Query psy11028
Match_columns 136
No_of_seqs 110 out of 579
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 16:18:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11028.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11028hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_A Adaptor protein complex 99.9 1.1E-23 3.6E-28 182.4 13.1 122 1-122 148-290 (621)
2 3tjz_B Coatomer subunit gamma; 99.9 4.7E-23 1.6E-27 169.2 6.6 131 3-135 143-274 (355)
3 1w63_A Adapter-related protein 99.9 5.6E-22 1.9E-26 170.8 9.2 132 2-133 145-299 (618)
4 2vgl_B AP-2 complex subunit be 99.8 8.9E-20 3E-24 155.9 11.3 132 2-134 124-262 (591)
5 4db6_A Armadillo repeat protei 98.4 2.9E-06 9.8E-11 61.7 11.2 127 4-131 17-158 (210)
6 4hxt_A De novo protein OR329; 98.3 5.4E-06 1.8E-10 61.1 10.7 128 3-131 90-232 (252)
7 4hxt_A De novo protein OR329; 98.3 7.2E-06 2.5E-10 60.4 11.2 127 3-130 48-189 (252)
8 4db6_A Armadillo repeat protei 98.3 5.7E-06 2E-10 60.1 10.4 127 3-130 58-199 (210)
9 4db8_A Armadillo-repeat protei 98.3 5.4E-06 1.8E-10 61.7 9.2 126 3-129 100-240 (252)
10 2vgl_B AP-2 complex subunit be 98.2 4.3E-06 1.5E-10 71.1 8.0 127 3-132 53-181 (591)
11 4db8_A Armadillo-repeat protei 98.1 1.5E-05 5.2E-10 59.2 9.5 129 2-131 15-158 (252)
12 1wa5_B Importin alpha subunit; 98.0 0.00014 4.7E-09 60.3 13.0 127 3-130 219-360 (530)
13 3ltj_A Alpharep-4; protein eng 97.9 0.00017 5.8E-09 52.1 11.6 86 4-102 19-104 (201)
14 1oyz_A Hypothetical protein YI 97.9 0.00012 4.3E-09 55.5 11.2 98 4-103 59-157 (280)
15 3tjz_B Coatomer subunit gamma; 97.9 7.1E-05 2.4E-09 61.1 9.9 107 5-114 110-216 (355)
16 3ltm_A Alpha-REP4; protein eng 97.9 0.00023 8E-09 51.7 11.4 27 75-102 145-171 (211)
17 3ltm_A Alpha-REP4; protein eng 97.9 0.00031 1.1E-08 51.0 12.0 108 3-129 54-161 (211)
18 2jdq_A Importin alpha-1 subuni 97.8 0.00021 7.1E-09 56.9 11.5 120 2-122 23-160 (450)
19 1oyz_A Hypothetical protein YI 97.8 0.00022 7.6E-09 54.0 11.2 108 7-125 99-206 (280)
20 3ltj_A Alpharep-4; protein eng 97.8 0.00032 1.1E-08 50.6 11.5 54 4-63 50-103 (201)
21 1w63_A Adapter-related protein 97.8 1.3E-05 4.5E-10 68.7 4.6 123 3-128 74-196 (618)
22 2qk2_A LP04448P; mini spindles 97.8 0.0005 1.7E-08 51.4 12.3 121 2-123 18-164 (242)
23 2jdq_A Importin alpha-1 subuni 97.8 0.00027 9.2E-09 56.2 11.1 124 4-128 197-335 (450)
24 2qk2_A LP04448P; mini spindles 97.8 0.0007 2.4E-08 50.6 12.6 121 4-127 61-192 (242)
25 2vgl_A Adaptor protein complex 97.8 3.2E-05 1.1E-09 66.7 5.8 129 2-132 77-208 (621)
26 4b8j_A Importin subunit alpha- 97.8 0.00054 1.8E-08 56.4 13.0 123 4-127 207-345 (528)
27 4b8j_A Importin subunit alpha- 97.7 0.00053 1.8E-08 56.5 12.4 128 4-132 165-307 (528)
28 1wa5_B Importin alpha subunit; 97.7 0.00047 1.6E-08 57.0 11.5 125 4-129 262-401 (530)
29 1xqr_A HSPBP1 protein; armadil 97.7 0.00017 5.9E-09 57.1 8.4 102 4-106 129-241 (296)
30 1xqr_A HSPBP1 protein; armadil 97.7 0.00023 7.8E-09 56.3 9.1 123 4-127 86-225 (296)
31 3ul1_B Importin subunit alpha- 97.4 0.0014 4.9E-08 54.5 10.8 122 2-124 60-198 (510)
32 1jdh_A Beta-catenin; beta-cate 97.3 0.0018 6.1E-08 52.6 10.7 122 4-125 232-369 (529)
33 4fdd_A Transportin-1; heat rep 97.3 0.002 6.7E-08 56.3 11.5 100 4-104 95-204 (852)
34 1xm9_A Plakophilin 1; armadill 97.3 0.0017 5.8E-08 53.4 9.9 119 2-120 5-136 (457)
35 2qk1_A Protein STU2; STU2P, XM 97.2 0.0051 1.7E-07 47.0 11.0 82 3-84 20-115 (249)
36 1te4_A Conserved protein MTH18 97.2 0.0014 4.8E-08 44.7 7.0 106 3-128 16-121 (131)
37 4fdd_A Transportin-1; heat rep 97.2 0.002 6.9E-08 56.2 9.7 128 2-130 131-275 (852)
38 1b3u_A Protein (protein phosph 97.1 0.0036 1.2E-07 51.2 10.4 120 5-125 248-377 (588)
39 3tpo_A Importin subunit alpha- 97.1 0.0026 9E-08 53.0 9.7 124 4-128 256-394 (529)
40 1b3u_A Protein (protein phosph 97.1 0.003 1E-07 51.7 9.3 122 4-126 446-573 (588)
41 1u6g_C TIP120 protein, CAND1; 97.1 0.0036 1.2E-07 56.7 10.7 121 4-125 53-189 (1230)
42 3b2a_A TON_1937, putative unch 97.1 0.0055 1.9E-07 48.0 10.2 116 4-122 38-161 (265)
43 2qk1_A Protein STU2; STU2P, XM 97.0 0.0054 1.9E-07 46.9 9.9 124 4-128 65-208 (249)
44 2z6h_A Catenin beta-1, beta-ca 97.0 0.0097 3.3E-07 50.5 12.0 122 4-125 229-366 (644)
45 1u6g_C TIP120 protein, CAND1; 97.0 0.012 4E-07 53.4 13.0 119 4-123 91-225 (1230)
46 1jdh_A Beta-catenin; beta-cate 96.9 0.014 4.9E-07 47.2 12.2 123 3-125 105-241 (529)
47 2z6h_A Catenin beta-1, beta-ca 96.9 0.017 5.7E-07 49.1 12.6 122 3-125 102-238 (644)
48 2z6g_A B-catenin; FULL-length, 96.8 0.012 4.2E-07 51.6 11.1 122 4-125 365-502 (780)
49 3ul1_B Importin subunit alpha- 96.7 0.004 1.4E-07 51.8 7.5 123 4-127 237-374 (510)
50 1te4_A Conserved protein MTH18 96.7 0.00047 1.6E-08 47.2 1.5 85 3-100 46-130 (131)
51 3tt9_A Plakophilin-2; cell adh 96.7 0.014 4.8E-07 44.7 9.9 104 2-105 11-126 (233)
52 3tpo_A Importin subunit alpha- 96.7 0.021 7.3E-07 47.4 11.5 122 2-124 79-217 (529)
53 2bpt_A Importin beta-1 subunit 96.4 0.026 8.8E-07 48.4 10.8 100 3-103 415-529 (861)
54 1ibr_B P95, importin beta-1 su 96.4 0.0066 2.2E-07 48.1 6.5 112 11-123 49-184 (462)
55 2z6g_A B-catenin; FULL-length, 96.3 0.0091 3.1E-07 52.4 7.4 127 2-130 118-253 (780)
56 1qgr_A Protein (importin beta 96.3 0.037 1.3E-06 47.5 11.0 98 3-101 412-535 (876)
57 3b2a_A TON_1937, putative unch 96.3 0.037 1.2E-06 43.4 9.9 94 36-130 33-134 (265)
58 2bpt_A Importin beta-1 subunit 96.0 0.13 4.3E-06 44.1 12.9 98 4-101 100-208 (861)
59 2db0_A 253AA long hypothetical 95.9 0.036 1.2E-06 42.4 8.1 102 11-113 119-220 (253)
60 3l6x_A Catenin delta-1; cateni 95.9 0.055 1.9E-06 46.7 9.9 119 2-120 51-183 (584)
61 1xm9_A Plakophilin 1; armadill 95.7 0.096 3.3E-06 42.9 10.3 119 3-122 48-196 (457)
62 3nmw_A APC variant protein; AR 95.6 0.12 4E-06 41.5 10.6 124 5-129 176-323 (354)
63 1qgr_A Protein (importin beta 95.6 0.042 1.4E-06 47.2 8.3 97 4-102 371-478 (876)
64 1wa5_C Importin alpha RE-expor 95.6 0.081 2.8E-06 47.0 10.3 61 6-66 462-526 (960)
65 3u0r_A Apoptosis inhibitor 5; 95.5 0.046 1.6E-06 46.5 8.0 91 10-121 39-129 (507)
66 1ibr_B P95, importin beta-1 su 95.5 0.063 2.1E-06 42.3 8.2 92 11-103 340-437 (462)
67 3nmz_A APC variant protein; pr 95.4 0.17 5.7E-06 42.2 10.9 123 5-128 292-438 (458)
68 3grl_A General vesicular trans 95.3 0.1 3.6E-06 45.7 9.7 81 4-84 127-219 (651)
69 3now_A UNC-45 protein, SD10334 95.2 0.21 7E-06 44.7 11.5 122 4-126 500-638 (810)
70 3tt9_A Plakophilin-2; cell adh 94.8 0.18 6.2E-06 38.4 8.8 87 36-123 8-106 (233)
71 3nmz_A APC variant protein; pr 94.6 0.059 2E-06 45.0 6.1 71 3-73 383-458 (458)
72 3opb_A SWI5-dependent HO expre 94.6 0.44 1.5E-05 42.6 11.9 121 3-124 610-760 (778)
73 2db0_A 253AA long hypothetical 94.5 0.39 1.3E-05 36.7 9.9 80 3-82 36-116 (253)
74 4ffb_C Protein STU2; tubulin f 94.5 0.52 1.8E-05 35.7 10.7 63 4-67 108-170 (278)
75 3now_A UNC-45 protein, SD10334 94.5 0.13 4.5E-06 46.0 8.3 119 3-123 627-762 (810)
76 4ffb_C Protein STU2; tubulin f 93.9 0.61 2.1E-05 35.3 10.2 64 4-67 14-86 (278)
77 3nmw_A APC variant protein; AR 93.8 0.11 3.8E-06 41.7 6.0 71 3-73 267-342 (354)
78 3l6x_A Catenin delta-1; cateni 93.7 0.44 1.5E-05 41.0 9.9 119 4-122 95-246 (584)
79 3u0r_A Apoptosis inhibitor 5; 93.7 0.83 2.8E-05 38.9 11.2 116 4-125 70-191 (507)
80 2x19_B Importin-13; nuclear tr 93.3 0.85 2.9E-05 40.0 11.1 92 9-102 499-598 (963)
81 1x5b_A Signal transducing adap 93.1 0.92 3.1E-05 32.7 9.3 83 20-102 36-124 (163)
82 3zyq_A Hepatocyte growth facto 92.7 1.3 4.3E-05 33.5 10.1 99 20-120 29-136 (226)
83 4gmo_A Putative uncharacterize 91.8 0.24 8.1E-06 42.9 5.6 79 4-83 39-129 (684)
84 1wa5_C Importin alpha RE-expor 91.8 1.1 3.6E-05 39.8 9.9 64 5-68 91-155 (960)
85 3m1i_C Exportin-1; heat repeat 91.7 0.31 1.1E-05 43.7 6.4 90 11-101 512-616 (1049)
86 4hat_C Exportin-1; heat repeat 91.5 0.26 9E-06 44.9 5.8 91 11-102 512-617 (1023)
87 2of3_A ZYG-9; multifunctional 91.5 0.5 1.7E-05 36.9 6.6 59 6-66 139-197 (266)
88 1mhq_A ADP-ribosylation factor 91.4 2.3 8E-05 30.0 9.6 88 20-107 22-123 (148)
89 3dad_A FH1/FH2 domain-containi 91.3 0.91 3.1E-05 36.8 8.1 98 4-102 123-230 (339)
90 2x1g_F Cadmus; transport prote 91.2 1 3.5E-05 39.7 9.1 89 10-101 517-613 (971)
91 3ldz_A STAM-1, signal transduc 91.1 2.8 9.7E-05 29.2 9.7 86 21-107 27-121 (140)
92 3a6p_A Exportin-5; exportin-5, 91.0 1.2 3.9E-05 41.1 9.5 94 9-102 542-656 (1204)
93 2x19_B Importin-13; nuclear tr 91.0 2 6.9E-05 37.6 10.7 89 11-99 115-227 (963)
94 2of3_A ZYG-9; multifunctional 90.5 3.5 0.00012 32.0 10.6 121 2-125 49-200 (266)
95 3ibv_A Exportin-T; karyopherin 90.1 0.65 2.2E-05 42.0 7.0 74 10-83 506-584 (980)
96 3o2t_A Symplekin; heat repeat, 89.5 4.1 0.00014 33.4 10.7 55 29-83 56-110 (386)
97 3gs3_A Symplekin, LD45768P; he 89.4 1.4 5E-05 34.0 7.6 120 3-123 57-224 (257)
98 3g2s_A C-terminal fragment of 89.4 4.3 0.00015 28.7 10.6 88 20-107 32-133 (149)
99 3l9t_A Putative uncharacterize 88.7 0.43 1.5E-05 36.9 4.1 68 4-72 144-214 (240)
100 1dvp_A HRS, hepatocyte growth 87.4 3.8 0.00013 30.5 8.6 83 20-102 26-114 (220)
101 3o2t_A Symplekin; heat repeat, 86.7 2.3 7.8E-05 34.9 7.5 121 3-124 67-238 (386)
102 3gs3_A Symplekin, LD45768P; he 86.6 6.8 0.00023 30.1 9.8 71 27-98 44-114 (257)
103 1juq_A ADP-ribosylation factor 84.8 7.2 0.00025 28.1 8.7 83 20-102 34-127 (171)
104 3grl_A General vesicular trans 84.3 3.9 0.00013 35.8 8.2 87 37-124 123-221 (651)
105 2iw3_A Elongation factor 3A; a 83.0 4.7 0.00016 36.9 8.4 116 17-133 70-197 (986)
106 3m1i_C Exportin-1; heat repeat 82.4 2.8 9.4E-05 37.6 6.7 92 9-102 59-165 (1049)
107 1elk_A Target of MYB1; superhe 82.1 11 0.00038 26.6 9.0 82 21-102 38-129 (157)
108 4gmo_A Putative uncharacterize 78.8 5.5 0.00019 34.3 7.1 109 4-112 81-223 (684)
109 4ady_A RPN2, 26S proteasome re 78.6 6.4 0.00022 36.0 7.7 106 9-121 588-698 (963)
110 4ady_A RPN2, 26S proteasome re 78.1 13 0.00045 34.0 9.6 111 9-128 518-664 (963)
111 3gjx_A Exportin-1; transport, 77.5 5.6 0.00019 36.6 7.1 79 25-103 555-644 (1073)
112 2b6c_A Hypothetical protein EF 76.8 2.6 9E-05 31.3 4.0 85 4-96 129-213 (220)
113 3a6p_A Exportin-5; exportin-5, 74.0 11 0.00039 34.5 8.2 91 9-101 57-160 (1204)
114 3qml_C Protein SLS1, nucleotid 71.4 7.5 0.00026 31.1 5.6 91 9-101 80-187 (315)
115 4hat_C Exportin-1; heat repeat 70.3 34 0.0012 31.1 10.3 91 9-101 59-164 (1023)
116 3jxy_A Alkylpurine DNA glycosy 70.3 4 0.00014 30.5 3.7 86 4-97 136-221 (232)
117 3opb_A SWI5-dependent HO expre 67.9 13 0.00044 33.2 6.9 63 4-66 659-729 (778)
118 1t06_A Hypothetical protein; s 66.5 8.5 0.00029 28.8 4.8 95 4-98 113-221 (235)
119 2iw3_A Elongation factor 3A; a 66.1 37 0.0013 31.1 9.6 81 3-83 99-181 (986)
120 3ibv_A Exportin-T; karyopherin 65.7 15 0.00051 33.1 7.0 61 10-70 712-773 (980)
121 1vsy_5 Proteasome activator BL 65.4 8.8 0.0003 35.0 5.4 81 3-83 847-944 (997)
122 1vsy_4 Proteasome activator BL 63.2 47 0.0016 29.5 9.6 97 5-101 345-453 (799)
123 1vsy_5 Proteasome activator BL 61.3 9.5 0.00033 34.8 4.9 80 2-81 136-224 (997)
124 3dad_A FH1/FH2 domain-containi 61.1 63 0.0021 25.9 9.6 64 36-99 202-282 (339)
125 2jby_A M11L protein; apoptosis 60.2 12 0.00039 26.3 4.1 29 38-66 78-106 (145)
126 3ldz_A STAM-1, signal transduc 58.7 36 0.0012 23.4 6.6 80 4-83 47-133 (140)
127 3oc3_A Helicase MOT1, MOT1; re 58.2 29 0.00098 30.7 7.0 94 4-102 304-403 (800)
128 2x1g_F Cadmus; transport prote 57.5 27 0.00091 30.6 7.0 90 14-103 436-535 (971)
129 3gjx_A Exportin-1; transport, 54.9 60 0.002 29.8 9.0 95 6-102 67-177 (1073)
130 3oc3_A Helicase MOT1, MOT1; re 54.0 28 0.00097 30.7 6.3 112 9-127 273-391 (800)
131 1vdy_A Hypothetical protein (R 50.6 61 0.0021 22.6 7.3 31 71-102 47-77 (140)
132 1x5b_A Signal transducing adap 49.8 62 0.0021 22.8 6.8 72 46-122 29-106 (163)
133 1vdy_A Hypothetical protein (R 46.8 32 0.0011 24.1 4.7 40 33-72 46-85 (140)
134 4f52_E Glomulin; cullin-ring E 44.0 30 0.001 29.7 5.0 55 9-65 376-431 (596)
135 2bcx_B Ryanodine receptor 1; E 43.8 15 0.0005 19.3 1.9 13 15-27 14-26 (30)
136 3clj_A Protein NRD1; CTD-inter 43.2 25 0.00086 25.1 3.7 52 34-86 3-54 (157)
137 4gmj_A CCR4-NOT transcription 42.9 27 0.00093 26.5 4.1 28 74-102 147-182 (229)
138 4atg_A TAF6; transcription, TF 42.6 70 0.0024 23.5 6.3 67 14-83 105-178 (196)
139 1lrv_A LRV, leucine-rich repea 41.8 16 0.00053 27.7 2.6 19 40-58 102-120 (244)
140 4flb_A Regulation of nuclear P 40.7 78 0.0027 21.0 6.9 110 4-122 13-130 (132)
141 3s4w_B Protein FACD2, fanconi 39.2 36 0.0012 32.2 5.0 78 6-83 407-485 (1323)
142 1lsh_A Lipovitellin (LV-1N, LV 38.7 1.8E+02 0.0062 26.4 9.5 108 5-121 397-522 (1056)
143 1t06_A Hypothetical protein; s 34.1 47 0.0016 24.6 4.2 40 5-44 157-196 (235)
144 1mhq_A ADP-ribosylation factor 33.7 1.2E+02 0.004 21.0 8.4 79 4-84 43-133 (148)
145 1lrv_A LRV, leucine-rich repea 33.2 46 0.0016 25.0 4.0 17 5-21 128-144 (244)
146 3pvv_A Chromosomal replication 32.9 85 0.0029 20.4 4.9 43 36-80 51-93 (101)
147 1w9c_A CRM1 protein, exportin 30.7 1.6E+02 0.0056 23.2 7.0 48 17-64 46-106 (321)
148 3g2s_A C-terminal fragment of 29.2 1.4E+02 0.0049 20.6 8.3 78 4-83 53-142 (149)
149 1pve_A HHR23B, UV excision rep 28.8 34 0.0012 21.3 2.2 13 24-36 19-31 (72)
150 3fga_B Serine/threonine-protei 27.6 1.1E+02 0.0039 24.9 5.7 73 20-92 235-309 (403)
151 2p9x_A Hypothetical protein PH 26.9 44 0.0015 22.0 2.5 56 61-119 39-96 (99)
152 3jxy_A Alkylpurine DNA glycosy 26.7 36 0.0012 25.1 2.4 36 4-39 171-206 (232)
153 3rru_A TOM1L1 protein; structu 25.0 1.1E+02 0.0038 21.3 4.6 42 60-101 40-81 (152)
154 1j1v_A Chromosomal replication 24.3 1.4E+02 0.0048 18.9 5.2 45 37-82 48-92 (94)
155 3zyq_A Hepatocyte growth facto 23.7 1.4E+02 0.0047 22.0 5.1 66 58-124 30-101 (226)
156 2npp_B PP2A, B subunit, serine 23.3 1.7E+02 0.0059 24.2 6.1 65 20-84 268-333 (449)
157 2gtq_A Aminopeptidase N; alani 22.2 2.7E+02 0.0092 24.8 7.5 116 8-128 718-858 (867)
158 3fga_B Serine/threonine-protei 21.6 1.8E+02 0.006 23.8 5.7 74 5-78 299-379 (403)
159 2jqq_A Conserved oligomeric go 21.4 1.7E+02 0.006 21.7 5.1 33 52-84 171-203 (204)
160 2zs0_D Extracellular giant hem 21.4 1.9E+02 0.0066 19.4 7.8 19 18-36 31-49 (145)
161 2jak_A Serine/threonine-protei 21.3 1.6E+02 0.0054 24.0 5.4 63 21-83 281-344 (392)
162 1rz4_A Eukaryotic translation 20.4 82 0.0028 23.5 3.3 28 19-46 46-75 (226)
163 2vj4_A Protein MXIC, MXIC; sec 20.3 1.4E+02 0.0049 23.3 4.8 47 85-132 54-100 (294)
164 3lb2_A Dehaloperoxidase A; glo 20.2 1.6E+02 0.0055 19.7 4.6 107 16-123 14-134 (137)
No 1
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.90 E-value=1.1e-23 Score=182.36 Aligned_cols=122 Identities=21% Similarity=0.396 Sum_probs=112.0
Q ss_pred Chhhhhhc--CCCChHHHHHHHHHHHHHHhHCCCCch--hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHH
Q psy11028 1 MLGYFIYL--TSTKPYLRKKAVLMMYKVFLKFPDALR--PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAP 76 (136)
Q Consensus 1 ~~~V~klL--~~s~~~VRKKA~l~~~rl~~~~P~~v~--~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp 76 (136)
.++|.++| .|++|||||||++|++|+|+++||.++ +|.+++.++|+|+|+||+.+|++++++++..+|+.|..++|
T Consensus 148 ~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~ 227 (621)
T 2vgl_A 148 AGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVS 227 (621)
T ss_dssp TTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 36789999 999999999999999999999999999 79999999999999999999999999999999999999999
Q ss_pred HHHHHhcc------C----------CChhHHHHHHHHhhhcCCC-ChHHHhhhHHHHHHHHhc
Q psy11028 77 VFFKLMTT------S----------SNNWMLIKIIKLFGALTPL-EPRLGKKLIEPLTNLIHR 122 (136)
Q Consensus 77 ~lv~iL~~------v----------~~pWlqikiLk~L~~l~~~-e~~~~~~l~e~l~~iL~~ 122 (136)
.++++|++ . ++||+|+++|++|+.+++. +++..+++.+.+..++++
T Consensus 228 ~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~ 290 (621)
T 2vgl_A 228 LAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNK 290 (621)
T ss_dssp HHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Confidence 99988863 2 3899999999999999985 588889999988888854
No 2
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.87 E-value=4.7e-23 Score=169.21 Aligned_cols=131 Identities=8% Similarity=0.071 Sum_probs=103.7
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHh
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM 82 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL 82 (136)
.+.+.|.|.+|||||+|++|.+|+++++||.++.|.+.+.++++|+||+|+.+|+++++++.+.++..+.++++.+.+.
T Consensus 143 ~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l~~~- 221 (355)
T 3tjz_B 143 YMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLAVSKMISKFTRH- 221 (355)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchHHHHHHHHHHhcC-
Confidence 5778999999999999999999999999999999999999999999999999999999999998876666666655431
Q ss_pred ccCCChhHHHHHHHHhhhcCCCC-hHHHhhhHHHHHHHHhccchhhhhhhcccC
Q psy11028 83 TTSSNNWMLIKIIKLFGALTPLE-PRLGKKLIEPLTNLIHRIISLSCWTGIKPM 135 (136)
Q Consensus 83 ~~v~~pWlqikiLk~L~~l~~~e-~~~~~~l~e~l~~iL~~~~s~sv~~~~k~~ 135 (136)
++.+||.|+.++|+++.++++| ++.+++++|.+.+.|++.+++++..++|.+
T Consensus 222 -~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I 274 (355)
T 3tjz_B 222 -GLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAI 274 (355)
T ss_dssp -CCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHH
T ss_pred -CCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 3679999999999999999988 889999999999999999999999998864
No 3
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.86 E-value=5.6e-22 Score=170.79 Aligned_cols=132 Identities=20% Similarity=0.358 Sum_probs=118.5
Q ss_pred hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCc---chhhhHHHH
Q psy11028 2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK---NYLSLAPVF 78 (136)
Q Consensus 2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~---~~~~lvp~l 78 (136)
.+|.++|+|++|||||+|++|++++|+.+|+.++.|++.+.++|+|+|++|+.+|+.++.+++..+|+ .|.+++|.+
T Consensus 145 ~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l 224 (618)
T 1w63_A 145 GEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQL 224 (618)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999998875 688999999
Q ss_pred HHHhcc--------------CCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhcc------chhhhhhhcc
Q psy11028 79 FKLMTT--------------SSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRI------ISLSCWTGIK 133 (136)
Q Consensus 79 v~iL~~--------------v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~------~s~sv~~~~k 133 (136)
+++|++ +++||+|++++++|+.+++.+|+..+++.+.+.++++++ +.+++..++|
T Consensus 225 ~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~ 299 (618)
T 1w63_A 225 VRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVL 299 (618)
T ss_dssp HHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 999885 579999999999999999999999999999999988643 3345555554
No 4
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.81 E-value=8.9e-20 Score=155.88 Aligned_cols=132 Identities=20% Similarity=0.315 Sum_probs=116.6
Q ss_pred hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCch--hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcc-hhhhHHH-
Q psy11028 2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR--PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKN-YLSLAPV- 77 (136)
Q Consensus 2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~--~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~-~~~lvp~- 77 (136)
+++.++++|++|||||+|+.|++++++.+|+.++ .+++.+.++|+|+|++|..+|+.++.+++..+|+. +..+.+.
T Consensus 124 ~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~ 203 (591)
T 2vgl_B 124 EPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQN 203 (591)
T ss_dssp HHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHH
T ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHH
Confidence 4588999999999999999999999999999998 48999999999999999999999999999999876 4445443
Q ss_pred ---HHHHhccCCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccchhhhhhhccc
Q psy11028 78 ---FFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLSCWTGIKP 134 (136)
Q Consensus 78 ---lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~s~sv~~~~k~ 134 (136)
+.+.+.. ++||+|+++|++|+.+++.+++..+++.+.+.+.+++.+++++..+++.
T Consensus 204 ~~~Ll~~l~~-~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~ 262 (591)
T 2vgl_B 204 INKLLTALNE-CTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKV 262 (591)
T ss_dssp HHHHHHHHHH-CCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHH
T ss_pred HHHHHHcCCC-CCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 4444444 7999999999999999999999999999999999999999888877764
No 5
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.44 E-value=2.9e-06 Score=61.67 Aligned_cols=127 Identities=13% Similarity=0.136 Sum_probs=102.8
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch-----hh
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY-----LS 73 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~-----~~ 73 (136)
+.++|+++++.+|..|+.++..+...+++... ..++.+.++|.+.|+.|...++..+..++..+++.. ..
T Consensus 17 l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g 96 (210)
T 4db6_A 17 MVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG 96 (210)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCC
Confidence 56788999999999999999999987776543 367999999999999999999999999998776532 23
Q ss_pred hHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHH-----hhhHHHHHHHHhccchhhhhhh
Q psy11028 74 LAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLG-----KKLIEPLTNLIHRIISLSCWTG 131 (136)
Q Consensus 74 lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~-----~~l~e~l~~iL~~~~s~sv~~~ 131 (136)
.+|.++++|.+ ++|-.+......|..++..++... ...++.+.++|++.+......+
T Consensus 97 ~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a 158 (210)
T 4db6_A 97 ALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 158 (210)
T ss_dssp CHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHH
T ss_pred CHHHHHHHHcC-CcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHH
Confidence 68999999987 689999999999999997665442 3467888888887765544433
No 6
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.34 E-value=5.4e-06 Score=61.07 Aligned_cols=128 Identities=19% Similarity=0.135 Sum_probs=104.5
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch-----h
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY-----L 72 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~-----~ 72 (136)
-+.++|+++++.+|..|+.++..+...+|+... ..++.+.++|.+.|+.|...++..+..++..+++.. .
T Consensus 90 ~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 169 (252)
T 4hxt_A 90 VLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDA 169 (252)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence 356788999999999999999999987776543 368999999999999999999999999998776532 2
Q ss_pred hhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHhh-----hHHHHHHHHhccchhhhhhh
Q psy11028 73 SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKK-----LIEPLTNLIHRIISLSCWTG 131 (136)
Q Consensus 73 ~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~~-----l~e~l~~iL~~~~s~sv~~~ 131 (136)
..+|.++++|.. ++|..+...+.+|..++..++...+. .++.+.+++++.+....-.+
T Consensus 170 ~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 232 (252)
T 4hxt_A 170 GGVEVLVKLLTS-TDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEA 232 (252)
T ss_dssp THHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHH
T ss_pred cCHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHH
Confidence 478999999986 78999999999999999876654433 46888888887776554444
No 7
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.33 E-value=7.2e-06 Score=60.36 Aligned_cols=127 Identities=18% Similarity=0.121 Sum_probs=102.7
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh-----
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL----- 72 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~----- 72 (136)
.+.++|+++++.+|..|+.++..+...+++... ..++.+.++|.+.|+.|..+++.++..++..+++...
T Consensus 48 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 127 (252)
T 4hxt_A 48 VLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDA 127 (252)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence 356788999999999999999999887666443 3689999999999999999999999999987765332
Q ss_pred hhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHH-----hhhHHHHHHHHhccchhhhhh
Q psy11028 73 SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLG-----KKLIEPLTNLIHRIISLSCWT 130 (136)
Q Consensus 73 ~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~-----~~l~e~l~~iL~~~~s~sv~~ 130 (136)
..+|.++++|+. ++|..+...+..|+.++..++... ...++.+.+++++.+......
T Consensus 128 ~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~ 189 (252)
T 4hxt_A 128 GGVEVLVKLLTS-TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKE 189 (252)
T ss_dssp THHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHH
T ss_pred CCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHH
Confidence 468999999986 789999999999999998665432 346788888888766544433
No 8
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.32 E-value=5.7e-06 Score=60.05 Aligned_cols=127 Identities=13% Similarity=0.170 Sum_probs=102.7
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch-----h
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY-----L 72 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~-----~ 72 (136)
-+.++|+++++.+|..|+.++..+...+++... +.++.+.++|.+.|+.|...++.++..++..+++.. .
T Consensus 58 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 137 (210)
T 4db6_A 58 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 137 (210)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 356788999999999999999999877765432 367999999999999999999999999998777643 2
Q ss_pred hhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHh-----hhHHHHHHHHhccchhhhhh
Q psy11028 73 SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGK-----KLIEPLTNLIHRIISLSCWT 130 (136)
Q Consensus 73 ~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~-----~l~e~l~~iL~~~~s~sv~~ 130 (136)
..+|.++++|.. +++-.+...+..|..+...++...+ ..++.+.+++++.+....-.
T Consensus 138 ~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~ 199 (210)
T 4db6_A 138 GALPALVQLLSS-PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKE 199 (210)
T ss_dssp THHHHHHHHTTC-SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHH
T ss_pred CcHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHH
Confidence 468999999987 6999999999999999877554333 35678888888766654433
No 9
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.26 E-value=5.4e-06 Score=61.70 Aligned_cols=126 Identities=13% Similarity=0.167 Sum_probs=100.7
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHCCCC----ch-hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch-----h
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDA----LR-PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY-----L 72 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~----v~-~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~-----~ 72 (136)
-+.++|+++++.+|+.|+.++..+....+.. ++ ..++.+.++|.+.|+.|...++..+..++..+++.. .
T Consensus 100 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 179 (252)
T 4db8_A 100 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 179 (252)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHC
Confidence 3567889999999999999999998766543 12 368999999999999999999999999998776532 3
Q ss_pred hhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHh-----hhHHHHHHHHhccchhhhh
Q psy11028 73 SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGK-----KLIEPLTNLIHRIISLSCW 129 (136)
Q Consensus 73 ~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~-----~l~e~l~~iL~~~~s~sv~ 129 (136)
..+|.++++|.. ++|..+...+.+|..+...++...+ ...+.+.+++++.+...--
T Consensus 180 ~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~ 240 (252)
T 4db8_A 180 GALPALVQLLSS-PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQK 240 (252)
T ss_dssp TCHHHHHHGGGC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHH
T ss_pred CCHHHHHHHHCC-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHH
Confidence 579999999987 6999999999999999977665433 3556677777776654433
No 10
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.17 E-value=4.3e-06 Score=71.14 Aligned_cols=127 Identities=14% Similarity=0.146 Sum_probs=82.2
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHh
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM 82 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL 82 (136)
+|.+++++++..+||-+.+++-.+.+.+||.+....+.+.+-|.|+|+.+-..|+..+..+. .|+....++|.+.+.|
T Consensus 53 ~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~--~~~~~~~l~~~l~~~L 130 (591)
T 2vgl_B 53 DVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR--VDKITEYLCEPLRKCL 130 (591)
T ss_dssp HHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC--SGGGHHHHHHHHHHHS
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC--hHHHHHHHHHHHHHHc
Confidence 56677777777777777777777777777766666677777777777777777765555442 5556666677777777
Q ss_pred ccCCChhHHHHHHHHhhhcCCCChHHHh--hhHHHHHHHHhccchhhhhhhc
Q psy11028 83 TTSSNNWMLIKIIKLFGALTPLEPRLGK--KLIEPLTNLIHRIISLSCWTGI 132 (136)
Q Consensus 83 ~~v~~pWlqikiLk~L~~l~~~e~~~~~--~l~e~l~~iL~~~~s~sv~~~~ 132 (136)
.+ ++|...-+-...+..+...+|+... .+.+.+.+.|+..+..++.+|+
T Consensus 131 ~d-~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~ 181 (591)
T 2vgl_B 131 KD-EDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAV 181 (591)
T ss_dssp SC-SCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHH
T ss_pred CC-CChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHH
Confidence 64 6777766666666555433333222 4667777777666655555443
No 11
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.14 E-value=1.5e-05 Score=59.20 Aligned_cols=129 Identities=12% Similarity=0.132 Sum_probs=102.1
Q ss_pred hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh----
Q psy11028 2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL---- 72 (136)
Q Consensus 2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~---- 72 (136)
.++.++|+++++.+|..|+.++.++....++... ..++.+.++|.+.++.|...++..+..++..+++...
T Consensus 15 ~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 94 (252)
T 4db8_A 15 PQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 94 (252)
T ss_dssp HHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3577899999999999999999887766443322 3679999999999999999999999999987765332
Q ss_pred -hhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHH-----HhhhHHHHHHHHhccchhhhhhh
Q psy11028 73 -SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRL-----GKKLIEPLTNLIHRIISLSCWTG 131 (136)
Q Consensus 73 -~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~-----~~~l~e~l~~iL~~~~s~sv~~~ 131 (136)
..+|.++++|+. +++-.+...+..|+.++..++.. ....++.+.+.|++.+......+
T Consensus 95 ~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a 158 (252)
T 4db8_A 95 AGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 158 (252)
T ss_dssp TTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHH
T ss_pred cCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHH
Confidence 368999999988 78999999999999999776432 23467888888887765544433
No 12
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.97 E-value=0.00014 Score=60.27 Aligned_cols=127 Identities=13% Similarity=0.108 Sum_probs=101.1
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHC-CCCc----hhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh-----
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKF-PDAL----RPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL----- 72 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~-P~~v----~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~----- 72 (136)
-+.++|.++++.+|+.|+.|+..+.+.. |..- ...++.+.++|.+.|+.|...++..+..++..+++...
T Consensus 219 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~ 298 (530)
T 1wa5_B 219 PILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDV 298 (530)
T ss_dssp HHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHT
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhc
Confidence 3567788899999999999999999765 4322 24789999999999999999999999999987765332
Q ss_pred hhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHH-----hhhHHHHHHHHhccchhhhhh
Q psy11028 73 SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLG-----KKLIEPLTNLIHRIISLSCWT 130 (136)
Q Consensus 73 ~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~-----~~l~e~l~~iL~~~~s~sv~~ 130 (136)
..+|.++.+|.. +++..+...+++|+.++..++... ..+.+.+.++|++.+....-.
T Consensus 299 ~~v~~Lv~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~ 360 (530)
T 1wa5_B 299 RIPKRLVELLSH-ESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKE 360 (530)
T ss_dssp TCHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHH
T ss_pred CcHHHHHHHHCC-CChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHH
Confidence 578999999986 789999999999999998765433 356778888888776544333
No 13
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=97.94 E-value=0.00017 Score=52.08 Aligned_cols=86 Identities=20% Similarity=0.296 Sum_probs=41.8
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhc
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMT 83 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~ 83 (136)
+.++|+++++.+|..|+.++.++-. +..++.+.++|.|+|+.|-..++..+..+.. + ..+|.+.+.|.
T Consensus 19 ~i~~L~~~~~~vr~~A~~~L~~~~~------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--~----~~~~~L~~~l~ 86 (201)
T 3ltj_A 19 YIKNLQDDSYYVRRAAAYALGKIGD------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--E----RAVEPLIKALK 86 (201)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHCC------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G----GGHHHHHHHTT
T ss_pred HHHHhcCCCHHHHHHHHHHHHhcCC------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--H----HHHHHHHHHHc
Confidence 4455666666666666666554321 1234445555555555555555554444321 1 23444444444
Q ss_pred cCCChhHHHHHHHHhhhcC
Q psy11028 84 TSSNNWMLIKIIKLFGALT 102 (136)
Q Consensus 84 ~v~~pWlqikiLk~L~~l~ 102 (136)
. ++|+.+...++.|+.++
T Consensus 87 d-~~~~vr~~a~~aL~~~~ 104 (201)
T 3ltj_A 87 D-EDGWVRQSAAVALGQIG 104 (201)
T ss_dssp C-SSHHHHHHHHHHHHHHC
T ss_pred C-CCHHHHHHHHHHHHHhC
Confidence 3 44444444444444443
No 14
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=97.93 E-value=0.00012 Score=55.45 Aligned_cols=98 Identities=10% Similarity=0.078 Sum_probs=49.8
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHH-hhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHh
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLK-EKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM 82 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~-~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL 82 (136)
+.++|+++++.+|..|+.++.++-. .++.+...++.+. .++.|+|+.|-.+++..+-.+...+|......+|.+...|
T Consensus 59 L~~~l~d~~~~vR~~A~~aL~~l~~-~~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l 137 (280)
T 1oyz_A 59 AIEFCSDKNYIRRDIGAFILGQIKI-CKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITA 137 (280)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHSCC-CTTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHh
Confidence 3445555566666666655544321 1222333333443 2345666666666666666666555444444555555555
Q ss_pred ccCCChhHHHHHHHHhhhcCC
Q psy11028 83 TTSSNNWMLIKIIKLFGALTP 103 (136)
Q Consensus 83 ~~v~~pWlqikiLk~L~~l~~ 103 (136)
.. ++|+.+......|+.++.
T Consensus 138 ~d-~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 138 FD-KSTNVRRATAFAISVIND 157 (280)
T ss_dssp TC-SCHHHHHHHHHHHHTC--
T ss_pred hC-CCHHHHHHHHHHHHhcCC
Confidence 44 455555555555555543
No 15
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.90 E-value=7.1e-05 Score=61.14 Aligned_cols=107 Identities=14% Similarity=0.047 Sum_probs=89.1
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhcc
Q psy11028 5 FIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTT 84 (136)
Q Consensus 5 ~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~~ 84 (136)
.+=++|++|++|=-|+-++-++ .+|+.++...+.+++.|.|+||.|-.+|+-....+...+|+..+.++..+.+.+..
T Consensus 110 ~kDl~~~N~~iR~lALRtL~~I--~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~l~~ll~d 187 (355)
T 3tjz_B 110 TKDMTGKEDSYRGPAVRALCQI--TDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEAASS 187 (355)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHH--CCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHTTC
T ss_pred HhhcCCCcHhHHHHHHHHHhcC--CCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcC
Confidence 4456789999998887777766 57889999999999999999999999999999999999999888899999888876
Q ss_pred CCChhHHHHHHHHhhhcCCCChHHHhhhHH
Q psy11028 85 SSNNWMLIKIIKLFGALTPLEPRLGKKLIE 114 (136)
Q Consensus 85 v~~pWlqikiLk~L~~l~~~e~~~~~~l~e 114 (136)
.+|..|..-+.+|..+...|+..-.+++.
T Consensus 188 -~n~~V~~~Al~lL~ei~~~d~~a~~kLv~ 216 (355)
T 3tjz_B 188 -DNIMVQYHALGLLYHVRKNDRLAVSKMIS 216 (355)
T ss_dssp -SSHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -CCccHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 79999999999888887766533344433
No 16
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=97.87 E-value=0.00023 Score=51.69 Aligned_cols=27 Identities=11% Similarity=0.351 Sum_probs=12.5
Q ss_pred HHHHHHHhccCCChhHHHHHHHHhhhcC
Q psy11028 75 APVFFKLMTTSSNNWMLIKIIKLFGALT 102 (136)
Q Consensus 75 vp~lv~iL~~v~~pWlqikiLk~L~~l~ 102 (136)
+|.+...|.. ++|+.+....+.|+.++
T Consensus 145 ~~~L~~~l~d-~~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 145 VEPLIKALKD-EDGWVRQSAADALGEIG 171 (211)
T ss_dssp HHHHHHHTTC-SSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHHhC
Confidence 3444444432 44555555555555443
No 17
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=97.86 E-value=0.00031 Score=51.00 Aligned_cols=108 Identities=15% Similarity=0.147 Sum_probs=83.6
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHh
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM 82 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL 82 (136)
.+.++|+++++.||..|+.++.++-. +...+.+.++|.|+|+.|-.+++..+..+.. ...+|.+...|
T Consensus 54 ~L~~~l~~~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l 121 (211)
T 3ltm_A 54 PLIKALKDEDAWVRRAAADALGQIGD------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD------ERAVEPLIKAL 121 (211)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHCC------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------GGGHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhhCC------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------HHHHHHHHHHH
Confidence 45678899999999999999987642 3466788899999999999999988877642 24778889988
Q ss_pred ccCCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccchhhhh
Q psy11028 83 TTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLSCW 129 (136)
Q Consensus 83 ~~v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~s~sv~ 129 (136)
.. ++|..+...+..|+.++.. ...+.+.+.++..+..+-.
T Consensus 122 ~d-~~~~vr~~a~~aL~~~~~~------~~~~~L~~~l~d~~~~vr~ 161 (211)
T 3ltm_A 122 KD-EDWFVRIAAAFALGEIGDE------RAVEPLIKALKDEDGWVRQ 161 (211)
T ss_dssp TC-SSHHHHHHHHHHHHHHCCG------GGHHHHHHHTTCSSHHHHH
T ss_pred hC-CCHHHHHHHHHHHHHcCCH------HHHHHHHHHHcCCCHHHHH
Confidence 66 8999999999999998753 3556666666655554433
No 18
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.84 E-value=0.00021 Score=56.92 Aligned_cols=120 Identities=16% Similarity=0.199 Sum_probs=95.4
Q ss_pred hhhhhhcCCCChHHHHHHHHHHHHHHh--HCCCC---ch--hhHHHHHhhcCCC-ChhHHHHHHHHHHHHHhcCCcch--
Q psy11028 2 LGYFIYLTSTKPYLRKKAVLMMYKVFL--KFPDA---LR--PAFPRLKEKLEDP-DSGVQSAAVNVVCELARKNPKNY-- 71 (136)
Q Consensus 2 ~~V~klL~~s~~~VRKKA~l~~~rl~~--~~P~~---v~--~~~~~l~~lL~D~-d~~V~~aal~l~~~l~~~~p~~~-- 71 (136)
+.+.+.|+++++.+|..|+.++.++.. .+|.. ++ ..++.+.++|.+. ++.|...++..+..++..+++..
T Consensus 23 ~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 102 (450)
T 2jdq_A 23 SDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRI 102 (450)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 346677889999999999999999875 34432 22 4688999999988 89999999999999998765432
Q ss_pred ---hhhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHH-----hhhHHHHHHHHhc
Q psy11028 72 ---LSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLG-----KKLIEPLTNLIHR 122 (136)
Q Consensus 72 ---~~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~-----~~l~e~l~~iL~~ 122 (136)
...+|.+++.|+. ++|-.+...+..|..++..++... ....+.+.++++.
T Consensus 103 ~~~~~~i~~L~~lL~~-~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~ 160 (450)
T 2jdq_A 103 VIQAGAVPIFIELLSS-EFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSK 160 (450)
T ss_dssp HHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTS
T ss_pred HHhCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC
Confidence 3579999999987 789999999999999988765433 2467788888875
No 19
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=97.83 E-value=0.00022 Score=54.04 Aligned_cols=108 Identities=10% Similarity=0.036 Sum_probs=76.3
Q ss_pred hcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhccCC
Q psy11028 7 YLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSS 86 (136)
Q Consensus 7 lL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~~v~ 86 (136)
+++++++.||..|+.++.++...+|...+..++.+.++|.|+|+.|-.+++..+..+.. | ..+|.+...|+. +
T Consensus 99 ~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--~----~~~~~L~~~l~d-~ 171 (280)
T 1oyz_A 99 ALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--K----ATIPLLINLLKD-P 171 (280)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---------CCHHHHHHHHTC-S
T ss_pred HhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--H----HHHHHHHHHHcC-C
Confidence 45788999999999999999887776666778888888999999988888777665433 1 367777777765 6
Q ss_pred ChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccch
Q psy11028 87 NNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIIS 125 (136)
Q Consensus 87 ~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~s 125 (136)
+|+........|+.++..++ ...+.+.+.++..+.
T Consensus 172 ~~~vr~~a~~aL~~~~~~~~----~~~~~L~~~l~d~~~ 206 (280)
T 1oyz_A 172 NGDVRNWAAFAININKYDNS----DIRDCFVEMLQDKNE 206 (280)
T ss_dssp SHHHHHHHHHHHHHHTCCCH----HHHHHHHHHTTCSCH
T ss_pred CHHHHHHHHHHHHhhccCcH----HHHHHHHHHhcCCCH
Confidence 77777777777777765443 344555555554443
No 20
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=97.83 E-value=0.00032 Score=50.60 Aligned_cols=54 Identities=19% Similarity=0.194 Sum_probs=30.5
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHH
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCEL 63 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l 63 (136)
+.++|+++++.||..|+.++.++- + +...+.+.++|.|+|+.|-.+++..+..+
T Consensus 50 L~~~l~~~~~~vr~~a~~~L~~~~--~----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 103 (201)
T 3ltj_A 50 LIKALKDEDAWVRRAAADALGQIG--D----ERAVEPLIKALKDEDGWVRQSAAVALGQI 103 (201)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHC--C----GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHhhC--C----HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 445566666666666666665542 1 12345555566666666666655555443
No 21
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.83 E-value=1.3e-05 Score=68.73 Aligned_cols=123 Identities=17% Similarity=0.064 Sum_probs=58.8
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHh
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM 82 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL 82 (136)
+|.+++++++...||-+.+++..+...+||.....+..+.+-|.|+|+.|...|+..+..+. .|+....++|.+.+.|
T Consensus 74 ~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~--~~~~~~~l~~~l~~~L 151 (618)
T 1w63_A 74 ECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG--SSEMCRDLAGEVEKLL 151 (618)
T ss_dssp HHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC--CHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555544444455555555555555555555555543 2333334444444444
Q ss_pred ccCCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccchhhh
Q psy11028 83 TTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLSC 128 (136)
Q Consensus 83 ~~v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~s~sv 128 (136)
+. ++|+..-+-...+..+....|+..+.+.+.+.+.|...+..++
T Consensus 152 ~~-~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~~lL~D~d~~V~ 196 (618)
T 1w63_A 152 KT-SNSYLRKKAALCAVHVIRKVPELMEMFLPATKNLLNEKNHGVL 196 (618)
T ss_dssp HS-CCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTTSTTCCCHHHH
T ss_pred cC-CCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhCCCCHhHH
Confidence 44 4454444444444433333333333444444444444443333
No 22
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.79 E-value=0.0005 Score=51.43 Aligned_cols=121 Identities=15% Similarity=0.214 Sum_probs=83.2
Q ss_pred hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCch----hhHHHHHhhcC-CCChhHHHHHHHHHHHHHhcCCcchh----
Q psy11028 2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR----PAFPRLKEKLE-DPDSGVQSAAVNVVCELARKNPKNYL---- 72 (136)
Q Consensus 2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~----~~~~~l~~lL~-D~d~~V~~aal~l~~~l~~~~p~~~~---- 72 (136)
+++.+.+++++...|+-|+.++..+....|+... .+.+.+.++|. |+|..|..+++..+..++..-.+.|.
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~ 97 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYAS 97 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3567788999999999999999999998776443 46788999995 99999999999999999975544343
Q ss_pred hhHHHHHHHhccCCChhHHHHHHHHhh-----------------hcCCCChHHHhhhHHHHHHHHhcc
Q psy11028 73 SLAPVFFKLMTTSSNNWMLIKIIKLFG-----------------ALTPLEPRLGKKLIEPLTNLIHRI 123 (136)
Q Consensus 73 ~lvp~lv~iL~~v~~pWlqikiLk~L~-----------------~l~~~e~~~~~~l~e~l~~iL~~~ 123 (136)
.++|.+...+++ +++-.+-.....+. .+...+++......+.+..++.+.
T Consensus 98 ~ilp~ll~~l~d-~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~ 164 (242)
T 2qk2_A 98 ACVPSLLEKFKE-KKPNVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRT 164 (242)
T ss_dssp HHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 456666666664 33333333333333 333344555555666666555443
No 23
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.77 E-value=0.00027 Score=56.24 Aligned_cols=124 Identities=13% Similarity=0.047 Sum_probs=98.8
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh-----h
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL-----S 73 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~-----~ 73 (136)
+.++++++++.+|..|+-++..+....++... ..++.+.++|.+.|+.|..+++..+..++..+++... .
T Consensus 197 L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 276 (450)
T 2jdq_A 197 LSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCS 276 (450)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTT
T ss_pred HHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCc
Confidence 56778899999999999999999876654332 3678999999999999999999999999887764322 4
Q ss_pred hHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHH-----hhhHHHHHHHHhccchhhh
Q psy11028 74 LAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLG-----KKLIEPLTNLIHRIISLSC 128 (136)
Q Consensus 74 lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~-----~~l~e~l~~iL~~~~s~sv 128 (136)
.+|.++++|.. +++-.+...+..|+.++...+... ..+.+.+.+.|+..+..+-
T Consensus 277 ~l~~L~~ll~~-~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~ 335 (450)
T 2jdq_A 277 ALQSLLHLLSS-PKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTR 335 (450)
T ss_dssp HHHHHHHHTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHH
T ss_pred cHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHH
Confidence 78999999987 689999999999999997665433 3566778888877665443
No 24
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.75 E-value=0.0007 Score=50.61 Aligned_cols=121 Identities=12% Similarity=0.076 Sum_probs=94.6
Q ss_pred hhhhcC-CCChHHHHHHHHHHHHHHhHCCCCch----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHH
Q psy11028 4 YFIYLT-STKPYLRKKAVLMMYKVFLKFPDALR----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVF 78 (136)
Q Consensus 4 V~klL~-~s~~~VRKKA~l~~~rl~~~~P~~v~----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~l 78 (136)
+.+++. ++++.||+.|+.|+-.+...-...++ .+++.+.+.+.|+++.|-.++...+.+++..-+ +..++|.+
T Consensus 61 L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~~ll~~l 138 (242)
T 2qk2_A 61 LKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LEAQQESI 138 (242)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHH
Confidence 456774 99999999999999999976544333 367889999999999999999999999988643 56789999
Q ss_pred HHHhccCCChhHHHHHHHHhhhc-CCCC-----hHHHhhhHHHHHHHHhccchhh
Q psy11028 79 FKLMTTSSNNWMLIKIIKLFGAL-TPLE-----PRLGKKLIEPLTNLIHRIISLS 127 (136)
Q Consensus 79 v~iL~~v~~pWlqikiLk~L~~l-~~~e-----~~~~~~l~e~l~~iL~~~~s~s 127 (136)
...|++ .+|..+...+.++..+ ...+ ...-..+.+.+.+.++..+..+
T Consensus 139 ~~~l~~-~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~V 192 (242)
T 2qk2_A 139 VESLSN-KNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTV 192 (242)
T ss_dssp HHHTTC-SCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHH
T ss_pred HHHHcC-CChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHH
Confidence 999886 6888999999999884 3322 2334578888888887666543
No 25
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.75 E-value=3.2e-05 Score=66.67 Aligned_cols=129 Identities=10% Similarity=0.045 Sum_probs=91.1
Q ss_pred hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHH
Q psy11028 2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKL 81 (136)
Q Consensus 2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~i 81 (136)
.+|.+++++++...||-+.+++-.+...+||.+.-....+++=|.|+|+-+.+.|+..+..+ ..|+....+.|.+.+.
T Consensus 77 ~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i--~~~e~~~~l~~~v~~~ 154 (621)
T 2vgl_A 77 MEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANV--GSREMAEAFAGEIPKI 154 (621)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH--CCHHHHHHHTTHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcc--CCHHHHHHHHHHHHHH
Confidence 46788888888888888888888888888887776778888888888888888888888777 4567777788888888
Q ss_pred hc-cCCChhHHHHHHHHhhhcCCCChHHHh--hhHHHHHHHHhccchhhhhhhc
Q psy11028 82 MT-TSSNNWMLIKIIKLFGALTPLEPRLGK--KLIEPLTNLIHRIISLSCWTGI 132 (136)
Q Consensus 82 L~-~v~~pWlqikiLk~L~~l~~~e~~~~~--~l~e~l~~iL~~~~s~sv~~~~ 132 (136)
|. +-++|...=+-.-.+..+...+|+... .+.+.+.+.|+..+..++.+++
T Consensus 155 l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~ 208 (621)
T 2vgl_A 155 LVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAAT 208 (621)
T ss_dssp HHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHH
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHH
Confidence 83 236777754433333322223344444 6778888888776665555543
No 26
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.75 E-value=0.00054 Score=56.44 Aligned_cols=123 Identities=17% Similarity=0.219 Sum_probs=98.8
Q ss_pred hhhhc-CCCChHHHHHHHHHHHHHHhHCCCCc----hhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch-----hh
Q psy11028 4 YFIYL-TSTKPYLRKKAVLMMYKVFLKFPDAL----RPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY-----LS 73 (136)
Q Consensus 4 V~klL-~~s~~~VRKKA~l~~~rl~~~~P~~v----~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~-----~~ 73 (136)
+.++| +++++.+|+.|+-++..+....|... ...++.+.++|.+.|+.|...++..+..++..++... ..
T Consensus 207 Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g 286 (528)
T 4b8j_A 207 LLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAG 286 (528)
T ss_dssp HHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTT
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 45667 67899999999999999998866533 3478999999999999999999999999987665432 24
Q ss_pred hHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHH-----hhhHHHHHHHHhcc-chhh
Q psy11028 74 LAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLG-----KKLIEPLTNLIHRI-ISLS 127 (136)
Q Consensus 74 lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~-----~~l~e~l~~iL~~~-~s~s 127 (136)
.+|.++++|.. +++..+...+++|+.++..++... ..+++.+.++|++. +...
T Consensus 287 ~v~~Lv~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v 345 (528)
T 4b8j_A 287 VCPRLVELLLH-PSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSI 345 (528)
T ss_dssp CHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHcC-CChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHH
Confidence 79999999987 689999999999999998765433 34578888888877 4433
No 27
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.71 E-value=0.00053 Score=56.47 Aligned_cols=128 Identities=16% Similarity=0.133 Sum_probs=102.0
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhc-CCCChhHHHHHHHHHHHHHhcCCcc----hhh
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKL-EDPDSGVQSAAVNVVCELARKNPKN----YLS 73 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL-~D~d~~V~~aal~l~~~l~~~~p~~----~~~ 73 (136)
+.++|+++++.||..|+-++..+....|+.-. ..++.+.++| .+.++.|...++..+..++...|.. ...
T Consensus 165 L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~ 244 (528)
T 4b8j_A 165 FVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRP 244 (528)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTT
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHH
Confidence 56788999999999999999999877665322 3678899999 7889999999999999999876532 346
Q ss_pred hHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHH-----hhhHHHHHHHHhccchhhhhhhc
Q psy11028 74 LAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLG-----KKLIEPLTNLIHRIISLSCWTGI 132 (136)
Q Consensus 74 lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~-----~~l~e~l~~iL~~~~s~sv~~~~ 132 (136)
.+|.++++|.. +++..+...+..|..++...+... ..+.+.+.++|++.+......++
T Consensus 245 ~l~~L~~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~ 307 (528)
T 4b8j_A 245 ALPALARLIHS-NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPAL 307 (528)
T ss_dssp HHHHHHHHTTC-CCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHH
Confidence 78999999976 799999999999999997765432 24677899999888765555443
No 28
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.67 E-value=0.00047 Score=57.02 Aligned_cols=125 Identities=16% Similarity=0.073 Sum_probs=100.0
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch-----hh
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY-----LS 73 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~-----~~ 73 (136)
+.++|.++++.+|..|+.++..+....++... ..++.+.++|.+.++.|..+++..+..++..++... ..
T Consensus 262 L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 341 (530)
T 1wa5_B 262 LAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAG 341 (530)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcc
Confidence 56788999999999999999999987765443 367899999999999999999999999988776532 25
Q ss_pred hHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHH-----hhhHHHHHHHHhccchhhhh
Q psy11028 74 LAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLG-----KKLIEPLTNLIHRIISLSCW 129 (136)
Q Consensus 74 lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~-----~~l~e~l~~iL~~~~s~sv~ 129 (136)
.+|.++.+|.. +++-.+...+.+|+.++...+... ..+++.+.++|+..+....-
T Consensus 342 ~l~~L~~lL~~-~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~ 401 (530)
T 1wa5_B 342 VLPALRLLLSS-PKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKK 401 (530)
T ss_dssp HHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHH
T ss_pred hHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHH
Confidence 78999999987 588899999999999987665433 35677888888776554433
No 29
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.67 E-value=0.00017 Score=57.05 Aligned_cols=102 Identities=13% Similarity=0.133 Sum_probs=85.3
Q ss_pred hhhhcCC-CChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh-----
Q psy11028 4 YFIYLTS-TKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL----- 72 (136)
Q Consensus 4 V~klL~~-s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~----- 72 (136)
..++|++ +++.+|++|+-|+..+.+.+|+..+ ..++.+.++|.+.|+.|...++.++..++..+++...
T Consensus 129 Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~ 208 (296)
T 1xqr_A 129 LLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSM 208 (296)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHT
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHc
Confidence 3567764 5899999999999999998876443 3678999999999999999999999999998876422
Q ss_pred hhHHHHHHHhccCCChhHHHHHHHHhhhcCCCCh
Q psy11028 73 SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEP 106 (136)
Q Consensus 73 ~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~ 106 (136)
..+|.++++|.. +++=.|...++.|..+....+
T Consensus 209 g~i~~Lv~LL~~-~d~~v~~~al~aL~~l~~~~~ 241 (296)
T 1xqr_A 209 GMVQQLVALVRT-EHSPFHEHVLGALCSLVTDFP 241 (296)
T ss_dssp THHHHHHHHHTS-CCSTHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHcC-CChhHHHHHHHHHHHHHhCCh
Confidence 469999999987 688999999999998877654
No 30
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.67 E-value=0.00023 Score=56.33 Aligned_cols=123 Identities=20% Similarity=0.189 Sum_probs=97.5
Q ss_pred hhh-hcCCCChHHHHHHHHHHHHHHhHCCCC----ch-hhHHHHHhhcC-CCChhHHHHHHHHHHHHHhcCCc---chh-
Q psy11028 4 YFI-YLTSTKPYLRKKAVLMMYKVFLKFPDA----LR-PAFPRLKEKLE-DPDSGVQSAAVNVVCELARKNPK---NYL- 72 (136)
Q Consensus 4 V~k-lL~~s~~~VRKKA~l~~~rl~~~~P~~----v~-~~~~~l~~lL~-D~d~~V~~aal~l~~~l~~~~p~---~~~- 72 (136)
+.. +|+++++.||..|+.|+-.+.+.+|+. ++ +.++.|.++|. |.+.+|...++..+..+++.+|. .|.
T Consensus 86 Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~ 165 (296)
T 1xqr_A 86 LVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLR 165 (296)
T ss_dssp HHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 345 899999999999999999999988854 22 36889999997 56899999999999999988765 343
Q ss_pred -hhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHH-----HhhhHHHHHHHHhccchhh
Q psy11028 73 -SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRL-----GKKLIEPLTNLIHRIISLS 127 (136)
Q Consensus 73 -~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~-----~~~l~e~l~~iL~~~~s~s 127 (136)
..+|.++++|+. +++=+|.+...+|+.+...++.. ....++.+.+.|.+.+..+
T Consensus 166 ~ggi~~L~~lL~~-~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v 225 (296)
T 1xqr_A 166 LDGFSVLMRAMQQ-QVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPF 225 (296)
T ss_dssp TTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTH
T ss_pred CCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhH
Confidence 469999999987 79999999999999887544322 3446677888887765543
No 31
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=97.39 E-value=0.0014 Score=54.47 Aligned_cols=122 Identities=15% Similarity=0.158 Sum_probs=97.4
Q ss_pred hhhhhhcCCCChHHHHHHHHHHHHHHhH--CCC---Cch-hhHHHHHhhcCC-CChhHHHHHHHHHHHHHhcCCcchh--
Q psy11028 2 LGYFIYLTSTKPYLRKKAVLMMYKVFLK--FPD---ALR-PAFPRLKEKLED-PDSGVQSAAVNVVCELARKNPKNYL-- 72 (136)
Q Consensus 2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~--~P~---~v~-~~~~~l~~lL~D-~d~~V~~aal~l~~~l~~~~p~~~~-- 72 (136)
.|+.+.++++++-.+..|+-++.|+.-+ +|. +++ ..++.|.++|.+ .++.+...|..++..|+..+++.-.
T Consensus 60 ~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~v 139 (510)
T 3ul1_B 60 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV 139 (510)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 4677889999999999999999999744 442 344 368999999975 4688999999999999988876433
Q ss_pred ---hhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHhh-----hHHHHHHHHhccc
Q psy11028 73 ---SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKK-----LIEPLTNLIHRII 124 (136)
Q Consensus 73 ---~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~~-----l~e~l~~iL~~~~ 124 (136)
..+|.|++.|+. +++-++-..+..|+.++.+.+...+. .++.+..+|+..+
T Consensus 140 v~~GaIp~Lv~lL~s-~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~ 198 (510)
T 3ul1_B 140 VDGGAIPAFISLLAS-PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD 198 (510)
T ss_dssp HHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSC
T ss_pred HHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhcc
Confidence 359999999986 89999999999999999877665443 4667888887544
No 32
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=97.34 E-value=0.0018 Score=52.63 Aligned_cols=122 Identities=14% Similarity=0.087 Sum_probs=95.0
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCC--chhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh-----hhHH
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDA--LRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL-----SLAP 76 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~--v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~-----~lvp 76 (136)
+.++++++++.+|+.|+-++..+.+..|.. ....++.+.++|.+.|+.|...++..+..++..+++... ..+|
T Consensus 232 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~ 311 (529)
T 1jdh_A 232 LGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 311 (529)
T ss_dssp HHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHH
T ss_pred HHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChH
Confidence 456778889999999999999998876543 345789999999999999999999999999887764322 3589
Q ss_pred HHHHHhccC-CChhHHHHHHHHhhhcCCCChHH--------HhhhHHHHHHHHhccch
Q psy11028 77 VFFKLMTTS-SNNWMLIKIIKLFGALTPLEPRL--------GKKLIEPLTNLIHRIIS 125 (136)
Q Consensus 77 ~lv~iL~~v-~~pWlqikiLk~L~~l~~~e~~~--------~~~l~e~l~~iL~~~~s 125 (136)
.++++|... .++-.+...++.|+.++..++.. ....++.+.++|++.+.
T Consensus 312 ~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~ 369 (529)
T 1jdh_A 312 ALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSH 369 (529)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCC
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccc
Confidence 999999863 34788899999999998754321 12456778888877654
No 33
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.34 E-value=0.002 Score=56.32 Aligned_cols=100 Identities=11% Similarity=0.168 Sum_probs=77.3
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHC-CCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch---------hh
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKF-PDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY---------LS 73 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~-P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~---------~~ 73 (136)
+.+.|.++++.||++|+.|+..+.+.+ |+.-+++.+.+.+.+.+.|+.+.-+++..+..+++..|+.+ ..
T Consensus 95 ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~ 174 (852)
T 4fdd_A 95 CLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNI 174 (852)
T ss_dssp HHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHH
Confidence 456688999999999999999999886 45556688999999999999999999999999999877643 34
Q ss_pred hHHHHHHHhccCCChhHHHHHHHHhhhcCCC
Q psy11028 74 LAPVFFKLMTTSSNNWMLIKIIKLFGALTPL 104 (136)
Q Consensus 74 lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~ 104 (136)
++|.+.+.++. +++=.+...++.|..+...
T Consensus 175 il~~l~~~l~~-~~~~vR~~A~~aL~~~~~~ 204 (852)
T 4fdd_A 175 MIPKFLQFFKH-SSPKIRSHAVACVNQFIIS 204 (852)
T ss_dssp HHHHHTTTTTC-SSHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHHHhc
Confidence 56666666653 4555666666666655543
No 34
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=97.27 E-value=0.0017 Score=53.44 Aligned_cols=119 Identities=17% Similarity=0.178 Sum_probs=95.3
Q ss_pred hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCc----h-hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh----
Q psy11028 2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDAL----R-PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL---- 72 (136)
Q Consensus 2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v----~-~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~---- 72 (136)
+.+.++|+++++.++..|+.++.++...+++.- + ..++.+.++|.+.++.+.-.|+..+..++..+++.-.
T Consensus 5 ~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~ 84 (457)
T 1xm9_A 5 PKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRR 84 (457)
T ss_dssp HHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 456788999999999999999999987776532 2 3689999999999999999999999999987665322
Q ss_pred -hhHHHHHHHhccCCChhHHHHHHHHhhhcCCCC-hH--HHhhhHHHHHHHH
Q psy11028 73 -SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLE-PR--LGKKLIEPLTNLI 120 (136)
Q Consensus 73 -~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e-~~--~~~~l~e~l~~iL 120 (136)
..+|.|+++|+..+++=.|-.....|..++..+ .+ ..+..++.+.++|
T Consensus 85 ~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll 136 (457)
T 1xm9_A 85 QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRV 136 (457)
T ss_dssp TTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHH
Confidence 359999999996678999999999998887653 22 2225677777777
No 35
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.17 E-value=0.0051 Score=47.01 Aligned_cols=82 Identities=12% Similarity=0.045 Sum_probs=65.4
Q ss_pred hhhhhcCCCChHHHHHHHHHHHH-HHhHCCCCc--h----hhHHHHHhhc-CCCChhHHHHHHHHHHHHHhcCC-cch--
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYK-VFLKFPDAL--R----PAFPRLKEKL-EDPDSGVQSAAVNVVCELARKNP-KNY-- 71 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~r-l~~~~P~~v--~----~~~~~l~~lL-~D~d~~V~~aal~l~~~l~~~~p-~~~-- 71 (136)
+....+++++..-||-|..++.. +...+|++. . .+++.+.+.+ +|+|+.|..+|+..+..+++.-. ..|
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 44567789999999999999999 998888776 2 3577888999 89999999999999999987443 223
Q ss_pred ---hhhHHHHHHHhcc
Q psy11028 72 ---LSLAPVFFKLMTT 84 (136)
Q Consensus 72 ---~~lvp~lv~iL~~ 84 (136)
..++|.++..++.
T Consensus 100 ~y~~~llp~ll~~l~d 115 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKE 115 (249)
T ss_dssp HHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHcC
Confidence 3467788887774
No 36
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.16 E-value=0.0014 Score=44.71 Aligned_cols=106 Identities=11% Similarity=0.132 Sum_probs=67.8
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHh
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM 82 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL 82 (136)
.+..+|+++++.+|..|+.++.++- + ..++.+.++|.|+|+.|-.+++..+-.+.. ...++.+...|
T Consensus 16 ~l~~~L~~~~~~vR~~A~~~L~~~~--~-----~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------~~a~~~L~~~L 82 (131)
T 1te4_A 16 PRGSHMADENKWVRRDVSTALSRMG--D-----EAFEPLLESLSNEDWRIRGAAAWIIGNFQD------ERAVEPLIKLL 82 (131)
T ss_dssp -----CCSSCCCSSSSCCSSTTSCS--S-----TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS------HHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhC--c-----hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHH
Confidence 3556778888888888887766431 1 124677788888888888777766554431 24577777777
Q ss_pred ccCCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccchhhh
Q psy11028 83 TTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLSC 128 (136)
Q Consensus 83 ~~v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~s~sv 128 (136)
.. ++|+........|+.++.. ...+.+.+.++..+..+-
T Consensus 83 ~d-~~~~VR~~A~~aL~~~~~~------~a~~~L~~~l~d~~~~vr 121 (131)
T 1te4_A 83 ED-DSGFVRSGAARSLEQIGGE------RVRAAMEKLAETGTGFAR 121 (131)
T ss_dssp HH-CCTHHHHHHHHHHHHHCSH------HHHHHHHHHTTSCCTHHH
T ss_pred cC-CCHHHHHHHHHHHHHhCcH------HHHHHHHHHHhCCCHHHH
Confidence 65 6888888888888888732 355666666766555443
No 37
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.16 E-value=0.002 Score=56.22 Aligned_cols=128 Identities=12% Similarity=0.074 Sum_probs=91.6
Q ss_pred hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCc---------hhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh
Q psy11028 2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDAL---------RPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL 72 (136)
Q Consensus 2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v---------~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~ 72 (136)
+++.++++++++.+|..|..|+.++++..|+.. ...++.+.+.+.|.++.|-.+|+..+..+....++.+.
T Consensus 131 ~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~ 210 (852)
T 4fdd_A 131 PKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALM 210 (852)
T ss_dssp HHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHH
Confidence 356678899999999999999999999988763 34678889999999999999999999888877665443
Q ss_pred ----hhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHH----HhhhHHHHHHHHhccchhhhhh
Q psy11028 73 ----SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRL----GKKLIEPLTNLIHRIISLSCWT 130 (136)
Q Consensus 73 ----~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~----~~~l~e~l~~iL~~~~s~sv~~ 130 (136)
.+++.+...+.. +++-.+...++.|..+....++. -+.+.+.+...++..+..+...
T Consensus 211 ~~~~~~l~~l~~~~~d-~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~ 275 (852)
T 4fdd_A 211 LHIDSFIENLFALAGD-EEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALE 275 (852)
T ss_dssp TSHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHH
Confidence 455555555544 67777777777777666544432 2345556666666555444333
No 38
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=97.14 E-value=0.0036 Score=51.20 Aligned_cols=120 Identities=13% Similarity=0.117 Sum_probs=71.7
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHhHC-CCCc-hhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCc------chhhhHH
Q psy11028 5 FIYLTSTKPYLRKKAVLMMYKVFLKF-PDAL-RPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK------NYLSLAP 76 (136)
Q Consensus 5 ~klL~~s~~~VRKKA~l~~~rl~~~~-P~~v-~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~------~~~~lvp 76 (136)
.++++++++.||+.|+.++..+.... ++.. +.+++.+.+++.|.++.|-.++...+-.++..-+. .+..++|
T Consensus 248 ~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p 327 (588)
T 1b3u_A 248 RQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILP 327 (588)
T ss_dssp HHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHH
T ss_pred HHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHH
Confidence 34556777777777777777777643 2222 23567777777788888877777777777765543 2345666
Q ss_pred HHHHHhccCCChhHHHHHHHHhhhcCC--CChHHHhhhHHHHHHHHhccch
Q psy11028 77 VFFKLMTTSSNNWMLIKIIKLFGALTP--LEPRLGKKLIEPLTNLIHRIIS 125 (136)
Q Consensus 77 ~lv~iL~~v~~pWlqikiLk~L~~l~~--~e~~~~~~l~e~l~~iL~~~~s 125 (136)
.+...+.+ +++...-...+.|..+++ ++......+.+.+.+.++..+.
T Consensus 328 ~l~~~l~d-~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~ 377 (588)
T 1b3u_A 328 CIKELVSD-ANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECP 377 (588)
T ss_dssp HHHHHHTC-SCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCH
T ss_pred HHHHHhcC-CCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCch
Confidence 66666654 455555555555555542 1111223455556666655443
No 39
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.13 E-value=0.0026 Score=52.97 Aligned_cols=124 Identities=10% Similarity=0.078 Sum_probs=98.7
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch-----hh
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY-----LS 73 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~-----~~ 73 (136)
+.++|+++++.++.-|+.|+..+....++..+ ..++.+.++|.+.++.|...++..+..++..++... ..
T Consensus 256 L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g 335 (529)
T 3tpo_A 256 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAG 335 (529)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcc
Confidence 56788999999999999999999887665433 368999999999999999999999999988776532 24
Q ss_pred hHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHH-----hhhHHHHHHHHhccchhhh
Q psy11028 74 LAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLG-----KKLIEPLTNLIHRIISLSC 128 (136)
Q Consensus 74 lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~-----~~l~e~l~~iL~~~~s~sv 128 (136)
.++.++.+|.. +++-.+.....+|+.++..++... ..+++.+.++|++.+..+.
T Consensus 336 ~l~~L~~LL~~-~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~ 394 (529)
T 3tpo_A 336 ALAVFPSLLTN-PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ 394 (529)
T ss_dssp GGGGHHHHTTC-SSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHH
T ss_pred cHHHHHHHHcC-CCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHH
Confidence 68889999876 789999999999998887665432 3466778888877765443
No 40
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=97.07 E-value=0.003 Score=51.70 Aligned_cols=122 Identities=15% Similarity=0.150 Sum_probs=84.3
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCC--CchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCC-cc-hhhhHHHHH
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPD--ALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNP-KN-YLSLAPVFF 79 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~--~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p-~~-~~~lvp~lv 79 (136)
+.++|+++++.||..|+.++..+....++ ..+.+.+.+.+++.|++..|-.+++..+..++..-+ +. ...+.|.+.
T Consensus 446 l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~ 525 (588)
T 1b3u_A 446 CMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVL 525 (588)
T ss_dssp HHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45667888889999999998888876443 234467778888888888888888888888876432 22 245777777
Q ss_pred HHhccCCChhHHHHHHHHhhhcCC-CChH-HHhhhHHHHHHHHhccchh
Q psy11028 80 KLMTTSSNNWMLIKIIKLFGALTP-LEPR-LGKKLIEPLTNLIHRIISL 126 (136)
Q Consensus 80 ~iL~~v~~pWlqikiLk~L~~l~~-~e~~-~~~~l~e~l~~iL~~~~s~ 126 (136)
+.+.. ++|..+...++.|+.+.. ..+. ....+.+.+.++++..+..
T Consensus 526 ~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l~~l~~d~d~~ 573 (588)
T 1b3u_A 526 RMAGD-PVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVD 573 (588)
T ss_dssp HGGGC-SCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCSSHH
T ss_pred hhCCC-CCchHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCchh
Confidence 77766 688888888988887764 2222 2245666666655544443
No 41
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.06 E-value=0.0036 Score=56.72 Aligned_cols=121 Identities=7% Similarity=0.051 Sum_probs=90.1
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCC-CchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCc----------chh
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPD-ALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK----------NYL 72 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~-~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~----------~~~ 72 (136)
+.+.|.++++.+|+-|+.|+..+....++ .++.+++.+.+.|.|.++.|-.++...+..++..-+. .|.
T Consensus 53 Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~ 132 (1230)
T 1u6g_C 53 ILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCK 132 (1230)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHH
Confidence 56677899999999999999999987765 3345678888888999999988888888888876543 377
Q ss_pred hhHHHHHHHhccCCChhHHHHHHHHhhhcCC-----CChHHHhhhHHHHHHHHhccch
Q psy11028 73 SLAPVFFKLMTTSSNNWMLIKIIKLFGALTP-----LEPRLGKKLIEPLTNLIHRIIS 125 (136)
Q Consensus 73 ~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~-----~e~~~~~~l~e~l~~iL~~~~s 125 (136)
.++|.+.+.+.+.+++-.+...+.+|..+.. ..| ....+.+.+.+.|++.++
T Consensus 133 ~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~-~~~~ll~~l~~~L~~~~~ 189 (1230)
T 1u6g_C 133 KITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN-FHPSILTCLLPQLTSPRL 189 (1230)
T ss_dssp HHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT-THHHHHHHHGGGGGCSSH
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHHcCCcH
Confidence 8999999999755677777777877776541 112 234566666666665543
No 42
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.06 E-value=0.0055 Score=48.02 Aligned_cols=116 Identities=19% Similarity=0.282 Sum_probs=94.2
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCC-----chhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCC---cchhhhH
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDA-----LRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNP---KNYLSLA 75 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~-----v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p---~~~~~lv 75 (136)
+..+|++.++.+|=.|..++=.+...-|+. ++.+++.+.+++.++|-.|..-|+-++-.+....| +.|..+.
T Consensus 38 L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~ 117 (265)
T 3b2a_A 38 ILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLKAA 117 (265)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHHH
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 467889999999999999999999886654 45688999999999999999999999999998765 6899999
Q ss_pred HHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhc
Q psy11028 76 PVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHR 122 (136)
Q Consensus 76 p~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~ 122 (136)
..+.++++ .+++-++..+...++.+.+-++ ..++.+.+..++.+
T Consensus 118 ~aL~dlik-~~~~il~~eaae~Lgklkv~~~--~~~V~~~l~sLl~S 161 (265)
T 3b2a_A 118 KTLVSLLE-SPDDMMRIETIDVLSKLQPLED--SKLVRTYINELVVS 161 (265)
T ss_dssp HHHHHHTT-SCCHHHHHHHHHHHHHCCBSCC--CHHHHHHHHHHHTC
T ss_pred HHHHHHhc-CCCchHHHHHHHHhCcCCcccc--hHHHHHHHHHHHhC
Confidence 99999998 4777777777777777754433 45666666666633
No 43
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.03 E-value=0.0054 Score=46.86 Aligned_cols=124 Identities=11% Similarity=0.117 Sum_probs=92.0
Q ss_pred hhhhc-CCCChHHHHHHHHHHHHHHhHCC-CCch-h----hHHHHHhhcCCCChhHHHHHHHHHHHHHhc-CCcc----h
Q psy11028 4 YFIYL-TSTKPYLRKKAVLMMYKVFLKFP-DALR-P----AFPRLKEKLEDPDSGVQSAAVNVVCELARK-NPKN----Y 71 (136)
Q Consensus 4 V~klL-~~s~~~VRKKA~l~~~rl~~~~P-~~v~-~----~~~~l~~lL~D~d~~V~~aal~l~~~l~~~-~p~~----~ 71 (136)
+.+.+ +++++.||..|+.|+-.+...-. +.++ . ..+.+.+.+.|+.+.|..++...+..+++. +|.. .
T Consensus 65 L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l 144 (249)
T 2qk1_A 65 YGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRN 144 (249)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTT
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcH
Confidence 44566 79999999999999999997654 3344 3 567888899999999999999999888884 4432 3
Q ss_pred hhhHHHHHHHhccCCChhHHHHHHHHhhhcCCCCh-------HHH-hhhHHHHHHHHhccchhhh
Q psy11028 72 LSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEP-------RLG-KKLIEPLTNLIHRIISLSC 128 (136)
Q Consensus 72 ~~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~-------~~~-~~l~e~l~~iL~~~~s~sv 128 (136)
..+.+.+...|++ .+|-.+.-.++++..+....+ ..- ..+.+.+.+.+..+++.+=
T Consensus 145 ~~ll~~l~~~l~~-k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR 208 (249)
T 2qk1_A 145 EDMLKDILEHMKH-KTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIR 208 (249)
T ss_dssp HHHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHH
T ss_pred HHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 3678888888876 467677777888876652111 223 6788999999988876543
No 44
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=96.98 E-value=0.0097 Score=50.55 Aligned_cols=122 Identities=14% Similarity=0.092 Sum_probs=95.6
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCC--chhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh-----hhHH
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDA--LRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL-----SLAP 76 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~--v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~-----~lvp 76 (136)
+.+++.++++.+|+.|+-++..+.+..++. ....++.+.++|.+.|+.|...+...+..++..+++... ..++
T Consensus 229 L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~ 308 (644)
T 2z6h_A 229 LGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 308 (644)
T ss_dssp HHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHH
Confidence 456778889999999999999999876543 345789999999999999999999999999987664221 3689
Q ss_pred HHHHHhccCCC-hhHHHHHHHHhhhcCCCChH---H-----HhhhHHHHHHHHhccch
Q psy11028 77 VFFKLMTTSSN-NWMLIKIIKLFGALTPLEPR---L-----GKKLIEPLTNLIHRIIS 125 (136)
Q Consensus 77 ~lv~iL~~v~~-pWlqikiLk~L~~l~~~e~~---~-----~~~l~e~l~~iL~~~~s 125 (136)
.++++|...++ +-.+...++.|+.++..++. . ....++.+.++|++.+.
T Consensus 309 ~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~ 366 (644)
T 2z6h_A 309 ALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSH 366 (644)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCC
T ss_pred HHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCc
Confidence 99999986444 78899999999999864331 1 13467888888887653
No 45
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=96.97 E-value=0.012 Score=53.45 Aligned_cols=119 Identities=18% Similarity=0.207 Sum_probs=87.5
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCC----------chhhHHHHHhhcCC-CChhHHHHHHHHHHHHHhcCCcchh
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDA----------LRPAFPRLKEKLED-PDSGVQSAAVNVVCELARKNPKNYL 72 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~----------v~~~~~~l~~lL~D-~d~~V~~aal~l~~~l~~~~p~~~~ 72 (136)
+.+.+.+.++.||..|+.|+..+....++- .+.+++.+.+.+.| .++.+..+++..+.++++..++.+.
T Consensus 91 Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~ 170 (1230)
T 1u6g_C 91 LCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLV 170 (1230)
T ss_dssp HHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCT
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHH
Confidence 455678899999999999999999887654 44578888889985 8899999999999999988776544
Q ss_pred hhHHH----HHHHhccCCChhHHHHHHHHhhhcCCCCh-HHHhhhHHHHHHHHhcc
Q psy11028 73 SLAPV----FFKLMTTSSNNWMLIKIIKLFGALTPLEP-RLGKKLIEPLTNLIHRI 123 (136)
Q Consensus 73 ~lvp~----lv~iL~~v~~pWlqikiLk~L~~l~~~e~-~~~~~l~e~l~~iL~~~ 123 (136)
+..+. +...|.. ++++.+.+.++.++.+...-+ .....+.+.+.+.|.+.
T Consensus 171 ~~~~~ll~~l~~~L~~-~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~ 225 (1230)
T 1u6g_C 171 NFHPSILTCLLPQLTS-PRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKN 225 (1230)
T ss_dssp TTHHHHHHHHGGGGGC-SSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccC
Confidence 44444 4444444 789999999999998875432 23345666666666554
No 46
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=96.94 E-value=0.014 Score=47.20 Aligned_cols=123 Identities=11% Similarity=0.076 Sum_probs=89.4
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch-----h
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY-----L 72 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~-----~ 72 (136)
.+.++|+++++.+|..|+.++..+...+++.-. ..++.+.++|.+.++.+...+...+..++..+++.- .
T Consensus 105 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~ 184 (529)
T 1jdh_A 105 ALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS 184 (529)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHC
Confidence 456788999999999999999999998776432 468999999999999999999888888887665432 2
Q ss_pred hhHHHHHHHhccCCChhHHHHHHHHhhhcCCCCh-H---HHhhhHHHHHHHHhccch
Q psy11028 73 SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEP-R---LGKKLIEPLTNLIHRIIS 125 (136)
Q Consensus 73 ~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~-~---~~~~l~e~l~~iL~~~~s 125 (136)
..+|.++++|+...++-.+-...++|..++..+. + ......+.+.++++..+.
T Consensus 185 ~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~ 241 (529)
T 1jdh_A 185 GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQ 241 (529)
T ss_dssp THHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCH
T ss_pred CCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCCh
Confidence 4589999999876666666666777766664321 1 112345566666655543
No 47
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=96.88 E-value=0.017 Score=49.07 Aligned_cols=122 Identities=11% Similarity=0.056 Sum_probs=88.3
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCc-----hhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch-----h
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDAL-----RPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY-----L 72 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v-----~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~-----~ 72 (136)
-+.++|+++++.+|+.|+.++..+...+++.. ...++.+.++|.+.++.+..+++..+..++..+++.- .
T Consensus 102 ~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~ 181 (644)
T 2z6h_A 102 ALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS 181 (644)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHc
Confidence 35678899999999999999999998876543 2468999999999999999999889999987665421 2
Q ss_pred hhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHh-----hhHHHHHHHHhccch
Q psy11028 73 SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGK-----KLIEPLTNLIHRIIS 125 (136)
Q Consensus 73 ~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~-----~l~e~l~~iL~~~~s 125 (136)
..++.++++|++...+-.+-...++|..++... +... ..++.+.++++..+.
T Consensus 182 g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~-~~~~~l~~~g~l~~L~~ll~~~~~ 238 (644)
T 2z6h_A 182 GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHLTDPSQ 238 (644)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCT-THHHHHHHTTHHHHHHTTTTCSCH
T ss_pred CChHHHHHHHHcCChHHHHHHHHHHHHHHhcCc-ccHHHHHHCCCHHHHHHHHhcCCH
Confidence 458999999987655555556666666666422 2222 235556666655443
No 48
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=96.76 E-value=0.012 Score=51.61 Aligned_cols=122 Identities=14% Similarity=0.087 Sum_probs=94.4
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCC--chhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch-----hhhHH
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDA--LRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY-----LSLAP 76 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~--v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~-----~~lvp 76 (136)
+..+++++++.+++.|+-++..+.+..+.. .+..++.+.++|.+.|+.|..+++..+..++..+++.. ...++
T Consensus 365 Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~ 444 (780)
T 2z6g_A 365 LGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 444 (780)
T ss_dssp HGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHH
T ss_pred HHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHH
Confidence 456778889999999999999999876543 44578999999999999999999999999988765432 24689
Q ss_pred HHHHHhccCCC-hhHHHHHHHHhhhcCCCChHH--------HhhhHHHHHHHHhccch
Q psy11028 77 VFFKLMTTSSN-NWMLIKIIKLFGALTPLEPRL--------GKKLIEPLTNLIHRIIS 125 (136)
Q Consensus 77 ~lv~iL~~v~~-pWlqikiLk~L~~l~~~e~~~--------~~~l~e~l~~iL~~~~s 125 (136)
.+++.|....+ +=.+...++.|+.++..++.. ....++.+.++|++.+.
T Consensus 445 ~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~ 502 (780)
T 2z6g_A 445 ALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSH 502 (780)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCC
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCCh
Confidence 99999986433 378889999999998644321 23456778888877664
No 49
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=96.73 E-value=0.004 Score=51.75 Aligned_cols=123 Identities=11% Similarity=0.084 Sum_probs=94.9
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh-----h
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL-----S 73 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~-----~ 73 (136)
+.++|.++++.++..|+.|+..+....++..+ ...+.+.++|.+.+..|...++..+..++..++.... .
T Consensus 237 L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g 316 (510)
T 3ul1_B 237 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAG 316 (510)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhcc
Confidence 56788999999999999999999876665432 3689999999999999999999999999887765322 3
Q ss_pred hHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHH-----hhhHHHHHHHHhccchhh
Q psy11028 74 LAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLG-----KKLIEPLTNLIHRIISLS 127 (136)
Q Consensus 74 lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~-----~~l~e~l~~iL~~~~s~s 127 (136)
.+|.++.+|+. +++-.+.....+|+.++..++... ..+++.+.+++++.+..+
T Consensus 317 ~l~~L~~LL~~-~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v 374 (510)
T 3ul1_B 317 ALAVFPSLLTN-PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT 374 (510)
T ss_dssp GGGGCC-CTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHH
T ss_pred chHHHHHHhcC-CCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHH
Confidence 56777777765 788889999999999887665433 345677888887766543
No 50
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=96.72 E-value=0.00047 Score=47.17 Aligned_cols=85 Identities=16% Similarity=0.113 Sum_probs=67.9
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHh
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM 82 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL 82 (136)
.+.++|+++++.||..|+.++-++-. +..++.+.++|.|+|+.|-.+++..+-.+.. ...+|.+...|
T Consensus 46 ~L~~~L~d~~~~vR~~A~~aL~~~~~------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~------~~a~~~L~~~l 113 (131)
T 1te4_A 46 PLLESLSNEDWRIRGAAAWIIGNFQD------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG------ERVRAAMEKLA 113 (131)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHGGGCS------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS------HHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------HHHHHHHHHHH
Confidence 45678899999999999999876542 2457788889999999999999888877642 24688888888
Q ss_pred ccCCChhHHHHHHHHhhh
Q psy11028 83 TTSSNNWMLIKIIKLFGA 100 (136)
Q Consensus 83 ~~v~~pWlqikiLk~L~~ 100 (136)
+. ++||.+....+.|..
T Consensus 114 ~d-~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 114 ET-GTGFARKVAVNYLET 130 (131)
T ss_dssp TS-CCTHHHHHHHHHGGG
T ss_pred hC-CCHHHHHHHHHHHHh
Confidence 75 789998888877754
No 51
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=96.71 E-value=0.014 Score=44.72 Aligned_cols=104 Identities=14% Similarity=0.118 Sum_probs=83.5
Q ss_pred hhhhhhcCCCCh--HHHHHHHHHHHHHHhHCCCCc----h-hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh--
Q psy11028 2 LGYFIYLTSTKP--YLRKKAVLMMYKVFLKFPDAL----R-PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL-- 72 (136)
Q Consensus 2 ~~V~klL~~s~~--~VRKKA~l~~~rl~~~~P~~v----~-~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~-- 72 (136)
+...++|+++++ -++.-|+.++..+...+++.- + ..++.+.++|...++.+.-.|+..+..++..+++.-.
T Consensus 11 ~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I 90 (233)
T 3tt9_A 11 ERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEV 90 (233)
T ss_dssp HHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 356788888888 899999999988888776532 2 3689999999999999999999999999987765322
Q ss_pred ---hhHHHHHHHhccCCChhHHHHHHHHhhhcCCCC
Q psy11028 73 ---SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLE 105 (136)
Q Consensus 73 ---~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e 105 (136)
.-+|.++++|+..+++-.|-.....|..|...+
T Consensus 91 ~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~ 126 (233)
T 3tt9_A 91 AELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND 126 (233)
T ss_dssp HHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG
T ss_pred HHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh
Confidence 359999999986677888888877777777544
No 52
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=96.67 E-value=0.021 Score=47.43 Aligned_cols=122 Identities=15% Similarity=0.164 Sum_probs=94.7
Q ss_pred hhhhhhcCCCChHHHHHHHHHHHHHHhH--CCC---Cch-hhHHHHHhhcC-CCChhHHHHHHHHHHHHHhcCCcchh--
Q psy11028 2 LGYFIYLTSTKPYLRKKAVLMMYKVFLK--FPD---ALR-PAFPRLKEKLE-DPDSGVQSAAVNVVCELARKNPKNYL-- 72 (136)
Q Consensus 2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~--~P~---~v~-~~~~~l~~lL~-D~d~~V~~aal~l~~~l~~~~p~~~~-- 72 (136)
.++.+.++++++-.+..|+-++.|+.-. +|. .++ ..++.+.++|. +.++.+...|..++..++..+++.-.
T Consensus 79 ~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~v 158 (529)
T 3tpo_A 79 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV 158 (529)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3567788999999999999999998744 332 233 36899999996 45688999999999999988876432
Q ss_pred ---hhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHhh-----hHHHHHHHHhccc
Q psy11028 73 ---SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKK-----LIEPLTNLIHRII 124 (136)
Q Consensus 73 ---~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~~-----l~e~l~~iL~~~~ 124 (136)
..+|.|+.+|.. +++-.+-..+..|+.++.+++..... .++.+..+|+..+
T Consensus 159 v~~Gaip~Lv~LL~s-~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~ 217 (529)
T 3tpo_A 159 VDGGAIPAFISLLAS-PHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPD 217 (529)
T ss_dssp HHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSC
T ss_pred HHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccc
Confidence 468999998876 78999999999999998877765444 3567777776544
No 53
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=96.44 E-value=0.026 Score=48.36 Aligned_cols=100 Identities=8% Similarity=0.059 Sum_probs=72.4
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHCC------CCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcC----Ccc--
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFP------DALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN----PKN-- 70 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P------~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~----p~~-- 70 (136)
.+.+.++++++.||..|+.++-++....+ +.++..++.+.+.|.|. +.|-.++...+..+++.- ++.
T Consensus 415 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~ 493 (861)
T 2bpt_A 415 SILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIY 493 (861)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGG
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhH
Confidence 35667789999999999999999987743 34556778888888886 889988888888887742 232
Q ss_pred --hhhhHHHHHHHhccC-CChhHHHHHHHHhhhcCC
Q psy11028 71 --YLSLAPVFFKLMTTS-SNNWMLIKIIKLFGALTP 103 (136)
Q Consensus 71 --~~~lvp~lv~iL~~v-~~pWlqikiLk~L~~l~~ 103 (136)
+..+++.+.+.+... .++-.+...++.++.+..
T Consensus 494 ~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~ 529 (861)
T 2bpt_A 494 NFYPALVDGLIGAANRIDNEFNARASAFSALTTMVE 529 (861)
T ss_dssp GGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHH
Confidence 345566777777653 336677777777776653
No 54
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=96.41 E-value=0.0066 Score=48.08 Aligned_cols=112 Identities=13% Similarity=0.109 Sum_probs=81.3
Q ss_pred CChHHHHHHHHHHHHHHhHC------------CCCc----hhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcC-Cc-chh
Q psy11028 11 TKPYLRKKAVLMMYKVFLKF------------PDAL----RPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN-PK-NYL 72 (136)
Q Consensus 11 s~~~VRKKA~l~~~rl~~~~------------P~~v----~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~-p~-~~~ 72 (136)
.++.+|+-|+..+-+++..+ +.+- +...+.+.+.|.+.++.| ..+..++.+++..+ |+ .|.
T Consensus 49 ~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~ 127 (462)
T 1ibr_B 49 NSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWP 127 (462)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCT
T ss_pred CChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccH
Confidence 37899999999999987543 2211 224566778888999999 88888899998875 64 799
Q ss_pred hhHHHHHHHhccCC-ChhHHHHHHHHhhhcCCCC-----hHHHhhhHHHHHHHHhcc
Q psy11028 73 SLAPVFFKLMTTSS-NNWMLIKIIKLFGALTPLE-----PRLGKKLIEPLTNLIHRI 123 (136)
Q Consensus 73 ~lvp~lv~iL~~v~-~pWlqikiLk~L~~l~~~e-----~~~~~~l~e~l~~iL~~~ 123 (136)
.++|.++..+.+-. +|-.+--.+.+|+.+...- ......+.+.+.+.++..
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~ 184 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKE 184 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCC
Confidence 99999999998732 6766667777777665311 223445777777777766
No 55
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=96.32 E-value=0.0091 Score=52.44 Aligned_cols=127 Identities=15% Similarity=0.136 Sum_probs=86.5
Q ss_pred hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcc-----hhhhHH
Q psy11028 2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKN-----YLSLAP 76 (136)
Q Consensus 2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~-----~~~lvp 76 (136)
+++.+.|.++++.+|+.|+-.+.+. ..+++....++.+.++|.+.|+.|--.|+..+..++..++.. ....++
T Consensus 118 ~~lv~~L~~~~~~~r~~a~~~l~~~--~~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~ 195 (780)
T 2z6g_A 118 PTNVQRLAEPSQMLKHAVVNLINYQ--DDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVS 195 (780)
T ss_dssp --------CCSCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHH
T ss_pred HHHHHHhcCccHHHHHHHHHHHHhh--hHHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHH
Confidence 3456677889999998776665433 223444567899999999999999999999999998865321 125799
Q ss_pred HHHHHhccCCChhHHHHHHHHhhhcCCCChH----HHhhhHHHHHHHHhccchhhhhh
Q psy11028 77 VFFKLMTTSSNNWMLIKIIKLFGALTPLEPR----LGKKLIEPLTNLIHRIISLSCWT 130 (136)
Q Consensus 77 ~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~----~~~~l~e~l~~iL~~~~s~sv~~ 130 (136)
.+++.|++-.++-.+....+.|..+...+.. .....++.+.++|++.+......
T Consensus 196 ~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~ 253 (780)
T 2z6g_A 196 AIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFH 253 (780)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHH
Confidence 9999998767898999999988888754321 12246677888887766544333
No 56
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=96.30 E-value=0.037 Score=47.45 Aligned_cols=98 Identities=13% Similarity=0.144 Sum_probs=68.5
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHCCC------CchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcC---------
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPD------ALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN--------- 67 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~------~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~--------- 67 (136)
.+.+.|+++++.||..|+.++-++....++ .++..++.+.+.|.|. +.|-.+++..+..++...
T Consensus 412 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~ 490 (876)
T 1qgr_A 412 TLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADD 490 (876)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTS
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccc
Confidence 356778999999999999999999998654 3445678888888885 888888888887776541
Q ss_pred -----Cc----chhhhHHHHHHHhccCC--ChhHHHHHHHHhhhc
Q psy11028 68 -----PK----NYLSLAPVFFKLMTTSS--NNWMLIKIIKLFGAL 101 (136)
Q Consensus 68 -----p~----~~~~lvp~lv~iL~~v~--~pWlqikiLk~L~~l 101 (136)
++ .+..++|.+.+.+.... ++=+....++.++.+
T Consensus 491 ~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l 535 (876)
T 1qgr_A 491 QEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEI 535 (876)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHH
T ss_pred cccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHH
Confidence 11 23456777777776532 223444555555544
No 57
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=96.30 E-value=0.037 Score=43.37 Aligned_cols=94 Identities=17% Similarity=0.178 Sum_probs=78.7
Q ss_pred hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCC-----cchhhhHHHHHHHhccCCChhHHHHHHHHhhhcC---CCChH
Q psy11028 36 PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNP-----KNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALT---PLEPR 107 (136)
Q Consensus 36 ~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p-----~~~~~lvp~lv~iL~~v~~pWlqikiLk~L~~l~---~~e~~ 107 (136)
+....+.++|.|+|+-|...++.++-++.+.-| ..+..+.|.+++++++ .|.=.-++-+|.+.++- |.+++
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~-~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQ-ENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCS-TTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHcCCCCCHH
Confidence 355668899999999999999999999998855 3677899999999977 89999999999999884 55578
Q ss_pred HHhhhHHHHHHHHhccchhhhhh
Q psy11028 108 LGKKLIEPLTNLIHRIISLSCWT 130 (136)
Q Consensus 108 ~~~~l~e~l~~iL~~~~s~sv~~ 130 (136)
...++.+.+.+++.+.+-....+
T Consensus 112 ~y~Kl~~aL~dlik~~~~il~~e 134 (265)
T 3b2a_A 112 TFLKAAKTLVSLLESPDDMMRIE 134 (265)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCchHHHH
Confidence 88999999999998666544433
No 58
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=96.02 E-value=0.13 Score=44.08 Aligned_cols=98 Identities=8% Similarity=0.092 Sum_probs=72.4
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHC-CC-CchhhHHHHHhhcCCC-ChhHHHHHHHHHHHHHhcCCcc---hh----h
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKF-PD-ALRPAFPRLKEKLEDP-DSGVQSAAVNVVCELARKNPKN---YL----S 73 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~-P~-~v~~~~~~l~~lL~D~-d~~V~~aal~l~~~l~~~~p~~---~~----~ 73 (136)
+...|.+.++.||++++.++..+.+.+ |+ .-+++++.+.+.+.+. |+.+..+++.++..+++..+.. +. .
T Consensus 100 ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ 179 (861)
T 2bpt_A 100 ALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNN 179 (861)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHH
T ss_pred HHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHH
Confidence 445678889999999999999999874 63 5567889999999988 9999999999999999864322 23 3
Q ss_pred hHHHHHHHhccC-CChhHHHHHHHHhhhc
Q psy11028 74 LAPVFFKLMTTS-SNNWMLIKIIKLFGAL 101 (136)
Q Consensus 74 lvp~lv~iL~~v-~~pWlqikiLk~L~~l 101 (136)
+++.+...+... +++=.+...++.|..+
T Consensus 180 ll~~l~~~l~~~~~~~~vr~~al~~l~~~ 208 (861)
T 2bpt_A 180 ILIAIVQGAQSTETSKAVRLAALNALADS 208 (861)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Confidence 455555555542 2566666677776653
No 59
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=95.94 E-value=0.036 Score=42.42 Aligned_cols=102 Identities=12% Similarity=0.145 Sum_probs=71.6
Q ss_pred CChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhccCCChhH
Q psy11028 11 TKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWM 90 (136)
Q Consensus 11 s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~~v~~pWl 90 (136)
.+|-+|=--.-++=++-+-+|++..+.+..+..++.|+|-.==+++++.+-.+....++.--++.|.+..+|.. .|.-.
T Consensus 119 gd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~PfLprL~aLL~D-~deiV 197 (253)
T 2db0_A 119 GDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHD-GDEIV 197 (253)
T ss_dssp CSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGGGHHHHHGGGGC-SSHHH
T ss_pred CCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccCcchHHHHHHHcC-cchhh
Confidence 45666666666677777778887777777777777777777777777777777777777666777777777776 56666
Q ss_pred HHHHHHHhhhcCCCChHHHhhhH
Q psy11028 91 LIKIIKLFGALTPLEPRLGKKLI 113 (136)
Q Consensus 91 qikiLk~L~~l~~~e~~~~~~l~ 113 (136)
...-...|..++..+|+..+-+.
T Consensus 198 RaSaVEtL~~lA~~npklRkii~ 220 (253)
T 2db0_A 198 RASAVEALVHLATLNDKLRKVVI 220 (253)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCHHHHHHHH
Confidence 66667777777776665443333
No 60
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=95.85 E-value=0.055 Score=46.68 Aligned_cols=119 Identities=13% Similarity=0.157 Sum_probs=89.8
Q ss_pred hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCC----ch-hhHHHHHhhcCCCChhHHHHHHHHHHHHHhc-CCcc---hh
Q psy11028 2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDA----LR-PAFPRLKEKLEDPDSGVQSAAVNVVCELARK-NPKN---YL 72 (136)
Q Consensus 2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~----v~-~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~-~p~~---~~ 72 (136)
+.+.++|.++++-++..|+.++..+...+++. ++ ..++.|.++|...++.|.-.|+..+..|+.. +++. ..
T Consensus 51 ~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~ 130 (584)
T 3l6x_A 51 PEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIK 130 (584)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 34678889999999999999999998766652 23 3689999999999999999999999999974 4432 11
Q ss_pred --hhHHHHHHHhccCCChhHHHHHHHHhhhcCCCCh---HHHhhhHHHHHHHH
Q psy11028 73 --SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEP---RLGKKLIEPLTNLI 120 (136)
Q Consensus 73 --~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~---~~~~~l~e~l~~iL 120 (136)
.-+|.|+++|+..+++-+|-..-..|..|+..+. ...+.-++.+.+.+
T Consensus 131 ~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL 183 (584)
T 3l6x_A 131 NCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEV 183 (584)
T ss_dssp HTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHT
T ss_pred HcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHH
Confidence 3599999999976778888887778888876432 12233345555544
No 61
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=95.66 E-value=0.096 Score=42.88 Aligned_cols=119 Identities=11% Similarity=0.120 Sum_probs=88.8
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCc----h-hhHHHHHhhcC-CCChhHHHHHHHHHHHHHhcCCc---chhh
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDAL----R-PAFPRLKEKLE-DPDSGVQSAAVNVVCELARKNPK---NYLS 73 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v----~-~~~~~l~~lL~-D~d~~V~~aal~l~~~l~~~~p~---~~~~ 73 (136)
-..++|+++++.+++.|+-|+..+...+|+.- + ..++.+.++|. +.++.+.-.++..+..++..+.. ....
T Consensus 48 ~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g 127 (457)
T 1xm9_A 48 KLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIAD 127 (457)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhc
Confidence 35678899999999999999999988656532 2 36899999998 77999999999999999987321 1125
Q ss_pred hHHHHHHHhc--------cC-------CChhHHHHHHHHhhhcCCCChHHHh------hhHHHHHHHHhc
Q psy11028 74 LAPVFFKLMT--------TS-------SNNWMLIKIIKLFGALTPLEPRLGK------KLIEPLTNLIHR 122 (136)
Q Consensus 74 lvp~lv~iL~--------~v-------~~pWlqikiLk~L~~l~~~e~~~~~------~l~e~l~~iL~~ 122 (136)
.+|.++++|. +. .++=++......|..++.. ++..+ -.++.+.++|++
T Consensus 128 ~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~ 196 (457)
T 1xm9_A 128 ALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQN 196 (457)
T ss_dssp HHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHH
T ss_pred cHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHh
Confidence 7999999993 21 3455566888889999876 44332 456667888875
No 62
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=95.65 E-value=0.12 Score=41.53 Aligned_cols=124 Identities=12% Similarity=0.117 Sum_probs=89.1
Q ss_pred hhh-cCCCChHHHHHHHHHHHHHHhHCC----CCc--hhhHHHHHhhcCCCChh----HHHHHHHHHHHHHh---cCCcc
Q psy11028 5 FIY-LTSTKPYLRKKAVLMMYKVFLKFP----DAL--RPAFPRLKEKLEDPDSG----VQSAAVNVVCELAR---KNPKN 70 (136)
Q Consensus 5 ~kl-L~~s~~~VRKKA~l~~~rl~~~~P----~~v--~~~~~~l~~lL~D~d~~----V~~aal~l~~~l~~---~~p~~ 70 (136)
.++ ++++++.+++.|+-++.-+...++ ..+ ...++.+.++|.+.+.+ |.-.+...+..++. .+++.
T Consensus 176 v~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~ 255 (354)
T 3nmw_A 176 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 255 (354)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHH
Confidence 444 567889999999888887766443 333 24689999999876654 88888888888886 35542
Q ss_pred h---h--hhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHhh-----hHHHHHHHHhccchhhhh
Q psy11028 71 Y---L--SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKK-----LIEPLTNLIHRIISLSCW 129 (136)
Q Consensus 71 ~---~--~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~~-----l~e~l~~iL~~~~s~sv~ 129 (136)
- . ..+|.++.+|+. +++-.|..-...|..++..+++..+. .++.+.++|+..+....-
T Consensus 256 ~~~i~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~ 323 (354)
T 3nmw_A 256 RQILRENNCLQTLLQHLKS-HSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAM 323 (354)
T ss_dssp HHHHHTTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHH
T ss_pred HHHHHHcCCHHHHHHHHcC-CChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHH
Confidence 2 1 358999999987 67778999999999998665544433 367788888776655433
No 63
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=95.62 E-value=0.042 Score=47.15 Aligned_cols=97 Identities=16% Similarity=0.155 Sum_probs=72.1
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCC-CC----chhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCC------cchh
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFP-DA----LRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNP------KNYL 72 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P-~~----v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p------~~~~ 72 (136)
+...++++++.+|..|+.++-.+....+ +. ++..++.+.+.|.|+++.|-.++...+..+++..+ ..+.
T Consensus 371 l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~ 450 (876)
T 1qgr_A 371 IKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLA 450 (876)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHH
T ss_pred HHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHH
Confidence 4466788999999999999988876543 32 23467888889999999999999999999988744 3445
Q ss_pred hhHHHHHHHhccCCChhHHHHHHHHhhhcC
Q psy11028 73 SLAPVFFKLMTTSSNNWMLIKIIKLFGALT 102 (136)
Q Consensus 73 ~lvp~lv~iL~~v~~pWlqikiLk~L~~l~ 102 (136)
.+++.+.+.|.+ +|-.+....+.|..+.
T Consensus 451 ~~l~~l~~~l~~--~~~v~~~a~~al~~l~ 478 (876)
T 1qgr_A 451 PLLQCLIEGLSA--EPRVASNVCWAFSSLA 478 (876)
T ss_dssp HHHHHHHHHTTS--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC--CHHHHHHHHHHHHHHH
Confidence 677888887766 2666666666655543
No 64
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=95.60 E-value=0.081 Score=47.03 Aligned_cols=61 Identities=21% Similarity=0.161 Sum_probs=49.5
Q ss_pred hhcCCC---ChHHHHHHHHHHHHHHhHC-CCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhc
Q psy11028 6 IYLTST---KPYLRKKAVLMMYKVFLKF-PDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARK 66 (136)
Q Consensus 6 klL~~s---~~~VRKKA~l~~~rl~~~~-P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~ 66 (136)
..|+++ +|+||.+|+.++.|+.... |+..+..++.+.+.|.|+++-|-.+|...+..+++.
T Consensus 462 p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 462 PDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp HHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 334555 9999999999999998763 344556677888888999999999999999998873
No 65
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=95.52 E-value=0.046 Score=46.51 Aligned_cols=91 Identities=16% Similarity=0.191 Sum_probs=69.5
Q ss_pred CCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhccCCChh
Q psy11028 10 STKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNW 89 (136)
Q Consensus 10 ~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~~v~~pW 89 (136)
.+++-.||=|+--+.|+|+..|++.+..++.+.++.+|.|.+|=..|+--+-.+|+. ..+++++.+|.+
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~Q----- 107 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG------ENLPRVADILTQ----- 107 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHH-----
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHH-----
Confidence 356889999999999999999999999999999999999999988887777666655 347777777643
Q ss_pred HHHHHHHHhhhcCCCChHHHhhhHHHHHHHHh
Q psy11028 90 MLIKIIKLFGALTPLEPRLGKKLIEPLTNLIH 121 (136)
Q Consensus 90 lqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~ 121 (136)
.|..+|+.+...+...+..++.
T Consensus 108 ----------lLqtdd~~E~~~V~~sL~sllk 129 (507)
T 3u0r_A 108 ----------LLQTDDSAEFNLVNNALLSIFK 129 (507)
T ss_dssp ----------HTTCCCHHHHHHHHHHHHHHHH
T ss_pred ----------HHhccchHHHHHHHHHHHHHHh
Confidence 3445555555555555555554
No 66
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=95.45 E-value=0.063 Score=42.34 Aligned_cols=92 Identities=16% Similarity=0.145 Sum_probs=74.6
Q ss_pred CChHHHHHHHHHHHHHHhHCCCCc-hhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCC-cc----hhhhHHHHHHHhcc
Q psy11028 11 TKPYLRKKAVLMMYKVFLKFPDAL-RPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNP-KN----YLSLAPVFFKLMTT 84 (136)
Q Consensus 11 s~~~VRKKA~l~~~rl~~~~P~~v-~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p-~~----~~~lvp~lv~iL~~ 84 (136)
.+..+|+-|+.|+-.+....++.+ +.+.+.+.+.|.|++..+--+++..+..+++... +. ...++|.+++.|..
T Consensus 340 ~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d 419 (462)
T 1ibr_B 340 DDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419 (462)
T ss_dssp TCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGC
T ss_pred ccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 345799999999999999988644 4578999999999999999999999999987432 32 24578888888876
Q ss_pred CCChhHHHHHHHHhhhcCC
Q psy11028 85 SSNNWMLIKIIKLFGALTP 103 (136)
Q Consensus 85 v~~pWlqikiLk~L~~l~~ 103 (136)
++|..+-.....|+.++.
T Consensus 420 -~~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 420 -PSVVVRDTAAWTVGRICE 437 (462)
T ss_dssp -SCHHHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHH
Confidence 789999888888887764
No 67
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=95.36 E-value=0.17 Score=42.24 Aligned_cols=123 Identities=11% Similarity=0.116 Sum_probs=89.1
Q ss_pred hhh-cCCCChHHHHHHHHHHHHHHhHCCC----Cc--hhhHHHHHhhcCCCChh----HHHHHHHHHHHHHh---cCCcc
Q psy11028 5 FIY-LTSTKPYLRKKAVLMMYKVFLKFPD----AL--RPAFPRLKEKLEDPDSG----VQSAAVNVVCELAR---KNPKN 70 (136)
Q Consensus 5 ~kl-L~~s~~~VRKKA~l~~~rl~~~~P~----~v--~~~~~~l~~lL~D~d~~----V~~aal~l~~~l~~---~~p~~ 70 (136)
.++ ++++++.+++.|+-++.-+...+++ ++ ...++.+.++|.+.+.+ +.-.+..++..++. .+++.
T Consensus 292 V~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~ 371 (458)
T 3nmz_A 292 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 371 (458)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHH
Confidence 444 5667899999999888887764433 33 24688999999876654 88888888888886 45543
Q ss_pred hh-----hhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHhh-----hHHHHHHHHhccchhhh
Q psy11028 71 YL-----SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKK-----LIEPLTNLIHRIISLSC 128 (136)
Q Consensus 71 ~~-----~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~~-----l~e~l~~iL~~~~s~sv 128 (136)
-. ..+|.++.+|+. .++-.|..-..+|..++..+++..+. .++.+.++|+..+....
T Consensus 372 ~~~i~~~G~i~~Lv~LL~~-~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~ 438 (458)
T 3nmz_A 372 RQILRENNCLQTLLQHLKS-HSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIA 438 (458)
T ss_dssp HHHHHHTTHHHHHHHHSSC-SCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHH
T ss_pred HHHHHHcccHHHHHHHHcC-CChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHH
Confidence 21 358999999987 67789999999999998665554443 36678888876655443
No 68
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=95.30 E-value=0.1 Score=45.67 Aligned_cols=81 Identities=15% Similarity=0.209 Sum_probs=70.4
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCch-------hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCc-----ch
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-------PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK-----NY 71 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-------~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~-----~~ 71 (136)
+..+|++.+-|+|--|+.++-.++...|+.++ ..++++.++|+|+.--+-..++.++.++++.|++ .|
T Consensus 127 Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAF 206 (651)
T 3grl_A 127 LLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAF 206 (651)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 45678999999999999999999999998443 3689999999999988999999999999999997 36
Q ss_pred hhhHHHHHHHhcc
Q psy11028 72 LSLAPVFFKLMTT 84 (136)
Q Consensus 72 ~~lvp~lv~iL~~ 84 (136)
..-.+.+++|++.
T Consensus 207 EnaFe~Lf~Ii~~ 219 (651)
T 3grl_A 207 ENAFERLLDIITE 219 (651)
T ss_dssp TTHHHHHHHHHHH
T ss_pred hccHHHHHHHHHh
Confidence 6678889998884
No 69
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=95.21 E-value=0.21 Score=44.75 Aligned_cols=122 Identities=7% Similarity=0.062 Sum_probs=90.1
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhcCCCChhHHHHHHHHHHHHHh-cCCcc-h-----
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELAR-KNPKN-Y----- 71 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~-~~p~~-~----- 71 (136)
...+|+++++.+|+.|+-++..+.. +++.-. ..++.|.++|.+.++.+.-.|...+..++. .+|+. |
T Consensus 500 LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~ 578 (810)
T 3now_A 500 LCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRS 578 (810)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhh
Confidence 4578899999999999999999974 454222 257889999998888888888888888876 46653 2
Q ss_pred hhhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHhh-----hHHHHHHHHhccchh
Q psy11028 72 LSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKK-----LIEPLTNLIHRIISL 126 (136)
Q Consensus 72 ~~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~~-----l~e~l~~iL~~~~s~ 126 (136)
...+|+|+++|..-.+.-.+..-+..|..+....+...+. ..+.+.++|.+.+..
T Consensus 579 ~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~ 638 (810)
T 3now_A 579 LDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLY 638 (810)
T ss_dssp HHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTT
T ss_pred hcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHH
Confidence 2468999999975445555667889999999875544333 345677777766543
No 70
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=94.81 E-value=0.18 Score=38.44 Aligned_cols=87 Identities=13% Similarity=0.049 Sum_probs=68.0
Q ss_pred hhHHHHHhhcCCCCh--hHHHHHHHHHHHHHhcCCcch-----hhhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHH
Q psy11028 36 PAFPRLKEKLEDPDS--GVQSAAVNVVCELARKNPKNY-----LSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRL 108 (136)
Q Consensus 36 ~~~~~l~~lL~D~d~--~V~~aal~l~~~l~~~~p~~~-----~~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~ 108 (136)
..++.+.++|...|+ .+...+...+..++..+++.- ...+|.|+++|+. +++-+|-.-...|+.++.++++-
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s-~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV-QNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHH
Confidence 357889999988887 888888888899998776432 2459999999987 79999999999999998765433
Q ss_pred Hh-----hhHHHHHHHHhcc
Q psy11028 109 GK-----KLIEPLTNLIHRI 123 (136)
Q Consensus 109 ~~-----~l~e~l~~iL~~~ 123 (136)
.. --++.+.++|+++
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~ 106 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQT 106 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHccC
Confidence 22 3467788888753
No 71
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=94.63 E-value=0.059 Score=45.00 Aligned_cols=71 Identities=14% Similarity=0.174 Sum_probs=58.9
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhh
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLS 73 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~ 73 (136)
-+.++|.+.+..+++-|+-|+..+...+|+... ..++.+.++|.+.+..+.-.|...+..|+..+|..|+.
T Consensus 383 ~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~ky~~ 458 (458)
T 3nmz_A 383 TLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKD 458 (458)
T ss_dssp HHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSCC---
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHhhhcC
Confidence 356788999999999999999999866676433 25799999999999999999999999999999998873
No 72
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=94.62 E-value=0.44 Score=42.55 Aligned_cols=121 Identities=15% Similarity=0.121 Sum_probs=92.8
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCc-hhh-----------HHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcc
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDAL-RPA-----------FPRLKEKLEDPDSGVQSAAVNVVCELARKNPKN 70 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v-~~~-----------~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~ 70 (136)
-+..+|.+.++.||+.|+-|+.-+.. +|+.+ ..+ ++.+..+++..|..+-.||...+.-+...+|..
T Consensus 610 ~L~~LL~s~n~~VrrAA~elI~NL~~-~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~i 688 (778)
T 3opb_A 610 TIENLMLDENVPLQRSTLELISNMMS-HPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLI 688 (778)
T ss_dssp HHHHGGGCSSHHHHHHHHHHHHHHHT-SGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHH
Confidence 45678888999999999999999986 77753 232 446888899999999999999998887777643
Q ss_pred h------hhhHHHHHHHhccC-CChhHHHHHHHHhhhcCC---CCh--------HHHhhhHHHHHHHHhccc
Q psy11028 71 Y------LSLAPVFFKLMTTS-SNNWMLIKIIKLFGALTP---LEP--------RLGKKLIEPLTNLIHRII 124 (136)
Q Consensus 71 ~------~~lvp~lv~iL~~v-~~pWlqikiLk~L~~l~~---~e~--------~~~~~l~e~l~~iL~~~~ 124 (136)
. ...+..++++|... .++=+|-+.+-+|..+.. .+. ...+++.+.+.++|...+
T Consensus 689 a~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~~ 760 (778)
T 3opb_A 689 AKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRGD 760 (778)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSSS
T ss_pred HHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCCC
Confidence 2 24678899999875 899999888888887653 221 124678888888887764
No 73
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=94.55 E-value=0.39 Score=36.70 Aligned_cols=80 Identities=16% Similarity=0.203 Sum_probs=45.4
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcC-CCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHH
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLE-DPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKL 81 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~-D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~i 81 (136)
++.++|.+.-=-|+|-|.-.+.-+.+.+||+.++...++.-++. |...-.....-..+=.+++.+|+..++.+|-+..-
T Consensus 36 ~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~~vVp~lfan 115 (253)
T 2db0_A 36 KLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFAN 115 (253)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHHhhHHHHHHH
Confidence 34555555555577777777777777777777777766666653 33222223333333444555665555555555444
Q ss_pred h
Q psy11028 82 M 82 (136)
Q Consensus 82 L 82 (136)
.
T Consensus 116 y 116 (253)
T 2db0_A 116 Y 116 (253)
T ss_dssp S
T ss_pred H
Confidence 3
No 74
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=94.47 E-value=0.52 Score=35.67 Aligned_cols=63 Identities=16% Similarity=0.054 Sum_probs=52.1
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcC
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~ 67 (136)
+.|+|.++++-+|.+|.-|+..++...- ......+.+...+..++|-|..+++..+..+.+..
T Consensus 108 veK~l~~~k~~~~~~a~~~l~~~~~~~~-~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f 170 (278)
T 4ffb_C 108 VEKGLTSSRATTKTQSMSCILSLCGLDT-SITQSVELVIPFFEKKLPKLIAAAANCVYELMAAF 170 (278)
T ss_dssp HHHTSSCCCHHHHHHHHHHHHHHHHTSS-SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCccHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence 3467899999999999999998886542 23446788889999999999999999999988764
No 75
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=94.45 E-value=0.13 Score=45.99 Aligned_cols=119 Identities=17% Similarity=0.183 Sum_probs=87.0
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCch------hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch-----
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR------PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY----- 71 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~------~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~----- 71 (136)
-+..+|.|+++.||+.|+-|+..+.. +|+... ..++.+.+++...|.++..+|...+..++..+++..
T Consensus 627 ~Lv~LL~s~~~~Vq~~A~~~L~NLa~-~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~ 705 (810)
T 3now_A 627 KIEYYLMEDHLYLTRAAAQCLCNLVM-SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILA 705 (810)
T ss_dssp HHHHHHHSCCTTHHHHHHHHHHHHTT-SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhC-ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 35678889999999999999998875 333322 245778899999999999999999999988665422
Q ss_pred -hhhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHhh-----hHHHHHHHHhcc
Q psy11028 72 -LSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKK-----LIEPLTNLIHRI 123 (136)
Q Consensus 72 -~~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~~-----l~e~l~~iL~~~ 123 (136)
...+|.++++|.. +++=+|-.-+..+..+...+++..+. .++.+.++++..
T Consensus 706 ~~g~I~~Lv~LL~s-~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~ 762 (810)
T 3now_A 706 IASWLDILHTLIAN-PSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLP 762 (810)
T ss_dssp STTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCT
T ss_pred HcCCHHHHHHHHCC-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCc
Confidence 2478999999986 67777777777777776555443333 345666666544
No 76
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=93.94 E-value=0.61 Score=35.26 Aligned_cols=64 Identities=14% Similarity=0.006 Sum_probs=50.3
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCch---------hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcC
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR---------PAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~---------~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~ 67 (136)
+...|.|++=-.|+-|.-.+.+++...|.... ...+-+.+.+.|+|..|+..++.++..++..-
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~ 86 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAF 86 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHh
Confidence 34568899999999999999999987664322 13466888999999999999999999998753
No 77
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=93.84 E-value=0.11 Score=41.72 Aligned_cols=71 Identities=14% Similarity=0.174 Sum_probs=60.0
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhh
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLS 73 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~ 73 (136)
-..++|.+.+..+++-|+-++..+...+++... ..++.|.++|.+.+..+.-.+...+..++..+|..|+.
T Consensus 267 ~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~~~~ 342 (354)
T 3nmw_A 267 TLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKD 342 (354)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGGGC-
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHHHhh
Confidence 356788899999999999999999866665433 25899999999999999999999999999999998874
No 78
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=93.75 E-value=0.44 Score=41.04 Aligned_cols=119 Identities=11% Similarity=0.073 Sum_probs=87.1
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhH-CCCC----ch-hhHHHHHhhcCC-CChhHHHHHHHHHHHHHhcCCc---chhh
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLK-FPDA----LR-PAFPRLKEKLED-PDSGVQSAAVNVVCELARKNPK---NYLS 73 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~-~P~~----v~-~~~~~l~~lL~D-~d~~V~~aal~l~~~l~~~~p~---~~~~ 73 (136)
..++|++.++.++..|+-|+..+... +++. ++ ..++.+.++|.+ .+..+.-.+..++..++..+.. ....
T Consensus 95 LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~ 174 (584)
T 3l6x_A 95 LVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDH 174 (584)
T ss_dssp HHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhc
Confidence 46789999999999999999988763 3432 22 368999999986 6888899999999999874321 2345
Q ss_pred hHHHHHHHhc-----------------cCCChhHHHHHHHHhhhcCCCChHHHhh------hHHHHHHHHhc
Q psy11028 74 LAPVFFKLMT-----------------TSSNNWMLIKIIKLFGALTPLEPRLGKK------LIEPLTNLIHR 122 (136)
Q Consensus 74 lvp~lv~iL~-----------------~v~~pWlqikiLk~L~~l~~~e~~~~~~------l~e~l~~iL~~ 122 (136)
.+|.|+++|. ..+++=.+...-.+|+.|+..++...+. +++.+..+|+.
T Consensus 175 alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~ 246 (584)
T 3l6x_A 175 ALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQA 246 (584)
T ss_dssp THHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred cHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHH
Confidence 6899999772 2345778888888999998776543333 44577777765
No 79
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=93.71 E-value=0.83 Score=38.87 Aligned_cols=116 Identities=13% Similarity=0.206 Sum_probs=88.5
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhc
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMT 83 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~ 83 (136)
...|..+.+.-||+-|+-.+-.+++- +.+....+.|.++|...|+..+.++-..+.++.+.+|.. .+-.-+.+|..
T Consensus 70 ~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~--tl~~lf~~i~~ 145 (507)
T 3u0r_A 70 QLDLCEDEDVSIRRQAIKELPQFATG--ENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKG--TLGGLFSQILQ 145 (507)
T ss_dssp HHHHHTCSSHHHHHHHHHHGGGGCCT--TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHH--HHHHHHHHHHH
T ss_pred HHHHHhcccHHHHHHHHHhhHHHhhh--hhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcChHH--HHHHHHHHHcc
Confidence 35677889999999999998888876 778889999999999999999999999999999999863 22333334444
Q ss_pred cCCChhHHHHHHHHhh----hcCC--CChHHHhhhHHHHHHHHhccch
Q psy11028 84 TSSNNWMLIKIIKLFG----ALTP--LEPRLGKKLIEPLTNLIHRIIS 125 (136)
Q Consensus 84 ~v~~pWlqikiLk~L~----~l~~--~e~~~~~~l~e~l~~iL~~~~s 125 (136)
+++-.--++|++++ .+++ ...+...-+.+.+..+|+..++
T Consensus 146 --~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT~ 191 (507)
T 3u0r_A 146 --GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTG 191 (507)
T ss_dssp --SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCCH
T ss_pred --cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccccH
Confidence 37888888888885 2232 2245566777888888877766
No 80
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=93.27 E-value=0.85 Score=39.99 Aligned_cols=92 Identities=10% Similarity=0.173 Sum_probs=68.1
Q ss_pred CCCChHHHHHHHHHHHHHHh---HCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHH----H
Q psy11028 9 TSTKPYLRKKAVLMMYKVFL---KFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFK----L 81 (136)
Q Consensus 9 ~~s~~~VRKKA~l~~~rl~~---~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~----i 81 (136)
.+++|.||..|+.++-++.+ .+|+.++..++.+.+.|.| +.|..+|..++..+++.-++.+.+..+.++. +
T Consensus 499 ~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~ 576 (963)
T 2x19_B 499 SISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDV 576 (963)
T ss_dssp CCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44689999999999988765 3566677788888888865 8999999999999998777665555555554 4
Q ss_pred hccC-CChhHHHHHHHHhhhcC
Q psy11028 82 MTTS-SNNWMLIKIIKLFGALT 102 (136)
Q Consensus 82 L~~v-~~pWlqikiLk~L~~l~ 102 (136)
+.+. .++=.+..+++.++.+.
T Consensus 577 l~~~~~~~~~~~~~~eai~~i~ 598 (963)
T 2x19_B 577 LMKQIHKTSQCMWLMQALGFLL 598 (963)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHH
T ss_pred hccCCCChHHHHHHHHHHHHHH
Confidence 4431 24566777777777654
No 81
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=93.07 E-value=0.92 Score=32.67 Aligned_cols=83 Identities=8% Similarity=0.109 Sum_probs=65.5
Q ss_pred HHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch------hhhHHHHHHHhccCCChhHHHH
Q psy11028 20 VLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY------LSLAPVFFKLMTTSSNNWMLIK 93 (136)
Q Consensus 20 ~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~------~~lvp~lv~iL~~v~~pWlqik 93 (136)
++-+--+++..|+...+.+..|++.|..+|+-|..-|+.++-.+.++=...| +.|...+++++..-.+|-.+-|
T Consensus 36 ~leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~k 115 (163)
T 1x5b_A 36 IMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEK 115 (163)
T ss_dssp HHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHH
Confidence 3444455666676666778889999999999999999999998888765544 3467778888876678999999
Q ss_pred HHHHhhhcC
Q psy11028 94 IIKLFGALT 102 (136)
Q Consensus 94 iLk~L~~l~ 102 (136)
+|.+++.-+
T Consensus 116 il~li~~W~ 124 (163)
T 1x5b_A 116 LKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988654
No 82
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=92.70 E-value=1.3 Score=33.46 Aligned_cols=99 Identities=16% Similarity=0.199 Sum_probs=71.5
Q ss_pred HHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch------hhhHHHHHHHhccCCChhHHHH
Q psy11028 20 VLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY------LSLAPVFFKLMTTSSNNWMLIK 93 (136)
Q Consensus 20 ~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~------~~lvp~lv~iL~~v~~pWlqik 93 (136)
++-+-=++...++-..+.+..|++.|..+|+-|..-|++++-.+.++-...| +++...++++++.-+++=.+-|
T Consensus 29 ileicD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~k 108 (226)
T 3zyq_A 29 ILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNK 108 (226)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHH
Confidence 4444445566666666788889999999999999999999988888765543 3466778888877778889999
Q ss_pred HHHHhhhcC---CCChHHHhhhHHHHHHHH
Q psy11028 94 IIKLFGALT---PLEPRLGKKLIEPLTNLI 120 (136)
Q Consensus 94 iLk~L~~l~---~~e~~~~~~l~e~l~~iL 120 (136)
+|.+++..+ +.+|+. ..+..+++-|
T Consensus 109 il~li~~W~~~f~~~~~l--~~i~~~Y~~L 136 (226)
T 3zyq_A 109 ILYLIQAWAHAFRNEPKY--KVVQDTYQIM 136 (226)
T ss_dssp HHHHHHHHHHHTTTCGGG--HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcch--HHHHHHHHHH
Confidence 999998654 355654 2334444444
No 83
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=91.84 E-value=0.24 Score=42.87 Aligned_cols=79 Identities=14% Similarity=0.095 Sum_probs=60.7
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCch-----hhH-HHHHhhcCCCChhHHHHHHHHHHHHHhcC-Ccchh----
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAF-PRLKEKLEDPDSGVQSAAVNVVCELARKN-PKNYL---- 72 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~-~~l~~lL~D~d~~V~~aal~l~~~l~~~~-p~~~~---- 72 (136)
+.+.|+++++..|..|+.|+..+++ +|+.-. ..+ .-+..+|.|++..|..+|..++-.|+... ++.+.
T Consensus 39 ll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~ 117 (684)
T 4gmo_A 39 VLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYR 117 (684)
T ss_dssp HHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHH
Confidence 4567899999999999999999986 665332 244 44688899999999999999999998765 44322
Q ss_pred -hhHHHHHHHhc
Q psy11028 73 -SLAPVFFKLMT 83 (136)
Q Consensus 73 -~lvp~lv~iL~ 83 (136)
...|++.+.|+
T Consensus 118 ~~il~~L~~~l~ 129 (684)
T 4gmo_A 118 LDVLTAIEHAAK 129 (684)
T ss_dssp TTHHHHHHHHHH
T ss_pred cChHHHHHHHHH
Confidence 25777777766
No 84
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=91.82 E-value=1.1 Score=39.83 Aligned_cols=64 Identities=14% Similarity=0.162 Sum_probs=53.1
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHhH-CCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCC
Q psy11028 5 FIYLTSTKPYLRKKAVLMMYKVFLK-FPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNP 68 (136)
Q Consensus 5 ~klL~~s~~~VRKKA~l~~~rl~~~-~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p 68 (136)
...+.+..+.||.+++.|+..+.+. +|+-=+++++.+.+.+.+.|+....+++.++.++++...
T Consensus 91 l~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~ 155 (960)
T 1wa5_C 91 VPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWR 155 (960)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGT
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3344455699999999999999987 676566788899999988899999999999999998653
No 85
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=91.71 E-value=0.31 Score=43.74 Aligned_cols=90 Identities=13% Similarity=0.203 Sum_probs=60.8
Q ss_pred CChHHHHHHHHHHHHH---HhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh--------hhHHHHH
Q psy11028 11 TKPYLRKKAVLMMYKV---FLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL--------SLAPVFF 79 (136)
Q Consensus 11 s~~~VRKKA~l~~~rl---~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~--------~lvp~lv 79 (136)
++|.||.+++-++-|+ +..+|+.++..++.+.+.|.|.+++|-.+|...+..+++..++.+. ++++.+.
T Consensus 512 ~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il 591 (1049)
T 3m1i_C 512 NKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTII 591 (1049)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHH
Confidence 4566666777777644 4567777777888888899999999999999999999987554432 3444444
Q ss_pred H----HhccCCChhHHHHHHHHhhhc
Q psy11028 80 K----LMTTSSNNWMLIKIIKLFGAL 101 (136)
Q Consensus 80 ~----iL~~v~~pWlqikiLk~L~~l 101 (136)
+ ++... ++=-+..+++.++.+
T Consensus 592 ~~l~~~~~~~-~~~~~~~~~eai~~i 616 (1049)
T 3m1i_C 592 RDIQKTTADL-QPQQVHTFYKACGII 616 (1049)
T ss_dssp HTHHHHHTTS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CHHHHHHHHHHHHHH
Confidence 3 44332 333345566666555
No 86
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=91.52 E-value=0.26 Score=44.91 Aligned_cols=91 Identities=13% Similarity=0.203 Sum_probs=61.6
Q ss_pred CChHHHHHHHHHHHH---HHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh--------hhHHHHH
Q psy11028 11 TKPYLRKKAVLMMYK---VFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL--------SLAPVFF 79 (136)
Q Consensus 11 s~~~VRKKA~l~~~r---l~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~--------~lvp~lv 79 (136)
.++.||..++.++-| .+..+|+.++..+..+-+.+.|++++|..+|...+..+++.-.+.+. ++++.++
T Consensus 512 ~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il 591 (1023)
T 4hat_C 512 NKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTII 591 (1023)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHH
Confidence 556677788777765 44568888888899999999999999999999999999886433221 2333333
Q ss_pred H----HhccCCChhHHHHHHHHhhhcC
Q psy11028 80 K----LMTTSSNNWMLIKIIKLFGALT 102 (136)
Q Consensus 80 ~----iL~~v~~pWlqikiLk~L~~l~ 102 (136)
+ +... -.+=-...+.+.++.+.
T Consensus 592 ~~l~~~~~~-l~~~~~~~lyeai~~vi 617 (1023)
T 4hat_C 592 RDIQKTTAD-LQPQQVHTFYKACGIII 617 (1023)
T ss_dssp HTHHHHHTT-SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCHHHHHHHHHHHHHHH
Confidence 3 2222 34444556666666554
No 87
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=91.48 E-value=0.5 Score=36.89 Aligned_cols=59 Identities=12% Similarity=0.048 Sum_probs=28.1
Q ss_pred hhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhc
Q psy11028 6 IYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARK 66 (136)
Q Consensus 6 klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~ 66 (136)
.-+.++++-||.++--++..++..+|. ..+++++.+.+..+|.-+-...+..+..+...
T Consensus 139 eKlGd~k~~vR~~~r~il~~l~~v~~~--~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~ 197 (266)
T 2of3_A 139 LKTGEAKDNMRTSVRDIVNVLSDVVGP--LKMTPMLLDALKSKNARQRSECLLVIEYYITN 197 (266)
T ss_dssp HGGGCSSHHHHHHHHHHHHHHHHHHCH--HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHhCCChHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 334555666666655555555444321 11334444444455555555554444444443
No 88
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=91.39 E-value=2.3 Score=30.02 Aligned_cols=88 Identities=13% Similarity=0.135 Sum_probs=65.0
Q ss_pred HHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch------hhhHHHHHHHhcc-----CCCh
Q psy11028 20 VLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY------LSLAPVFFKLMTT-----SSNN 88 (136)
Q Consensus 20 ~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~------~~lvp~lv~iL~~-----v~~p 88 (136)
++-+-=+++..|+...+....|++.|..+|+-|..-|+.++-.+.++=...| +.|...+++++.. -.++
T Consensus 22 ~leicD~I~~~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~ 101 (148)
T 1mhq_A 22 IQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATG 101 (148)
T ss_dssp HHHHHHHHHHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCH
T ss_pred HHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCH
Confidence 3444455556665555677889999999999999999999998888866655 3567778877763 2477
Q ss_pred hHHHHHHHHhhhcC---CCChH
Q psy11028 89 WMLIKIIKLFGALT---PLEPR 107 (136)
Q Consensus 89 WlqikiLk~L~~l~---~~e~~ 107 (136)
=.+-|+|.+++.-+ +++|+
T Consensus 102 ~Vk~kil~li~~W~~~f~~~p~ 123 (148)
T 1mhq_A 102 KVKGRVIEILFSWTVWFPEDIK 123 (148)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHHHHcCCCch
Confidence 88889999888654 45553
No 89
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=91.30 E-value=0.91 Score=36.76 Aligned_cols=98 Identities=12% Similarity=0.070 Sum_probs=66.8
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhH-----HHHHhhcCCCChhHHHHHHHHHHHHHhcCCc-----chhh
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAF-----PRLKEKLEDPDSGVQSAAVNVVCELARKNPK-----NYLS 73 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~-----~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~-----~~~~ 73 (136)
+.+-|.+++.-.+|+|..-+.++++.+++.++.|+ ..+.+...+.+.-..+=++..+.++..+.-. ....
T Consensus 123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~ 202 (339)
T 3dad_A 123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSD 202 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHH
Confidence 34455677888899999999999999999998764 4577778888988898899988888664110 0224
Q ss_pred hHHHHHHHhccCCChhHHHHHHHHhhhcC
Q psy11028 74 LAPVFFKLMTTSSNNWMLIKIIKLFGALT 102 (136)
Q Consensus 74 lvp~lv~iL~~v~~pWlqikiLk~L~~l~ 102 (136)
++..+++++.. .++-..=.-|++|..+.
T Consensus 203 fI~~lyslv~s-~~~~V~k~AL~LL~v~V 230 (339)
T 3dad_A 203 TIQWLYTLCAS-LSRLVVKTALKLLLVFV 230 (339)
T ss_dssp HHHHHHHGGGC-SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-ccHHHHHHHHHHHHHHH
Confidence 56666666653 33444333445554443
No 90
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=91.19 E-value=1 Score=39.70 Aligned_cols=89 Identities=20% Similarity=0.140 Sum_probs=62.1
Q ss_pred CCChHHHHHHHHHHHHHHhH---CCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHH----HHh
Q psy11028 10 STKPYLRKKAVLMMYKVFLK---FPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFF----KLM 82 (136)
Q Consensus 10 ~s~~~VRKKA~l~~~rl~~~---~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv----~iL 82 (136)
+++|.||..|+.++.++... +|+.++...+.+.+.| | +.|..+|..++..+++.-++...+..+.+. .++
T Consensus 517 d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l 593 (971)
T 2x1g_F 517 KLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASL 593 (971)
T ss_dssp TSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 35899999999999987754 4677777888888888 4 889999999999999876554444444444 444
Q ss_pred ccC-CChhHHHHHHHHhhhc
Q psy11028 83 TTS-SNNWMLIKIIKLFGAL 101 (136)
Q Consensus 83 ~~v-~~pWlqikiLk~L~~l 101 (136)
.+- .+.=.+..+++.++.+
T Consensus 594 ~~~~~~~~~~~~~~~ai~~i 613 (971)
T 2x1g_F 594 NTGRMKNSDSVRLMFSIGKL 613 (971)
T ss_dssp HSTTSCHHHHHHHHHHHHHH
T ss_pred cCCCCChHHHHHHHHHHHHH
Confidence 431 2456677777776655
No 91
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=91.06 E-value=2.8 Score=29.19 Aligned_cols=86 Identities=12% Similarity=0.125 Sum_probs=63.5
Q ss_pred HHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch------hhhHHHHHHHhccCCChhHHHHH
Q psy11028 21 LMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY------LSLAPVFFKLMTTSSNNWMLIKI 94 (136)
Q Consensus 21 l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~------~~lvp~lv~iL~~v~~pWlqiki 94 (136)
+-+-=+++..|+...+.+..+++.|..+|+.|..-|+.++-.+.++-...| +.+...++++++. ++|=.+-|+
T Consensus 27 leicD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~-~~~~Vk~ki 105 (140)
T 3ldz_A 27 LDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNK-GHPKVCEKL 105 (140)
T ss_dssp HHHHHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHH-SCHHHHHHH
T ss_pred HHHHHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhcc-CCHHHHHHH
Confidence 333444555665555677889999999999999999999877777655544 3577778888865 688899999
Q ss_pred HHHhhhcC---CCChH
Q psy11028 95 IKLFGALT---PLEPR 107 (136)
Q Consensus 95 Lk~L~~l~---~~e~~ 107 (136)
+.++...+ +++|.
T Consensus 106 l~li~~W~~~f~~~~~ 121 (140)
T 3ldz_A 106 KALMVEWTDEFKNDPQ 121 (140)
T ss_dssp HHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHhCCCCC
Confidence 99988665 45554
No 92
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=91.01 E-value=1.2 Score=41.15 Aligned_cols=94 Identities=12% Similarity=0.188 Sum_probs=68.8
Q ss_pred CCCChHHHHHHHHHHHHH---HhHCCCCchhhHHHHHhhcCCC------------ChhHHHHHHHHHHHHHhcCCcchhh
Q psy11028 9 TSTKPYLRKKAVLMMYKV---FLKFPDALRPAFPRLKEKLEDP------------DSGVQSAAVNVVCELARKNPKNYLS 73 (136)
Q Consensus 9 ~~s~~~VRKKA~l~~~rl---~~~~P~~v~~~~~~l~~lL~D~------------d~~V~~aal~l~~~l~~~~p~~~~~ 73 (136)
+..+|.+|.+++.|+-++ +..+|+.++...+++...+.|. +..|-.++.+.+..+++.-|+.+.+
T Consensus 542 ~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p 621 (1204)
T 3a6p_A 542 DTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLP 621 (1204)
T ss_dssp CCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred CCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 457999999999987444 4568888888888888777662 3479999999999999999886666
Q ss_pred hHHHHHH----Hhcc-C-CChhHHHHHHHHhhhcC
Q psy11028 74 LAPVFFK----LMTT-S-SNNWMLIKIIKLFGALT 102 (136)
Q Consensus 74 lvp~lv~----iL~~-v-~~pWlqikiLk~L~~l~ 102 (136)
..+.+.. ++.+ . -+.=-++.+...+..++
T Consensus 622 ~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia 656 (1204)
T 3a6p_A 622 NFDMLYNHVKQLLSNELLLTQMEKCALMEALVLIS 656 (1204)
T ss_dssp GHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHh
Confidence 5555554 4431 1 34666777777777664
No 93
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=90.96 E-value=2 Score=37.58 Aligned_cols=89 Identities=15% Similarity=0.176 Sum_probs=57.2
Q ss_pred CChHHHHHHHHHHHHHHhH-CCCCchhhHHHHHhhcCC-----CChhHHHHHHHHHHHHHhcC-------------Ccch
Q psy11028 11 TKPYLRKKAVLMMYKVFLK-FPDALRPAFPRLKEKLED-----PDSGVQSAAVNVVCELARKN-------------PKNY 71 (136)
Q Consensus 11 s~~~VRKKA~l~~~rl~~~-~P~~v~~~~~~l~~lL~D-----~d~~V~~aal~l~~~l~~~~-------------p~~~ 71 (136)
+.++||.|.+.|+..+.+. +|+-=+++++.+.+.+.. .++...-.++.++..+++.- .+..
T Consensus 115 ~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l 194 (963)
T 2x19_B 115 GSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSL 194 (963)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CCS
T ss_pred CCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHH
Confidence 4699999999999999876 466555677777777754 25556677777777666421 1112
Q ss_pred hhhHHHH----HHHhccCCC-hhHHHHHHHHhh
Q psy11028 72 LSLAPVF----FKLMTTSSN-NWMLIKIIKLFG 99 (136)
Q Consensus 72 ~~lvp~l----v~iL~~v~~-pWlqikiLk~L~ 99 (136)
....|.+ ..++.+..+ .|+....|+.+.
T Consensus 195 ~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~ 227 (963)
T 2x19_B 195 AVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFS 227 (963)
T ss_dssp GGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 2334444 445544333 388888888774
No 94
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=90.52 E-value=3.5 Score=32.02 Aligned_cols=121 Identities=8% Similarity=0.037 Sum_probs=81.5
Q ss_pred hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchh----hHHHHHhhcCCCChhHHHHHHHHHHHHHh----cCCc--ch
Q psy11028 2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRP----AFPRLKEKLEDPDSGVQSAAVNVVCELAR----KNPK--NY 71 (136)
Q Consensus 2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~----~~~~l~~lL~D~d~~V~~aal~l~~~l~~----~~p~--~~ 71 (136)
.|+...|-|++.--|-+|+-.+.+....+|+.+-. +++.+.-.++|+|+.|+..++.++..+.. .++. .|
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ 128 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE 128 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 46777888888888889999999999888876443 35666667889999999999999988743 3332 22
Q ss_pred --hhhHHHHHHHhccC------------------CChh-HHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccch
Q psy11028 72 --LSLAPVFFKLMTTS------------------SNNW-MLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIIS 125 (136)
Q Consensus 72 --~~lvp~lv~iL~~v------------------~~pW-lqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~s 125 (136)
..++|.++.-+... ..|- +--.++. -+...+.|....+.+.+..++++...
T Consensus 129 ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~---g~ksKN~R~R~e~l~~l~~li~~~G~ 200 (266)
T 2of3_A 129 EVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLD---ALKSKNARQRSECLLVIEYYITNAGI 200 (266)
T ss_dssp HHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHH---GGGCSCHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHH---HHccCCHHHHHHHHHHHHHHHHhcCC
Confidence 35678888766532 2222 1112222 33445577777777777777766544
No 95
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=90.14 E-value=0.65 Score=42.03 Aligned_cols=74 Identities=7% Similarity=0.097 Sum_probs=61.9
Q ss_pred CCChHHHHHHHHHHHHHHh---HCCCCchhhHHHHHh--hcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhc
Q psy11028 10 STKPYLRKKAVLMMYKVFL---KFPDALRPAFPRLKE--KLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMT 83 (136)
Q Consensus 10 ~s~~~VRKKA~l~~~rl~~---~~P~~v~~~~~~l~~--lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~ 83 (136)
+++|.||..++.++-|..+ .+|+.++...+.+.+ .+.|+++.|-.+|..++..+++.-+....+.++.++..+.
T Consensus 506 ~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~ 584 (980)
T 3ibv_A 506 HPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLG 584 (980)
T ss_dssp CCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHH
Confidence 7899999999999988665 578888888888888 8889999999999999999999877655566666666554
No 96
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=89.52 E-value=4.1 Score=33.37 Aligned_cols=55 Identities=16% Similarity=0.167 Sum_probs=33.1
Q ss_pred HCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhc
Q psy11028 29 KFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMT 83 (136)
Q Consensus 29 ~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~ 83 (136)
++|+++++|++.+.+.-.|++.-|--.++..+.|.+..+++.....++.+..+|.
T Consensus 56 ~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~ 110 (386)
T 3o2t_A 56 KDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLR 110 (386)
T ss_dssp TCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566666666666666666666666666666666666655555555555555554
No 97
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=89.45 E-value=1.4 Score=33.99 Aligned_cols=120 Identities=11% Similarity=0.133 Sum_probs=80.4
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHH-------HhcCCc------
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCEL-------ARKNPK------ 69 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l-------~~~~p~------ 69 (136)
++..+-.+++..|||-.+-=+...+++.|+++....+.+..+|.|.|+.|+=.++.....+ ...+|.
T Consensus 57 ~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~ 136 (257)
T 3gs3_A 57 SVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAE 136 (257)
T ss_dssp HHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHH
T ss_pred HHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHH
Confidence 3444556788999999999999999999999999999999999999999987766655444 223432
Q ss_pred -chhh---hHHHHHHHhccCCChhHHHHHHHHhhhc----CCC--C-------------------------hHHHhhhHH
Q psy11028 70 -NYLS---LAPVFFKLMTTSSNNWMLIKIIKLFGAL----TPL--E-------------------------PRLGKKLIE 114 (136)
Q Consensus 70 -~~~~---lvp~lv~iL~~v~~pWlqikiLk~L~~l----~~~--e-------------------------~~~~~~l~e 114 (136)
.|.. +-..+.+++.+ .++=..+..+|+++.. .+. + ..++..+.+
T Consensus 137 ~~W~~m~~lK~~Il~~~~s-~n~gvkl~~iKF~e~vIl~qT~~~~~~~~~~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~ 215 (257)
T 3gs3_A 137 QAWNILSLIKAQILDMIDN-ENDGIRTNAIKFLEGVVVLQSFADEDSLKRDGDFSLADVPDHCTLFRREKLQEEGNNILD 215 (257)
T ss_dssp HHHHHHHHHHHHHHHGGGS-SCHHHHHHHHHHHHHHHHHTSCCCTTSCCCTTCCCGGGSCSSCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcc-CCcchHHHHHHHHHHHHHhhcCCCcccCCCCCCCCHHHCCCCCCcCCHHHHHHHHHHHHH
Confidence 3433 23334444333 4455556666666542 111 1 146788888
Q ss_pred HHHHHHhcc
Q psy11028 115 PLTNLIHRI 123 (136)
Q Consensus 115 ~l~~iL~~~ 123 (136)
.+.+.+.+.
T Consensus 216 ~LL~~~~~~ 224 (257)
T 3gs3_A 216 ILLQFHGTT 224 (257)
T ss_dssp HHHHHHTCT
T ss_pred HHHHHHcCC
Confidence 888876654
No 98
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=89.42 E-value=4.3 Score=28.74 Aligned_cols=88 Identities=16% Similarity=0.162 Sum_probs=66.2
Q ss_pred HHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcch------hhhHHHHHHHhcc-----CCCh
Q psy11028 20 VLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNY------LSLAPVFFKLMTT-----SSNN 88 (136)
Q Consensus 20 ~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~------~~lvp~lv~iL~~-----v~~p 88 (136)
++-+-=+++..|+.-.+....|++.|..+||-|..-|++++-.+.++=...| +.|...+++++.. -+++
T Consensus 32 ileicD~I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~ 111 (149)
T 3g2s_A 32 INGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSE 111 (149)
T ss_dssp HHHHHHHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCH
T ss_pred HHHHHHHHHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCH
Confidence 3444445556665555678889999999999999999999988888777655 3567888888863 3577
Q ss_pred hHHHHHHHHhhhcC---CCChH
Q psy11028 89 WMLIKIIKLFGALT---PLEPR 107 (136)
Q Consensus 89 WlqikiLk~L~~l~---~~e~~ 107 (136)
=.+-|+|.++...+ +++|+
T Consensus 112 ~Vk~kil~li~~W~~~f~~~p~ 133 (149)
T 3g2s_A 112 KVKNKILELLYSWTVGLPEEVK 133 (149)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHHHHhCCCch
Confidence 88999999998665 45564
No 99
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=88.66 E-value=0.43 Score=36.89 Aligned_cols=68 Identities=19% Similarity=0.097 Sum_probs=50.9
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCch---hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALR---PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL 72 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~---~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~ 72 (136)
+.+...+.++.||+-|+.+...... -|..-. ..++.+..+..|++.=|--|.-+.+.++++.+|+...
T Consensus 144 ~~~W~~d~n~~VRR~Ase~~rpW~~-~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~ 214 (240)
T 3l9t_A 144 IDEWLKSSNLHTRRAATEGLRIWTN-RPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVK 214 (240)
T ss_dssp HHHHHHCSSHHHHHHHHHHTCSGGG-STTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHhhHHHhc-cchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHH
Confidence 3455688999999999988754222 233222 2678888888999999999999999999999997433
No 100
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=87.45 E-value=3.8 Score=30.48 Aligned_cols=83 Identities=12% Similarity=0.220 Sum_probs=64.7
Q ss_pred HHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh------hhHHHHHHHhccCCChhHHHH
Q psy11028 20 VLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL------SLAPVFFKLMTTSSNNWMLIK 93 (136)
Q Consensus 20 ~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~------~lvp~lv~iL~~v~~pWlqik 93 (136)
++-+.=++...|+...+.+..|++.|..+|+.|..-|+.++-.+.++=...|. ++...+++++++-+++=.+-|
T Consensus 26 ~leicd~i~~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~k 105 (220)
T 1dvp_A 26 ILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQK 105 (220)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHH
T ss_pred HHHHHHhhcCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHH
Confidence 45555566667776667888899999999999999999999999887655442 367778888876667788889
Q ss_pred HHHHhhhcC
Q psy11028 94 IIKLFGALT 102 (136)
Q Consensus 94 iLk~L~~l~ 102 (136)
+|.+++.-+
T Consensus 106 il~li~~W~ 114 (220)
T 1dvp_A 106 MLELVQTWA 114 (220)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998887554
No 101
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=86.67 E-value=2.3 Score=34.90 Aligned_cols=121 Identities=18% Similarity=0.210 Sum_probs=80.5
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHH-------HhcCCc------
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCEL-------ARKNPK------ 69 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l-------~~~~p~------ 69 (136)
++..+-.+.+..|||-.+--+...+.+++|.+....+.+..+|.|.|++|+=.++.....+ +..+|.
T Consensus 67 ~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e 146 (386)
T 3o2t_A 67 EIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQE 146 (386)
T ss_dssp HHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHH
T ss_pred HHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHH
Confidence 4455556788999999999999999999999988999999999999999986666544333 223332
Q ss_pred -chhhh---HHHHHHHhccCCChhHHHHHHHHhhhc----CC--CC---h-------------------------HHHhh
Q psy11028 70 -NYLSL---APVFFKLMTTSSNNWMLIKIIKLFGAL----TP--LE---P-------------------------RLGKK 111 (136)
Q Consensus 70 -~~~~l---vp~lv~iL~~v~~pWlqikiLk~L~~l----~~--~e---~-------------------------~~~~~ 111 (136)
.|..+ -..+++++.+ .+.=..+..+||++.. .+ .+ | .++..
T Consensus 147 ~~W~~m~~lK~~Il~~~ds-~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~ 225 (386)
T 3o2t_A 147 ACWDMVSAMAGDIILLLDS-DNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKA 225 (386)
T ss_dssp HHHHHHHHHHHHHHHGGGC-SSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHH
Confidence 34432 3334443322 4455556666666542 21 11 1 36788
Q ss_pred hHHHHHHHHhccc
Q psy11028 112 LIEPLTNLIHRII 124 (136)
Q Consensus 112 l~e~l~~iL~~~~ 124 (136)
+.+.+.+.++...
T Consensus 226 lLd~LL~~l~~~~ 238 (386)
T 3o2t_A 226 ALEQLLKFMVHPA 238 (386)
T ss_dssp HHHHHHHHTTC--
T ss_pred HHHHHHHHHcccc
Confidence 8999999998653
No 102
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=86.55 E-value=6.8 Score=30.13 Aligned_cols=71 Identities=10% Similarity=0.111 Sum_probs=58.3
Q ss_pred HhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhccCCChhHHHHHHHHh
Q psy11028 27 FLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLF 98 (136)
Q Consensus 27 ~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~~v~~pWlqikiLk~L 98 (136)
+.++|++.+.|.+.+...-.|++.-|---.+..+.|.++.+++.....++.+..+|.+ .+|=..=+.+...
T Consensus 44 ~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d-~d~~V~K~~I~~~ 114 (257)
T 3gs3_A 44 LGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRD-NSAQVIKRVIQAC 114 (257)
T ss_dssp TTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTC-SCHHHHHHHHHHH
T ss_pred HccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHH
Confidence 4568999999999999988899999999999999999999998888888888888875 5565555555443
No 103
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=84.81 E-value=7.2 Score=28.09 Aligned_cols=83 Identities=14% Similarity=0.169 Sum_probs=63.2
Q ss_pred HHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh------hhHHHHHHHhcc-----CCCh
Q psy11028 20 VLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL------SLAPVFFKLMTT-----SSNN 88 (136)
Q Consensus 20 ~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~------~lvp~lv~iL~~-----v~~p 88 (136)
++-+--+++..++...+....|++.|..+|+-|..-|+.++-.+.++=...|. .|...+++++.. ..++
T Consensus 34 ileicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~ 113 (171)
T 1juq_A 34 IIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSE 113 (171)
T ss_dssp HHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCH
T ss_pred HHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCH
Confidence 44555566667766666788899999999999999999999888887555443 467788888863 2467
Q ss_pred hHHHHHHHHhhhcC
Q psy11028 89 WMLIKIIKLFGALT 102 (136)
Q Consensus 89 WlqikiLk~L~~l~ 102 (136)
=.+-|+|.+++.-+
T Consensus 114 ~Vk~kil~li~~W~ 127 (171)
T 1juq_A 114 KVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88889999888654
No 104
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=84.26 E-value=3.9 Score=35.78 Aligned_cols=87 Identities=18% Similarity=0.124 Sum_probs=68.0
Q ss_pred hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhh-------hHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHH-
Q psy11028 37 AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLS-------LAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRL- 108 (136)
Q Consensus 37 ~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~-------lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~- 108 (136)
.+.-+..+|++.|+.|-..++.++..++..+|+.+.+ -+|.++.+|.. +..-++-.-+-+|..+.+.++..
T Consensus 123 ~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d-~rE~iRneallLL~~Lt~~n~~iQ 201 (651)
T 3grl_A 123 NVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLAD-SREVIRNDGVLLLQALTRSNGAIQ 201 (651)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGC-SSHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhC-chHHHHHHHHHHHHHHhcCCHHHH
Confidence 4666888999999999999999999999999984332 38889999987 46788888888888888887653
Q ss_pred ----HhhhHHHHHHHHhccc
Q psy11028 109 ----GKKLIEPLTNLIHRII 124 (136)
Q Consensus 109 ----~~~l~e~l~~iL~~~~ 124 (136)
.+...|.+-++++...
T Consensus 202 klVAFEnaFe~Lf~Ii~~Eg 221 (651)
T 3grl_A 202 KIVAFENAFERLLDIITEEG 221 (651)
T ss_dssp HHHHHTTHHHHHHHHHHHHT
T ss_pred HHHHHhccHHHHHHHHHhcC
Confidence 2244666777776544
No 105
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=82.95 E-value=4.7 Score=36.87 Aligned_cols=116 Identities=17% Similarity=0.214 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhHCCC--Cchhh----HHHHHhhcCCCChhHHHHHHHHHHHHHh-cCCcchhhhHHHHHHHhccCCChh
Q psy11028 17 KKAVLMMYKVFLKFPD--ALRPA----FPRLKEKLEDPDSGVQSAAVNVVCELAR-KNPKNYLSLAPVFFKLMTTSSNNW 89 (136)
Q Consensus 17 KKA~l~~~rl~~~~P~--~v~~~----~~~l~~lL~D~d~~V~~aal~l~~~l~~-~~p~~~~~lvp~lv~iL~~v~~pW 89 (136)
-.|+.++..++++.+- .+|.+ .+.+.++..|++..|-.||-.....+.+ .+|.....+.|.+++-|.. ..-|
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~kw 148 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVE-TNKW 148 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHH-CCCH
T ss_pred HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc-ccch
Confidence 6788888889877654 44543 5788888899999999999999999987 5677778899999999976 3457
Q ss_pred -HHHHHHHHhhhcCCCChH----HHhhhHHHHHHHHhccchhhhhhhcc
Q psy11028 90 -MLIKIIKLFGALTPLEPR----LGKKLIEPLTNLIHRIISLSCWTGIK 133 (136)
Q Consensus 90 -lqikiLk~L~~l~~~e~~----~~~~l~e~l~~iL~~~~s~sv~~~~k 133 (136)
..+-.|+++..|...-|. .--.+++.+.+.+..+.+.+=-.|.|
T Consensus 149 ~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~ 197 (986)
T 2iw3_A 149 QEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATA 197 (986)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHH
Confidence 566677888777643332 22345566666666666554444433
No 106
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=82.41 E-value=2.8 Score=37.61 Aligned_cols=92 Identities=12% Similarity=0.080 Sum_probs=62.0
Q ss_pred CCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhcCCC---------ChhHHHHHHHHHHHHHhc-CCcchhh
Q psy11028 9 TSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDP---------DSGVQSAAVNVVCELARK-NPKNYLS 73 (136)
Q Consensus 9 ~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL~D~---------d~~V~~aal~l~~~l~~~-~p~~~~~ 73 (136)
++.++++|.-|+..+.+.++++=..++ ...+.+.+.+.+. ++.|......++.+|++. .|+.|..
T Consensus 59 ~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ 138 (1049)
T 3m1i_C 59 FSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPE 138 (1049)
T ss_dssp HCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTT
T ss_pred hCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchH
Confidence 467899999999999988876422222 2334455554332 467777778888888886 6899999
Q ss_pred hHHHHHHHhccCCChhHHHHHHHHhhhcC
Q psy11028 74 LAPVFFKLMTTSSNNWMLIKIIKLFGALT 102 (136)
Q Consensus 74 lvp~lv~iL~~v~~pWlqikiLk~L~~l~ 102 (136)
+++.++..+. +++-.....+.+|+.++
T Consensus 139 ll~~L~~~~~--~~~~~~~~~l~~L~~l~ 165 (1049)
T 3m1i_C 139 FIPELIGSSS--SSVNVCENNMIVLKLLS 165 (1049)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc--cChHHHHHHHHHHHHHH
Confidence 9999999986 35433334444444443
No 107
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=82.10 E-value=11 Score=26.59 Aligned_cols=82 Identities=7% Similarity=0.154 Sum_probs=59.7
Q ss_pred HHHHHHHhHCCCCchhhHHHHHhhcC-CCChhHHHHHHHHHHHHHhcCCcchh------hhHHH-HHHHhcc--CCChhH
Q psy11028 21 LMMYKVFLKFPDALRPAFPRLKEKLE-DPDSGVQSAAVNVVCELARKNPKNYL------SLAPV-FFKLMTT--SSNNWM 90 (136)
Q Consensus 21 l~~~rl~~~~P~~v~~~~~~l~~lL~-D~d~~V~~aal~l~~~l~~~~p~~~~------~lvp~-lv~iL~~--v~~pWl 90 (136)
+-+--+++..++...+.+..|++.|. ..|+-|..-|+.++-.+.++-...|. ++... +++++.. -+.+-.
T Consensus 38 leicD~I~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~V 117 (157)
T 1elk_A 38 MEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIV 117 (157)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHH
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHH
Confidence 44445566666666677888999997 58999999999999998888766554 35666 6777742 244577
Q ss_pred HHHHHHHhhhcC
Q psy11028 91 LIKIIKLFGALT 102 (136)
Q Consensus 91 qikiLk~L~~l~ 102 (136)
+-|+|.+++.-+
T Consensus 118 k~kil~li~~W~ 129 (157)
T 1elk_A 118 HDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 889998887554
No 108
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=78.76 E-value=5.5 Score=34.26 Aligned_cols=109 Identities=8% Similarity=-0.009 Sum_probs=71.1
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhH-CCCCchh-----hHHHHHhhcCC-------C--------------ChhHHHHH
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLK-FPDALRP-----AFPRLKEKLED-------P--------------DSGVQSAA 56 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~-~P~~v~~-----~~~~l~~lL~D-------~--------------d~~V~~aa 56 (136)
+.++|.++++-||-.|+-|+--+... .++.... .++.+..+|.. . -+.+.-.+
T Consensus 81 l~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (684)
T 4gmo_A 81 LTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSL 160 (684)
T ss_dssp HHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHH
Confidence 35678999999999999998777655 3444332 33444444321 0 02345567
Q ss_pred HHHHHHHHhcCCcchh-----hhHHHHHHHhcc--CCChhHHHHHHHHhhhcCCCChHHHhhh
Q psy11028 57 VNVVCELARKNPKNYL-----SLAPVFFKLMTT--SSNNWMLIKIIKLFGALTPLEPRLGKKL 112 (136)
Q Consensus 57 l~l~~~l~~~~p~~~~-----~lvp~lv~iL~~--v~~pWlqikiLk~L~~l~~~e~~~~~~l 112 (136)
++++..+++.+.+.+. ..+|.++..|.+ ....=++...+++|..+..+++...+.+
T Consensus 161 l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i 223 (684)
T 4gmo_A 161 LVLIGLLALARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAI 223 (684)
T ss_dssp HHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 7888888887766443 357888887753 3344588889999999988876554443
No 109
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=78.63 E-value=6.4 Score=35.98 Aligned_cols=106 Identities=11% Similarity=0.105 Sum_probs=68.0
Q ss_pred CCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHh-hcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhccCCC
Q psy11028 9 TSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKE-KLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSN 87 (136)
Q Consensus 9 ~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~-lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~~v~~ 87 (136)
++++..||+-|++++--+.-..|+.+ +++.+ ++.+.|+-|=.++.-.+=-++.-+|. .+.+..|..+++. ++
T Consensus 588 ~d~~d~VRraAViaLGlI~~g~~e~v----~rlv~~L~~~~d~~VR~gAalALGli~aGn~~--~~aid~L~~L~~D-~d 660 (963)
T 4ady_A 588 SDSNDDVRRAAVIALGFVLLRDYTTV----PRIVQLLSKSHNAHVRCGTAFALGIACAGKGL--QSAIDVLDPLTKD-PV 660 (963)
T ss_dssp HCSCHHHHHHHHHHHHHHTSSSCSSH----HHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC--HHHHHHHHHHHTC-SS
T ss_pred cCCcHHHHHHHHHHHHhhccCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc--HHHHHHHHHHccC-CC
Confidence 57888999999999887766667543 34444 33567777765554433333445553 4566666666665 68
Q ss_pred hhHHHHHHHHhhhcCCCChHH----HhhhHHHHHHHHh
Q psy11028 88 NWMLIKIIKLFGALTPLEPRL----GKKLIEPLTNLIH 121 (136)
Q Consensus 88 pWlqikiLk~L~~l~~~e~~~----~~~l~e~l~~iL~ 121 (136)
++.-..-+-.|+..+.+..+. ..++.+.+..++.
T Consensus 661 ~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~ 698 (963)
T 4ady_A 661 DFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVIT 698 (963)
T ss_dssp HHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHh
Confidence 888888888888887543221 3456666666665
No 110
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=78.13 E-value=13 Score=33.96 Aligned_cols=111 Identities=10% Similarity=0.064 Sum_probs=62.5
Q ss_pred CCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHH---------------------------------
Q psy11028 9 TSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSA--------------------------------- 55 (136)
Q Consensus 9 ~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~a--------------------------------- 55 (136)
.+.+..+|+-|++++--++--.++.++..++.+.. |.||-|=.+
T Consensus 518 e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~---~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~V 594 (963)
T 4ady_A 518 ETQHGNITRGLAVGLALINYGRQELADDLITKMLA---SDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDV 594 (963)
T ss_dssp HCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHH---CSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHH
T ss_pred ccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHH
Confidence 45677788888888887777777766655443332 334433333
Q ss_pred ---HHHHHHHHHhcCCcchhhhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccchhhh
Q psy11028 56 ---AVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLSC 128 (136)
Q Consensus 56 ---al~l~~~l~~~~p~~~~~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~s~sv 128 (136)
|+-.+-.|.-.+| +.+|.++++|.+..+|..--..--.|+.++..++ ..+.++.+....+..+.-+-
T Consensus 595 RraAViaLGlI~~g~~----e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~--~~~aid~L~~L~~D~d~~Vr 664 (963)
T 4ady_A 595 RRAAVIALGFVLLRDY----TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKG--LQSAIDVLDPLTKDPVDFVR 664 (963)
T ss_dssp HHHHHHHHHHHTSSSC----SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSC--CHHHHHHHHHHHTCSSHHHH
T ss_pred HHHHHHHHHhhccCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCC--cHHHHHHHHHHccCCCHHHH
Confidence 2222222222233 3577777777766666666656666666665544 23556666666555544433
No 111
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=77.50 E-value=5.6 Score=36.57 Aligned_cols=79 Identities=14% Similarity=0.256 Sum_probs=55.0
Q ss_pred HHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhh-----hHHHHHHHhcc------CCChhHHHH
Q psy11028 25 KVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLS-----LAPVFFKLMTT------SSNNWMLIK 93 (136)
Q Consensus 25 rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~-----lvp~lv~iL~~------v~~pWlqik 93 (136)
|....+|+.++..+.++.+.+.|+++||..+|...+..+++.=.+.+.. ..|.+-.++.+ --.|=-+..
T Consensus 555 ~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~ 634 (1073)
T 3gjx_A 555 RFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHT 634 (1073)
T ss_dssp HHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHH
Confidence 4666788888888899999999999999999999999998876554421 12222223321 135666777
Q ss_pred HHHHhhhcCC
Q psy11028 94 IIKLFGALTP 103 (136)
Q Consensus 94 iLk~L~~l~~ 103 (136)
+.+.++.+..
T Consensus 635 lyeav~~vi~ 644 (1073)
T 3gjx_A 635 FYEAVGYMIG 644 (1073)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 7777776653
No 112
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=76.77 E-value=2.6 Score=31.27 Aligned_cols=85 Identities=12% Similarity=0.003 Sum_probs=61.1
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhc
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMT 83 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~ 83 (136)
+.+...|.+.++|+-|+.+.+...+. +-.+...+.+...+.|++.=|--|+--.+.++++++|+.-..++ + .
T Consensus 129 i~~W~~s~~~w~rR~ai~~~l~~~~~--~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~fl----~--~ 200 (220)
T 2b6c_A 129 FALFYGAENFWNRRVALNLQLMLKEK--TNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEELM----K--E 200 (220)
T ss_dssp HHHHTTCSSHHHHHHHHHTTTTCGGG--CCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHH----H--H
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHHHH----h--h
Confidence 55677899999999999988644322 11233566677788999999999999999999999998555544 1 2
Q ss_pred cCCChhHHHHHHH
Q psy11028 84 TSSNNWMLIKIIK 96 (136)
Q Consensus 84 ~v~~pWlqikiLk 96 (136)
+.=++|..-+-++
T Consensus 201 ~~l~~~~~r~Aik 213 (220)
T 2b6c_A 201 LVLSPLAQREGSK 213 (220)
T ss_dssp SCCCHHHHHHHTT
T ss_pred ccCCHHHHHHHHH
Confidence 2345666655544
No 113
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=74.03 E-value=11 Score=34.54 Aligned_cols=91 Identities=10% Similarity=0.107 Sum_probs=61.9
Q ss_pred CCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhcCC-------CChhHHHHHHHHHHHHHhc-CCcchhhhH
Q psy11028 9 TSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLED-------PDSGVQSAAVNVVCELARK-NPKNYLSLA 75 (136)
Q Consensus 9 ~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL~D-------~d~~V~~aal~l~~~l~~~-~p~~~~~lv 75 (136)
.+.+++||.-|+..+-+.++++=..+. .+.+.+.+.+.. .++.|......++.+|++. .|+.|..++
T Consensus 57 ~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll 136 (1204)
T 3a6p_A 57 KTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDML 136 (1204)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHH
Confidence 467899999999999988876422221 234455555431 4567777777788888775 489999999
Q ss_pred HHHHHHhccCCChhHHHHHHHHhhhc
Q psy11028 76 PVFFKLMTTSSNNWMLIKIIKLFGAL 101 (136)
Q Consensus 76 p~lv~iL~~v~~pWlqikiLk~L~~l 101 (136)
+.+++.+.+ ++-...-.|++|..+
T Consensus 137 ~~L~~~~~~--~~~~~e~~L~iL~~L 160 (1204)
T 3a6p_A 137 IELDTLSKQ--GETQTELVMFILLRL 160 (1204)
T ss_dssp HHHHHHHHT--CHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC--CHHHHHHHHHHHHHH
Confidence 999999976 443333455555554
No 114
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=71.43 E-value=7.5 Score=31.08 Aligned_cols=91 Identities=11% Similarity=0.135 Sum_probs=55.8
Q ss_pred CCCChHHHHHHHHHHHHHHhHCCCCchh-------hH----HHHHhhcCC---CChhHHHHHHHHHHHHHhcCCcchhh-
Q psy11028 9 TSTKPYLRKKAVLMMYKVFLKFPDALRP-------AF----PRLKEKLED---PDSGVQSAAVNVVCELARKNPKNYLS- 73 (136)
Q Consensus 9 ~~s~~~VRKKA~l~~~rl~~~~P~~v~~-------~~----~~l~~lL~D---~d~~V~~aal~l~~~l~~~~p~~~~~- 73 (136)
....+-+|.+|+-.+....|.+|+.++. |+ +.+..++.. ..-.++=+-++.+.++.+.. ..|..
T Consensus 80 ~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~-~~F~~~ 158 (315)
T 3qml_C 80 ENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTS-EDLPIY 158 (315)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS-TTC--C
T ss_pred ccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcCh-Hhhhhc
Confidence 4467789999999999999988887762 33 333333322 33466667777777777665 32322
Q ss_pred hHHHHHHHhccCC--ChhHHHHHHHHhhhc
Q psy11028 74 LAPVFFKLMTTSS--NNWMLIKIIKLFGAL 101 (136)
Q Consensus 74 lvp~lv~iL~~v~--~pWlqikiLk~L~~l 101 (136)
=...|.+++. +. ++=.|+|++.++..+
T Consensus 159 ~m~~L~~ly~-~~~~d~~~k~Kvl~li~d~ 187 (315)
T 3qml_C 159 STVVLQNVYE-RNNKDKQLQIKVLELISKI 187 (315)
T ss_dssp CHHHHHHHHH-HTTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHc-cCCCCHHHHHHHHHHHHHH
Confidence 1244555553 24 666777777777643
No 115
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=70.33 E-value=34 Score=31.09 Aligned_cols=91 Identities=12% Similarity=0.088 Sum_probs=57.2
Q ss_pred CCCChHHHHHHHHHHHHHHhHCCCCc-----hhhHHHHHhhcC----CC-----ChhHHHHHHHHHHHHHh-cCCcchhh
Q psy11028 9 TSTKPYLRKKAVLMMYKVFLKFPDAL-----RPAFPRLKEKLE----DP-----DSGVQSAAVNVVCELAR-KNPKNYLS 73 (136)
Q Consensus 9 ~~s~~~VRKKA~l~~~rl~~~~P~~v-----~~~~~~l~~lL~----D~-----d~~V~~aal~l~~~l~~-~~p~~~~~ 73 (136)
++.++.+|-=|+..+-+.++++=..+ ....+.+.+.+. +. .+.|..-...++..+++ ..|+.|..
T Consensus 59 ~s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~ 138 (1023)
T 4hat_C 59 FSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPE 138 (1023)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTT
T ss_pred CCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchH
Confidence 35688999999988888877532222 123344444442 21 34555555666677766 45899999
Q ss_pred hHHHHHHHhccCCChhHHHHHHHHhhhc
Q psy11028 74 LAPVFFKLMTTSSNNWMLIKIIKLFGAL 101 (136)
Q Consensus 74 lvp~lv~iL~~v~~pWlqikiLk~L~~l 101 (136)
+++.+++.+.+ +|-.....|++|+.+
T Consensus 139 ~l~dL~~~l~~--~~~~~~~~L~iL~~L 164 (1023)
T 4hat_C 139 FIPELIGSSSS--SVNVCENNMIVLKLL 164 (1023)
T ss_dssp HHHHHHHHTTT--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC--CHHHHHHHHHHHHHH
Confidence 99999999964 344444456666554
No 116
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=70.31 E-value=4 Score=30.49 Aligned_cols=86 Identities=19% Similarity=0.091 Sum_probs=60.2
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhc
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMT 83 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~ 83 (136)
+.+...+.++++|+-|+.+....+.. +-.+...+.+...+.|++.=|--|.--.+-++.+++|+.-..++-.
T Consensus 136 l~~W~~s~~~w~rR~ai~~~l~~~~~--~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~fl~~------ 207 (232)
T 3jxy_A 136 IPKWIASDNIWLQRAAILFQLKYKQK--MDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYVQN------ 207 (232)
T ss_dssp HHHHHHSSCHHHHHHHHHTTTTCGGG--CCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHHHH------
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHhC--CCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH------
Confidence 45566899999999999987654322 1122355667788899999999999999999999999754444332
Q ss_pred cCCChhHHHHHHHH
Q psy11028 84 TSSNNWMLIKIIKL 97 (136)
Q Consensus 84 ~v~~pWlqikiLk~ 97 (136)
..-++|..-+-+|-
T Consensus 208 ~~l~~~~~r~A~k~ 221 (232)
T 3jxy_A 208 NELAPLSKREAIKH 221 (232)
T ss_dssp SCCCHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHh
Confidence 12356665555543
No 117
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=67.91 E-value=13 Score=33.20 Aligned_cols=63 Identities=8% Similarity=0.048 Sum_probs=51.4
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCc----h--hhHHHHHhhcCC--CChhHHHHHHHHHHHHHhc
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDAL----R--PAFPRLKEKLED--PDSGVQSAAVNVVCELARK 66 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v----~--~~~~~l~~lL~D--~d~~V~~aal~l~~~l~~~ 66 (136)
..+++++.+.-+|+-|+-++.-+---+|... + .+++.+..++.| .|+++..-++.++..+++.
T Consensus 659 LV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 659 LVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 3467889999999999988877766666533 2 367889999999 8999999999999999973
No 118
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=66.47 E-value=8.5 Score=28.82 Aligned_cols=95 Identities=11% Similarity=-0.079 Sum_probs=64.1
Q ss_pred hhhhcCCCChHHHHHHHH----HHHHHHhHCCC--CchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHH
Q psy11028 4 YFIYLTSTKPYLRKKAVL----MMYKVFLKFPD--ALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPV 77 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l----~~~rl~~~~P~--~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~ 77 (136)
+.+...+.+.++|+-|+. .+..+..+.++ -.+.+.+.+...+.|++.-|--|.--.+.++.+++|+.-..++-.
T Consensus 113 ~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~~~~~~al~~ 192 (235)
T 1t06_A 113 ADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYVPLHEKAVEI 192 (235)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 455668999999999998 43443333322 234467888889999999999999999999999999755555443
Q ss_pred HHHHhc--------cCCChhHHHHHHHHh
Q psy11028 78 FFKLMT--------TSSNNWMLIKIIKLF 98 (136)
Q Consensus 78 lv~iL~--------~v~~pWlqikiLk~L 98 (136)
.-++-. ++..|+...+|=+..
T Consensus 193 ~~~l~~~~~~~~~~~~~~~~A~~~i~~~~ 221 (235)
T 1t06_A 193 AKEVGIVEVKRDNKKSSLLNASESIQKEL 221 (235)
T ss_dssp HHHHCEEEEEETTEEEEEEEHHHHHHHHH
T ss_pred HHHhccccCCCCCCCCCCCChHHHHHHHH
Confidence 333322 234555555554443
No 119
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=66.15 E-value=37 Score=31.06 Aligned_cols=81 Identities=7% Similarity=0.102 Sum_probs=63.4
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHHHhHCC-CCchhhHHHHHhhcCCC-ChhHHHHHHHHHHHHHhcCCcchhhhHHHHHH
Q psy11028 3 GYFIYLTSTKPYLRKKAVLMMYKVFLKFP-DALRPAFPRLKEKLEDP-DSGVQSAAVNVVCELARKNPKNYLSLAPVFFK 80 (136)
Q Consensus 3 ~V~klL~~s~~~VRKKA~l~~~rl~~~~P-~~v~~~~~~l~~lL~D~-d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~ 80 (136)
.+...+.+..+.||+-|..|+.-++...| +.+....+.+.+.|.+. .--.-.+++.++..+++..|++.....|.++-
T Consensus 99 ~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p 178 (986)
T 2iw3_A 99 AICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIP 178 (986)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhc
Confidence 45667788999999999999999998755 57767888888888655 46778899999999999888876555555555
Q ss_pred Hhc
Q psy11028 81 LMT 83 (136)
Q Consensus 81 iL~ 83 (136)
++.
T Consensus 179 ~~~ 181 (986)
T 2iw3_A 179 VLS 181 (986)
T ss_dssp HHH
T ss_pred chH
Confidence 554
No 120
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=65.70 E-value=15 Score=33.14 Aligned_cols=61 Identities=13% Similarity=0.144 Sum_probs=43.4
Q ss_pred CCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhc-CCCChhHHHHHHHHHHHHHhcCCcc
Q psy11028 10 STKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKL-EDPDSGVQSAAVNVVCELARKNPKN 70 (136)
Q Consensus 10 ~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL-~D~d~~V~~aal~l~~~l~~~~p~~ 70 (136)
.++..||-+++.+++|++....+-+.++.+.+.+.| .+-+..-++..+.++-.+..+..+.
T Consensus 712 ~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~~~~~e~~~fL~l~~qli~~f~~~ 773 (980)
T 3ibv_A 712 GFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSIDMNELVDVLSFISQLIHIYKDN 773 (980)
T ss_dssp CCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHTTTT
T ss_pred CCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999987766666665544444 3335555777777777777766543
No 121
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=65.36 E-value=8.8 Score=35.00 Aligned_cols=81 Identities=11% Similarity=0.079 Sum_probs=56.7
Q ss_pred hhhhhcCCCC-hHHHHHHHHHHHHHHhHC-C-CCchhhHHHHHhhcCC------------CChhHHHHHHHHHHHHHhcC
Q psy11028 3 GYFIYLTSTK-PYLRKKAVLMMYKVFLKF-P-DALRPAFPRLKEKLED------------PDSGVQSAAVNVVCELARKN 67 (136)
Q Consensus 3 ~V~klL~~s~-~~VRKKA~l~~~rl~~~~-P-~~v~~~~~~l~~lL~D------------~d~~V~~aal~l~~~l~~~~ 67 (136)
-|.++|.|+. .-||..|+.++.-+++-. | ..+++.++.+.+.+.. ++.-...||+=-+++++...
T Consensus 847 ~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~ 926 (997)
T 1vsy_5 847 FVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAF 926 (997)
T ss_dssp HHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhC
Confidence 3678899999 999999999999888777 6 4455666666666522 11135566666677778888
Q ss_pred Ccch--hhhHHHHHHHhc
Q psy11028 68 PKNY--LSLAPVFFKLMT 83 (136)
Q Consensus 68 p~~~--~~lvp~lv~iL~ 83 (136)
|-.. .+.+|.+...|.
T Consensus 927 Py~vP~P~w~P~~l~~La 944 (997)
T 1vsy_5 927 PYVFPLPPWIPKNLSNLS 944 (997)
T ss_dssp SCCSSCCTHHHHHHHHHH
T ss_pred CCCCCCCcccHHHHHHHH
Confidence 7654 466777666665
No 122
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=63.20 E-value=47 Score=29.49 Aligned_cols=97 Identities=9% Similarity=0.055 Sum_probs=71.1
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHhHCC---CCchh-hHHHHHhhcCC---CChhHHHHHHHHHHHHHh--cCCcchhhhH
Q psy11028 5 FIYLTSTKPYLRKKAVLMMYKVFLKFP---DALRP-AFPRLKEKLED---PDSGVQSAAVNVVCELAR--KNPKNYLSLA 75 (136)
Q Consensus 5 ~klL~~s~~~VRKKA~l~~~rl~~~~P---~~v~~-~~~~l~~lL~D---~d~~V~~aal~l~~~l~~--~~p~~~~~lv 75 (136)
...+-+.+..+..-+.-|+..+....| +++-+ ..+++...|+. ..+==+.+++..+..++. .....|+.++
T Consensus 345 ~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~~~yr~hl 424 (799)
T 1vsy_4 345 SLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMDKLYRVHI 424 (799)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTSTTGGGHH
T ss_pred HHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcCcccHHHH
Confidence 344578899999999999999999999 98754 67999999876 556667777888877766 2334677766
Q ss_pred HHHHHH-hcc--CCChhHHHHHHHHhhhc
Q psy11028 76 PVFFKL-MTT--SSNNWMLIKIIKLFGAL 101 (136)
Q Consensus 76 p~lv~i-L~~--v~~pWlqikiLk~L~~l 101 (136)
+.+..+ |.| .+||-.-...++++..+
T Consensus 425 ~~lL~l~LpgID~ND~~KT~~tl~fi~~i 453 (799)
T 1vsy_4 425 TNVLSMLVSKLDMNDTNLTSNLINGIVSI 453 (799)
T ss_dssp HHHHHHHHHTCCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCcccHHHHHHHHHHHHHH
Confidence 665554 445 48887666666666544
No 123
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=61.29 E-value=9.5 Score=34.78 Aligned_cols=80 Identities=16% Similarity=0.138 Sum_probs=56.3
Q ss_pred hhhhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhH----HHHHhhcCCCChhHHHHHHHHHH--H---HHhcCCcchh
Q psy11028 2 LGYFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAF----PRLKEKLEDPDSGVQSAAVNVVC--E---LARKNPKNYL 72 (136)
Q Consensus 2 ~~V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~----~~l~~lL~D~d~~V~~aal~l~~--~---l~~~~p~~~~ 72 (136)
.|+.++=.|.-+-||+.|--++......+|..-...+ +.+...+.+.|+.-+-+|+-++. . .+.+|.+...
T Consensus 136 ~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~d~~~~~ 215 (997)
T 1vsy_5 136 VDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMTDYKDIG 215 (997)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGGCHHHHH
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhcChHHHH
Confidence 4666777788999999999999999999987665544 44444445788988888888765 2 2334544444
Q ss_pred hhHHHHHHH
Q psy11028 73 SLAPVFFKL 81 (136)
Q Consensus 73 ~lvp~lv~i 81 (136)
++.|.+++.
T Consensus 216 ~~~~ali~~ 224 (997)
T 1vsy_5 216 RLIFLLIEC 224 (997)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 555555554
No 124
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=61.14 E-value=63 Score=25.95 Aligned_cols=64 Identities=9% Similarity=0.091 Sum_probs=50.0
Q ss_pred hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhh---------------HHHHHHHhc--cCCChhHHHHHHHHh
Q psy11028 36 PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSL---------------APVFFKLMT--TSSNNWMLIKIIKLF 98 (136)
Q Consensus 36 ~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~l---------------vp~lv~iL~--~v~~pWlqikiLk~L 98 (136)
.++.++..+++..+.+|+-.|+.++.-++...+..|.-+ ...++.+|. +..+.=+|++-+-++
T Consensus 202 ~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLI 281 (339)
T 3dad_A 202 DTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLI 281 (339)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 378899999999999999999999999999887655422 346777886 457888888866655
Q ss_pred h
Q psy11028 99 G 99 (136)
Q Consensus 99 ~ 99 (136)
-
T Consensus 282 N 282 (339)
T 3dad_A 282 N 282 (339)
T ss_dssp H
T ss_pred H
Confidence 4
No 125
>2jby_A M11L protein; apoptosis; 2.41A {Myxoma virus} PDB: 2jbx_A 2o42_A
Probab=60.20 E-value=12 Score=26.30 Aligned_cols=29 Identities=21% Similarity=0.293 Sum_probs=23.5
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHHhc
Q psy11028 38 FPRLKEKLEDPDSGVQSAAVNVVCELARK 66 (136)
Q Consensus 38 ~~~l~~lL~D~d~~V~~aal~l~~~l~~~ 66 (136)
...+.-++.|..|||-.|+++++.-+.++
T Consensus 78 kn~l~~~l~D~rPSVkLAtisLLSiIIkK 106 (145)
T 2jby_A 78 KNTLTFALRDASPSVKLATLTLLASVIKK 106 (145)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 34466678899999999999999877663
No 126
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=58.66 E-value=36 Score=23.36 Aligned_cols=80 Identities=13% Similarity=0.121 Sum_probs=54.1
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCc------hhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCc-chhhhHH
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDAL------RPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK-NYLSLAP 76 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v------~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~-~~~~lvp 76 (136)
+.|.|+|.+|.+--.|...+=-+.+...... ..|.+.+.+++...++.|-.=.+.++.+-....++ .-...+.
T Consensus 47 i~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~ 126 (140)
T 3ldz_A 47 IMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKNDPQLSLIS 126 (140)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTCGGGTHHH
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCCCchHHH
Confidence 4566889999986666444333333333222 24788888888778999999999999888764432 2345677
Q ss_pred HHHHHhc
Q psy11028 77 VFFKLMT 83 (136)
Q Consensus 77 ~lv~iL~ 83 (136)
..++.|+
T Consensus 127 ~~Y~~Lk 133 (140)
T 3ldz_A 127 AMIKNLK 133 (140)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7888776
No 127
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=58.15 E-value=29 Score=30.73 Aligned_cols=94 Identities=13% Similarity=0.188 Sum_probs=60.1
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCchh----hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCc--chhhhHHH
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRP----AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK--NYLSLAPV 77 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~----~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~--~~~~lvp~ 77 (136)
|...|++.+.-||=-|+.++.-+. .|+.+.. .|+.+.++ +|-..| .++.+.++..++...+. ....++|.
T Consensus 304 VL~GL~D~DDDVRAVAAetLiPIA--~p~~l~~LL~iLWd~L~~L-DDLSAS-TgSVMdLLAkL~s~p~~a~~dp~LVPR 379 (800)
T 3oc3_A 304 LVSLLSSPDEDIKLLSAELLCHFP--ITDSLDLVLEKCWKNIESE-ELISVS-KTSNLSLLTKIYRENPELSIPPERLKD 379 (800)
T ss_dssp HHHHTTCSSHHHHHHHHHHHTTSC--CSSTHHHHHHHHHHHHHTC-CSCCTT-HHHHHHHHHHHHHHCTTCCCCSGGGGG
T ss_pred HHhhcCCcccHHHHHHHHHhhhhc--chhhHHHHHHHHHHHhhhh-cccchh-hHHHHHHHHHHHcCCcccccChHHHHH
Confidence 567789999999999999999888 6776665 45556655 453333 34456666777665543 22367888
Q ss_pred HHHHhccCCChhHHHHHHHHhhhcC
Q psy11028 78 FFKLMTTSSNNWMLIKIIKLFGALT 102 (136)
Q Consensus 78 lv~iL~~v~~pWlqikiLk~L~~l~ 102 (136)
++..|+. +-+=.--..|+.+..+.
T Consensus 380 L~PFLRH-tITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 380 IFPCFTS-PVPEVRTSILNMVKNLS 403 (800)
T ss_dssp TGGGGTC-SSHHHHHHHHHHTTTCC
T ss_pred HHhhhcC-CcHHHHHHHHHHHHHHH
Confidence 8877774 23333444455555544
No 128
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=57.51 E-value=27 Score=30.63 Aligned_cols=90 Identities=13% Similarity=0.109 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHhHCCC-CchhhHHHHHhhcCC-----CChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhccCC-
Q psy11028 14 YLRKKAVLMMYKVFLKFPD-ALRPAFPRLKEKLED-----PDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSS- 86 (136)
Q Consensus 14 ~VRKKA~l~~~rl~~~~P~-~v~~~~~~l~~lL~D-----~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~~v~- 86 (136)
.-||-|.-++.-++...++ .++...+.+.+.+.. .+....=|++..+..+++.-++.-...+|.++.++.+.+
T Consensus 436 ~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~ 515 (971)
T 2x1g_F 436 CYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPY 515 (971)
T ss_dssp HHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCc
Confidence 3677777777778877774 344566777766643 566777888888777765433323356666666664433
Q ss_pred ---ChhHHHHHHHHhhhcCC
Q psy11028 87 ---NNWMLIKIIKLFGALTP 103 (136)
Q Consensus 87 ---~pWlqikiLk~L~~l~~ 103 (136)
.|.+.-..+.+++.|+.
T Consensus 516 ~d~~~~vr~~a~~~l~~~~~ 535 (971)
T 2x1g_F 516 EKLNVKLLGTALETMGSYCN 535 (971)
T ss_dssp TTSCHHHHHHHHHHHHHTHH
T ss_pred cccCHHHHHHHHHHHHHHHH
Confidence 78888888888887763
No 129
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=54.92 E-value=60 Score=29.83 Aligned_cols=95 Identities=9% Similarity=0.045 Sum_probs=64.3
Q ss_pred hhc-CCCChHHHHHHHHHHHHHHhHCCCCch-----hhHHHHHhhc----CC-----CChhHHHHHHHHHHHHHhc-CCc
Q psy11028 6 IYL-TSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKL----ED-----PDSGVQSAAVNVVCELARK-NPK 69 (136)
Q Consensus 6 klL-~~s~~~VRKKA~l~~~rl~~~~P~~v~-----~~~~~l~~lL----~D-----~d~~V~~aal~l~~~l~~~-~p~ 69 (136)
.+| +++++++|-=|+..+-+.+++.=..++ .+.+.+.+.+ .+ .++.+..-...++.++.+. .|+
T Consensus 67 ~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~ 146 (1073)
T 3gjx_A 67 TILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK 146 (1073)
T ss_dssp CC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh
Confidence 344 346899999999999998887533232 2334444444 22 4678887777777788775 699
Q ss_pred chhhhHHHHHHHhccCCChhHHHHHHHHhhhcC
Q psy11028 70 NYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALT 102 (136)
Q Consensus 70 ~~~~lvp~lv~iL~~v~~pWlqikiLk~L~~l~ 102 (136)
.|..+++.+++.+.+ +|-.....|++|..+.
T Consensus 147 ~Wp~fi~dLv~~~~~--~~~~~~~~L~IL~~L~ 177 (1073)
T 3gjx_A 147 HWPTFISDIVGASRT--SESLCQNNMVILKLLS 177 (1073)
T ss_dssp TCTTHHHHHHHHHHH--CHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHhCC--CHHHHHHHHHHHHHHH
Confidence 999999999998864 4545555667776665
No 130
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=53.95 E-value=28 Score=30.75 Aligned_cols=112 Identities=8% Similarity=0.099 Sum_probs=72.5
Q ss_pred CCCChHHHHHHHHHHHHHHhHCCCC---chhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhccC
Q psy11028 9 TSTKPYLRKKAVLMMYKVFLKFPDA---LRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTS 85 (136)
Q Consensus 9 ~~s~~~VRKKA~l~~~rl~~~~P~~---v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~~v 85 (136)
.++.=-||.-+.+. +|-+ -|. ++...+.+...|.|.|--|-+.|...+..++ .|+....++..+.+.|.+.
T Consensus 273 ~~~~WEVRHGGLLG-LKYL---~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA--~p~~l~~LL~iLWd~L~~L 346 (800)
T 3oc3_A 273 DSGDWQVQFSGLIA-LGYL---KEFVEDKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP--ITDSLDLVLEKCWKNIESE 346 (800)
T ss_dssp GCSCHHHHHHHHHH-HHHT---GGGCCCHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC--CSSTHHHHHHHHHHHHHTC
T ss_pred CCCCeeehhhhHHH-HHHH---HHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc--chhhHHHHHHHHHHHhhhh
Confidence 33444455544444 4433 233 3446788889999999999999999999988 7777777888888888752
Q ss_pred ----CChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccchhh
Q psy11028 86 ----SNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLS 127 (136)
Q Consensus 86 ----~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~s~s 127 (136)
.+-=-...+|..|-.+++ +......+.+.+.+.++++.+++
T Consensus 347 DDLSASTgSVMdLLAkL~s~p~-~a~~dp~LVPRL~PFLRHtITSV 391 (800)
T 3oc3_A 347 ELISVSKTSNLSLLTKIYRENP-ELSIPPERLKDIFPCFTSPVPEV 391 (800)
T ss_dssp CSCCTTHHHHHHHHHHHHHHCT-TCCCCSGGGGGTGGGGTCSSHHH
T ss_pred cccchhhHHHHHHHHHHHcCCc-ccccChHHHHHHHhhhcCCcHHH
Confidence 222222334444434443 22222388899999999998864
No 131
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=50.56 E-value=61 Score=22.59 Aligned_cols=31 Identities=10% Similarity=0.124 Sum_probs=17.7
Q ss_pred hhhhHHHHHHHhccCCChhHHHHHHHHhhhcC
Q psy11028 71 YLSLAPVFFKLMTTSSNNWMLIKIIKLFGALT 102 (136)
Q Consensus 71 ~~~lvp~lv~iL~~v~~pWlqikiLk~L~~l~ 102 (136)
|..+..-+.+-|.. .+|-...|.|++|.+|.
T Consensus 47 ~~eim~~L~kRL~~-k~~~vk~KaL~lL~yL~ 77 (140)
T 1vdy_A 47 VKEFSEFILKRLDN-KSPIVKQKALRLIKYAV 77 (140)
T ss_dssp HHHHHHHHHHHHTS-SSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcC-CCcceeehHHHHHHHHH
Confidence 45556666666655 34445556666666655
No 132
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=49.80 E-value=62 Score=22.77 Aligned_cols=72 Identities=11% Similarity=0.193 Sum_probs=49.7
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhccCCChhHHHHHHHHhhhcCCC-ChHHH-----hhhHHHHHHH
Q psy11028 46 EDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPL-EPRLG-----KKLIEPLTNL 119 (136)
Q Consensus 46 ~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~-e~~~~-----~~l~e~l~~i 119 (136)
.+.|-+... -+|++++.++..=+..+-.+.+.|+. .+|+.|..-|.+|..+... .++.. +++.+.+..+
T Consensus 29 ~~~Dw~~~l----eicD~I~~~~~~~keA~ral~krl~~-~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l 103 (163)
T 1x5b_A 29 TTEDWSLIM----DICDKVGSTPNGAKDCLKAIMKRVNH-KVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAV 103 (163)
T ss_dssp SSCCHHHHH----HHHHHHHHSSSHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHH
T ss_pred CCcCHHHHH----HHHHHHhCCCccHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 345665544 46677777777666677777777765 7999999999999888643 23332 5677777777
Q ss_pred Hhc
Q psy11028 120 IHR 122 (136)
Q Consensus 120 L~~ 122 (136)
+..
T Consensus 104 ~~~ 106 (163)
T 1x5b_A 104 IKN 106 (163)
T ss_dssp HHT
T ss_pred Hcc
Confidence 764
No 133
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=46.82 E-value=32 Score=24.08 Aligned_cols=40 Identities=10% Similarity=0.140 Sum_probs=33.8
Q ss_pred CchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh
Q psy11028 33 ALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL 72 (136)
Q Consensus 33 ~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~ 72 (136)
......+.|.+.|.|+++-|..=++.++..++++-++.|.
T Consensus 46 ~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~ 85 (140)
T 1vdy_A 46 IVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFR 85 (140)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHH
T ss_pred HHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHH
Confidence 3466788899999999999999999999999987766554
No 134
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=44.01 E-value=30 Score=29.67 Aligned_cols=55 Identities=18% Similarity=0.208 Sum_probs=43.0
Q ss_pred CCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcC-CCChhHHHHHHHHHHHHHh
Q psy11028 9 TSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLE-DPDSGVQSAAVNVVCELAR 65 (136)
Q Consensus 9 ~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~-D~d~~V~~aal~l~~~l~~ 65 (136)
.+++..+||+|.-++.+++.+.|+-.. ..-++.+|. ..++||.+.+++.+-+-..
T Consensus 376 ~~P~~~lR~~a~~vl~~~I~~~~~e~R--~~iL~~LL~~~~~~~v~~~lI~~~KdeI~ 431 (596)
T 4f52_E 376 LCPIETLRKKSLAMLQLYINKLDSQGK--YTLFRCLLNTSNHSGVEAFIIQNIKNQID 431 (596)
T ss_dssp HCSCHHHHHHHHHHHHHHHHHBCHHHH--HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HCCcHHHHHHHHHHHHHHHHhCChHHH--HHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 578899999999999999999886422 334566664 4799999999999976543
No 135
>2bcx_B Ryanodine receptor 1; EF-hand, type-2 turn, calcium binding protein; 2.00A {Gallus gallus}
Probab=43.83 E-value=15 Score=19.26 Aligned_cols=13 Identities=23% Similarity=0.557 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHH
Q psy11028 15 LRKKAVLMMYKVF 27 (136)
Q Consensus 15 VRKKA~l~~~rl~ 27 (136)
=||+|+++..|+.
T Consensus 14 qRKRaVvacfrm~ 26 (30)
T 2bcx_B 14 QRRRAVVACFRMT 26 (30)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhc
Confidence 4899999988764
No 136
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=43.15 E-value=25 Score=25.14 Aligned_cols=52 Identities=8% Similarity=0.077 Sum_probs=41.7
Q ss_pred chhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhccCC
Q psy11028 34 LRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSS 86 (136)
Q Consensus 34 v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~~v~ 86 (136)
+++|-..+..+.+-+ |||..+=+.-++.++..|-+.+..++..+++..+..|
T Consensus 3 v~ef~~~L~sL~~lk-p~iS~skI~~LT~~A~~nv~~~~~iv~~l~~~ikk~p 54 (157)
T 3clj_A 3 FQNFVATLESFKDLK-SGISGSRIKKLTTYALDHIDIESKIISLIIDYSRLCP 54 (157)
T ss_dssp HHHHHHHHHGGGGCS-SSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCC
Confidence 345555666665444 9999999999999999999999999999999888643
No 137
>4gmj_A CCR4-NOT transcription complex subunit 1; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens} PDB: 4gml_A
Probab=42.91 E-value=27 Score=26.54 Aligned_cols=28 Identities=21% Similarity=0.615 Sum_probs=21.3
Q ss_pred hHHHHHHHhcc--------CCChhHHHHHHHHhhhcC
Q psy11028 74 LAPVFFKLMTT--------SSNNWMLIKIIKLFGALT 102 (136)
Q Consensus 74 lvp~lv~iL~~--------v~~pWlqikiLk~L~~l~ 102 (136)
.+|-+.++|.+ -|+||.. .||++|+-+-
T Consensus 147 viPFVcKvLe~~~~S~iFkPPNPW~~-~IL~lL~Ely 182 (229)
T 4gmj_A 147 VVPFVAKVLESSIRSVVFRPPNPWTM-AIMNVLAELH 182 (229)
T ss_dssp HHHHHHHHHHTTTTCTTTSTTCHHHH-HHHHHHHHHH
T ss_pred eehhHHHHHHhcccCCcCCCCChhHH-HHHHHHHHHH
Confidence 36777778874 3999997 8888888664
No 138
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=42.60 E-value=70 Score=23.51 Aligned_cols=67 Identities=12% Similarity=0.094 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHhHCCCCchh----hHHHHHhhcCC--CChhHHHHHHHHHHHHHhcCCcchhhhH-HHHHHHhc
Q psy11028 14 YLRKKAVLMMYKVFLKFPDALRP----AFPRLKEKLED--PDSGVQSAAVNVVCELARKNPKNYLSLA-PVFFKLMT 83 (136)
Q Consensus 14 ~VRKKA~l~~~rl~~~~P~~v~~----~~~~l~~lL~D--~d~~V~~aal~l~~~l~~~~p~~~~~lv-p~lv~iL~ 83 (136)
.+|.-|+-.+..+++++.+..+. ....+.+.+.| ++.+..-.|+.-+.++ -++..+.++ |.+-.+.+
T Consensus 105 ~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l---G~~~vr~~llP~l~~~~~ 178 (196)
T 4atg_A 105 DVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSIL---SKNVVNTVIREHAEEYKR 178 (196)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH---CHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHh---HHHHHHHhhhcCHHHHHH
Confidence 79999999999999998776655 44555666666 4566665555555444 445555543 66554443
No 139
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=41.78 E-value=16 Score=27.67 Aligned_cols=19 Identities=21% Similarity=0.289 Sum_probs=11.9
Q ss_pred HHHhhcCCCChhHHHHHHH
Q psy11028 40 RLKEKLEDPDSGVQSAAVN 58 (136)
Q Consensus 40 ~l~~lL~D~d~~V~~aal~ 58 (136)
.+..++.|+|+.|=.++..
T Consensus 102 ~L~~ll~D~d~~VR~~aA~ 120 (244)
T 1lrv_A 102 QLSALMFDEDREVRITVAD 120 (244)
T ss_dssp GGGGTTTCSCHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHH
Confidence 3556666777776666554
No 140
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=40.72 E-value=78 Score=20.99 Aligned_cols=110 Identities=8% Similarity=0.041 Sum_probs=65.8
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcC----Ccchhh-hHHHH
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN----PKNYLS-LAPVF 78 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~----p~~~~~-lvp~l 78 (136)
...-|+.+.+.|..-+..|+.+. +..++++ +-+.+.+....+.-=.+.+-++.+++++. +..|.+ +.+.+
T Consensus 13 ~L~~L~~s~~sI~~~s~w~l~h~-~~a~~Iv----~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~~~f~~~l 87 (132)
T 4flb_A 13 KFQSVTNTMESIQGLSSWCIENK-KHHSTIV----YHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFRESFADVL 87 (132)
T ss_dssp HHHHCCSSHHHHHHHHHHHHHTG-GGHHHHH----HHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHHHHHHTTH
T ss_pred HHHHCcccHHHHHHHHHHHHHhH-HHHHHHH----HHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHHHHHHHHH
Confidence 34556888899998888887642 2223333 33344444566777788999999998754 233433 44445
Q ss_pred HHHhccCCChhHHHHHHHHhhhcC---CCChHHHhhhHHHHHHHHhc
Q psy11028 79 FKLMTTSSNNWMLIKIIKLFGALT---PLEPRLGKKLIEPLTNLIHR 122 (136)
Q Consensus 79 v~iL~~v~~pWlqikiLk~L~~l~---~~e~~~~~~l~e~l~~iL~~ 122 (136)
..++..+.+|=.+-++.++|..-. -.++ ..++.+.+.|+.
T Consensus 88 ~~~~~~~~~~~~~~kl~~ll~iW~~r~vf~~----~~i~~L~~~L~~ 130 (132)
T 4flb_A 88 PEAAALVKDPSVSKSVERIFKIWEDRNVYPE----EMIVALREALST 130 (132)
T ss_dssp HHHHHTTCSTTTHHHHHHHHHHHHHHTSSCH----HHHHHHHHHHTS
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhccCCCcCH----HHHHHHHHHHhc
Confidence 555556666666667777666543 2333 345555555543
No 141
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=39.16 E-value=36 Score=32.22 Aligned_cols=78 Identities=14% Similarity=0.063 Sum_probs=56.6
Q ss_pred hhcCCCChHHHHHHHHHHHHHHhHCCCCch-hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHhc
Q psy11028 6 IYLTSTKPYLRKKAVLMMYKVFLKFPDALR-PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMT 83 (136)
Q Consensus 6 klL~~s~~~VRKKA~l~~~rl~~~~P~~v~-~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~ 83 (136)
.++.+.++.||--|.....-+|..+-+... ..+..+..-.++.+.+=+.+|+.++.+++..+|+.-..+..-+.+||-
T Consensus 407 ~Ll~S~~~~v~~Fg~~lY~~lF~~fd~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~~~l~~~a~~l~giLD 485 (1323)
T 3s4w_B 407 TLFHSQDQRIILFGSLLYKYAFKFFDTYCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLNASAMRLNAAFVKGILD 485 (1323)
T ss_dssp HHHTSSSHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHGGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCHHHHhHHHHHHHHHHH
Confidence 467889999999999998888887732222 355666666677777778889999999999998755555444444443
No 142
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=38.71 E-value=1.8e+02 Score=26.35 Aligned_cols=108 Identities=16% Similarity=0.240 Sum_probs=63.6
Q ss_pred hhhcCC----CChHHHHHHHHHHHHHHhHC----C----CCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchh
Q psy11028 5 FIYLTS----TKPYLRKKAVLMMYKVFLKF----P----DALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL 72 (136)
Q Consensus 5 ~klL~~----s~~~VRKKA~l~~~rl~~~~----P----~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~ 72 (136)
..++.+ +++++|+.|.+++-.+.+++ + +.++.+.+.+.+.+...|..-....+-.+--+. .|
T Consensus 397 ~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g--~p---- 470 (1056)
T 1lsh_A 397 RELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAG--QP---- 470 (1056)
T ss_dssp HHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--CG----
T ss_pred HHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccC--Ch----
Confidence 345544 67899999999987766542 2 335556677777776666555444443332222 23
Q ss_pred hhHHHHHHHhccC----C--ChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHh
Q psy11028 73 SLAPVFFKLMTTS----S--NNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIH 121 (136)
Q Consensus 73 ~lvp~lv~iL~~v----~--~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~ 121 (136)
..++.+..++.+. . .+-+++..+..|+.++..+|+. ..+.+.++..
T Consensus 471 ~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~---v~~il~~i~~ 522 (1056)
T 1lsh_A 471 NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK---VQEIVLPIFL 522 (1056)
T ss_dssp GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH---HHHHHHHHHH
T ss_pred hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH---HHHHHHHHhc
Confidence 2455666666532 1 2346666888888888766643 4445555553
No 143
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=34.08 E-value=47 Score=24.63 Aligned_cols=40 Identities=10% Similarity=-0.022 Sum_probs=33.0
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHHHHHhh
Q psy11028 5 FIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEK 44 (136)
Q Consensus 5 ~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~~l~~l 44 (136)
...++|...+|||-..-++.-+..++|+.+..+++...++
T Consensus 157 ~~~l~~~~~~v~kAi~W~Lr~~gk~~~~~~~~al~~~~~l 196 (235)
T 1t06_A 157 KDTIHHSPERTKSAMNNFLNTVAISYVPLHEKAVEIAKEV 196 (235)
T ss_dssp HHHGGGSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHccCChHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Confidence 3478899999999999999999999999999877644443
No 144
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=33.70 E-value=1.2e+02 Score=20.97 Aligned_cols=79 Identities=8% Similarity=0.052 Sum_probs=56.4
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCc------hhhHHHHHhhcCC------CChhHHHHHHHHHHHHHhcCCcch
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDAL------RPAFPRLKEKLED------PDSGVQSAAVNVVCELARKNPKNY 71 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v------~~~~~~l~~lL~D------~d~~V~~aal~l~~~l~~~~p~~~ 71 (136)
+.+.|+|.+|.+--.|...+=-+.+.+.... ..|.+.+.+++.+ .++.|-.-.+.++.+-....+..-
T Consensus 43 i~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p 122 (148)
T 1mhq_A 43 LAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFPEDI 122 (148)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 5667789999998887776666666554433 2488889999875 378898888888888877655321
Q ss_pred hhhHHHHHHHhcc
Q psy11028 72 LSLAPVFFKLMTT 84 (136)
Q Consensus 72 ~~lvp~lv~iL~~ 84 (136)
-+...++.|+.
T Consensus 123 --~i~~~y~~Lk~ 133 (148)
T 1mhq_A 123 --KIRDAYQMLKK 133 (148)
T ss_dssp --HHHHHHHHHHH
T ss_pred --hHHHHHHHHHH
Confidence 26777777773
No 145
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=33.20 E-value=46 Score=25.02 Aligned_cols=17 Identities=12% Similarity=-0.056 Sum_probs=9.9
Q ss_pred hhhcCCCChHHHHHHHH
Q psy11028 5 FIYLTSTKPYLRKKAVL 21 (136)
Q Consensus 5 ~klL~~s~~~VRKKA~l 21 (136)
..+++++++.||.-|+-
T Consensus 128 ~~L~~D~d~~VR~~aA~ 144 (244)
T 1lrv_A 128 EQMAADRDYLVRAYVVQ 144 (244)
T ss_dssp GGGTTCSSHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHH
Confidence 34456666666666654
No 146
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=32.88 E-value=85 Score=20.42 Aligned_cols=43 Identities=7% Similarity=0.061 Sum_probs=32.8
Q ss_pred hhHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHH
Q psy11028 36 PAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFK 80 (136)
Q Consensus 36 ~~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~ 80 (136)
.-.+.+.+.+. +||+.++-|+.-+.+..+.||+. ...+..+.+
T Consensus 51 ~Sl~~IG~~fg-RDHsTV~ha~~ki~~~~~~d~~l-~~~i~~l~~ 93 (101)
T 3pvv_A 51 LSLPKIGQAFG-RDHTTVMYAQRKILSEMAERREV-FDHVKELTT 93 (101)
T ss_dssp CCHHHHHHHTT-CCHHHHHHHHHHHHHHHHHCHHH-HHHHHHHHH
T ss_pred CCHHHHHHHHC-CCHHHHHHHHHHHHHHHHhCHHH-HHHHHHHHH
Confidence 35677889998 99999999999999999998753 333334433
No 147
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=30.65 E-value=1.6e+02 Score=23.21 Aligned_cols=48 Identities=23% Similarity=0.263 Sum_probs=28.1
Q ss_pred HHHHHHHHHHH-hHCCCC---chhhHHHHHh-hcCC--------CChhHHHHHHHHHHHHH
Q psy11028 17 KKAVLMMYKVF-LKFPDA---LRPAFPRLKE-KLED--------PDSGVQSAAVNVVCELA 64 (136)
Q Consensus 17 KKA~l~~~rl~-~~~P~~---v~~~~~~l~~-lL~D--------~d~~V~~aal~l~~~l~ 64 (136)
||-++.+...| ++.+|. .+.+++.+.+ .|.| ++|.|++...+++..+.
T Consensus 46 KkeiLkLiet~i~~~~d~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~ 106 (321)
T 1w9c_A 46 KRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLG 106 (321)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHH
Confidence 56666666555 444442 2345555543 4444 78888888777776654
No 148
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=29.21 E-value=1.4e+02 Score=20.61 Aligned_cols=78 Identities=6% Similarity=0.086 Sum_probs=54.5
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCc------hhhHHHHHhhcCC------CChhHHHHHHHHHHHHHhcCCcch
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDAL------RPAFPRLKEKLED------PDSGVQSAAVNVVCELARKNPKNY 71 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v------~~~~~~l~~lL~D------~d~~V~~aal~l~~~l~~~~p~~~ 71 (136)
+.+.++|.+|.+--.|...+=-+.+.+.... .+|.+.+.+++.+ .++.|-.=.+.++.+-....++.
T Consensus 53 l~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~- 131 (149)
T 3g2s_A 53 LAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEE- 131 (149)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTTC-
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhCCC-
Confidence 4567789999998888776666656554332 2478889999976 47788888888888887765532
Q ss_pred hhhHHHHHHHhc
Q psy11028 72 LSLAPVFFKLMT 83 (136)
Q Consensus 72 ~~lvp~lv~iL~ 83 (136)
+-+...|+.|+
T Consensus 132 -p~i~~~Y~~Lk 142 (149)
T 3g2s_A 132 -VKIAEAYQMLK 142 (149)
T ss_dssp -HHHHHHHHHHH
T ss_pred -chHHHHHHHHH
Confidence 11556666665
No 149
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=28.82 E-value=34 Score=21.34 Aligned_cols=13 Identities=15% Similarity=0.281 Sum_probs=6.2
Q ss_pred HHHHhHCCCCchh
Q psy11028 24 YKVFLKFPDALRP 36 (136)
Q Consensus 24 ~rl~~~~P~~v~~ 36 (136)
..+++.+|++++.
T Consensus 19 R~~vqqNP~lL~~ 31 (72)
T 1pve_A 19 RQIIQQNPSLLPA 31 (72)
T ss_dssp HHHHTTCGGGHHH
T ss_pred HHHHHHCHHHHHH
Confidence 3444555555444
No 150
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=27.64 E-value=1.1e+02 Score=24.91 Aligned_cols=73 Identities=12% Similarity=0.177 Sum_probs=51.1
Q ss_pred HHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHh-cCCcchhhhHHHHHHHhcc-CCChhHHH
Q psy11028 20 VLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELAR-KNPKNYLSLAPVFFKLMTT-SSNNWMLI 92 (136)
Q Consensus 20 ~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~-~~p~~~~~lvp~lv~iL~~-v~~pWlqi 92 (136)
+-|+..++.++|.+.+..+..+.+-==-.+..=-..-++-+.++.+ .+|..|.+...++.+.+.. +.+|=.||
T Consensus 235 ~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqV 309 (403)
T 3fga_B 235 AYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQV 309 (403)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHH
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHH
Confidence 4588889999999988877666555444566666667777777776 4677888888888887763 34444444
No 151
>2p9x_A Hypothetical protein PH0832; pyrococcus horikoshii OT3, NPPSFA, national project on prote structural and functional analyses; 1.65A {Pyrococcus horikoshii}
Probab=26.91 E-value=44 Score=22.03 Aligned_cols=56 Identities=18% Similarity=0.307 Sum_probs=34.3
Q ss_pred HHHHhcCCcchhhhHHHHHHHhccCCChhHHHHHHHHhh-hcC-CCChHHHhhhHHHHHHH
Q psy11028 61 CELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFG-ALT-PLEPRLGKKLIEPLTNL 119 (136)
Q Consensus 61 ~~l~~~~p~~~~~lvp~lv~iL~~v~~pWlqikiLk~L~-~l~-~~e~~~~~~l~e~l~~i 119 (136)
.|++-.+|+.|+..+..++.=.. +-.+-.-|...++ .++ +.|.+.-+++++.+..+
T Consensus 39 ~ElayeDP~kFkeaV~~LFGEys---arllem~i~~~~~~~L~l~~~~~~lE~lve~lkk~ 96 (99)
T 2p9x_A 39 IELAYDDPQKFKEAVSKLFGEYS---ARLLEMVIISKLKGRLGEDIEANSLEELVSEIRKI 96 (99)
T ss_dssp TTHHHHCHHHHHHHHHHHHCHHH---HHHHHHHHHHHHHHHSCTTCCCSSHHHHHHHHHHH
T ss_pred chhhhcCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHH
Confidence 57888999999988888776432 2333334555555 565 34444555666655544
No 152
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=26.71 E-value=36 Score=25.11 Aligned_cols=36 Identities=11% Similarity=0.039 Sum_probs=30.8
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHhHCCCCchhhHH
Q psy11028 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFP 39 (136)
Q Consensus 4 V~klL~~s~~~VRKKA~l~~~rl~~~~P~~v~~~~~ 39 (136)
+..+++|...||||-..=++.-+..++|+.+..|++
T Consensus 171 i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~fl~ 206 (232)
T 3jxy_A 171 IGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYVQ 206 (232)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 446778999999999999988888999999988775
No 153
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=24.99 E-value=1.1e+02 Score=21.29 Aligned_cols=42 Identities=10% Similarity=0.168 Sum_probs=19.7
Q ss_pred HHHHHhcCCcchhhhHHHHHHHhccCCChhHHHHHHHHhhhc
Q psy11028 60 VCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGAL 101 (136)
Q Consensus 60 ~~~l~~~~p~~~~~lvp~lv~iL~~v~~pWlqikiLk~L~~l 101 (136)
+|++...++..=+..+..+.+-|+.-++|+.|..-|.+|..+
T Consensus 40 icD~In~~~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~c 81 (152)
T 3rru_A 40 ICDIINTTQDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMC 81 (152)
T ss_dssp HHHHHHHSTTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 344444444444444444554444334555555444444444
No 154
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=24.29 E-value=1.4e+02 Score=18.90 Aligned_cols=45 Identities=9% Similarity=0.144 Sum_probs=33.8
Q ss_pred hHHHHHhhcCCCChhHHHHHHHHHHHHHhcCCcchhhhHHHHHHHh
Q psy11028 37 AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLM 82 (136)
Q Consensus 37 ~~~~l~~lL~D~d~~V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL 82 (136)
-.+.+.+.+..+||+-++-++.-+.+..+.||+ |...+..+.+.|
T Consensus 48 Sl~~IG~~fggrdHsTV~ha~~ki~~~~~~d~~-~~~~i~~l~~~l 92 (94)
T 1j1v_A 48 SLPEIGDAFGGRDHTTVLHACRKIEQLREESHD-IKEDFSNLIRTL 92 (94)
T ss_dssp CHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCHH-HHHHHHHHHHHH
Confidence 466788899899999999999999999988875 333444444433
No 155
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=23.72 E-value=1.4e+02 Score=22.00 Aligned_cols=66 Identities=15% Similarity=0.243 Sum_probs=43.8
Q ss_pred HHHHHHHhcCCcchhhhHHHHHHHhccCCChhHHHHHHHHhhhcCCCC-h----H-HHhhhHHHHHHHHhccc
Q psy11028 58 NVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLE-P----R-LGKKLIEPLTNLIHRII 124 (136)
Q Consensus 58 ~l~~~l~~~~p~~~~~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e-~----~-~~~~l~e~l~~iL~~~~ 124 (136)
--+++++..++..=+..+..+.+-|+. ++|..|..-|.+|..+..+= + . ..+++.+.+..++....
T Consensus 30 leicD~I~~~~~~~k~a~ral~krl~~-~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~ 101 (226)
T 3zyq_A 30 LQICDLIRQGDTQAKYAVNSIKKKVND-KNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQV 101 (226)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCC
Confidence 345666777776656777777777775 89999999888888774321 1 1 14556667777775433
No 156
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=23.32 E-value=1.7e+02 Score=24.19 Aligned_cols=65 Identities=12% Similarity=0.181 Sum_probs=44.3
Q ss_pred HHHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHh-cCCcchhhhHHHHHHHhcc
Q psy11028 20 VLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELAR-KNPKNYLSLAPVFFKLMTT 84 (136)
Q Consensus 20 ~l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~-~~p~~~~~lvp~lv~iL~~ 84 (136)
+-|+..++.++|.+.+..+..+.+-==-.|..=-..-++-+.++.+ ..|..|.+...++.+++..
T Consensus 268 ~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ 333 (449)
T 2npp_B 268 AYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAK 333 (449)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 3577788888888888766665544433455555556666777765 5677888888888777763
No 157
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis}
Probab=22.25 E-value=2.7e+02 Score=24.75 Aligned_cols=116 Identities=11% Similarity=0.165 Sum_probs=73.2
Q ss_pred cCCCChHHHHHHHHHHHHHHhHCCCCchh------------hHHHHHhhcCCC-----ChhHHHHHHHHHHHHHhcCCcc
Q psy11028 8 LTSTKPYLRKKAVLMMYKVFLKFPDALRP------------AFPRLKEKLEDP-----DSGVQSAAVNVVCELARKNPKN 70 (136)
Q Consensus 8 L~~s~~~VRKKA~l~~~rl~~~~P~~v~~------------~~~~l~~lL~D~-----d~~V~~aal~l~~~l~~~~p~~ 70 (136)
|.+....-|..+.-.++..++.+|..... ..+++.+++.++ +|.-+-|.+ -.++. ||..
T Consensus 718 l~~~~~~~~~~~~~~f~~~~~~~~~~~~k~~~~~a~~~~~~~~~~v~~l~~~~~f~~~npn~~r~l~---~~~~~-n~~~ 793 (867)
T 2gtq_A 718 VNGNESDTRNRLLAQFADKFSDDALVMDKYFALVGSSRRSDTLQQVRTALQHPKFSLENPNKARSLI---GSFSR-NVPH 793 (867)
T ss_dssp HTTCCSHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCCSTTHHHHHHHHTTSTTCCTTCHHHHHHHH---HHHHT-CHHH
T ss_pred HHhcCcccHHHHHHHHHHHHcCCchHHHHHHHHHhcCCChHHHHHHHHHhhCcCCCcCCchHHHHHH---HHHhh-Cccc
Confidence 43433456777777788888887765542 357778888774 454444433 33433 5544
Q ss_pred hh-------hhHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccc-hhhh
Q psy11028 71 YL-------SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRII-SLSC 128 (136)
Q Consensus 71 ~~-------~lvp~lv~iL~~v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~-s~sv 128 (136)
|- .+....+--|.. -||-.--++++.|......|+.-....-+.+..+....+ |+.|
T Consensus 794 fh~~~g~gy~~~~~~~~~l~~-~np~~a~r~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ls~~~ 858 (867)
T 2gtq_A 794 FHAEDGSGYRFIADKVIEIDR-FNPQVAARLVQAFNLCNKLEPHRKNLVKQALQRIRAQEGLSKDV 858 (867)
T ss_dssp HTCTTSHHHHHHHHHHHHHHT-TCHHHHHHHGGGGTTGGGBCHHHHHHHHHHHHHHHTSTTCCHHH
T ss_pred cCCCCCcHHHHHHHHHHHhcC-cCHHHHHHHHHHHhhhhccCHHHHHHHHHHHHHHHhCcCCCccH
Confidence 42 133333333334 599999999999999999888777777788888877643 4433
No 158
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=21.57 E-value=1.8e+02 Score=23.81 Aligned_cols=74 Identities=12% Similarity=0.113 Sum_probs=43.1
Q ss_pred hhhcCCCChHHHHHHHHHH-----HHHHhHCCCCc-hhhHHHHHhhcCC-CChhHHHHHHHHHHHHHhcCCcchhhhHHH
Q psy11028 5 FIYLTSTKPYLRKKAVLMM-----YKVFLKFPDAL-RPAFPRLKEKLED-PDSGVQSAAVNVVCELARKNPKNYLSLAPV 77 (136)
Q Consensus 5 ~klL~~s~~~VRKKA~l~~-----~rl~~~~P~~v-~~~~~~l~~lL~D-~d~~V~~aal~l~~~l~~~~p~~~~~lvp~ 77 (136)
.+++++++--|=-+|..-. ..++..+++.+ +-.++.+.+.... =|..|-..+.+++.-+.+.||+.|.++...
T Consensus 299 a~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~~lF~~~~~~ 378 (403)
T 3fga_B 299 AKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQ 378 (403)
T ss_dssp HHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHTTSCCCCCTTHHH
T ss_pred HHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 3455666655555544322 33444443322 2244555444333 388888888888888888888887776544
Q ss_pred H
Q psy11028 78 F 78 (136)
Q Consensus 78 l 78 (136)
.
T Consensus 379 ~ 379 (403)
T 3fga_B 379 F 379 (403)
T ss_dssp H
T ss_pred H
Confidence 3
No 159
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=21.42 E-value=1.7e+02 Score=21.67 Aligned_cols=33 Identities=15% Similarity=0.290 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhcCCcchhhhHHHHHHHhcc
Q psy11028 52 VQSAAVNVVCELARKNPKNYLSLAPVFFKLMTT 84 (136)
Q Consensus 52 V~~aal~l~~~l~~~~p~~~~~lvp~lv~iL~~ 84 (136)
+.-+++.++++=|-++|..|.++...++.|+++
T Consensus 171 ~Fqi~lk~LtdkClE~p~~~~~ls~tLv~il~~ 203 (204)
T 2jqq_A 171 EFQISLKILTEKCLENPSSLQNLSLTLVSIIKT 203 (204)
T ss_dssp HHHHHHHHHHHHHHHCTTTTHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhcCCccchhHHHHHHHHHhc
Confidence 345778888888888888888888888888753
No 160
>2zs0_D Extracellular giant hemoglobin major globin subun; annelida, magnesium, cooperativity, heme, iron, binding, oxygen transport, secreted; HET: HEM; 1.60A {Oligobrachia mashikoi} PDB: 2zfo_D* 2zs1_D* 2d2m_D* 2d2n_D*
Probab=21.38 E-value=1.9e+02 Score=19.41 Aligned_cols=19 Identities=11% Similarity=-0.085 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhHCCCCchh
Q psy11028 18 KAVLMMYKVFLKFPDALRP 36 (136)
Q Consensus 18 KA~l~~~rl~~~~P~~v~~ 36 (136)
-+...+.|++..+|+.-.-
T Consensus 31 ~g~~~~~rlF~~~P~~k~~ 49 (145)
T 2zs0_D 31 IGVAIFDVFFTSSGVSPSM 49 (145)
T ss_dssp HHHHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHHHHHCHHHHHh
Confidence 4567888999999998774
No 161
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=21.30 E-value=1.6e+02 Score=24.01 Aligned_cols=63 Identities=13% Similarity=0.185 Sum_probs=29.3
Q ss_pred HHHHHHHhHCCCCchhhHHHHHhhcCCCChhHHHHHHHHHHHHHh-cCCcchhhhHHHHHHHhc
Q psy11028 21 LMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELAR-KNPKNYLSLAPVFFKLMT 83 (136)
Q Consensus 21 l~~~rl~~~~P~~v~~~~~~l~~lL~D~d~~V~~aal~l~~~l~~-~~p~~~~~lvp~lv~iL~ 83 (136)
-|+..++.++|.+.+..+..+.+-==-.+..=-..-++-+.++.+ .+|+.|.+...++.+++.
T Consensus 281 ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f~~i~~~lF~~la 344 (392)
T 2jak_A 281 YCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLA 344 (392)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 455556666666665544444333211222222233444444443 344555555555555554
No 162
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=20.40 E-value=82 Score=23.47 Aligned_cols=28 Identities=21% Similarity=0.217 Sum_probs=20.6
Q ss_pred HHHHHHHHHhHCCCCchh--hHHHHHhhcC
Q psy11028 19 AVLMMYKVFLKFPDALRP--AFPRLKEKLE 46 (136)
Q Consensus 19 A~l~~~rl~~~~P~~v~~--~~~~l~~lL~ 46 (136)
|-+|++|+|+.+|+.... ....|.++|.
T Consensus 46 anlalLklYq~~p~~~~~~ii~~iLlk~L~ 75 (226)
T 1rz4_A 46 ANLAVLKLYQFNPAFFQTTVTAQILLKALT 75 (226)
T ss_dssp HHHHHHHHHHHSGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcccchhHHHHHHHHHHH
Confidence 688999999999988764 2355556653
No 163
>2vj4_A Protein MXIC, MXIC; secretion regulation, transport protein, T3SS, virulence, TR type three secretion system; HET: MLY; 2.50A {Shigella flexneri} PDB: 2vix_A* 2vj5_A
Probab=20.33 E-value=1.4e+02 Score=23.25 Aligned_cols=47 Identities=13% Similarity=0.017 Sum_probs=34.1
Q ss_pred CCChhHHHHHHHHhhhcCCCChHHHhhhHHHHHHHHhccchhhhhhhc
Q psy11028 85 SSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLSCWTGI 132 (136)
Q Consensus 85 v~~pWlqikiLk~L~~l~~~e~~~~~~l~e~l~~iL~~~~s~sv~~~~ 132 (136)
.||||.|.-.|+-|-.=.+.++...+.+.+.+.++.+. +...+-.|+
T Consensus 54 F~D~Sd~~~AL~~Ll~r~~l~~~~~~~l~~al~~le~~-~~~~i~aGi 100 (294)
T 2vj4_A 54 FXDPSDQVLALRELLNEXDLTAEQVELLTXIINEIISG-SEXSVNAGI 100 (294)
T ss_dssp CCSHHHHHHHHHHHTTCSCCCSSHHHHHHHHHHHHHTT-CHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhc-cchhhhhcc
Confidence 49999999999975322234455677888888888888 777666554
No 164
>3lb2_A Dehaloperoxidase A; globin, oxidoreductase; HET: HEM; 1.06A {Amphitrite ornata} SCOP: a.1.1.2 PDB: 1ewa_A* 1ew6_A* 2qfk_A* 3kun_A* 3lb1_A* 3dr9_A* 3lb3_A* 3lb4_A* 3mou_A* 3ord_A* 3mym_A* 3k3u_A* 3o7n_A* 3kuo_A* 2qfn_A* 3myn_A* 3oj1_A* 3ok5_A* 3ixf_A*
Probab=20.15 E-value=1.6e+02 Score=19.75 Aligned_cols=107 Identities=14% Similarity=0.182 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhHCCCCchhhHHHHHhhcCC---CChhHHHHHHHHHHHH---Hh--cCCcchhhhHHHHHH--HhccC
Q psy11028 16 RKKAVLMMYKVFLKFPDALRPAFPRLKEKLED---PDSGVQSAAVNVVCEL---AR--KNPKNYLSLAPVFFK--LMTTS 85 (136)
Q Consensus 16 RKKA~l~~~rl~~~~P~~v~~~~~~l~~lL~D---~d~~V~~aal~l~~~l---~~--~~p~~~~~lvp~lv~--iL~~v 85 (136)
..-....+.|++..+|+.-.- ++++..+=.+ .|+.+-.=+..++..+ +. .||+........|-+ .-++|
T Consensus 14 ~~~G~~~l~rlF~~~P~tk~~-F~~f~~~s~~~l~~n~~~~aHg~kV~~al~~~v~~ldd~~~l~~~l~~L~~~H~~~gV 92 (137)
T 3lb2_A 14 RTYAQDIFLAFLNKYPDERRY-FKNYVGKSDQELKSMAKFGDHTEKVFNLMMEVADRATDCVPLASDANTLVQMKQHSSL 92 (137)
T ss_dssp HHHHHHHHHHHHHHSGGGGGG-CTTTTTCCCC-CTTSHHHHHHHHHHHHHHHHHHHHCBTTBCCHHHHHHHHHCGGGTTC
T ss_pred HHHHHHHHHHHHHHCHHHHHH-hHHcCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCC
Confidence 345667889999999997653 3333221011 1233322222222222 22 344322222222221 00122
Q ss_pred -CChh--HHHHHHHHhhhcCC-CChHHHhhhHHHHHHHHhcc
Q psy11028 86 -SNNW--MLIKIIKLFGALTP-LEPRLGKKLIEPLTNLIHRI 123 (136)
Q Consensus 86 -~~pW--lqikiLk~L~~l~~-~e~~~~~~l~e~l~~iL~~~ 123 (136)
|..| +---++..|+.++. ....--+++++.+...|.++
T Consensus 93 ~p~~F~~l~~~ll~~L~~~~~~e~~~AW~k~~~~v~~~l~~~ 134 (137)
T 3lb2_A 93 TTGNFEKLFVALVEYMRASGQSFDSQSWDRFGKNLVSALSSA 134 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHc
Confidence 2222 22346666666664 33455677777777777654
Done!