Q Consensus 14 ~VRKKA~l~~~rl~~~~P-~~v~~~~~~l~~lL~D~d~-~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~~v~~p--- 88 (136)
.-|=+|+--+.+..+.+| +.++..|...+++++.+.| .+=.+++.++.++++.+-..-...--.+++.+..-..|
T Consensus 5 ~~R~~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~~d~ 84 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSNDDDF 84 (464)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCchhH
Confidence 356677888888887776 5677789999999987644 48899999999999977543333445566655543233
Q ss_pred hHHHHHHHHhhhcCCC
Q psy11028 89 WMLIKIIKLFGALTPL 104 (136)
Q Consensus 89 WlqikiLk~L~~l~~~ 104 (136)
-+|++.|+.|..=|.+
T Consensus 85 ~~~l~aL~~LT~~Grd 100 (464)
T PF11864_consen 85 DLRLEALIALTDNGRD 100 (464)
T ss_pred HHHHHHHHHHHcCCcC
Confidence 4777777777655543
No 202
>KOG2434|consensus
Probab=35.40 E-value=1.1e+02 Score=27.05 Aligned_cols=38 Identities=18% Similarity=0.169 Sum_probs=33.3
Q ss_pred cCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHh
Q psy11028 45 LEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM 82 (136)
Q Consensus 45 L~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL 82 (136)
+.+..++|+.+.+++++.++...+..+.+++..++..+
T Consensus 83 ~~~~~~sv~~~~~~~l~~l~~~~~~~l~~c~~~lv~~~ 120 (500)
T KOG2434|consen 83 LRSHRGSVIEALLNLLISLAVTSGKFLSPCLSMLVSNL 120 (500)
T ss_pred hhcCCchHHHHHHHHHHHHHHhCCchHHHHHHHHHHhC
Confidence 45889999999999999999999988888887777766
No 203
>KOG1517|consensus
Probab=35.36 E-value=1.3e+02 Score=29.44 Aligned_cols=61 Identities=25% Similarity=0.325 Sum_probs=51.4
Q ss_pred hhcCCC-ChHHHHHHHHHHHHHHhHCCCC----chh-hHHHHHhhcCCCChhHHHHHHHHHHHHHhc
Q psy11028 6 IYLTST-KPYLRKKAVLMMYKVFLKFPDA----LRP-AFPRLKEKLEDPDSGVQSAAVNVVCELARK 66 (136)
Q Consensus 6 klL~~s-~~~VRKKA~l~~~rl~~~~P~~----v~~-~~~~l~~lL~D~d~~V~~aal~l~~~l~~~ 66 (136)
..|+++ .|..|+-.++|+=|+.+-+++. .++ ..+++..+|.|+-|-|=+||+-.+-.+...
T Consensus 606 e~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 606 EHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred HHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcc
Confidence 345664 7999999999999999999874 233 579999999999999999999888877765
No 204
>PF14750 INTS2: Integrator complex subunit 2
Probab=35.15 E-value=2.2e+02 Score=27.57 Aligned_cols=113 Identities=18% Similarity=0.215 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHhHCCCCchh-----------------------hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCC--
Q psy11028 14 YLRKKAVLMMYKVFLKFPDALRP-----------------------AFPRLKEKLEDPDSGVQSAAVNVVCELARKNP-- 68 (136)
Q Consensus 14 ~VRKKA~l~~~rl~~~~P~~v~~-----------------------~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p-- 68 (136)
-||+-+|.-+|++|--+|.++.- ..+.+.++|...|+.-..=|+.+..+++.++|
T Consensus 903 ei~~~iC~~iHq~FI~~p~L~klvhfQgyp~~llp~~V~~IPSmHicldfi~Ell~~~~~~kqvFaI~L~s~L~~~Y~l~ 982 (1049)
T PF14750_consen 903 EIQCLICSFIHQMFIADPNLAKLVHFQGYPSELLPMLVEGIPSMHICLDFIPELLAQPDLEKQVFAIQLASHLCHKYPLP 982 (1049)
T ss_pred HHHHHHHHHHHHHHhcChhHHHHHHhcCCCHHHhHHHHccCcHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhhcCcH
Confidence 47778888888888777654331 25778899999999999999999999999987
Q ss_pred cch---hhhHHHHHHHhccCCCh---hHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccchh
Q psy11028 69 KNY---LSLAPVFFKLMTTSSNN---WMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISL 126 (136)
Q Consensus 69 ~~~---~~lvp~lv~iL~~v~~p---WlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~s~ 126 (136)
+.+ +-.+..+..+++..+.+ =+--.++-.|..++..=|.+++.+...+.++=+-..|.
T Consensus 983 ~sl~~a~~~~~~~~~ll~~l~~~~~~~~~~~~lP~l~~~~~aFP~L~~~i~~lL~~~~~~~~s~ 1046 (1049)
T PF14750_consen 983 KSLSVARLALNVLSTLLSVLSSDSRSKFLKPVLPALVRICEAFPPLADDIVRLLMQVGRVCASR 1046 (1049)
T ss_pred HHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHhHHHHHHHHHCCChHHHHHHHHHHHHHHHhhh
Confidence 221 22233333344432222 12244455555555443545666666666655554443
No 205
>KOG2021|consensus
Probab=34.98 E-value=20 Score=33.48 Aligned_cols=40 Identities=13% Similarity=0.192 Sum_probs=28.5
Q ss_pred hhcCCCChHHHHHHHHHHHHHHhHCCCCc----hhhHHHHHhhc
Q psy11028 6 IYLTSTKPYLRKKAVLMMYKVFLKFPDAL----RPAFPRLKEKL 45 (136)
Q Consensus 6 klL~~s~~~VRKKA~l~~~rl~~~~P~~v----~~~~~~l~~lL 45 (136)
+-|.|++.+||.+|.--++|+.+.--..+ ++...++.++|
T Consensus 542 rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL 585 (980)
T KOG2021|consen 542 RGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLL 585 (980)
T ss_pred hhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999987633323 33345555555
No 206
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=34.88 E-value=1.4e+02 Score=22.38 Aligned_cols=58 Identities=14% Similarity=0.281 Sum_probs=45.3
Q ss_pred ChHHHHHHHHHHHHHHhHCCCCch---h--hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCc
Q psy11028 12 KPYLRKKAVLMMYKVFLKFPDALR---P--AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK 69 (136)
Q Consensus 12 ~~~VRKKA~l~~~rl~~~~P~~v~---~--~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~ 69 (136)
++.|-+.|..-+-.+...+|..-. . -++.+...|.+.|+.+...+++++..+..+-|+
T Consensus 73 d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 73 DASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred cchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence 566777776666777777776332 2 478899999999999999999999999877664
No 207
>KOG2956|consensus
Probab=34.58 E-value=35 Score=30.09 Aligned_cols=30 Identities=20% Similarity=0.143 Sum_probs=24.6
Q ss_pred hhhhhhcCCCChHHHHHHHHHHHHHHhHCC
Q psy11028 2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFP 31 (136)
Q Consensus 2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P 31 (136)
+-|.+-.+++...|||.|+.|+.-+|...-
T Consensus 451 P~~iqay~S~SS~VRKtaVfCLVamv~~vG 480 (516)
T KOG2956|consen 451 PCVIQAYDSTSSTVRKTAVFCLVAMVNRVG 480 (516)
T ss_pred hHHHHHhcCchHHhhhhHHHhHHHHHHHHh
Confidence 345666788999999999999999998753
No 208
>KOG2038|consensus
Probab=34.54 E-value=1.6e+02 Score=27.87 Aligned_cols=75 Identities=20% Similarity=0.270 Sum_probs=63.5
Q ss_pred CCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhc
Q psy11028 9 TSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMT 83 (136)
Q Consensus 9 ~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~ 83 (136)
.+.-+.||++|.-.+|-+..--||--..+.-.+...|.|.+--+-+-|..++..|...+|..-...+..+.+++-
T Consensus 314 ~D~L~~vk~raL~ti~~lL~~kPEqE~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vvi~EIer~~F 388 (988)
T KOG2038|consen 314 KDPLEEVKKRALKTIYDLLTNKPEQENNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVVIDEIERLAF 388 (988)
T ss_pred cccHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeehHHHHHHHHc
Confidence 457789999999999999999999877788888899999999999999999999999999765555555555443
No 209
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=34.28 E-value=1.3e+02 Score=23.84 Aligned_cols=63 Identities=17% Similarity=0.151 Sum_probs=51.1
Q ss_pred CCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh
Q psy11028 9 TSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL 72 (136)
Q Consensus 9 ~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~ 72 (136)
++.+.-.|+-|+.+......+.++.. ..++.+...|.|+++-|--|.==++-++.++.++.|.
T Consensus 128 ~~~~~w~rraaiv~~l~~~k~~~~~~-~if~i~E~~l~d~e~fV~KAigWaLrq~~k~~~e~~~ 190 (222)
T COG4912 128 EEDNRWERRAAIVHQLVYKKKTLDLL-EIFEIIELLLGDKEFFVQKAIGWALRQIGKHSNELWV 190 (222)
T ss_pred ccchHHHHHHHHHHHHHHhcCccchh-HHHHHHHHHccChHHHHHHHHHHHHHHHHhhchHHHH
Confidence 45667888888888887777776665 6788899999999999999988888999887776553
No 210
>PRK01233 glyS glycyl-tRNA synthetase subunit beta; Validated
Probab=34.00 E-value=2.4e+02 Score=25.98 Aligned_cols=22 Identities=23% Similarity=0.464 Sum_probs=18.8
Q ss_pred CCCChHHHHHHHHHHHHHHhHC
Q psy11028 9 TSTKPYLRKKAVLMMYKVFLKF 30 (136)
Q Consensus 9 ~~s~~~VRKKA~l~~~rl~~~~ 30 (136)
.+.+||=-|+|++.+.|++...
T Consensus 470 GS~DPfaLRR~A~GIirIi~~~ 491 (682)
T PRK01233 470 GSKDPFALRRAALGILRIILEK 491 (682)
T ss_pred CCCCCHHHHHHHHHHHHHHHhc
Confidence 5789999999999999987643
No 211
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=33.86 E-value=47 Score=25.02 Aligned_cols=69 Identities=16% Similarity=0.184 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHhcCCcchhhh----HHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHhhhHHHHH-HHHhccch
Q psy11028 54 SAAVNVVCELARKNPKNYLSL----APVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLT-NLIHRIIS 125 (136)
Q Consensus 54 ~aal~l~~~l~~~~p~~~~~l----vp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~-~iL~~~~s 125 (136)
..+..+++++.+.|++....+ +-.+++.+..-. .+.+.|++|+.++..+.+--.+.=+.+. .++...+|
T Consensus 119 ~~~~d~l~~i~~dN~~L~~~i~e~~I~~~i~ll~~~g---r~~~~L~~L~~lc~~~g~pI~~nQ~lI~~~ll~~~~~ 192 (207)
T PF01365_consen 119 LGALDVLTEIFRDNPELCESISEEHIEKFIELLRKHG---RQPRYLDFLSSLCVCNGNPIPENQNLICQELLLEGEA 192 (207)
T ss_dssp HHHHHHHHHHHTT----------------------------------------------------------------
T ss_pred chHHHHHHHHHHCcHHHHHHhhHHHHHHHHHHHHHcC---CChHHHHHHhhhcccCCcCCHHHHHHHHHHHcCCCCc
Confidence 456778899999999866544 566777776522 5666788888887544322223335555 55555553
No 212
>KOG2213|consensus
Probab=33.83 E-value=3.2e+02 Score=23.86 Aligned_cols=110 Identities=15% Similarity=0.290 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhcc---------
Q psy11028 14 YLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTT--------- 84 (136)
Q Consensus 14 ~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~~--------- 84 (136)
--++-|.--+-|+|++.|++....++.=.++.+|.|-||=--|+-=+=-+|+- +.....++.++.+|.+
T Consensus 39 k~k~lasq~ip~~fk~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~--d~~~rv~d~l~qLLnk~sl~~Lf~~ 116 (460)
T KOG2213|consen 39 KEKRLASQFIPRFFKHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG--DALSRVNDVLVQLLNKASLTGLFGQ 116 (460)
T ss_pred HHHHHHHHHHHHHHhhCchhhhHHHHhhhccccccchhhHHHHHhccchhccC--chhhhhHHHHHHHHHHHHHHHHHhh
Confidence 34667888888999999999999888888999999999977665443333433 2333445566665552
Q ss_pred --CCChhHHHHHHHHhhh-cCCC-----ChHHHhhhHHHHHHHHhccch
Q psy11028 85 --SSNNWMLIKIIKLFGA-LTPL-----EPRLGKKLIEPLTNLIHRIIS 125 (136)
Q Consensus 85 --v~~pWlqikiLk~L~~-l~~~-----e~~~~~~l~e~l~~iL~~~~s 125 (136)
+.+.-+.-|.+++++. +-+. .....+.+.+.+-..|+..+.
T Consensus 117 ~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtg 165 (460)
T KOG2213|consen 117 IEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTG 165 (460)
T ss_pred hhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccH
Confidence 2355555555555542 1111 123344555655555555444
No 213
>KOG3961|consensus
Probab=33.57 E-value=81 Score=25.27 Aligned_cols=74 Identities=16% Similarity=0.289 Sum_probs=50.2
Q ss_pred CCCCch--hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhcc---CCChhHHHHHHHHhhhcCC
Q psy11028 30 FPDALR--PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTT---SSNNWMLIKIIKLFGALTP 103 (136)
Q Consensus 30 ~P~~v~--~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~~---v~~pWlqikiLk~L~~l~~ 103 (136)
+||.+. .+.+.+.+.|.|-|+--=.-|-.-++++....++......|.++.-|++ ..|-=.....|+.++.+..
T Consensus 106 ~pe~Ldy~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~ 184 (262)
T KOG3961|consen 106 DPEKLDYCPYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVV 184 (262)
T ss_pred CHHhccchHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 455444 3567777777777666666666777888888888777788888887774 3455556666777766643
No 214
>TIGR02289 M3_not_pepF oligoendopeptidase, M3 family. This family consists of probable oligoendopeptidases in the M3 family, related to lactococcal PepF and group B streptococcal PepB (TIGR00181) but in a distinct clade with considerable sequence differences. The likely substrate is small peptides and not whole proteins, as with PepF, but members are not characterized and the activity profile may differ. Several bacteria have both a member of this family and a member of the PepF family.
Probab=33.52 E-value=62 Score=28.38 Aligned_cols=33 Identities=24% Similarity=0.206 Sum_probs=27.0
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCch
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR 35 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~ 35 (136)
++..++.+++..+||+|..+..+.+..+.+...
T Consensus 148 ~~~~~l~~~dr~~Rk~a~~a~~~~~~~~~~~~~ 180 (549)
T TIGR02289 148 QLKPYLQDPNRSTRKKAWYARSEFFAVVEEELD 180 (549)
T ss_pred HhhHHhhCCCHHHHHHHHHHHHHHHhcCchhHH
Confidence 466778899999999999999999987655443
No 215
>KOG1243|consensus
Probab=33.27 E-value=2.4e+02 Score=26.04 Aligned_cols=82 Identities=17% Similarity=0.254 Sum_probs=52.7
Q ss_pred hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCc-----hh-hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhH
Q psy11028 2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDAL-----RP-AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLA 75 (136)
Q Consensus 2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v-----~~-~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lv 75 (136)
+-+.+|+...+-.||=. ++.=+.++++.+ ++ .++.+...+.|.|+.+.--++-.+..++.
T Consensus 333 p~l~kLF~~~Dr~iR~~----LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~---------- 398 (690)
T KOG1243|consen 333 PVLLKLFKSPDRQIRLL----LLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAP---------- 398 (690)
T ss_pred hhHHHHhcCcchHHHHH----HHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHh----------
Confidence 44677788888777733 333334444433 32 67889999999999998888866655443
Q ss_pred HHHHHHhccCCChhHHHHHHHHhhhcCCCC
Q psy11028 76 PVFFKLMTTSSNNWMLIKIIKLFGALTPLE 105 (136)
Q Consensus 76 p~lv~iL~~v~~pWlqikiLk~L~~l~~~e 105 (136)
.| +..=++..+||.|+.+.+++
T Consensus 399 -----kL---~~~~Ln~Ellr~~ar~q~d~ 420 (690)
T KOG1243|consen 399 -----KL---SKRNLNGELLRYLARLQPDE 420 (690)
T ss_pred -----hh---chhhhcHHHHHHHHhhCccc
Confidence 22 11245667778777777744
No 216
>KOG1993|consensus
Probab=33.15 E-value=2.5e+02 Score=26.73 Aligned_cols=114 Identities=16% Similarity=0.229 Sum_probs=71.8
Q ss_pred hcCCCChHHHHHH---HHHHHHHHhHC-----CCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhc--------CCcc
Q psy11028 7 YLTSTKPYLRKKA---VLMMYKVFLKF-----PDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARK--------NPKN 70 (136)
Q Consensus 7 lL~~s~~~VRKKA---~l~~~rl~~~~-----P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~--------~p~~ 70 (136)
++.|.+.-+-+-| +..+.|+-|.+ ||+.++..+.+.+.+.+.|--+..-.+-.+..+.+. +.+.
T Consensus 86 Ll~~~~E~~nQlaiQ~AvlisrIARlDyPreWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~Lat~RL~a~rk~ 165 (978)
T KOG1993|consen 86 LLLHSDEENNQLAIQNAVLISRIARLDYPREWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILKALATKRLLADRKA 165 (978)
T ss_pred HHHhcccchhHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhHHhhhhHH
Confidence 4444444444444 34556776654 778888888888888888988888888888777552 3356
Q ss_pred hhhhHHHHHHHhcc-------------C-------CChhHHH-----HHHHHhhhcCCCChHHHhhhHHHHHHHHh
Q psy11028 71 YLSLAPVFFKLMTT-------------S-------SNNWMLI-----KIIKLFGALTPLEPRLGKKLIEPLTNLIH 121 (136)
Q Consensus 71 ~~~lvp~lv~iL~~-------------v-------~~pWlqi-----kiLk~L~~l~~~e~~~~~~l~e~l~~iL~ 121 (136)
|.+++|.+..++.- + -..-+|+ |.+|=+-.+|-.+|...+ +.+.+.+.+.
T Consensus 166 F~el~~~I~~~l~~~l~s~lt~~~lq~~ss~~ea~~LsalQ~s~~~lk~lRrlvv~G~~~P~kse-~~eRl~~F~e 240 (978)
T KOG1993|consen 166 FYELAPEILTILAPILWSSLTMMFLQSVSSIKEATLLSALQRSYLTLKVLRRLVVFGFQNPSKSE-FFERLLQFLE 240 (978)
T ss_pred HHHHhHHHHHHHHHHHhcchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhccCCcchhh-HHHHHHHHHH
Confidence 78888888886551 1 0113343 444444466777776554 6666665553
No 217
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=33.09 E-value=4.5e+02 Score=25.25 Aligned_cols=81 Identities=21% Similarity=0.434 Sum_probs=54.1
Q ss_pred HHHHHHHHhH-CCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcC------CcchhhhHHHHHHHhc----cCCCh
Q psy11028 20 VLMMYKVFLK-FPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN------PKNYLSLAPVFFKLMT----TSSNN 88 (136)
Q Consensus 20 ~l~~~rl~~~-~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~------p~~~~~lvp~lv~iL~----~v~~p 88 (136)
+.|+.|+=+. +|+-=+..++.+..+|.+.|.-+--+++..++++.++. ...|.+.+|.+-.++. .....
T Consensus 106 a~avs~IA~~DfPdeWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~r~l~Rsd~lf~ei~p~L~~~l~pfl~~~~~~ 185 (947)
T COG5657 106 ALAVSRIARLDFPDEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRLRRLFRSDALFLEIAPVLLSILCPFLFSSAYF 185 (947)
T ss_pred HHHHHHHHhccCcccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHhccch
Confidence 5566666655 56666667788888888877777777777777776643 2467777887776655 34556
Q ss_pred hHHHH-----HHHHhhh
Q psy11028 89 WMLIK-----IIKLFGA 100 (136)
Q Consensus 89 Wlqik-----iLk~L~~ 100 (136)
|-++. ++..|+.
T Consensus 186 ~s~~~~~~~~llslfqv 202 (947)
T COG5657 186 WSMSENLDESLLSLFQV 202 (947)
T ss_pred hHHhhcchhhHHHHHHH
Confidence 65554 5555554
No 218
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=33.00 E-value=2.1e+02 Score=21.37 Aligned_cols=119 Identities=13% Similarity=0.154 Sum_probs=67.5
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHhHC-CC-----------------C------c--hhhHHHHHhhcC------------
Q psy11028 5 FIYLTSTKPYLRKKAVLMMYKVFLKF-PD-----------------A------L--RPAFPRLKEKLE------------ 46 (136)
Q Consensus 5 ~klL~~s~~~VRKKA~l~~~rl~~~~-P~-----------------~------v--~~~~~~l~~lL~------------ 46 (136)
.++--..-+-||-.|.-|+.++.... |. . . ...++.+.++|.
T Consensus 13 lrqa~EKiDrvR~~A~~~l~~ll~~~~~~~~~ip~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~~~~y~~~ll~Gl 92 (193)
T PF12612_consen 13 LRQAAEKIDRVREVAGKCLQRLLHSQDPTIPHIPHREELQDIFPSESEASLNWSSSSEYFPRLVKLLDLPEYRYSLLSGL 92 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCcHHHHHHHcccccccccccCCHHHHHHHHHHHhccHHHHHHHHhHH
Confidence 33444556779999999999998332 10 0 0 013455555553
Q ss_pred -----CCChhHHHHHHHHHHHHHh---cCCcchhhhHHHHHHHhcc------CCChhHHHHH--HHH--hhhcCCCCh-H
Q psy11028 47 -----DPDSGVQSAAVNVVCELAR---KNPKNYLSLAPVFFKLMTT------SSNNWMLIKI--IKL--FGALTPLEP-R 107 (136)
Q Consensus 47 -----D~d~~V~~aal~l~~~l~~---~~p~~~~~lvp~lv~iL~~------v~~pWlqiki--Lk~--L~~l~~~e~-~ 107 (136)
....+++-++...+.+.+. .+++....+...++++++. +.-|++++-- |.- |..+..+++ .
T Consensus 93 v~S~G~~tesl~~~s~~AL~~~~~~~~~~~~~~~~v~~~l~~il~~~~~~dRv~vP~l~tl~~Ll~~~~~~~~~~~~~~~ 172 (193)
T PF12612_consen 93 VVSAGGLTESLVRASSAALLSYLRELSDSPEELEQVLSDLLSILKENLRNDRVVVPLLKTLDFLLSSGVFDSLPEDSDSP 172 (193)
T ss_pred HhcCCCCchhHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCCCCCeeecHHHHHHHHHhCcchhcccccccch
Confidence 2456677777777777764 5677778889999999984 3446654421 111 111222221 3
Q ss_pred HHhhhHHHHHHHHhcc
Q psy11028 108 LGKKLIEPLTNLIHRI 123 (136)
Q Consensus 108 ~~~~l~e~l~~iL~~~ 123 (136)
..+++.+.+..-..++
T Consensus 173 ~~~~L~~~~~~e~~~s 188 (193)
T PF12612_consen 173 FLRKLFDLVQKEHKKS 188 (193)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 4566666666555443
No 219
>PF09088 MIF4G_like: MIF4G like; InterPro: IPR015172 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 1", and is found in nuclear cap-binding proteins and eIF4G. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA.; GO: 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A.
Probab=32.75 E-value=1.2e+02 Score=23.26 Aligned_cols=27 Identities=11% Similarity=0.209 Sum_probs=19.1
Q ss_pred HHHHHHHHHhcCCcchhhhHHHHHHHh
Q psy11028 56 AVNVVCELARKNPKNYLSLAPVFFKLM 82 (136)
Q Consensus 56 al~l~~~l~~~~p~~~~~lvp~lv~iL 82 (136)
=-++++|+|+..|+.+-+.+...++.|
T Consensus 92 Y~sllielCk~~P~~i~pv~~~air~l 118 (191)
T PF09088_consen 92 YHSLLIELCKLSPSAIPPVLGRAIRFL 118 (191)
T ss_dssp HHHHHHHHHHHSTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 345789999999987666555555554
No 220
>PRK06030 hypothetical protein; Provisional
Probab=31.91 E-value=1.7e+02 Score=20.83 Aligned_cols=47 Identities=11% Similarity=0.169 Sum_probs=34.0
Q ss_pred hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhccCC
Q psy11028 37 AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSS 86 (136)
Q Consensus 37 ~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~~v~ 86 (136)
-.+.+.+.+. +||+.++-++..+.+.. .|+ .|+..+..+-+.|..+.
T Consensus 71 sl~~IG~~FG-RDHSTV~haikkIe~~~-~d~-~lk~~v~~L~~~l~~~~ 117 (124)
T PRK06030 71 PMNEVALAFG-RDRTTVGHACHTVEDLR-DDA-AFDARVSVLERIVNSAF 117 (124)
T ss_pred CHHHHHHHHC-CChhHHHHHHHHHHHHh-hCH-HHHHHHHHHHHHHHHHH
Confidence 4566788887 99999999999888875 554 46666666666665443
No 221
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=31.86 E-value=50 Score=19.33 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=13.4
Q ss_pred hhhcCCCChHHHhhhHHHHHHHHhcc
Q psy11028 98 FGALTPLEPRLGKKLIEPLTNLIHRI 123 (136)
Q Consensus 98 L~~l~~~e~~~~~~l~e~l~~iL~~~ 123 (136)
+++|...++...+++...+..+|+-+
T Consensus 13 ~~fl~~~~~~~~~~llpvi~tlL~fs 38 (46)
T PF01465_consen 13 LQFLESREPSEREQLLPVIATLLKFS 38 (46)
T ss_dssp HHHHTTSS---HHHHHHHHHHHTT--
T ss_pred HHHhcCCchhhHHHHHHHHHHHHCCC
Confidence 34555555666677777777776544
No 222
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=31.08 E-value=1.3e+02 Score=26.24 Aligned_cols=35 Identities=26% Similarity=0.399 Sum_probs=24.4
Q ss_pred hHHHH-HhhcCCCChhHHHHHHHHHHHHHhcCCcch
Q psy11028 37 AFPRL-KEKLEDPDSGVQSAAVNVVCELARKNPKNY 71 (136)
Q Consensus 37 ~~~~l-~~lL~D~d~~V~~aal~l~~~l~~~~p~~~ 71 (136)
.++++ .-+|++..-+.+.++++++.++.+++...|
T Consensus 119 ~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRknnsdy 154 (475)
T PF04499_consen 119 TVEKLLDIMLNSQGGSSLVNGVSILIELIRKNNSDY 154 (475)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhccccc
Confidence 34443 444554668899999999999998874433
No 223
>PF05536 Neurochondrin: Neurochondrin
Probab=31.02 E-value=3.8e+02 Score=23.75 Aligned_cols=97 Identities=22% Similarity=0.306 Sum_probs=58.1
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCC-------chh--hHHHHHhhcCC-------CChhHHHHHHHHHHHHHhcC
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDA-------LRP--AFPRLKEKLED-------PDSGVQSAAVNVVCELARKN 67 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~-------v~~--~~~~l~~lL~D-------~d~~V~~aal~l~~~l~~~~ 67 (136)
..++|++.+ -=.|=|.+.+.+=+-+.-|. +-+ ..+.+.++|.- ....-..-|++++..++. +
T Consensus 10 c~~lL~~~~-D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~-~ 87 (543)
T PF05536_consen 10 CLSLLKSAD-DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR-D 87 (543)
T ss_pred HHHHhccCC-cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC-C
Confidence 455666666 55666666665444333221 111 23445556643 223444556777777766 4
Q ss_pred Cc-----chhhhHHHHHHHhccCCChhHHHHHHHHhhhcC
Q psy11028 68 PK-----NYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALT 102 (136)
Q Consensus 68 p~-----~~~~lvp~lv~iL~~v~~pWlqikiLk~L~~l~ 102 (136)
|+ .+..-+|.+++++.+.++.=..--.+++|..+.
T Consensus 88 ~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia 127 (543)
T PF05536_consen 88 PELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA 127 (543)
T ss_pred hhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH
Confidence 43 466789999999988666456667777777776
No 224
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=30.88 E-value=1.2e+02 Score=27.98 Aligned_cols=50 Identities=20% Similarity=0.225 Sum_probs=39.0
Q ss_pred chhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhh----HHHHHHHhc
Q psy11028 34 LRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSL----APVFFKLMT 83 (136)
Q Consensus 34 v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~l----vp~lv~iL~ 83 (136)
++.|+|++.+.|+..|--|..++++++-+++..-.+.|..+ ...++..|.
T Consensus 637 ~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~ls 690 (858)
T COG5215 637 ASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLS 690 (858)
T ss_pred HhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc
Confidence 55688999999999999999999999999998766656544 444455554
No 225
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=29.84 E-value=3.4e+02 Score=22.78 Aligned_cols=103 Identities=20% Similarity=0.324 Sum_probs=65.5
Q ss_pred hhcCCCChHHHHHHHHHHHHHHhHCCCCch-----------------hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCC
Q psy11028 6 IYLTSTKPYLRKKAVLMMYKVFLKFPDALR-----------------PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNP 68 (136)
Q Consensus 6 klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-----------------~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p 68 (136)
.+|++ +-+.+.|+-++.=+..-.++... ...+++.+...+.+.+.-.+-+..+..+.++=|
T Consensus 278 ~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP 355 (415)
T PF12460_consen 278 ELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVP 355 (415)
T ss_pred HHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCC
Confidence 34444 66778888877766666555432 124556666666666666667777777788778
Q ss_pred cc-hhhhHHHHHHHhc---cCCChhHHHHHHHHhhhcCCCChHHHh
Q psy11028 69 KN-YLSLAPVFFKLMT---TSSNNWMLIKIIKLFGALTPLEPRLGK 110 (136)
Q Consensus 69 ~~-~~~lvp~lv~iL~---~v~~pWlqikiLk~L~~l~~~e~~~~~ 110 (136)
.. +..-.|.+..+|- +.+++=++...|++|..+-.+++....
T Consensus 356 ~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~ 401 (415)
T PF12460_consen 356 KSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELIS 401 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHH
Confidence 53 3444444444433 357887888889998888877655433
No 226
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=29.71 E-value=1.9e+02 Score=23.29 Aligned_cols=58 Identities=12% Similarity=0.164 Sum_probs=45.0
Q ss_pred ChhHHHHHHHHHHHHHhcCCc---chh--hhHHHHHHHhccCCChhHHHHHHHHhhhcCCCCh
Q psy11028 49 DSGVQSAAVNVVCELARKNPK---NYL--SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEP 106 (136)
Q Consensus 49 d~~V~~aal~l~~~l~~~~p~---~~~--~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~ 106 (136)
+...+..|+.++..++--+|. .|- .-...+.++|....+|=+|+..|..|-..--+.|
T Consensus 104 ~~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p 166 (257)
T PF08045_consen 104 NDSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSP 166 (257)
T ss_pred hhHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcCh
Confidence 556788899999999998885 232 3467788899777899999999999886654444
No 227
>TIGR02568 LcrE type III secretion regulator YopN/LcrE/InvE/MxiC. This protein is found in type III secretion operons and, in Yersinia is localized to the cell surface and is involved in the Low-Calicium Response (LCR), possibly by sensing the calcium concentration. In Salmonella, the gene is known as InvE and is believed to perform an essential role in the secretion process and interacts with the proteins SipBCD and SicA.//Altered name to reflect regulatory role. Added GO and role IDs. Negative regulation of type III secretion in Y pestis is mediated in part by a multiprotein complex that has been proposed to act as a physical impediment to type III secretion by blocking the entrance to the secretion apparatus prior to contact with mammalian cells. This complex is composed of YopN, its heterodimeric secretion chaperone SycN-YscB, and TyeA. PubMed: 15701523
Probab=29.67 E-value=1e+02 Score=24.14 Aligned_cols=51 Identities=14% Similarity=0.001 Sum_probs=39.5
Q ss_pred HHHHhcc-CCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccchhhh
Q psy11028 78 FFKLMTT-SSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLSC 128 (136)
Q Consensus 78 lv~iL~~-v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~s~sv 128 (136)
+...+.+ .+||+-|+-.|+.+..-.+.++...+++...+.+++...+-..+
T Consensus 81 ll~~l~~~f~D~s~~~laL~~ll~~~~~~~~~~~~l~~~~~~ll~~~~~~~i 132 (240)
T TIGR02568 81 LLALARGAFPDPSDQALALRAALQRLELDPAERKALEEAAQALLELEDGPTI 132 (240)
T ss_pred HHHHHHhhCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHhhccch
Confidence 3443443 58999999999999888888888888899998888885554433
No 228
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=29.59 E-value=3.8e+02 Score=23.38 Aligned_cols=105 Identities=19% Similarity=0.270 Sum_probs=57.1
Q ss_pred CChHHHHHHHHHHHHHHhH---C-----------CCCchhhHHHHHhhc----CCCChhHHHHHHHHHHHHHhcCCcchh
Q psy11028 11 TKPYLRKKAVLMMYKVFLK---F-----------PDALRPAFPRLKEKL----EDPDSGVQSAAVNVVCELARKNPKNYL 72 (136)
Q Consensus 11 s~~~VRKKA~l~~~rl~~~---~-----------P~~v~~~~~~l~~lL----~D~d~~V~~aal~l~~~l~~~~p~~~~ 72 (136)
.++++|..|++++..+..+ . ....+.+.+.+.+.| ++.|......++-.+--+. ..
T Consensus 447 ~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g------~~ 520 (618)
T PF01347_consen 447 NSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLG------HP 520 (618)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-------G
T ss_pred CChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccC------Cc
Confidence 6789999999998876653 1 233334445544444 4455555554444443321 12
Q ss_pred hhHHHHHHHhccC--CChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccc
Q psy11028 73 SLAPVFFKLMTTS--SNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRII 124 (136)
Q Consensus 73 ~lvp~lv~iL~~v--~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~ 124 (136)
..++.+..++.+. ..+.+++..+..|+.+....| ++..+.+.+|+.+..
T Consensus 521 ~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~---~~v~~~l~~I~~n~~ 571 (618)
T PF01347_consen 521 ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP---EKVREILLPIFMNTT 571 (618)
T ss_dssp GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H---HHHHHHHHHHHH-TT
T ss_pred hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc---HHHHHHHHHHhcCCC
Confidence 4566666666543 467777777777776655544 445566666665443
No 229
>PF11882 DUF3402: Domain of unknown function (DUF3402); InterPro: IPR021819 This domain is functionally uncharacterised. This domain is found in eukaryotes. This presumed domain is typically between 350 to 473 amino acids in length. This domain is found associated with PF07923 from PFAM.
Probab=29.43 E-value=99 Score=26.47 Aligned_cols=63 Identities=14% Similarity=0.205 Sum_probs=45.7
Q ss_pred cCCCChhHHHHHHHHHHHHHhcCCcchhhh-----HHHHHHHhccCCChhHHHHHHHHhhhcCCCChHH
Q psy11028 45 LEDPDSGVQSAAVNVVCELARKNPKNYLSL-----APVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRL 108 (136)
Q Consensus 45 L~D~d~~V~~aal~l~~~l~~~~p~~~~~l-----vp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~ 108 (136)
.+-++.....+.+.++..|++..+.-...+ .+-|-+.| .+++|=+|..+||+|....|.-+|-
T Consensus 261 ~s~Rn~fs~in~LrIlqKitK~k~~R~~~Lv~~Kss~iLKk~l-~v~~~~l~ly~LKl~K~qvPy~GRK 328 (409)
T PF11882_consen 261 YSWRNFFSLINLLRILQKITKNKPHRIKMLVQYKSSNILKKIL-KVPNPMLQLYILKLLKSQVPYCGRK 328 (409)
T ss_pred hchhHHHHHHHHHHHHHHHHcCcHHHHHHHHccCcHHHHHHHH-cCCChHHHHHHHHHHHHhcccccch
Confidence 344566667777777888888877655444 33344444 7899999999999999999876653
No 230
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=29.13 E-value=2.2e+02 Score=20.47 Aligned_cols=66 Identities=12% Similarity=0.205 Sum_probs=46.0
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh----hhHHHHHH-HhccCC-ChhHHHHHHHHhhhcCCC
Q psy11028 39 PRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL----SLAPVFFK-LMTTSS-NNWMLIKIIKLFGALTPL 104 (136)
Q Consensus 39 ~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~----~lvp~lv~-iL~~v~-~pWlqikiLk~L~~l~~~ 104 (136)
+.+.+.+..+++.+...++.++..+..+.-+..+ -+.+.++. ++.... ..|-+.-.|.++..+..+
T Consensus 76 ~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 76 PALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 3344444456799999999999999876544333 34555555 555433 469889999999988864
No 231
>KOG3252|consensus
Probab=28.92 E-value=44 Score=26.04 Aligned_cols=30 Identities=20% Similarity=0.213 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhHCCCCchh--hHHHHHhhcC
Q psy11028 17 KKAVLMMYKVFLKFPDALRP--AFPRLKEKLE 46 (136)
Q Consensus 17 KKA~l~~~rl~~~~P~~v~~--~~~~l~~lL~ 46 (136)
+-|.+|++|+|+.+|+.... ....+.+.|.
T Consensus 43 leanL~vLkLYQfnP~~~nt~itaqILlKaL~ 74 (217)
T KOG3252|consen 43 LEANLAVLKLYQFNPEFFNTTITAQILLKALT 74 (217)
T ss_pred hhHHHHHHHHHhcCHHHhhhHHHHHHHHHHHh
Confidence 56899999999999998764 3455555554
No 232
>PF14841 FliG_M: FliG middle domain; PDB: 3HJL_A 3AJC_A 1LKV_X 3SOH_D 3USY_B 3USW_A.
Probab=28.90 E-value=1.6e+02 Score=18.85 Aligned_cols=72 Identities=11% Similarity=0.203 Sum_probs=46.8
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHH
Q psy11028 39 PRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTN 118 (136)
Q Consensus 39 ~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~ 118 (136)
+.+...|.+++|-+++-.++-+ +|+ .--++|... .+=.|..+++=++.++..+|...+.+.+.+.+
T Consensus 3 ~~l~~~L~~EhPq~iAliLs~L------~~~-------~AA~VL~~l-p~e~r~~v~~Ria~~~~v~~~~i~~ie~~L~~ 68 (79)
T PF14841_consen 3 EQLAALLKDEHPQTIALILSYL------PPE-------QAAEVLSQL-PEELRAEVVRRIARLESVSPEVIEEIEEVLEE 68 (79)
T ss_dssp HHHHHHHTTS-HHHHHHHHHTS-------HH-------HHHHHHHTS--HHHHHHHHHHHHTCCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHcC------CHH-------HHHHHHHHC-CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Confidence 4567788888888877665421 111 122344443 45588899998999999988887777777777
Q ss_pred HHhccc
Q psy11028 119 LIHRII 124 (136)
Q Consensus 119 iL~~~~ 124 (136)
-+....
T Consensus 69 ~l~~~~ 74 (79)
T PF14841_consen 69 KLEAVG 74 (79)
T ss_dssp HCHHHH
T ss_pred HHHhhc
Confidence 665443
No 233
>KOG4535|consensus
Probab=28.41 E-value=3.1e+02 Score=24.81 Aligned_cols=131 Identities=16% Similarity=0.216 Sum_probs=0.0
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHh-------------HCCCCchhhHHHHHhh-cCCCChhHHHHHHHHHHHH-------
Q psy11028 5 FIYLTSTKPYLRKKAVLMMYKVFL-------------KFPDALRPAFPRLKEK-LEDPDSGVQSAAVNVVCEL------- 63 (136)
Q Consensus 5 ~klL~~s~~~VRKKA~l~~~rl~~-------------~~P~~v~~~~~~l~~l-L~D~d~~V~~aal~l~~~l------- 63 (136)
.+-+.|...-||.-|..|+..... ..||.=+...+.+.-+ |.|.++..=..++.+...+
T Consensus 2 ~~~~r~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~f 81 (728)
T KOG4535|consen 2 QSKMRSYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQF 81 (728)
T ss_pred CcchhhHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHH
Q ss_pred ----HhcCCcchhhhHHHHHH-----------HhccCCChhHHHHHHHHhhhcCCCCh------HHHhhhHHHHHHHHhc
Q psy11028 64 ----ARKNPKNYLSLAPVFFK-----------LMTTSSNNWMLIKIIKLFGALTPLEP------RLGKKLIEPLTNLIHR 122 (136)
Q Consensus 64 ----~~~~p~~~~~lvp~lv~-----------iL~~v~~pWlqikiLk~L~~l~~~e~------~~~~~l~e~l~~iL~~ 122 (136)
+...|..|.+|.-.+.. +|..-..|=....++|.|+.|....| ..--+....+.+.+.+
T Consensus 82 ls~a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~ 161 (728)
T KOG4535|consen 82 LSVAEDTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRH 161 (728)
T ss_pred HHHHhccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhc
Q ss_pred cchhhhhhhcccC
Q psy11028 123 IISLSCWTGIKPM 135 (136)
Q Consensus 123 ~~s~sv~~~~k~~ 135 (136)
.+..+-+.++-+|
T Consensus 162 ~d~~v~vs~l~~~ 174 (728)
T KOG4535|consen 162 KDVNVRVSSLTLL 174 (728)
T ss_pred CCCChhhHHHHHH
No 234
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=28.25 E-value=1.4e+02 Score=26.63 Aligned_cols=57 Identities=12% Similarity=0.183 Sum_probs=40.7
Q ss_pred cCCCChHHHHHHHHHHHHHHhHCCC---CchhhHHHHHhhcCCCChhH----------HHHHHHHHHHHHh
Q psy11028 8 LTSTKPYLRKKAVLMMYKVFLKFPD---ALRPAFPRLKEKLEDPDSGV----------QSAAVNVVCELAR 65 (136)
Q Consensus 8 L~~s~~~VRKKA~l~~~rl~~~~P~---~v~~~~~~l~~lL~D~d~~V----------~~aal~l~~~l~~ 65 (136)
.-|.++.||.-|+-++-++.+..|. ++..|...+-+ ++|..+.. .-.++.+..|+.+
T Consensus 480 tvHvd~~I~~~A~~aLk~la~~~p~~~~vi~~Fa~Fif~-~~d~~~~~~~~~~l~~~~~~~~L~lyveLL~ 549 (552)
T PF14222_consen 480 TVHVDPNIRESAAQALKRLARDKPNRQQVITGFARFIFR-FDDKYPSMYDGGYLGSGEIESLLKLYVELLE 549 (552)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHee-CcccCccchhhhccchHHHHHHHHHHHHHHH
Confidence 3589999999999999999988872 22235555555 78877777 6666666666543
No 235
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=27.83 E-value=42 Score=30.54 Aligned_cols=46 Identities=28% Similarity=0.554 Sum_probs=34.4
Q ss_pred hHHHHHhhcCCCChhHHHHHHHHHHHHHhcC-------CcchhhhHHHHHHHh
Q psy11028 37 AFPRLKEKLEDPDSGVQSAAVNVVCELARKN-------PKNYLSLAPVFFKLM 82 (136)
Q Consensus 37 ~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~-------p~~~~~lvp~lv~iL 82 (136)
-.+-+.+.+.|.|+....++++.+.|+.+.+ |++++=+.|....++
T Consensus 48 dLellVeriqd~d~~l~~~sLn~LkeviksStSsmtavpkplkfLrp~y~dl~ 100 (881)
T COG5110 48 DLELLVERIQDPDIDLQNNSLNMLKEVIKSSTSSMTAVPKPLKFLRPNYLDLL 100 (881)
T ss_pred cHHHHHHHhhCCChHHHHHHHHHHHHHHhccccccccCCchhhhcCCCcchHH
Confidence 3677889999999999999999999998865 444544444433333
No 236
>KOG2549|consensus
Probab=27.34 E-value=4.7e+02 Score=23.66 Aligned_cols=116 Identities=16% Similarity=0.246 Sum_probs=62.9
Q ss_pred hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCC--------CChhHHHHHHHHHHHHHhcCCcchh-
Q psy11028 2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLED--------PDSGVQSAAVNVVCELARKNPKNYL- 72 (136)
Q Consensus 2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D--------~d~~V~~aal~l~~~l~~~~p~~~~- 72 (136)
-+|.+.+..+++.-|+.|.-++. .+|. +..+.+++...++| +|...+...+-++-.+. +||..|.
T Consensus 210 ~~It~a~~g~~~~~r~eAL~sL~----TDsG-L~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl-~Np~i~le 283 (576)
T KOG2549|consen 210 KEITEACTGSDEPLRQEALQSLE----TDSG-LQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLL-DNPNIFLE 283 (576)
T ss_pred HHHHHHHhcCCHHHHHHHHHhhc----cCcc-HHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHh-cCCccchh
Confidence 46777888899999999987754 2322 33456666666655 23444443333333322 5775442
Q ss_pred ----hhHHHHHHHhcc--------CCChhHHHH-----HHHHhhhcCCCChHHHhhhHHHHHHHHhcc
Q psy11028 73 ----SLAPVFFKLMTT--------SSNNWMLIK-----IIKLFGALTPLEPRLGKKLIEPLTNLIHRI 123 (136)
Q Consensus 73 ----~lvp~lv~iL~~--------v~~pWlqik-----iLk~L~~l~~~e~~~~~~l~e~l~~iL~~~ 123 (136)
.++|.+...+-+ ..+-|..=. +..++..++..-..+...+...+..++...
T Consensus 284 pYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~ 351 (576)
T KOG2549|consen 284 PYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDN 351 (576)
T ss_pred hHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCC
Confidence 578888876552 233343211 123344444433345555666666655444
No 237
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.14 E-value=79 Score=23.14 Aligned_cols=73 Identities=8% Similarity=0.126 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhcCCcchhhhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccchhh
Q psy11028 53 QSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLS 127 (136)
Q Consensus 53 ~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~s~s 127 (136)
+.+++.++.+=..-+|+.-.+|...|..+.+. +|=-|+..+|+=+.+...-...+.-.-+.+.+++..+.-++
T Consensus 85 iaga~elvea~~~l~pdevqqf~tdlt~ltkd--spktqva~lrfkkvmskv~t~vasgvr~ivvdvlseaakka 157 (160)
T COG4306 85 IAGAVELVEAGENLNPDEVQQFRTDLTDLTKD--SPKTQVATLRFKKVMSKVATSVASGVRDIVVDVLSEAAKKA 157 (160)
T ss_pred HhHHHHHHHccccCCHHHHHHHHhhHHHHhhc--CchhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 34455554444456777777777777777766 58999999998877776555555566677777776554443
No 238
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=27.11 E-value=1e+02 Score=23.00 Aligned_cols=63 Identities=25% Similarity=0.252 Sum_probs=37.2
Q ss_pred hhhhhcCC--CChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChh------HHHHHHHHHHHHHhcCC
Q psy11028 3 GYFIYLTS--TKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSG------VQSAAVNVVCELARKNP 68 (136)
Q Consensus 3 ~V~klL~~--s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~------V~~aal~l~~~l~~~~p 68 (136)
|...||+. .++.||+-|+-++.+ ..+|-+..+.+.+.+.|.-...+ .=++-...+.+-+..||
T Consensus 80 ~aLeLL~~~f~~~~VR~yAV~~L~~---~sd~eL~~yL~QLVQaLKyE~~~~~~~~~~~s~La~fLl~Ral~s~ 150 (166)
T cd00870 80 DALELLSPYFTNPVVRKYAVSRLKL---ASDEELLLYLLQLVQALKYENLDLSPLPRLDSPLADFLIERALKNP 150 (166)
T ss_pred HHHHHcCccCCCHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHhcccccccccccccHHHHHHHHHHhcCH
Confidence 45566653 678899988877764 34455666777777887644331 22333334445455554
No 239
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=27.05 E-value=2.2e+02 Score=29.26 Aligned_cols=31 Identities=13% Similarity=0.240 Sum_probs=26.5
Q ss_pred hhcCCCChHHHHHHHHHHHHHHhHCCCCchh
Q psy11028 6 IYLTSTKPYLRKKAVLMMYKVFLKFPDALRP 36 (136)
Q Consensus 6 klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~ 36 (136)
++..+.++-||++|+-.+.+++..+-+....
T Consensus 1354 ~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~ 1384 (1780)
T PLN03076 1354 ELSFDPRPEIRKSALQVLFDTLRNHGHLFSL 1384 (1780)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHhhccCCH
Confidence 3456899999999999999999998877763
No 240
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=27.04 E-value=2.2e+02 Score=24.80 Aligned_cols=59 Identities=20% Similarity=0.133 Sum_probs=49.0
Q ss_pred CCChHHHHHHHHHHHHHHhHCCCCch-h--hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCC
Q psy11028 10 STKPYLRKKAVLMMYKVFLKFPDALR-P--AFPRLKEKLEDPDSGVQSAAVNVVCELARKNP 68 (136)
Q Consensus 10 ~s~~~VRKKA~l~~~rl~~~~P~~v~-~--~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p 68 (136)
+.+...|..|.-|+=.+-++.|+++. + +++.+-+.|+++++.|..|.-..+..+....+
T Consensus 385 ~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~ 446 (501)
T PF13001_consen 385 SEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFK 446 (501)
T ss_pred cccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHh
Confidence 46788999999999999999999994 3 67888888899999999988777777766443
No 241
>KOG0211|consensus
Probab=26.87 E-value=5.3e+02 Score=24.14 Aligned_cols=93 Identities=18% Similarity=0.154 Sum_probs=65.6
Q ss_pred CCChHHHHHHHHHHHHHHhHCCC--CchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCc--chhhhHHHHHHHhccC
Q psy11028 10 STKPYLRKKAVLMMYKVFLKFPD--ALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK--NYLSLAPVFFKLMTTS 85 (136)
Q Consensus 10 ~s~~~VRKKA~l~~~rl~~~~P~--~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~--~~~~lvp~lv~iL~~v 85 (136)
+.--.||+.|+.++-++.+..-. .....++++..+..+.+-.+=.+.+..+.+++..-.+ ..+.+.|.+.+..+.
T Consensus 529 d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D- 607 (759)
T KOG0211|consen 529 DHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKD- 607 (759)
T ss_pred hhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccC-
Confidence 34457999999999999887751 1223567777776666677777777777777775443 235678888887766
Q ss_pred CChhHHHHHHHHhhhcCC
Q psy11028 86 SNNWMLIKIIKLFGALTP 103 (136)
Q Consensus 86 ~~pWlqikiLk~L~~l~~ 103 (136)
+.|=.-++..|.|..+.+
T Consensus 608 ~vanVR~nvak~L~~i~~ 625 (759)
T KOG0211|consen 608 PVANVRINVAKHLPKILK 625 (759)
T ss_pred CchhhhhhHHHHHHHHHh
Confidence 677778888888887765
No 242
>KOG4524|consensus
Probab=26.51 E-value=2.5e+02 Score=27.01 Aligned_cols=90 Identities=12% Similarity=0.163 Sum_probs=66.5
Q ss_pred chhhHHHHHhhcCCCChhHHHHHHHHHHH---HHhcCCcchhhhH----HHHHHHhccCCChhHHHHHHHHhhhcCCC--
Q psy11028 34 LRPAFPRLKEKLEDPDSGVQSAAVNVVCE---LARKNPKNYLSLA----PVFFKLMTTSSNNWMLIKIIKLFGALTPL-- 104 (136)
Q Consensus 34 v~~~~~~l~~lL~D~d~~V~~aal~l~~~---l~~~~p~~~~~lv----p~lv~iL~~v~~pWlqikiLk~L~~l~~~-- 104 (136)
+.+..++-..+|.+++.+.-..++-++.. +.+.+++.+.+++ |.++..++. .||-....+++.+..++..
T Consensus 801 v~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~-k~~L~v~~a~~~i~~m~~~sg 879 (1014)
T KOG4524|consen 801 VLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLC-KDPLIVQRAFSCIEQMGKYSG 879 (1014)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhc-CchHHHHHHHHHHHHHHHHhh
Confidence 34467888999999999999998887744 4567777776654 556667766 7999999999999999853
Q ss_pred C---hHHHhhhHHHHHHHHhccc
Q psy11028 105 E---PRLGKKLIEPLTNLIHRII 124 (136)
Q Consensus 105 e---~~~~~~l~e~l~~iL~~~~ 124 (136)
| .|.-+.+.+.+...++..-
T Consensus 880 DFv~sR~l~dvlP~l~~~~~~~~ 902 (1014)
T KOG4524|consen 880 DFVASRFLEDVLPWLKHLCQDSF 902 (1014)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3555666666766666544
No 243
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=26.39 E-value=55 Score=20.30 Aligned_cols=39 Identities=21% Similarity=0.512 Sum_probs=20.7
Q ss_pred HHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhh
Q psy11028 23 MYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLS 73 (136)
Q Consensus 23 ~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~ 73 (136)
+..+++.+|++++.+. +.|..+||.++ ++...||+.|..
T Consensus 13 lR~~vq~NP~lL~~lL----qql~~~nP~l~--------q~I~~n~e~Fl~ 51 (59)
T PF09280_consen 13 LRQLVQQNPQLLPPLL----QQLGQSNPQLL--------QLIQQNPEEFLR 51 (59)
T ss_dssp HHHHHHC-GGGHHHHH----HHHHCCSHHHH--------HHHHHTHHHHHH
T ss_pred HHHHHHHCHHHHHHHH----HHHhccCHHHH--------HHHHHCHHHHHH
Confidence 4456677777666533 44445666543 345556655543
No 244
>KOG1820|consensus
Probab=25.67 E-value=2.6e+02 Score=26.36 Aligned_cols=68 Identities=18% Similarity=0.346 Sum_probs=57.3
Q ss_pred hhhhhhcCCCChHHHHHHHHHHHHHHhHCCC-Cch-----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCc
Q psy11028 2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPD-ALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK 69 (136)
Q Consensus 2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~-~v~-----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~ 69 (136)
..|...+.+.+|-+|--....+-|.+++... .++ ...+.+.+..+|.|.-|=.||...+..+.+...+
T Consensus 374 ~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge 447 (815)
T KOG1820|consen 374 EAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGE 447 (815)
T ss_pred HHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhH
Confidence 4577889999999999999999999999883 232 3678888999999999999999999998876543
No 245
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=25.47 E-value=2.4e+02 Score=25.76 Aligned_cols=68 Identities=24% Similarity=0.311 Sum_probs=54.7
Q ss_pred hhhhhhcCC-CChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCc
Q psy11028 2 LGYFIYLTS-TKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK 69 (136)
Q Consensus 2 ~~V~klL~~-s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~ 69 (136)
.+|...|+| .--|||++-+-.+|.+..--|+.-.+++.-+...|.|.+--|.+-|--++..+....|.
T Consensus 193 levle~ls~d~i~~Vk~qvv~~VydLL~a~peqe~nLl~L~INKlGDk~~kvsskasY~ilkLe~~hP~ 261 (821)
T COG5593 193 LEVLEVLSHDPIQYVKKQVVRLVYDLLEARPEQEVNLLHLFINKLGDKRDKVSSKASYVILKLELLHPG 261 (821)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhhccchhhhhhhhhHHHHHHHhcCCc
Confidence 356677765 56899999999999999999988777777777888888888888887788777766664
No 246
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=25.40 E-value=5.6e+02 Score=23.88 Aligned_cols=94 Identities=12% Similarity=0.227 Sum_probs=57.2
Q ss_pred HHhhc-CCCChhHHHHHHHHHHHH----HhcCCcchhhhHHHHHHHhccCCChhHHH--HHHHHhhhcC----CCChHHH
Q psy11028 41 LKEKL-EDPDSGVQSAAVNVVCEL----ARKNPKNYLSLAPVFFKLMTTSSNNWMLI--KIIKLFGALT----PLEPRLG 109 (136)
Q Consensus 41 l~~lL-~D~d~~V~~aal~l~~~l----~~~~p~~~~~lvp~lv~iL~~v~~pWlqi--kiLk~L~~l~----~~e~~~~ 109 (136)
+...| +-++++.-.-.+.++..+ ...+|+.-.-..|.+.++|+++-+|..-| +.+++++.+. +-|..++
T Consensus 51 vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~ 130 (885)
T COG5218 51 VNTILACKKNPSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLA 130 (885)
T ss_pred HHHhhccccCCCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHH
Confidence 33344 344444444444444333 44667775555777888999987777665 4666666553 3345566
Q ss_pred hhhHHHHHHHHhccchhhhhhhccc
Q psy11028 110 KKLIEPLTNLIHRIISLSCWTGIKP 134 (136)
Q Consensus 110 ~~l~e~l~~iL~~~~s~sv~~~~k~ 134 (136)
.-+.|.+.+-+-...+.+=+.|+|+
T Consensus 131 N~L~ekl~~R~~DRE~~VR~eAv~~ 155 (885)
T COG5218 131 NGLLEKLSERLFDREKAVRREAVKV 155 (885)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHH
Confidence 6677777776666666666666664
No 247
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.69 E-value=1.7e+02 Score=20.75 Aligned_cols=33 Identities=15% Similarity=0.388 Sum_probs=16.9
Q ss_pred hHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHh
Q psy11028 89 WMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIH 121 (136)
Q Consensus 89 WlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~ 121 (136)
+.|=.-|+-+..|+.-||..++++.|.+..+..
T Consensus 33 y~~~~al~y~~kFakldpe~a~e~veEL~~i~~ 65 (114)
T COG1460 33 YEQREALEYAEKFAKLDPEKARELVEELLSIVK 65 (114)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Confidence 444444555555555555555555555555444
No 248
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain.
Probab=24.63 E-value=2.3e+02 Score=19.52 Aligned_cols=54 Identities=15% Similarity=0.084 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhHCCCCchhhHHHHHhhcCCC-ChhHHHHHHHHHHHHHhcCCcc
Q psy11028 17 KKAVLMMYKVFLKFPDALRPAFPRLKEKLEDP-DSGVQSAAVNVVCELARKNPKN 70 (136)
Q Consensus 17 KKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~-d~~V~~aal~l~~~l~~~~p~~ 70 (136)
-|-+-.+...-..+|+....+...+.+.|.|. +.-|+.=++.++..+.++-+..
T Consensus 20 ~k~~~~I~~~t~~~~~~~~~i~~~l~~Rl~~~~~w~~v~KsL~llh~ll~~G~~~ 74 (127)
T smart00273 20 GKHLREIIQGTHNEKSSFAEIMAVLWRRLNDTKNWRVVYKALILLHYLLRNGSPR 74 (127)
T ss_pred HHHHHHHHHHHccCHhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHhcCCHH
Confidence 33333444444455577777888888899887 9999999999999999987753
No 249
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=24.60 E-value=81 Score=21.35 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=15.9
Q ss_pred hcCCCChHHHHHHHHHHHHHHhHCCCC
Q psy11028 7 YLTSTKPYLRKKAVLMMYKVFLKFPDA 33 (136)
Q Consensus 7 lL~~s~~~VRKKA~l~~~rl~~~~P~~ 33 (136)
-|+|-.+.||.-|..-+--+.+.+|+.
T Consensus 19 AMTHi~~~Ir~dsl~~L~~lL~~~p~~ 45 (102)
T PF12333_consen 19 AMTHISPDIREDSLKFLDLLLEHAPDE 45 (102)
T ss_pred HHHhCCHHHHHhHHHHHHHHHHHCChH
Confidence 345555666666666666666666655
No 250
>KOG1943|consensus
Probab=24.40 E-value=3e+02 Score=26.86 Aligned_cols=80 Identities=18% Similarity=0.240 Sum_probs=62.8
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCC-CCchhhHHHHHhhcCC-CChhHHHHHHHHHHHHHhcC---CcchhhhHHHH
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFP-DALRPAFPRLKEKLED-PDSGVQSAAVNVVCELARKN---PKNYLSLAPVF 78 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P-~~v~~~~~~l~~lL~D-~d~~V~~aal~l~~~l~~~~---p~~~~~lvp~l 78 (136)
+...+++++..||=.||=-+-|+....| ++++..++.+.+.+.- .+++....|+-.+-|++..- |+.+...+|-+
T Consensus 346 Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~dVvplI 425 (1133)
T KOG1943|consen 346 LLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLEDVVPLI 425 (1133)
T ss_pred HHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 4556789999999999999999999888 3444566777776654 36899999999999998865 67777788887
Q ss_pred HHHhc
Q psy11028 79 FKLMT 83 (136)
Q Consensus 79 v~iL~ 83 (136)
.+-|.
T Consensus 426 ~kaL~ 430 (1133)
T KOG1943|consen 426 LKALH 430 (1133)
T ss_pred HHHhh
Confidence 76555
No 251
>KOG0267|consensus
Probab=24.23 E-value=1.6e+02 Score=27.48 Aligned_cols=63 Identities=17% Similarity=0.238 Sum_probs=45.9
Q ss_pred HHhhcCCCChhHHHHHHHHHHHHHhcCC-cchhhhHHHHHHHhccCCChhHHHH---HHHHhhhcCC
Q psy11028 41 LKEKLEDPDSGVQSAAVNVVCELARKNP-KNYLSLAPVFFKLMTTSSNNWMLIK---IIKLFGALTP 103 (136)
Q Consensus 41 l~~lL~D~d~~V~~aal~l~~~l~~~~p-~~~~~lvp~lv~iL~~v~~pWlqik---iLk~L~~l~~ 103 (136)
+..+-.-.|.+|..=+++.+.|..+.-. +.|..+.|.+.++|....+.-++++ +||+++.|++
T Consensus 681 I~s~~kl~D~sV~ADvL~Iltek~eiLtLDl~t~l~P~lt~LLgS~~e~~v~vsld~Llklv~~fgt 747 (825)
T KOG0267|consen 681 IGSLRKLADNSVQADVLNILTEKIEILTLDLCTQLLPVLTALLGSKTERPVNVSLDMLLKLVAVFGT 747 (825)
T ss_pred HHHHHHhhhhhHHHHHHHHHhhhhhHhhHHHHHHHHHHHHHHhcccchhhhhhHHHHHHHHHHHhhh
Confidence 3333344688999888888888877654 6899999999999997656555554 4666666654
No 252
>KOG2199|consensus
Probab=24.10 E-value=4.5e+02 Score=22.95 Aligned_cols=82 Identities=16% Similarity=0.190 Sum_probs=57.0
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCch------hhHHHHHhhcCC-CChhHHHHHHHHHHHHHhcCC-cchhhh
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR------PAFPRLKEKLED-PDSGVQSAAVNVVCELARKNP-KNYLSL 74 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~------~~~~~l~~lL~D-~d~~V~~aal~l~~~l~~~~p-~~~~~l 74 (136)
-|.|.|+|.+|+|-=.|+--+-.+...+-..+. +|...++.++.| .++-|-...-.++.+.+...- +.-.++
T Consensus 49 ~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~Dp~lsL 128 (462)
T KOG2199|consen 49 AIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKKDPSLSL 128 (462)
T ss_pred HHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccCcchhH
Confidence 367888999999988887766655555544332 488889999985 577777766667666655221 234578
Q ss_pred HHHHHHHhcc
Q psy11028 75 APVFFKLMTT 84 (136)
Q Consensus 75 vp~lv~iL~~ 84 (136)
++.+++-|+.
T Consensus 129 i~~l~~klk~ 138 (462)
T KOG2199|consen 129 ISALYKKLKE 138 (462)
T ss_pred HHHHHHHHHH
Confidence 9999988874
No 253
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=23.99 E-value=36 Score=23.87 Aligned_cols=37 Identities=14% Similarity=0.151 Sum_probs=23.2
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHh
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKE 43 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~ 43 (136)
...||+|.++.||=.|+...++ ..|+-.....+.+.+
T Consensus 52 Ll~LL~hpn~~VRl~AA~~~L~---~~p~eA~~~Le~ia~ 88 (106)
T PF09450_consen 52 LLPLLKHPNMQVRLWAAAHTLR---YAPEEARKVLEEIAS 88 (106)
T ss_dssp GGGGGGSS-HHHHHHHHHTTTT---T-HHHHHHHHHHHHH
T ss_pred HHHHHcCCChhHHHHHHHHHHH---hCHHHHHHHHHHHHH
Confidence 4678999999999988877665 445444443333333
No 254
>KOG2734|consensus
Probab=23.98 E-value=60 Score=28.62 Aligned_cols=39 Identities=26% Similarity=0.387 Sum_probs=31.9
Q ss_pred HCCCCch-----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcC
Q psy11028 29 KFPDALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67 (136)
Q Consensus 29 ~~P~~v~-----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~ 67 (136)
-.||+.+ +..+.+..+|...|.-|..|++.+++|+...+
T Consensus 113 t~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~D 156 (536)
T KOG2734|consen 113 TMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDED 156 (536)
T ss_pred cChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhc
Confidence 3455544 35788999999999999999999999997754
No 255
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=23.18 E-value=4.2e+02 Score=24.59 Aligned_cols=80 Identities=11% Similarity=0.192 Sum_probs=46.5
Q ss_pred HHHHHHhHCCCCch---h-hHHHHHhhcCCCChhHH-----HHHHHHHHHHHhcCCcchhhhHHHHHHHhccCCChhHHH
Q psy11028 22 MMYKVFLKFPDALR---P-AFPRLKEKLEDPDSGVQ-----SAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLI 92 (136)
Q Consensus 22 ~~~rl~~~~P~~v~---~-~~~~l~~lL~D~d~~V~-----~aal~l~~~l~~~~p~~~~~lvp~lv~iL~~v~~pWlqi 92 (136)
.+-.++++.|.-++ + ..+-+.+.|...+++++ .|--++...+-+.....-.+++|.+.+-|. ..+-++.+
T Consensus 579 vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln-~~d~~v~~ 657 (858)
T COG5215 579 VLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALN-CTDRFVLN 657 (858)
T ss_pred HHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhc-chhHHHHH
Confidence 34456666665444 3 45666777776666543 333333343433333333467777777774 46777777
Q ss_pred HHHHHhhhcC
Q psy11028 93 KIIKLFGALT 102 (136)
Q Consensus 93 kiLk~L~~l~ 102 (136)
-..-+.+.++
T Consensus 658 ~avglvgdla 667 (858)
T COG5215 658 SAVGLVGDLA 667 (858)
T ss_pred HHHHHHHHHH
Confidence 7777776665
No 256
>KOG4413|consensus
Probab=23.15 E-value=4.9e+02 Score=22.47 Aligned_cols=92 Identities=17% Similarity=0.351 Sum_probs=65.9
Q ss_pred CCChHHHHHHHHHHHHHHhHCCCCchh-----hHHHHHhhcCC-CChhHHHHHHHHHHHHHhcC-Ccchh---hhHHHHH
Q psy11028 10 STKPYLRKKAVLMMYKVFLKFPDALRP-----AFPRLKEKLED-PDSGVQSAAVNVVCELARKN-PKNYL---SLAPVFF 79 (136)
Q Consensus 10 ~s~~~VRKKA~l~~~rl~~~~P~~v~~-----~~~~l~~lL~D-~d~~V~~aal~l~~~l~~~~-p~~~~---~lvp~lv 79 (136)
..+..+|=+..--+.+++-.+|+.... ..+.+..-|.. +|.-|....+-+.+++.... ...|. .++..+-
T Consensus 182 kcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlic 261 (524)
T KOG4413|consen 182 KCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLIC 261 (524)
T ss_pred hhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHH
Confidence 356677777777788888889987754 34444444444 79999999999999998844 44553 5788888
Q ss_pred HHhcc-CCChhHHHHHHHHhhhc
Q psy11028 80 KLMTT-SSNNWMLIKIIKLFGAL 101 (136)
Q Consensus 80 ~iL~~-v~~pWlqikiLk~L~~l 101 (136)
+|..+ ..+||-..+-|-.+..|
T Consensus 262 nIIsGadsdPfekfralmgfgkf 284 (524)
T KOG4413|consen 262 NIISGADSDPFEKFRALMGFGKF 284 (524)
T ss_pred HHhhCCCCCcHHHHHHHHHHHHH
Confidence 88886 48999887655544433
No 257
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=23.08 E-value=5e+02 Score=22.53 Aligned_cols=122 Identities=18% Similarity=0.176 Sum_probs=77.0
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCC---c-h-hhHHHHHhhcCCC--ChhHHHHHHHHHHHHHh-cCCcc-h---
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDA---L-R-PAFPRLKEKLEDP--DSGVQSAAVNVVCELAR-KNPKN-Y--- 71 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~---v-~-~~~~~l~~lL~D~--d~~V~~aal~l~~~l~~-~~p~~-~--- 71 (136)
...+|.+++..||--|+-|+=-+---++.+ + + ...+.+..+|..+ |.+.+-.+.=.+..+|+ +||.+ |
T Consensus 162 fiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i 241 (526)
T COG5064 162 FIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI 241 (526)
T ss_pred HHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHH
Confidence 357889999999999999876543333321 1 1 2356666666554 55888888888999998 78754 3
Q ss_pred hhhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHhhh-----HHHHHHHHhccchh
Q psy11028 72 LSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKL-----IEPLTNLIHRIISL 126 (136)
Q Consensus 72 ~~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~~l-----~e~l~~iL~~~~s~ 126 (136)
.+.+|.+.+++.. -+|=..+--.=.+.++.-+..+..+.+ -.++.+.|.+.++.
T Consensus 242 sqalpiL~KLiys-~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~ 300 (526)
T COG5064 242 SQALPILAKLIYS-RDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAK 300 (526)
T ss_pred HHHHHHHHHHHhh-cCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCcccc
Confidence 3456767666654 566666666666777765433222222 23466666665543
No 258
>KOG0213|consensus
Probab=22.92 E-value=1.8e+02 Score=27.73 Aligned_cols=49 Identities=20% Similarity=0.488 Sum_probs=37.0
Q ss_pred hhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCc-----chhhhHHHHHHHhc
Q psy11028 35 RPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK-----NYLSLAPVFFKLMT 83 (136)
Q Consensus 35 ~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~-----~~~~lvp~lv~iL~ 83 (136)
.+..+++.-.|..++.-|..+++.++-.|+...|+ .|-.....|+..|+
T Consensus 882 ~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLk 935 (1172)
T KOG0213|consen 882 KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLK 935 (1172)
T ss_pred hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHH
Confidence 34567777778888999999999999999888775 35556666666666
No 259
>COG1987 FliQ Flagellar biosynthesis pathway, component FliQ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=22.85 E-value=1.6e+02 Score=19.96 Aligned_cols=42 Identities=14% Similarity=0.302 Sum_probs=28.7
Q ss_pred HHHHHHHhcCCcchhhhHHHHHHHhcc--CCChhHHHHHHHHhhh
Q psy11028 58 NVVCELARKNPKNYLSLAPVFFKLMTT--SSNNWMLIKIIKLFGA 100 (136)
Q Consensus 58 ~l~~~l~~~~p~~~~~lvp~lv~iL~~--v~~pWlqikiLk~L~~ 100 (136)
+.+++.-+-| |+-..++|+++.++-. .-.||.--+++.+...
T Consensus 36 sifQA~TQIq-EqTLsFiPKIiai~~~l~~~gpWm~~~l~dft~~ 79 (89)
T COG1987 36 SIFQAATQIQ-EQTLSFIPKIIAVFLVLILLGPWMLNQLLDFTVT 79 (89)
T ss_pred HHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3333333333 4556789999987764 4789999999987653
No 260
>KOG2137|consensus
Probab=22.69 E-value=2.9e+02 Score=25.55 Aligned_cols=89 Identities=17% Similarity=0.284 Sum_probs=61.4
Q ss_pred CchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch--hhhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHh
Q psy11028 33 ALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY--LSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGK 110 (136)
Q Consensus 33 ~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~--~~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~ 110 (136)
..+...+-|...++|.+..+...++..+..+++.-+-.+ ..+.|.+.+.-....+.-.++.+|-.|+.+. +.-..-
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~--q~lD~~ 463 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI--QRLDKA 463 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH--HHHHHH
Confidence 344566777777888999999888888888777544333 3467887777666678888888888888776 222234
Q ss_pred hhHHHHHHHHhcc
Q psy11028 111 KLIEPLTNLIHRI 123 (136)
Q Consensus 111 ~l~e~l~~iL~~~ 123 (136)
.+.|.+..+++..
T Consensus 464 ~v~d~~lpi~~~~ 476 (700)
T KOG2137|consen 464 AVLDELLPILKCI 476 (700)
T ss_pred HhHHHHHHHHHHh
Confidence 5666666666554
No 261
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=22.37 E-value=43 Score=17.04 Aligned_cols=12 Identities=17% Similarity=0.329 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHH
Q psy11028 15 LRKKAVLMMYKV 26 (136)
Q Consensus 15 VRKKA~l~~~rl 26 (136)
||..|+.++-++
T Consensus 1 VR~~Aa~aLg~i 12 (27)
T PF03130_consen 1 VRRAAARALGQI 12 (27)
T ss_dssp HHHHHHHHHGGG
T ss_pred CHHHHHHHHHHc
Confidence 566666665543
No 262
>KOG1087|consensus
Probab=22.00 E-value=4.4e+02 Score=23.17 Aligned_cols=68 Identities=18% Similarity=0.180 Sum_probs=50.1
Q ss_pred chhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh------hhHHHHHHHhccC-CChhHHHHHHHHhhhc
Q psy11028 34 LRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL------SLAPVFFKLMTTS-SNNWMLIKIIKLFGAL 101 (136)
Q Consensus 34 v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~------~lvp~lv~iL~~v-~~pWlqikiLk~L~~l 101 (136)
..+.+..|++++.++++-|..=|++++..++++=.+.|- .+++.+|.+.+.- ++-=.|-|||.++..-
T Consensus 36 ~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W 110 (470)
T KOG1087|consen 36 PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTW 110 (470)
T ss_pred cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHH
Confidence 345677799999999999999999966555554454443 5788888888876 6667788899888643
No 263
>PLN00122 serine/threonine protein phosphatase 2A; Provisional
Probab=21.79 E-value=1.7e+02 Score=22.09 Aligned_cols=44 Identities=18% Similarity=0.272 Sum_probs=27.4
Q ss_pred hHHHHHhhcCC-CChhHHHHHHHHHHHHHhcCCcchhhhHHHHHH
Q psy11028 37 AFPRLKEKLED-PDSGVQSAAVNVVCELARKNPKNYLSLAPVFFK 80 (136)
Q Consensus 37 ~~~~l~~lL~D-~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~ 80 (136)
+++.|.+-... =|..|-.-+.+++.-+.+.||+.|.++...+-.
T Consensus 96 ifpaL~~ns~~HWN~~V~~lt~nvlK~f~emD~~LF~ec~~~~ke 140 (170)
T PLN00122 96 IFPALEKNTRGHWNQAVHGLTLNVRKMFSEMDPELFEECLRKFEE 140 (170)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 34444443332 377777777777777777777777766655443
No 264
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=21.74 E-value=5.4e+02 Score=22.38 Aligned_cols=82 Identities=16% Similarity=0.269 Sum_probs=53.2
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHCCC--CchhhHHHHHhhcCCCC-hhHHHHHHHHHHHHH--hcCCcchhhhHHH
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPD--ALRPAFPRLKEKLEDPD-SGVQSAAVNVVCELA--RKNPKNYLSLAPV 77 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~--~v~~~~~~l~~lL~D~d-~~V~~aal~l~~~l~--~~~p~~~~~lvp~ 77 (136)
.+...|.++++.||||..-.+.++....-. .+.-=++.|.+...+.+ .+.+-.-.-++.+.. +-+++.-.+++|.
T Consensus 27 plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~Rl~~~e~~~llP~ 106 (501)
T PF13001_consen 27 PLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFDRLDDEERRELLPS 106 (501)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhhcCCHHHHHHHHHH
Confidence 456667899999999999988888765322 22323566666666665 444444443444443 3445666788999
Q ss_pred HHHHhcc
Q psy11028 78 FFKLMTT 84 (136)
Q Consensus 78 lv~iL~~ 84 (136)
+.+-+.+
T Consensus 107 ll~~is~ 113 (501)
T PF13001_consen 107 LLKGISK 113 (501)
T ss_pred HHHhhcc
Confidence 8887764
No 265
>PF07201 HrpJ: HrpJ-like domain; InterPro: IPR010812 This entry represents a conserved region approximately 200 residues long within a number of bacterial hypersensitivity response secretion protein HrpJ and similar proteins. HrpJ forms part of a type III secretion system through which, in phytopathogenic bacterial species, virulence factors are thought to be delivered to plant cells []. This entry also includes the InvE invasion protein from Salmonella. This protein is involved in host parasite interactions and mutations in the InvE gene render Salmonella typhimurium non-invasive []. InvE S. typhimurium mutants fail to elicit a rapid Ca2+ increase in cultured cells, an important event in the infection procedure and internalisation of S. typhimurium into epithelial cells []. This family includes bacterial SepL and SsaL proteins. SepL plays an essential role in the infection process of enterohemorrhagic Escherichia coli and is thought to be responsible for the secretion of EspA, EspD, and EspB []. SsaL of Salmonella typhimurium is thought to be a component of the type III secretion system []. ; GO: 0009405 pathogenesis, 0046903 secretion, 0019867 outer membrane; PDB: 1XL3_B 1XKP_A 2VIX_B 2VJ4_B 2VJ5_B.
Probab=21.64 E-value=1.7e+02 Score=21.16 Aligned_cols=43 Identities=19% Similarity=0.087 Sum_probs=31.1
Q ss_pred CCChhHHHHHHHHhhhc-CCCChHHHhhhHHHHHHHHhccchhhh
Q psy11028 85 SSNNWMLIKIIKLFGAL-TPLEPRLGKKLIEPLTNLIHRIISLSC 128 (136)
Q Consensus 85 v~~pWlqikiLk~L~~l-~~~e~~~~~~l~e~l~~iL~~~~s~sv 128 (136)
.+||+-|+-.|+.+..= .+.++...+.+.+.+.++.+ ..-..+
T Consensus 74 ~~D~s~~~l~L~~ll~~~~~~~~~~~~~l~~aL~~L~~-~~g~~i 117 (166)
T PF07201_consen 74 FPDPSDQDLALRALLQQQRPLSPELRKALEQALAELEA-EEGREI 117 (166)
T ss_dssp -SSHHHHHHHHHHHCCCSSCCGCCHHHHHHHHHHHHHC-CCHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHh-hchHHH
Confidence 38999999999776666 56667778888888888887 333333
No 266
>PF03635 Vps35: Vacuolar protein sorting-associated protein 35 ; InterPro: IPR005378 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35.Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains [].; PDB: 2R17_C.
Probab=21.59 E-value=1.2e+02 Score=28.16 Aligned_cols=92 Identities=12% Similarity=0.148 Sum_probs=25.0
Q ss_pred hcCCCChHHHHHHHHHHHHHHhHCC------CCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch---hhhHHH
Q psy11028 7 YLTSTKPYLRKKAVLMMYKVFLKFP------DALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY---LSLAPV 77 (136)
Q Consensus 7 lL~~s~~~VRKKA~l~~~rl~~~~P------~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~---~~lvp~ 77 (136)
+++.-+.--||..+..+..-+.... |-++.+++.+.-++.|.+-..-.+... ..+++.| ...+.+
T Consensus 421 Ll~~L~~~~rk~IA~~Ii~~iL~~~~~Ist~e~v~~ll~li~pLi~d~~d~~~~~~~~------~~~~eef~eeQ~~var 494 (762)
T PF03635_consen 421 LLSLLPYETRKQIALEIIDNILENNTIISTPEEVDNLLELISPLIKDQDDQPSSEPDL------KEDSEEFAEEQELVAR 494 (762)
T ss_dssp ----------------------------------------------------------------------TCCCHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHhhCCCCCCCccccc------cCchHHHHHHHHHHHH
Confidence 4444444457887777776665543 334445666777776654332222111 2222333 357888
Q ss_pred HHHHhccCCChhHHHHHHHHhh-hcCCCC
Q psy11028 78 FFKLMTTSSNNWMLIKIIKLFG-ALTPLE 105 (136)
Q Consensus 78 lv~iL~~v~~pWlqikiLk~L~-~l~~~e 105 (136)
+++++.+ .||-.|.++|..++ .++.+.
T Consensus 495 liHLi~~-~D~d~~~~iL~~~rk~~~~Gg 522 (762)
T PF03635_consen 495 LIHLIRS-DDPDQQFEILNIARKHFGNGG 522 (762)
T ss_dssp HHHHCTT-SSHHHHHHHHHHHHHHHCTT-
T ss_pred HHHHhcC-CCHHHHHHHHHHHHHHHHhCC
Confidence 8888874 68888888888887 556555
No 267
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=21.45 E-value=4.5e+02 Score=21.35 Aligned_cols=118 Identities=16% Similarity=0.201 Sum_probs=70.9
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHC--CCCchh----hHHHHHhhcCCC--ChhHHHHHHHHHHHHH----hcCCcc
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKF--PDALRP----AFPRLKEKLEDP--DSGVQSAAVNVVCELA----RKNPKN 70 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~--P~~v~~----~~~~l~~lL~D~--d~~V~~aal~l~~~l~----~~~p~~ 70 (136)
+....+.+.+.-.|.-|.-.+.++++.. |+.+.. +.+.+.+.+.-. ....+++-+..+..+. ....+.
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 4455677888999999999999999664 344433 345555555432 2333332222222222 234568
Q ss_pred hhhhHHHHHHHhccCC-ChhHHHHHHHHh---hhcCCCChHHHhhhHHHHHHHH
Q psy11028 71 YLSLAPVFFKLMTTSS-NNWMLIKIIKLF---GALTPLEPRLGKKLIEPLTNLI 120 (136)
Q Consensus 71 ~~~lvp~lv~iL~~v~-~pWlqikiLk~L---~~l~~~e~~~~~~l~e~l~~iL 120 (136)
|..+.|.|.++++... .+=.-..++..| ..++..++.....+.+.+..+.
T Consensus 127 ~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if 180 (309)
T PF05004_consen 127 FEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIF 180 (309)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Confidence 8999999999998643 333334455444 4556677777775666666554
No 268
>KOG2757|consensus
Probab=21.34 E-value=1.9e+02 Score=24.85 Aligned_cols=78 Identities=10% Similarity=0.178 Sum_probs=59.5
Q ss_pred hhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCC-CChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhc
Q psy11028 6 IYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLED-PDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMT 83 (136)
Q Consensus 6 klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D-~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~ 83 (136)
.+.+|.+..+||---.|+-++....-+.+...++++.+.+.. .+.+=+..---++..+.+..|....-+.+.|.+.++
T Consensus 173 ~~~~~e~e~~~~~l~~~Fs~lM~~~~~~i~~~v~~L~~r~~~~~~~~~~~d~~eli~~l~kqfP~DIGvfs~~FlN~~~ 251 (411)
T KOG2757|consen 173 DLTSHEDEDSKKVLKLCFSRLMKAEENVIKIQVSKLVKRLQNELNGFNLTDLEELILKLNKQFPGDIGVFSPFFLNYVR 251 (411)
T ss_pred hhccchhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhccccccCcccHHHHHHHHHhhCCCcceeeeHhhhhhee
Confidence 344556678888888999999998888888888888877743 333344444588889999999888888888888766
No 269
>KOG0839|consensus
Probab=21.33 E-value=5.5e+02 Score=25.66 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=21.4
Q ss_pred ChHHHHHHHHHHHHHHhHCCCCchh
Q psy11028 12 KPYLRKKAVLMMYKVFLKFPDALRP 36 (136)
Q Consensus 12 ~~~VRKKA~l~~~rl~~~~P~~v~~ 36 (136)
++||+.--.+-+.++|++.|..++.
T Consensus 1083 k~~vew~i~~~~vkfyk~fpkf~de 1107 (1477)
T KOG0839|consen 1083 KVYVEWFISSKVVKFYKTFPKFADE 1107 (1477)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 5788898899999999998887776
No 270
>KOG1991|consensus
Probab=21.14 E-value=4.8e+02 Score=25.28 Aligned_cols=62 Identities=11% Similarity=0.219 Sum_probs=46.2
Q ss_pred hhcCCCChHHHHHHHHHHHHHH-hHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcC
Q psy11028 6 IYLTSTKPYLRKKAVLMMYKVF-LKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67 (136)
Q Consensus 6 klL~~s~~~VRKKA~l~~~rl~-~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~ 67 (136)
..+-++...+|=-=-.|+..++ --+|+--+.+.+++...|...|-..+.+|+-++.++++.+
T Consensus 96 ~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~y 158 (1010)
T KOG1991|consen 96 ETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTY 158 (1010)
T ss_pred HHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHH
Confidence 3444555555544444443444 4478888889999999999999999999999999998854
No 271
>PF11867 DUF3387: Domain of unknown function (DUF3387); InterPro: IPR021810 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is typically between 255 to 340 amino acids in length. This domain is found associated with PF04851 from PFAM, PF04313 from PFAM.
Probab=20.83 E-value=3.6e+02 Score=22.07 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=40.3
Q ss_pred hhHHHHHHHhccCCChhHHHHHHHHh-----hhcCCCChHHHhhhHHHHHHHHhccchhhh
Q psy11028 73 SLAPVFFKLMTTSSNNWMLIKIIKLF-----GALTPLEPRLGKKLIEPLTNLIHRIISLSC 128 (136)
Q Consensus 73 ~lvp~lv~iL~~v~~pWlqikiLk~L-----~~l~~~e~~~~~~l~e~l~~iL~~~~s~sv 128 (136)
-+-+.|..-+++.+.|=+.+..|+=+ ......+|.-.++++|.+.++|++-++.++
T Consensus 155 ild~eFl~~v~~~~~k~~~~e~L~~~l~~~I~~~~~~N~~~~~~fsErLe~iI~~Y~~~~i 215 (335)
T PF11867_consen 155 ILDDEFLEEVKKMKSKNLKAELLEKLLRDEIKVRMKENPVRYKKFSERLEEIIEKYNNRSI 215 (335)
T ss_pred hcCHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHcccc
Confidence 34566667777778888888877644 334456677778999999999987766543
No 272
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=20.73 E-value=6.3e+02 Score=24.53 Aligned_cols=112 Identities=14% Similarity=0.162 Sum_probs=61.2
Q ss_pred CCCChHHHHHHHHHHHHHHhHCCCC--chhhHHHHHhhcC-C---CChhHHHHHHHHHHHHHhcC-Ccchhh--hHHHHH
Q psy11028 9 TSTKPYLRKKAVLMMYKVFLKFPDA--LRPAFPRLKEKLE-D---PDSGVQSAAVNVVCELARKN-PKNYLS--LAPVFF 79 (136)
Q Consensus 9 ~~s~~~VRKKA~l~~~rl~~~~P~~--v~~~~~~l~~lL~-D---~d~~V~~aal~l~~~l~~~~-p~~~~~--lvp~lv 79 (136)
.+++||=-|+|++.+.|++....=- +..++++..+.+. + .+..+... +.+..... ...+.+ +-..++
T Consensus 788 GSkDPfALRRaAlGIirIl~e~~l~l~L~~ll~~a~~~~~~~~~~~~~~~~~~----l~~Fi~~Rl~~~l~d~G~~~dvI 863 (1000)
T PRK14908 788 SSSDPYALRRQALGVLTLLRATPASLDLEDLLARLARHFPSTTVWVKEAVLDE----VLEFVWGRLKTQLLDLGFDKDEI 863 (1000)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccccccccHHHHHH----HHHHHHHHHHHHHHhcCCCHHHH
Confidence 5789999999999999999765422 2335555555442 1 01112211 22222211 111211 222333
Q ss_pred H-Hhc-cCCChhHHHHHHHHhhhcCC-CChHHHhhhHHHHHHHHhccc
Q psy11028 80 K-LMT-TSSNNWMLIKIIKLFGALTP-LEPRLGKKLIEPLTNLIHRII 124 (136)
Q Consensus 80 ~-iL~-~v~~pWlqikiLk~L~~l~~-~e~~~~~~l~e~l~~iL~~~~ 124 (136)
+ +|. +..+||-..+-++.|+.+.. ++-+.-.....++.+|+.+..
T Consensus 864 ~AVl~~~~~~~~~~~~r~~aL~~f~~~~~~~~l~~a~kRv~NIl~k~~ 911 (1000)
T PRK14908 864 AAVLPDACKNPAEADKTAQALQELKSTEIFAEIAAALNRLKRILASLS 911 (1000)
T ss_pred HHHHccCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHhhcC
Confidence 3 222 23578888888888887764 333444556777778876654
No 273
>KOG1788|consensus
Probab=20.45 E-value=2e+02 Score=28.86 Aligned_cols=55 Identities=18% Similarity=0.318 Sum_probs=40.7
Q ss_pred CCChhHHHHHHHHHHHHHhcCCcchhhh-----HHHHHHHhccCCChhHHHHHHHHhhhcC
Q psy11028 47 DPDSGVQSAAVNVVCELARKNPKNYLSL-----APVFFKLMTTSSNNWMLIKIIKLFGALT 102 (136)
Q Consensus 47 D~d~~V~~aal~l~~~l~~~~p~~~~~l-----vp~lv~iL~~v~~pWlqikiLk~L~~l~ 102 (136)
..+.+...-+++-+..|-..+|+.|+-+ +|-++.-+.+-|. =+|+|||+++.+-.
T Consensus 478 aenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPs-slqvkiLkilEyAV 537 (2799)
T KOG1788|consen 478 AENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPS-SLQVKILKILEYAV 537 (2799)
T ss_pred hcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCCh-HHHHHHHHHHHHHH
Confidence 3566667777888888888888877643 6777777777543 58999999997643
No 274
>KOG2759|consensus
Probab=20.21 E-value=1.8e+02 Score=25.38 Aligned_cols=55 Identities=18% Similarity=0.177 Sum_probs=37.9
Q ss_pred CChHHHHHHHHHHHHHHhHCCCCc---hh--hHHHHHhhcCCCChhHHHHHHHHHHHHHh
Q psy11028 11 TKPYLRKKAVLMMYKVFLKFPDAL---RP--AFPRLKEKLEDPDSGVQSAAVNVVCELAR 65 (136)
Q Consensus 11 s~~~VRKKA~l~~~rl~~~~P~~v---~~--~~~~l~~lL~D~d~~V~~aal~l~~~l~~ 65 (136)
.+|.+--=||.=+-.++|.+|+.- +. ..+++-++|+.+||-|=--|+-.++.+.-
T Consensus 379 ~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 379 NDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred CCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 447777777777777778888643 32 46777788888888887777766666543
No 275
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=20.14 E-value=3.5e+02 Score=22.81 Aligned_cols=91 Identities=23% Similarity=0.379 Sum_probs=55.7
Q ss_pred ChHHHHHHHHHHHHHHhH----CCC---Cchh------hHHHHHhhcCCC---ChhHHHHHHHHHHHHHhcCCcchhh--
Q psy11028 12 KPYLRKKAVLMMYKVFLK----FPD---ALRP------AFPRLKEKLEDP---DSGVQSAAVNVVCELARKNPKNYLS-- 73 (136)
Q Consensus 12 ~~~VRKKA~l~~~rl~~~----~P~---~v~~------~~~~l~~lL~D~---d~~V~~aal~l~~~l~~~~p~~~~~-- 73 (136)
-+|-|+...-.++|++.+ .+. .+.+ +...++..+.+. -++|.+.|++++.++..++|+.|..
T Consensus 69 i~~~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~ 148 (379)
T PF06025_consen 69 ISYQRQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQ 148 (379)
T ss_pred cCHHHHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHH
Confidence 456677777777766643 222 2222 234456666543 7899999999999999999997753
Q ss_pred ---hHHHHHHHhc--cC-CChhHHHHHHHHhhhcC
Q psy11028 74 ---LAPVFFKLMT--TS-SNNWMLIKIIKLFGALT 102 (136)
Q Consensus 74 ---lvp~lv~iL~--~v-~~pWlqikiLk~L~~l~ 102 (136)
+.+.+.+-+. ++ ++.=+..-|=..|..++
T Consensus 149 e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~Aic 183 (379)
T PF06025_consen 149 EAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAIC 183 (379)
T ss_pred HcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHh
Confidence 4666666554 22 33334444444444444
No 276
>KOG0211|consensus
Probab=20.03 E-value=3.3e+02 Score=25.45 Aligned_cols=80 Identities=16% Similarity=0.199 Sum_probs=55.1
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCch--hhHHHHHhhcCCCChhHHHHHHHHHHHHHhc--CC-cchhhhHHHH
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR--PAFPRLKEKLEDPDSGVQSAAVNVVCELARK--NP-KNYLSLAPVF 78 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~--~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~--~p-~~~~~lvp~l 78 (136)
+..+-++..|.||+.++-=+..+-...+.... ...+-+.++..|..-+|..+|+..+..+... .+ +....+-+.+
T Consensus 242 ~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l 321 (759)
T KOG0211|consen 242 VQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESL 321 (759)
T ss_pred HHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHH
Confidence 34556788899999888777666665554332 2567788888888899999999888888763 23 3344455555
Q ss_pred HHHhc
Q psy11028 79 FKLMT 83 (136)
Q Consensus 79 v~iL~ 83 (136)
++...
T Consensus 322 ~~~~~ 326 (759)
T KOG0211|consen 322 VQAVE 326 (759)
T ss_pred HHHhc
Confidence 55444
Done!