RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11028
(136 letters)
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis,
clathrin adaptor, transport, coated PITS; 4.0A {Mus
musculus} SCOP: i.23.1.1
Length = 618
Score = 109 bits (274), Expect = 4e-29
Identities = 26/137 (18%), Positives = 57/137 (41%), Gaps = 17/137 (12%)
Query: 8 LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
L ++ YLRKKA L V K P+ + P K L + + GV +V ++ E+ ++
Sbjct: 151 LKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERS 210
Query: 68 P---KNYLSLAPVFFKLM--------------TTSSNNWMLIKIIKLFGALTPLEPRLGK 110
P ++ L P +++ + S+ ++ ++I++L L + +
Sbjct: 211 PDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE 270
Query: 111 KLIEPLTNLIHRIISLS 127
+ + L + +
Sbjct: 271 AMNDILAQVATNTETSK 287
Score = 27.9 bits (62), Expect = 1.1
Identities = 13/94 (13%), Positives = 32/94 (34%), Gaps = 5/94 (5%)
Query: 7 YLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARK 66
+L + +R A+ + K +A++ + + L+D D ++ A+ + L
Sbjct: 321 FLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALV-- 378
Query: 67 NPKNYLSLAPVFFKLMTTSSNNW---MLIKIIKL 97
N N + + + + I
Sbjct: 379 NGNNIRGMMKELLYFLDSCEPEFKADCASGIFLA 412
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative
splicing, endocytosis, lipid-binding, golgi apparatus,
adaptor, membrane, transport; HET: IHP; 2.59A {Homo
sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B
1w63_B
Length = 591
Score = 96.0 bits (239), Expect = 2e-24
Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 6/120 (5%)
Query: 8 LTSTKPYLRKKAVLMMYKVFLKFPDALRPA--FPRLKEKLEDPDSGVQSAAVNVVCELAR 65
L PY+RK A + + K+ + L++ + D + V + AV + E++
Sbjct: 130 LKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISE 189
Query: 66 KNPKNY-LSLAPVFFKLMTTS---SNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIH 121
+P + L L P + T+ W I I+ P + R + + E +T +
Sbjct: 190 SHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLS 249
Score = 37.8 bits (88), Expect = 4e-04
Identities = 17/93 (18%), Positives = 36/93 (38%)
Query: 7 YLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARK 66
Y T +KAV + + +K + L + ++ + V A+ V+ ++ RK
Sbjct: 361 YATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRK 420
Query: 67 NPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFG 99
P Y S+ + + + +I + G
Sbjct: 421 YPNKYESIIATLCENLDSLDEPDARAAMIWIVG 453
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle,
alternative splicing, endocytosis, lipid-binding, golgi
apparatus, adaptor, membrane, transport; HET: IHP; 2.59A
{Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Length = 621
Score = 95.0 bits (236), Expect = 6e-24
Identities = 28/133 (21%), Positives = 62/133 (46%), Gaps = 19/133 (14%)
Query: 10 STKPYLRKKAVLMMYKVFLKFPDALRPA--FPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
T +++ A L + +++ PD + R+ L D GV +AA +++ LA+KN
Sbjct: 159 DTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKN 218
Query: 68 PKNYLSLAP----VFFKLMTTSSNN------------WMLIKIIKLFGALTPLE-PRLGK 110
P+ + + +++T++S + W+ +K+++L P E P +
Sbjct: 219 PEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRG 278
Query: 111 KLIEPLTNLIHRI 123
+L E L ++++
Sbjct: 279 RLTECLETILNKA 291
Score = 30.7 bits (69), Expect = 0.13
Identities = 12/89 (13%), Positives = 29/89 (32%)
Query: 7 YLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARK 66
YL + +R++ VL + + K+ + + V V ++
Sbjct: 412 YLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVIN 471
Query: 67 NPKNYLSLAPVFFKLMTTSSNNWMLIKII 95
A F+ + + + L+K+
Sbjct: 472 RDDVQGYAAKTVFEALQAPACHENLVKVG 500
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure,
structural genomics; 2.20A {Pyrococcus horikoshii}
Length = 253
Score = 87.1 bits (215), Expect = 5e-22
Identities = 20/85 (23%), Positives = 35/85 (41%)
Query: 37 AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIK 96
+L E L+D V A++++ +A+ Y + F L+ S + +I K
Sbjct: 33 VLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAK 92
Query: 97 LFGALTPLEPRLGKKLIEPLTNLIH 121
FG + +P L K +I L
Sbjct: 93 AFGQMAKEKPELVKSMIPVLFANYR 117
Score = 48.5 bits (115), Expect = 7e-08
Identities = 16/62 (25%), Positives = 27/62 (43%)
Query: 8 LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
L+S + A+ + + + P PR+ L D D V+++AV + LA N
Sbjct: 153 LSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLN 212
Query: 68 PK 69
K
Sbjct: 213 DK 214
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane,
protein transport-prote binding complex; HET: GNP; 2.90A
{Bos taurus}
Length = 355
Score = 75.1 bits (184), Expect = 3e-17
Identities = 11/115 (9%), Positives = 37/115 (32%), Gaps = 3/115 (2%)
Query: 8 LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
+ P + A++ + D ++ +E + VQ A+ ++ + + +
Sbjct: 148 IVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKND 207
Query: 68 PKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLE-PRLGKKLIEPLTNLIH 121
+ F + + + +I++ E L + + + +
Sbjct: 208 RLAVSKMISKFTR--HGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLR 260
Score = 35.4 bits (81), Expect = 0.003
Identities = 18/121 (14%), Positives = 39/121 (32%), Gaps = 3/121 (2%)
Query: 8 LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKN 67
+T + R AV + ++ L+ +K+ + D V S+A+ L + +
Sbjct: 113 MTGKEDSYRGPAVRALCQITD--STMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCS 170
Query: 68 PKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLS 127
+ +S N + + L + + K+I T +
Sbjct: 171 FDVVKRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKNDRLAVSKMISKFTRHGLKSPFAY 229
Query: 128 C 128
C
Sbjct: 230 C 230
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 4e-05
Identities = 28/160 (17%), Positives = 55/160 (34%), Gaps = 49/160 (30%)
Query: 4 YF-----IYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSG--VQSAA 56
YF +Y T Y V + D ++ + L E + V +
Sbjct: 169 YFEELRDLYQT--------------YHVLVG--DLIKFSAETLSELIRTTLDAEKVFTQG 212
Query: 57 VNVVCELARKN---PKNYLSLAPVFFKLMT-TSSNNWMLIKIIKLFGALTP--LEPRL-- 108
+N++ L + K+YL P+ L+ ++++ KL G TP L L
Sbjct: 213 LNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVV--TAKLLG-FTPGELRSYLKG 269
Query: 109 ----GKKLI-----------EPLTNLIHRIISLSCWTGIK 133
+ L+ E + + I++ + G++
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR 309
Score = 31.9 bits (72), Expect = 0.055
Identities = 24/164 (14%), Positives = 41/164 (25%), Gaps = 72/164 (43%)
Query: 6 IYLTSTKPY--LRKKAVLMMYKVF-----------------LKFPDALRPAFPR------ 40
+ L + L+ K ++ F + + F R
Sbjct: 1736 LTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQV 1795
Query: 41 LKEKLEDPDSGVQSAAVN---------------VVCELARKNPK-----NY--------- 71
+ E S A+N VV + ++ NY
Sbjct: 1796 AVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVA 1855
Query: 72 ---------LSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEP 106
++ F KL I II+L +L+ LE
Sbjct: 1856 AGDLRALDTVTNVLNFIKLQK--------IDIIELQKSLS-LEE 1890
Score = 26.9 bits (59), Expect = 2.9
Identities = 10/86 (11%), Positives = 21/86 (24%), Gaps = 26/86 (30%)
Query: 14 YLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLS 73
+R+ M+++ + F + E ++ K LS
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTS---------------YTFRSEKGLLS 1727
Query: 74 L------APVFFKLMTTSSNNWMLIK 93
A L + +K
Sbjct: 1728 ATQFTQPA-----LTLMEKAAFEDLK 1748
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Length = 233
Score = 33.8 bits (77), Expect = 0.008
Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 10/100 (10%)
Query: 39 PRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLA-----PVFFKLMTTSSNNWMLIK 93
+L + L+ + VQ A + L ++ N L +A P +++ + + +
Sbjct: 55 LKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQ 114
Query: 94 IIKLFGALT---PLEPRLGKKLIEPLTNLIHRIISLSCWT 130
I L L+ L+ + + + LT I II S W
Sbjct: 115 ITGLLWNLSSNDKLKNLMITEALLTLTENI--IIPFSGWP 152
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein,
unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Length = 240
Score = 33.0 bits (74), Expect = 0.018
Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 8 LTSTKPYLRKKAV--LMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELAR 65
L S+ + R+ A L ++ F + A R+ + ED V+ + N + ++++
Sbjct: 148 LKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISK 207
Query: 66 KNP 68
K P
Sbjct: 208 KFP 210
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.10A {Escherichia coli} SCOP:
a.118.1.16
Length = 280
Score = 32.8 bits (75), Expect = 0.018
Identities = 10/119 (8%), Positives = 25/119 (21%), Gaps = 17/119 (14%)
Query: 8 LTSTKPYLRKKAVLMMYKVFLKFPDALR-----PAFPRLKEKLEDPDSGVQSAAVNVVCE 62
L R + L+ A E D + + ++ +
Sbjct: 32 LDDHNSLKRISSA-----------RVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQ 80
Query: 63 LARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIH 121
+ + + + + I+ P K++E
Sbjct: 81 IKICKKCEDNVFNIL-NNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAF 138
Score = 31.7 bits (72), Expect = 0.055
Identities = 8/50 (16%), Positives = 15/50 (30%)
Query: 8 LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAV 57
L +R A+ + K P + + D + V+ A
Sbjct: 100 LNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATA 149
Score = 29.8 bits (67), Expect = 0.24
Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 13 PYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCEL 63
Y ++KA K + + + L L+D +S + ++ V+
Sbjct: 4 TYQKRKAS----KEYGLYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLR 50
Score = 29.8 bits (67), Expect = 0.26
Identities = 9/56 (16%), Positives = 16/56 (28%), Gaps = 4/56 (7%)
Query: 8 LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCEL 63
L +R A + D E L+D + V+ A+ +
Sbjct: 168 LKDPNGDVRNWAAFAININKYDNSDIR----DCFVEMLQDKNEEVRIEAIIGLSYR 219
Score = 27.5 bits (61), Expect = 1.4
Identities = 10/67 (14%), Positives = 19/67 (28%), Gaps = 16/67 (23%)
Query: 8 LTSTKPYLRKKAVLMMYKVFLKFPDAL-----RPAFPRLKEKLEDPDSGVQSAAVNVVCE 62
+R+ A+ + P L L+DP+ V++ A +
Sbjct: 137 AFDKSTNVRRATA-----------FAISVINDKATIPLLINLLKDPNGDVRNWAAFAINI 185
Query: 63 LARKNPK 69
N
Sbjct: 186 NKYDNSD 192
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo
sapiens} SCOP: a.118.1.24
Length = 457
Score = 33.3 bits (75), Expect = 0.019
Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 10/100 (10%)
Query: 39 PRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLA-----PVFFKLMTTSSNNWMLIK 93
+L + L P+ VQ AA + L ++ N L L+ + N + +
Sbjct: 47 CKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQ 106
Query: 94 IIKLFGALTPLE---PRLGKKLIEPLTNLIHRIISLSCWT 130
+ L L+ + L + L + + II S W
Sbjct: 107 LTGLLWNLSSTDELKEELIADALPVLADRV--IIPFSGWC 144
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding;
HET: 1PE 12P; 2.15A {Synthetic}
Length = 211
Score = 32.7 bits (75), Expect = 0.022
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 8 LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELA 64
L ++R A + + + A+ L + L+D D V+ +A + + E+
Sbjct: 121 LKDEDWFVRIAAAFALGE--IGDERAV----EPLIKALKDEDGWVRQSAADALGEIG 171
Score = 32.3 bits (74), Expect = 0.027
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 7 YLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCEL 63
L ++R+ A + + + + A+ L + L+D D V+ AA + E+
Sbjct: 89 ALKDEDGWVRQSAAVALGQ--IGDERAV----EPLIKALKDEDWFVRIAAAFALGEI 139
Score = 31.2 bits (71), Expect = 0.079
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 6/50 (12%)
Query: 8 LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAV 57
L Y+R+ A K D A L + L+D D+ V+ AA
Sbjct: 28 LQDDSYYVRRAAA----YALGKIGDE--RAVEPLIKALKDEDAWVRRAAA 71
Score = 30.4 bits (69), Expect = 0.13
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 16/62 (25%)
Query: 8 LTSTKPYLRKKAVLMMYKVFLKFPDAL-----RPAFPRLKEKLEDPDSGVQSAAVNVVCE 62
L ++R+ A DAL A L + L+D D V+ +A + +
Sbjct: 59 LKDEDAWVRRAAA-----------DALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQ 107
Query: 63 LA 64
+
Sbjct: 108 IG 109
Score = 28.9 bits (65), Expect = 0.46
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 37 AFPRLKEKLEDPDSGVQSAAVNVVCEL 63
+ L+D V+ AA + ++
Sbjct: 20 KVEMYIKNLQDDSYYVRRAAAYALGKI 46
Score = 26.2 bits (58), Expect = 4.0
Identities = 3/21 (14%), Positives = 7/21 (33%)
Query: 37 AFPRLKEKLEDPDSGVQSAAV 57
+++ E + AV
Sbjct: 175 VRAAMEKLAETGTGFARKVAV 195
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger,
ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Length = 1230
Score = 33.2 bits (74), Expect = 0.023
Identities = 23/128 (17%), Positives = 43/128 (33%), Gaps = 15/128 (11%)
Query: 8 LTSTKPYLRKKAV-----LMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCE 62
+TS+ R A + D+ R + + LED + VQ+ AV +
Sbjct: 15 MTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGP 74
Query: 63 LARKNPKNYLS-LAPVFFKLMTTSSNNW---------MLIKIIKLFGALTPLEPRLGKKL 112
L K + + + M + +I + + + L + KK+
Sbjct: 75 LVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKI 134
Query: 113 IEPLTNLI 120
LT+ I
Sbjct: 135 TGRLTSAI 142
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding;
1.80A {Synthetic}
Length = 201
Score = 32.3 bits (74), Expect = 0.032
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 8 LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELA 64
L ++R A + + + A+ L + L+D D V+ +A + + E+
Sbjct: 116 LKDEDWFVRIAAAFALGE--IGDERAV----EPLIKALKDEDGWVRQSAADALGEIG 166
Score = 31.5 bits (72), Expect = 0.046
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 7 YLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCEL 63
L ++R+ A + + + + A+ L + L+D D V+ AA + E+
Sbjct: 84 ALKDEDGWVRQSAAVALGQ--IGDERAV----EPLIKALKDEDWFVRIAAAFALGEI 134
Score = 30.4 bits (69), Expect = 0.11
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 6/50 (12%)
Query: 8 LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAV 57
L Y+R+ A K D A L + L+D D+ V+ AA
Sbjct: 23 LQDDSYYVRRAAA----YALGKIGDE--RAVEPLIKALKDEDAWVRRAAA 66
Score = 30.0 bits (68), Expect = 0.16
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 16/55 (29%)
Query: 8 LTSTKPYLRKKAVLMMYKVFLKFPDAL-----RPAFPRLKEKLEDPDSGVQSAAV 57
L ++R+ A DAL A L + L+D D V+ +A
Sbjct: 54 LKDEDAWVRRAAA-----------DALGQIGDERAVEPLIKALKDEDGWVRQSAA 97
Score = 28.0 bits (63), Expect = 0.73
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 37 AFPRLKEKLEDPDSGVQSAAV 57
+ L+D V+ AA
Sbjct: 15 KVEMYIKNLQDDSYYVRRAAA 35
Score = 25.7 bits (57), Expect = 5.4
Identities = 3/21 (14%), Positives = 7/21 (33%)
Query: 37 AFPRLKEKLEDPDSGVQSAAV 57
+++ E + AV
Sbjct: 170 VRAAMEKLAETGTGFARKVAV 190
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule,
XMAP215, STU2, DIS1, microtubule associated protein,
structural protein; 1.90A {Caenorhabditis elegans}
Length = 266
Score = 32.1 bits (72), Expect = 0.041
Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 7 YLTSTKPYLRKKAVLMMYKVFLKFPDA---LRPAFPRLKEKLEDPDSGVQSAAVNVVCEL 63
L S R + +L++ + + + D D V++AA+NV+
Sbjct: 175 ALKSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVAC 234
Query: 64 AR 65
+
Sbjct: 235 FK 236
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum,
structural proteomics, heat-like repeat; NMR
{Methanothermobacterthermautotrophicus} SCOP:
a.118.1.16
Length = 131
Score = 30.7 bits (70), Expect = 0.059
Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 15/60 (25%)
Query: 8 LTSTKPYLRKKAVLMMYKVFLKFPDALR----PAFPRLKEKLEDPDSGVQSAAVNVVCEL 63
+ ++R+ AL AF L E L + D ++ AA ++
Sbjct: 21 MADENKWVRRDVS-----------TALSRMGDEAFEPLLESLSNEDWRIRGAAAWIIGNF 69
Score = 30.0 bits (68), Expect = 0.11
Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 16/55 (29%)
Query: 8 LTSTKPYLRKKAVLMMYKVFLKFPDAL-----RPAFPRLKEKLEDPDSGVQSAAV 57
L++ +R A + A L + LED V+S A
Sbjct: 51 LSNEDWRIRGAAA-----------WIIGNFQDERAVEPLIKLLEDDSGFVRSGAA 94
Score = 28.0 bits (63), Expect = 0.69
Identities = 6/50 (12%), Positives = 15/50 (30%), Gaps = 6/50 (12%)
Query: 8 LTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAV 57
L ++R A + + + +++ E + AV
Sbjct: 82 LEDDSGFVRSGAARSLEQ--IGGERVR----AAMEKLAETGTGFARKVAV 125
Score = 26.9 bits (60), Expect = 1.6
Identities = 2/23 (8%), Positives = 5/23 (21%)
Query: 35 RPAFPRLKEKLEDPDSGVQSAAV 57
+ D + V+
Sbjct: 11 SSGLVPRGSHMADENKWVRRDVS 33
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine
acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Length = 507
Score = 31.5 bits (70), Expect = 0.073
Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
Query: 5 FIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELA 64
+ ++ A + K F FP+ A + ED D ++ A+ + + A
Sbjct: 34 ILDGVKGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFA 93
Query: 65 RKNPKNYLSLAPVFFKLMTT 84
+N +A + +L+ T
Sbjct: 94 T--GENLPRVADILTQLLQT 111
>2rrl_A FLIK, flagellar HOOK-length control protein; FLHB, bacterial
flagella motor, P transport; NMR {Salmonella
typhimurium}
Length = 169
Score = 29.8 bits (66), Expect = 0.20
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 32 DALRPAFPRLKEKLEDPDSGVQSAAVNV 59
AL A P L+ +L +SG+Q ++
Sbjct: 125 AALEAALPMLRTQLA--ESGIQLGQSSI 150
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone;
2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Length = 296
Score = 30.0 bits (67), Expect = 0.21
Identities = 22/131 (16%), Positives = 41/131 (31%), Gaps = 14/131 (10%)
Query: 7 YLTSTKPYLRKKAVLMMYKVFLKFPDALRP-----AFPRLKEKLE-DPDSGVQSAAVNVV 60
YL + LR +A ++ A +L L+ D V+ A+ +
Sbjct: 90 YLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAI 149
Query: 61 CELARKNPKNYLSLA-----PVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEP 115
L R+ L V + M + +K L L P L
Sbjct: 150 SCLVREQEAGLLQFLRLDGFSVLMRAM-QQQVQKLKVKSAFLLQNLLVGHPEHKGTLCS- 207
Query: 116 LTNLIHRIISL 126
++ ++++L
Sbjct: 208 -MGMVQQLVAL 217
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein,
phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP:
a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A*
3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A
3c5w_A
Length = 588
Score = 30.0 bits (67), Expect = 0.26
Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 7/93 (7%)
Query: 32 DALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL--SLAPVFFKLMTTSSNNW 89
D+L P L ++L + D ++ ++ + +A L P + +
Sbjct: 7 DSLYP-IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI--YDEDE 63
Query: 90 MLIKIIKLFGALTPL--EPRLGKKLIEPLTNLI 120
+L+ + + G T L P L+ PL +L
Sbjct: 64 VLLALAEQLGTFTTLVGGPEYVHCLLPPLESLA 96
Score = 27.7 bits (61), Expect = 1.2
Identities = 16/118 (13%), Positives = 35/118 (29%), Gaps = 5/118 (4%)
Query: 8 LTSTKPYLRKKAVLMMYKV--FLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELAR 65
+ P +R+ A + + L+ + P D V+ AV +A+
Sbjct: 173 CSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQ 232
Query: 66 K-NPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPR--LGKKLIEPLTNLI 120
++ +L + + + + F L L+ NL+
Sbjct: 233 LLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLM 290
Score = 27.7 bits (61), Expect = 1.3
Identities = 13/96 (13%), Positives = 32/96 (33%), Gaps = 8/96 (8%)
Query: 30 FPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYL--SLAPVFFKLMTTSSN 87
F + L L D ++ AA + + +L K K + ++ P + N
Sbjct: 438 FDEKLNSLCMAW---LVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMS-GDPN 493
Query: 88 NWMLIKIIKLFGALTPL--EPRLGKKLIEPLTNLIH 121
+ + L+ + + K ++ + +
Sbjct: 494 YLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAG 529
Score = 26.9 bits (59), Expect = 2.7
Identities = 19/124 (15%), Positives = 41/124 (33%), Gaps = 11/124 (8%)
Query: 7 YLTSTKPYLRKKAVLMMYKVFLKFPDALRPAF------PRLKEKLEDPDSGVQSAAVNVV 60
+ + +R A + + R P +KE + D + V+SA +V+
Sbjct: 289 LMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVI 348
Query: 61 CELARKNPKNYLS--LAPVFFKLMTTSSNN--WMLIKIIKLFGALTPLEPRLGKKLIEPL 116
L+ K+ L P+F + +I + + + + L+ +
Sbjct: 349 MGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLS-QSLLPAI 407
Query: 117 TNLI 120
L
Sbjct: 408 VELA 411
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat,
micro plus END, +TIP, protein binding; 2.10A {Drosophila
melanogaster}
Length = 242
Score = 29.2 bits (65), Expect = 0.32
Identities = 9/60 (15%), Positives = 23/60 (38%), Gaps = 6/60 (10%)
Query: 13 PYLRKKAVLMMYKVFLKF------PDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARK 66
P ++ + L + + + L+ L + L +PD V+ ++ + L +
Sbjct: 147 PSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206
Score = 25.7 bits (56), Expect = 4.8
Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 4/93 (4%)
Query: 32 DALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARKNPK----NYLSLAPVFFKLMTTSSN 87
D L +KLE+ ++ ++ V+ +L +PK Y +L K++T SN
Sbjct: 11 DILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSN 70
Query: 88 NWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLI 120
++ K L + +
Sbjct: 71 VVLVAMAGKCLALLAKGLAKRFSNYASACVPSL 103
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats,
cell adhesion-CE complex; 3.01A {Homo sapiens}
Length = 458
Score = 29.2 bits (65), Expect = 0.38
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 37 AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKN 70
L + L+ + S A + L+ +NPK+
Sbjct: 380 CLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKD 413
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex,
transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1
PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A
1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A
1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Length = 529
Score = 29.0 bits (65), Expect = 0.49
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 37 AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLA-----PVFFKLMTTSSN 87
A P L + L D D V + A +V +L++K + + + M +++
Sbjct: 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND 73
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator,
alternative splicing, cell adhesion, cytoplasm,
cytoskeleton, disease mutation, nucleus; 2.20A {Homo
sapiens}
Length = 644
Score = 28.7 bits (64), Expect = 0.54
Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 39 PRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLA-----PVFFKLMTTSSN 87
P L + L D D V + A +V +L++K + + + M +++
Sbjct: 17 PELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND 70
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio
rerio}
Length = 780
Score = 28.8 bits (64), Expect = 0.61
Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 39 PRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLA-----PVFFKLMTTSSN 87
P L + L D D V + A +V +L++K + + + M +++
Sbjct: 153 PELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND 206
Score = 26.1 bits (57), Expect = 4.6
Identities = 14/107 (13%), Positives = 38/107 (35%), Gaps = 13/107 (12%)
Query: 37 AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLA-----PVFFKLMTTSSNN--- 88
++ L + + + + LA N ++ L + +M T +
Sbjct: 277 GLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLL 336
Query: 89 WMLIKIIKLFGALTPLEPRLGK-KLIEPLTNLIH----RIISLSCWT 130
W +++K+ + +P + + ++ L + R++ WT
Sbjct: 337 WTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 383
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 0.65
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 8/28 (28%)
Query: 41 LKEKLED------PDSGVQSAAVNVVCE 62
LK KL+ DS + A+ E
Sbjct: 22 LK-KLQASLKLYADDSA-PALAIKATME 47
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A
{Synthetic construct}
Length = 252
Score = 28.4 bits (64), Expect = 0.73
Identities = 18/113 (15%), Positives = 41/113 (36%), Gaps = 29/113 (25%)
Query: 39 PRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLA-----PVFFKLMTTSSNN----- 88
P L + L P+ + A+ + +A + ++ P +L+++ +
Sbjct: 57 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 116
Query: 89 -WML----------IKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLSCWT 130
W L I+ + GAL L++ L++ +I+ + W
Sbjct: 117 LWALSNIASGGNEQIQAVIDAGALPA--------LVQLLSSPNEQILQEALWA 161
Score = 25.7 bits (57), Expect = 5.4
Identities = 9/55 (16%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 37 AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLA-----PVFFKLMTTSS 86
A P L + L P+ + A+ + +A + ++ P +L+++ +
Sbjct: 139 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN 193
Score = 25.7 bits (57), Expect = 5.8
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 37 AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKN 70
A P L + L P+ + A+ + +A +
Sbjct: 181 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 214
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell
cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A
3au3_A 3qhe_A
Length = 354
Score = 28.3 bits (63), Expect = 0.92
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 37 AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKN 70
L + L+ + S A + L+ +NPK+
Sbjct: 264 CLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKD 297
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton,
microtubule, tubul domain, hydrolase; HET: GTP; 2.88A
{Saccharomyces cerevisiae}
Length = 278
Score = 27.8 bits (61), Expect = 1.1
Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 7/84 (8%)
Query: 4 YFIYLTSTKPYLRKKAVLMMYKVFLKF---PDALRPAFPRLKEKL----EDPDSGVQSAA 56
+ P L A +Y++ F ++ P L + + D V+S
Sbjct: 144 VIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQT 203
Query: 57 VNVVCELARKNPKNYLSLAPVFFK 80
+N++ E+ + N L + FK
Sbjct: 204 MNLIVEIYKVTGNNSDLLEEILFK 227
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion,
complex, cell-CELL adhesion, ARVCF, delta-catenin DP120,
JAC-1, cell membrane, membrane; 2.40A {Homo sapiens}
PDB: 3l6y_A
Length = 584
Score = 28.0 bits (61), Expect = 1.2
Identities = 17/104 (16%), Positives = 38/104 (36%), Gaps = 11/104 (10%)
Query: 37 AFPRLKEKLEDPDSGVQSAAVNVVCELA-RKNPKNYLSLA-----PVFFKLMTTSSNNWM 90
P L L+ P V A + ++ ++ N +++ P +L+ + + +
Sbjct: 91 GIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDL 150
Query: 91 LIKIIKLFGALT---PLEPRLGKKLIEPLTNLIHRIISLSCWTG 131
I L+ ++ + + LT+ + II S W
Sbjct: 151 TEVITGTLWNLSSHDSIKMEIVDHALHALTDEV--IIPHSGWER 192
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat
motif, de novo protein; 1.80A {Synthetic construct}
PDB: 4db9_A 4dba_A
Length = 210
Score = 27.2 bits (61), Expect = 1.4
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 37 AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKN 70
A P L + L P+ + A+ + +A +
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.5 bits (60), Expect = 1.5
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 62 ELARKNPKNYLSLAPVFFKLMTTSSNNWMLI------KIIKLFGALTPLEPRLGKKLIEP 115
E+ NP+ LS+ + + +NW + II+ L LEP +K+ +
Sbjct: 321 EVLTTNPR-RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS--LNVLEPAEYRKMFDR 377
Query: 116 LT 117
L+
Sbjct: 378 LS 379
Score = 27.1 bits (59), Expect = 2.4
Identities = 18/113 (15%), Positives = 37/113 (32%), Gaps = 41/113 (36%)
Query: 25 KVFLKFPDALRPAFPRLKEKLE--DPDSGV---------QSAAVNVVC---ELARKNPKN 70
+VF K+ + + +L++ L P V ++ VC ++ K
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183
Query: 71 YLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRI 123
+F W+ +K P ++E L L+++I
Sbjct: 184 ------IF----------WLNLKNCN--------SPET---VLEMLQKLLYQI 209
>4e9i_A Glucose-6-phosphate 1-dehydrogenase; pentose phosphate pathway,
alpha beta, NAD(P) rossmann-like domain, oxidoreductase;
2.85A {Trypanosoma cruzi} PDB: 4em5_A*
Length = 541
Score = 27.2 bits (61), Expect = 2.1
Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 16/72 (22%)
Query: 37 AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFFKL---------MTTSSN 87
F RL E++ + Q N YL+L P F M
Sbjct: 142 DFARLNERILRMEEAFQGPE-------KGGNRLFYLALPPSVFVGVCRGLSKGAMQKPEL 194
Query: 88 NWMLIKIIKLFG 99
W+ + + K FG
Sbjct: 195 GWVRLIVEKPFG 206
>1dpg_A G6PD, glucose 6-phosphate dehydrogenase; oxidoreductase, NADP/NAD,
glucose metabolism, oxidoreductase (CHOH(D) - NAD(P));
2.00A {Leuconostoc mesenteroides} SCOP: c.2.1.3 d.81.1.5
PDB: 1e7y_A* 1e7m_A* 1h93_A 1h94_A* 1h9a_A* 1e77_A*
1h9b_A 2dpg_A*
Length = 485
Score = 26.7 bits (60), Expect = 2.6
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 10/43 (23%)
Query: 37 AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFF 79
++ LKE +E+ N + Y+S+AP FF
Sbjct: 91 SYAVLKEAIEEAADKFDIDG-NRIF---------YMSVAPRFF 123
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding,
acetylation, GTP-binding, HOST-virus interaction,
nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus
musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Length = 1073
Score = 26.4 bits (57), Expect = 3.5
Identities = 16/124 (12%), Positives = 37/124 (29%), Gaps = 18/124 (14%)
Query: 20 VLMMYKVFLK-FPDALRPAFPRLKEKLEDPDSGVQSAAVNVV--------CELARKNPKN 70
++ Y FL+ L+ +L E + + GVQ A + +
Sbjct: 549 IVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGE 608
Query: 71 YLSLAPVFFKLMTTSSNNWMLIKIIKLFGAL---------TPLEPRLGKKLIEPLTNLIH 121
+ + T + ++ + A+ ++ L +K + +
Sbjct: 609 VMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWD 668
Query: 122 RIIS 125
II
Sbjct: 669 SIIQ 672
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat
repeat, transcription factor, nucleus; 2.85A
{Saccharomyces cerevisiae}
Length = 649
Score = 26.4 bits (57), Expect = 3.6
Identities = 16/109 (14%), Positives = 37/109 (33%), Gaps = 6/109 (5%)
Query: 28 LKFPDALRPAFPRLKEKLEDPDSGVQSAA--VNVVCELARKNPKNYLSLAPVFFKLMTTS 85
++F D+ + +E ++ S + + + +L + + +A L + +
Sbjct: 48 VQFSDSTGLVTLQPEEIKDEVFSAAMYSRFVKSALDDLDKNDSTQIGIIANQV-ALPSKN 106
Query: 86 SNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRIISLSCWTGIKP 134
+ L L+ R+ L I II+ W + P
Sbjct: 107 PERINDKNLNILLDILSSNINRIESSRGTFL---IQSIINFEKWWELPP 152
>3grl_A General vesicular transport factor P115; vesicle transport,
membrane trafficking, membrane tethering, fusion, snare,
RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB:
3gq2_A 2w3c_A
Length = 651
Score = 26.2 bits (57), Expect = 3.9
Identities = 11/68 (16%), Positives = 25/68 (36%), Gaps = 7/68 (10%)
Query: 8 LTSTKPYLRKKAVLMMYKVFLKFPDALRPAF-------PRLKEKLEDPDSGVQSAAVNVV 60
L ++R V ++ + + ++ RL + L D +++ V ++
Sbjct: 131 LEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLL 190
Query: 61 CELARKNP 68
L R N
Sbjct: 191 QALTRSNG 198
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats,
hypothetical, unknown function; 2.20A {Thermococcus
onnurineus}
Length = 265
Score = 25.9 bits (56), Expect = 4.6
Identities = 14/92 (15%), Positives = 33/92 (35%), Gaps = 7/92 (7%)
Query: 37 AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAP--VFFKLM--TTSSNNWMLI 92
A + E + D + A + E+ ++ + + + + N + I
Sbjct: 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTI 93
Query: 93 KIIKLFGAL---TPLEPRLGKKLIEPLTNLIH 121
K ++ G L P+ + K + L +L+
Sbjct: 94 KALRALGYLVKDVPMGSKTFLKAAKTLVSLLE 125
>2bh9_A G6PD, glucose-6-phosphate 1-dehydrogenase; oxidoreductase,
oxidoreductase (CHOH(D)-NADP), carbohydrate metabolism,
glucose metabolism; HET: NAP; 2.5A {Homo sapiens} PDB:
2bhl_A* 1qki_A*
Length = 489
Score = 25.9 bits (58), Expect = 5.5
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 12/43 (27%)
Query: 37 AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLAPVFF 79
++ RL + G Q+ N + YL+L P +
Sbjct: 91 SYQRLNSHMNALHLGSQA---NRLF---------YLALPPTVY 121
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.139 0.422
Gapped
Lambda K H
0.267 0.0509 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,081,855
Number of extensions: 112427
Number of successful extensions: 409
Number of sequences better than 10.0: 1
Number of HSP's gapped: 402
Number of HSP's successfully gapped: 80
Length of query: 136
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 52
Effective length of database: 4,356,429
Effective search space: 226534308
Effective search space used: 226534308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.3 bits)