RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11028
(136 letters)
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 74.0 bits (181), Expect = 4e-17
Identities = 28/138 (20%), Positives = 62/138 (44%), Gaps = 19/138 (13%)
Query: 8 LTSTKPYLRKKAVLMMYKVFLKFPDALRPA--FPRLKEKLEDPDSGVQSAAVNVVCELAR 65
T +++ A L + +++ PD + R+ L D GV +AA +++ LA+
Sbjct: 149 AGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQ 208
Query: 66 KNPKNYLSLAP----VFFKLMTTSSNN------------WMLIKIIKLFGALTPLE-PRL 108
KNP+ + + +++T++S + W+ +K+++L P E P +
Sbjct: 209 KNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAV 268
Query: 109 GKKLIEPLTNLIHRIISL 126
+L E L ++++
Sbjct: 269 RGRLTECLETILNKAQEP 286
Score = 37.8 bits (87), Expect = 2e-04
Identities = 12/89 (13%), Positives = 29/89 (32%)
Query: 7 YLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARK 66
YL + +R++ VL + + K+ + + V V ++
Sbjct: 404 YLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVIN 463
Query: 67 NPKNYLSLAPVFFKLMTTSSNNWMLIKII 95
A F+ + + + L+K+
Sbjct: 464 RDDVQGYAAKTVFEALQAPACHENLVKVG 492
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
{Human (Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 65.6 bits (159), Expect = 3e-14
Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 6/121 (4%)
Query: 8 LTSTKPYLRKKAVLMMYKVFLKFPDALRPA--FPRLKEKLEDPDSGVQSAAVNVVCELAR 65
L PY+RK A + + K+ + L++ + D + V + AV + E++
Sbjct: 127 LKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISE 186
Query: 66 KNP-KNYLSLAPVFFKLMTTS---SNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIH 121
+P N L L P + T+ W I I+ P + R + + E +T +
Sbjct: 187 SHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLS 246
Query: 122 R 122
Sbjct: 247 H 247
Score = 45.2 bits (106), Expect = 5e-07
Identities = 20/115 (17%), Positives = 41/115 (35%), Gaps = 1/115 (0%)
Query: 7 YLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARK 66
Y T +KAV + + +K + L + ++ + V A+ V+ ++ RK
Sbjct: 358 YATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRK 417
Query: 67 NPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIH 121
P Y S+ + + + +I + G +L+E H
Sbjct: 418 YPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNA-DELLESFLEGFH 471
Score = 34.4 bits (78), Expect = 0.003
Identities = 18/120 (15%), Positives = 42/120 (35%), Gaps = 3/120 (2%)
Query: 4 YFIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCEL 63
F + Y++ + + +M + L + LKE + D AV +
Sbjct: 320 VFFVKYNDPIYVKLEKLDIMIR--LASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRC 377
Query: 64 ARKNPKNYLSLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEPLTNLIHRI 123
A K ++ L+ + N+++ + I + + P + +I L + +
Sbjct: 378 AIKVEQSAERCVSTLLDLI-QTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSL 436
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein
1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}
Length = 1207
Score = 35.9 bits (81), Expect = 8e-04
Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 15/130 (11%)
Query: 8 LTSTKPYLRKKAVLMMYKVFLKF-----PDALRPAFPRLKEKLEDPDSGVQSAAVNVVCE 62
+TS+ R A + K D+ R + + LED + VQ+ AV +
Sbjct: 12 MTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGP 71
Query: 63 LARKNPKNYL-SLAPVFFKLMTTSSNN---------WMLIKIIKLFGALTPLEPRLGKKL 112
L K + + ++ M + +I + + + L + KK+
Sbjct: 72 LVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKI 131
Query: 113 IEPLTNLIHR 122
LT+ I +
Sbjct: 132 TGRLTSAIAK 141
Score = 30.9 bits (68), Expect = 0.046
Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 13/128 (10%)
Query: 5 FIYLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELA 64
+ + R + K+ L P+ L PRLK L S +S+ V V
Sbjct: 934 LKHCECAEEGTRNVVAECLGKLTLIDPETL---LPRLKGYLISGSSYARSSVVTAVKFTI 990
Query: 65 RKNPKNYL----SLAPVFFKLMTTSSNNWMLIKIIKLFGALTPLEPRLGKKLIEP-LTNL 119
+P+ + F K + + + + F + +P LI L +
Sbjct: 991 SDHPQPIDPLLKNCIGDFLKTL-EDPDLNVRRVALVTFNSAAHNKP----SLIRDLLDTV 1045
Query: 120 IHRIISLS 127
+ + + +
Sbjct: 1046 LPHLYNET 1053
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId:
9606]}
Length = 529
Score = 32.6 bits (72), Expect = 0.011
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 5/71 (7%)
Query: 37 AFPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLSLA-----PVFFKLMTTSSNNWML 91
A P L + L D D V + A +V +L++K + + + M +++
Sbjct: 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 77
Query: 92 IKIIKLFGALT 102
L+
Sbjct: 78 RCTAGTLHNLS 88
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein
phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 588
Score = 27.1 bits (58), Expect = 0.84
Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 8 LTSTKPYLRKKAVLMMYKVFLKFPDALRPAF--PRLKEKLEDPDSGVQSAAVNVVCELA 64
+R + K+ ++ + P L++ +D D V+ A + L+
Sbjct: 528 AGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId:
9606]}
Length = 458
Score = 26.7 bits (57), Expect = 1.2
Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 13/112 (11%)
Query: 19 AVLMMYKVFLKFPDALRPA-FPRLKEKLEDPDSGVQSAAVNVVCELARKNPKNYLS---- 73
A + + + D + P P +KE +++PD + AAV + + L
Sbjct: 347 AGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVI 406
Query: 74 -LAPVFFKLMTTSSNN------WMLIKIIKLFGALTPLEPRLGKKLIEPLTN 118
P +LM S W + +I +L + L L++ L
Sbjct: 407 QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL-APLLQCLIE 457
>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068
{Enterococcus faecalis [TaxId: 1351]}
Length = 213
Score = 26.1 bits (57), Expect = 1.4
Identities = 7/63 (11%), Positives = 22/63 (34%), Gaps = 2/63 (3%)
Query: 7 YLTSTKPYLRKKAVLMMYKVFLKFPDALRPAFPRLKEKLEDPDSGVQSAAVNVVCELARK 66
+ + + R+ A+ + + K + + +Q A + + ++
Sbjct: 127 FYGAENFWNRRVALNLQLMLKEK--TNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT 184
Query: 67 NPK 69
NP+
Sbjct: 185 NPQ 187
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter
vinelandii [TaxId: 354]}
Length = 233
Score = 25.5 bits (55), Expect = 2.7
Identities = 5/25 (20%), Positives = 7/25 (28%)
Query: 33 ALRPAFPRLKEKLEDPDSGVQSAAV 57
L + D D V+ A
Sbjct: 63 VRYSPVEALTPLIRDSDEVVRRAVA 87
Score = 24.7 bits (53), Expect = 4.7
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 33 ALRPAFPRLKEKLEDPDSGVQSAAV 57
A+ A +L++PD V+ A
Sbjct: 206 AVEHASLEALRELDEPDPEVRLAIA 230
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.139 0.422
Gapped
Lambda K H
0.267 0.0631 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 517,270
Number of extensions: 21967
Number of successful extensions: 70
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 15
Length of query: 136
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 60
Effective length of database: 1,364,116
Effective search space: 81846960
Effective search space used: 81846960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (22.5 bits)