BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11030
(153 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z83|A Chain A, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|B Chain B, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|C Chain C, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|2C95|A Chain A, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
pdb|2C95|B Chain B, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
Length = 196
Score = 127 bits (318), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 60/92 (65%), Positives = 76/92 (82%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMEL 60
GPGSGKGTQ EKIVQKYGYTH+STGDLLR EV+SGSARG LS++M+ G LV + V+++
Sbjct: 17 GPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDM 76
Query: 61 LGEKVLKELPNSKGYLIDGYPREKAQGEQFER 92
L + ++ ++ SKG+LIDGYPRE QGE+FER
Sbjct: 77 LRDAMVAKVNTSKGFLIDGYPREVQQGEEFER 108
>pdb|3ADK|A Chain A, Refined Structure Of Porcine Cytosolic Adenylate Kinase At
2.1 Angstroms Resolution
Length = 195
Score = 126 bits (316), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 60/93 (64%), Positives = 77/93 (82%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMEL 60
GPGSGKGTQ EKIVQKYGYTH+STGDLLR EV+SGSARG LS++M+ G LV + V+++
Sbjct: 17 GPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVLDM 76
Query: 61 LGEKVLKELPNSKGYLIDGYPREKAQGEQFERE 93
L + ++ ++ SKG+LIDGYPRE QGE+FER+
Sbjct: 77 LRDAMVAKVDTSKGFLIDGYPREVKQGEEFERK 109
>pdb|2BWJ|A Chain A, Structure Of Adenylate Kinase 5
pdb|2BWJ|B Chain B, Structure Of Adenylate Kinase 5
pdb|2BWJ|C Chain C, Structure Of Adenylate Kinase 5
pdb|2BWJ|D Chain D, Structure Of Adenylate Kinase 5
pdb|2BWJ|E Chain E, Structure Of Adenylate Kinase 5
pdb|2BWJ|F Chain F, Structure Of Adenylate Kinase 5
Length = 199
Score = 110 bits (275), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 52/92 (56%), Positives = 71/92 (77%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMEL 60
GPGSGKGTQ EK+V+KYG+TH+STG+LLREE+ S S R + +M+ G LV + +V+EL
Sbjct: 20 GPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLEL 79
Query: 61 LGEKVLKELPNSKGYLIDGYPREKAQGEQFER 92
L E ++ L +++G+LIDGYPRE QGE+F R
Sbjct: 80 LKEAMVASLGDTRGFLIDGYPREVKQGEEFGR 111
>pdb|3UMF|A Chain A, Schistosoma Mansoni Adenylate Kinase
Length = 217
Score = 107 bits (267), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 80/121 (66%), Gaps = 10/121 (8%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMEL 60
GPGSGKGTQ EK+VQK+ + H+S+GDLLR EV SGS +G +L +M+ G LV +VV+ L
Sbjct: 37 GPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLAL 96
Query: 61 LGEKVLKELPNSKGYLIDGYPREKAQGEQFERE----------DVVMELLGEKVLKELPN 110
L E ++K + + +LIDGYPRE QG +FE+E DV E++ +++LK
Sbjct: 97 LKEAMIKLVDKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAET 156
Query: 111 S 111
S
Sbjct: 157 S 157
>pdb|1AK2|A Chain A, Adenylate Kinase Isoenzyme-2
pdb|2AK2|A Chain A, Adenylate Kinase Isoenzyme-2
Length = 233
Score = 83.2 bits (204), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 63/103 (61%), Gaps = 4/103 (3%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PG+GKGTQA K+ + + H++TGD+LR V SGS G L M G LVS ++V+EL+
Sbjct: 25 PGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELI 84
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQGEQFEREDVVMELLGEKV 104
EK L+ P G+L+DG+PR Q E D +ME EK+
Sbjct: 85 -EKNLETPPCKNGFLLDGFPRTVRQAEML---DDLMEKRKEKL 123
>pdb|1S3G|A Chain A, Crystal Structure Of Adenylate Kinase From Bacillus
Globisporus
Length = 217
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 26/162 (16%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PG+GKGTQA++IV+KYG HISTGD+ R + G+ G M G LV +V + ++
Sbjct: 9 PGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEVTIGIV 68
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQGE-------------------QFEREDVVMELLGE 102
E++ K G+L+DG+PR Q E Q E+E+++ L G
Sbjct: 69 RERLSKS-DCDNGFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEELIARLTGR 127
Query: 103 KVLKELPNSKGYLIDGYPR-----EKAQGEQFEREINSPTGI 139
++ K S +L+ P+ +K GE ++R ++P +
Sbjct: 128 RICKVCGTSY-HLLFNPPQVEGKCDKDGGELYQRADDNPDTV 168
>pdb|1ZIN|A Chain A, Adenylate Kinase With Bound Ap5a
pdb|1ZIO|A Chain A, Phosphotransferase
pdb|1ZIP|A Chain A, Bacillus Stearothermophilus Adenylate Kinase
Length = 217
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 77/153 (50%), Gaps = 24/153 (15%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PG+GKGTQAEKIV YG HISTGD+ R + G+ G + M G LV +V + ++
Sbjct: 9 PGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIV 68
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQGEQFE------------------REDVVMELLGEK 103
E++ K+ G+L+DG+PR AQ E E R+DV+ME L +
Sbjct: 69 RERLSKD-DCQNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLMERLTGR 127
Query: 104 VLKELPNSKGYLIDGYPR-----EKAQGEQFER 131
+ + +LI P +K GE ++R
Sbjct: 128 RICRNCGATYHLIFHPPAKPGVCDKCGGELYQR 160
>pdb|1UKY|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
pdb|1UKZ|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
Length = 203
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 60/97 (61%), Gaps = 2/97 (2%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLR-EEVNSGSARGADLSKVMKDGGLVSTDVVME 59
GPG+GKGTQ EK+V+ Y + H+S GDLLR E+ +GS G + +K+G +V ++ +
Sbjct: 23 GPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLA 82
Query: 60 LLGEKVLKEL-PNSKGYLIDGYPREKAQGEQFEREDV 95
LL + + N +LIDG+PR+ Q FER+ V
Sbjct: 83 LLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIV 119
>pdb|1ZAK|A Chain A, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
pdb|1ZAK|B Chain B, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
Length = 222
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 63/115 (54%), Gaps = 10/115 (8%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMEL 60
P SGKGTQ E I KY HIS GDLLR E+ +GS G + M+ G LV ++V+ +
Sbjct: 13 APASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNM 72
Query: 61 LGEKVLKELPNSKGYLIDGYPREKAQG----------EQFEREDVVMELLGEKVL 105
+ E++ + G+L+DGYPR +Q + F DV ELL E+V+
Sbjct: 73 VKERLRQPDAQENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVV 127
>pdb|1AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
pdb|2AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
Length = 220
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 59/91 (64%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PG+GKGTQA + +++ H++TGD+LR ++ G+ G + K+M GGLVS D+++ ++
Sbjct: 13 PGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMI 72
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQGEQFER 92
+++ G+++DG+PR Q E+ ++
Sbjct: 73 KDELTNNPACKNGFILDGFPRTIPQAEKLDQ 103
>pdb|3AKY|A Chain A, Stability, Activity And Structure Of Adenylate Kinase
Mutants
Length = 220
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 59/91 (64%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PG+GKGTQA + +++ H++TGD+LR ++ G+ G + K+M GGLVS D+++ ++
Sbjct: 13 PGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMI 72
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQGEQFER 92
+++ G+++DG+PR Q E+ ++
Sbjct: 73 KDELTNNPACKNGFILDGFPRTIPQAEKLDQ 103
>pdb|3FB4|A Chain A, Crystal Structure Of Adenylate Kinase From Marinibacillus
Marinus
Length = 216
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 64/103 (62%), Gaps = 4/103 (3%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PG+GKGTQAE+I++KY HISTGD+ R + +G+ G M G LV +V + ++
Sbjct: 9 PGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIV 68
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQGEQFEREDVVMELLGEKV 104
E++ K+ KG+L+DG+PR AQ + D ++ LG+K+
Sbjct: 69 HERLSKD-DCQKGFLLDGFPRTVAQADAL---DSLLTDLGKKL 107
>pdb|1AKE|A Chain A, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic Transition
State
pdb|1AKE|B Chain B, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic Transition
State
pdb|1ANK|A Chain A, The Closed Conformation Of A Highly Flexible Protein: The
Structure Of E. Cloi Adenylate Kinase With Bound Amp And
Amppnp
pdb|1ANK|B Chain B, The Closed Conformation Of A Highly Flexible Protein: The
Structure Of E. Cloi Adenylate Kinase With Bound Amp And
Amppnp
pdb|4AKE|A Chain A, Adenylate Kinase
pdb|4AKE|B Chain B, Adenylate Kinase
pdb|2ECK|A Chain A, Structure Of Phosphotransferase
pdb|2ECK|B Chain B, Structure Of Phosphotransferase
pdb|3HPQ|A Chain A, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
pdb|3HPQ|B Chain B, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
Length = 214
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 76/142 (53%), Gaps = 17/142 (11%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMEL 60
PG+GKGTQA+ I++KYG ISTGD+LR V SGS G +M G LV+ ++V+ L
Sbjct: 8 APGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIAL 67
Query: 61 LGEKVLKELPNSKGYLIDGYPREKAQGEQFEREDVVMELLGEKVLKELPNSKGYLID-GY 119
+ E++ +E G+L+DG+PR Q + +KE + Y+++
Sbjct: 68 VKERIAQE-DCRNGFLLDGFPRTIPQAD---------------AMKEAGINVDYVLEFDV 111
Query: 120 PREKAQGEQFEREINSPTGIVY 141
P E R +++P+G VY
Sbjct: 112 PDELIVDRIVGRRVHAPSGRVY 133
>pdb|2C9Y|A Chain A, Structure Of Human Adenylate Kinase 2
Length = 242
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 77/145 (53%), Gaps = 19/145 (13%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PG+GKGTQA ++ + + H++TGD+LR V SGS G L M G LVS ++V+EL+
Sbjct: 25 PGAGKGTQAPRLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVVELI 84
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQGEQFEREDVVMELLGEKVLK----ELPNS------ 111
EK L+ G+L+DG+PR Q E D +ME EK+ +P+S
Sbjct: 85 -EKNLETPLCKNGFLLDGFPRTVRQAEML---DDLMEKRKEKLDSVIEFSIPDSLLIRRI 140
Query: 112 KGYLIDGYPREKAQGEQFEREINSP 136
G LI +P+ G + E N P
Sbjct: 141 TGRLI--HPK---SGRSYHEEFNPP 160
>pdb|3HPR|A Chain A, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
In Complex With Ap5a
pdb|3HPR|B Chain B, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
In Complex With Ap5a
Length = 214
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 76/142 (53%), Gaps = 17/142 (11%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMEL 60
PG+GKGTQA+ I++KYG ISTGD+LR V SGS G +M G LV+ ++V+ L
Sbjct: 8 APGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIAL 67
Query: 61 LGEKVLKELPNSKGYLIDGYPREKAQGEQFEREDVVMELLGEKVLKELPNSKGYLID-GY 119
+ E++ +E G+L+DG+PR Q + +KE + Y+++
Sbjct: 68 VKERIAQE-DCRNGFLLDGFPRTIPQAD---------------AMKEAGINVDYVLEFDV 111
Query: 120 PREKAQGEQFEREINSPTGIVY 141
P E R +++P+G VY
Sbjct: 112 PDELIVDRIVGRRVHAPSGRVY 133
>pdb|1QF9|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog In UmpCMP
Kinase
pdb|5UKD|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog
pdb|1UKE|A Chain A, UmpCMP KINASE FROM SLIME MOLD
pdb|2UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP
pdb|3UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP,
AND Alf3
pdb|4UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, UDP,
Beryllium Fluoride
Length = 194
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 55/82 (67%), Gaps = 2/82 (2%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMEL 60
GPGSGKGTQ IV+ +G+ H+S GDLLR+E SGS G ++ ++K+G +V + V ++L
Sbjct: 14 GPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKL 73
Query: 61 LGEKVLKELPNSKGYLIDGYPR 82
L + + K +L+DG+PR
Sbjct: 74 LKNAI--DANQGKNFLVDGFPR 93
>pdb|3TLX|A Chain A, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|B Chain B, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|C Chain C, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|D Chain D, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
Length = 243
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 70/144 (48%), Gaps = 11/144 (7%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMEL 60
PGSGKGTQ+ + + + Y H+STGDLLRE + G + ++ +G LV +V+ L
Sbjct: 37 APGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSL 96
Query: 61 LGEKVLKELPNSKGYLIDGYPREKAQGEQFEREDVVMELLGEKVLKELPNSKGYLIDGYP 120
+ EK LK KG+++DGYPR Q E L + + K G P
Sbjct: 97 VDEK-LKTPQCKKGFILDGYPRNVKQAED----------LNKLLQKNQTKLDGVFYFNVP 145
Query: 121 REKAQGEQFEREINSPTGIVYFEV 144
E R I+ P+G +Y ++
Sbjct: 146 DEVLVNRISGRLIHKPSGRIYHKI 169
>pdb|1E4V|A Chain A, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4V|B Chain B, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 75/142 (52%), Gaps = 17/142 (11%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMEL 60
P +GKGTQA+ I++KYG ISTGD+LR V SGS G +M G LV+ ++V+ L
Sbjct: 8 APVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIAL 67
Query: 61 LGEKVLKELPNSKGYLIDGYPREKAQGEQFEREDVVMELLGEKVLKELPNSKGYLID-GY 119
+ E++ +E G+L+DG+PR Q + +KE + Y+++
Sbjct: 68 VKERIAQE-DCRNGFLLDGFPRTIPQAD---------------AMKEAGINVDYVLEFDV 111
Query: 120 PREKAQGEQFEREINSPTGIVY 141
P E R +++P+G VY
Sbjct: 112 PDELIVDRIVGRRVHAPSGRVY 133
>pdb|1DVR|A Chain A, Structure Of A Mutant Adenylate Kinase Ligated With An
Atp- Analogue Showing Domain Closure Over Atp
pdb|1DVR|B Chain B, Structure Of A Mutant Adenylate Kinase Ligated With An
Atp- Analogue Showing Domain Closure Over Atp
Length = 220
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 58/91 (63%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PG+GKGTQA + +++ H++TGD+LR ++ G+ G + K+M GGLVS D+++ ++
Sbjct: 13 PGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMI 72
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQGEQFER 92
+++ G+++ G+PR Q E+ ++
Sbjct: 73 KDELTNNPACKNGFILVGFPRTIPQAEKLDQ 103
>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus
Thermophilus Hb8
Length = 186
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 58/91 (63%), Gaps = 6/91 (6%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PG+GKGTQA ++ Q+ G+ +STGD+LR+ V G+ G + +M+ G LV D+++EL+
Sbjct: 13 PGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELI 72
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQGEQFER 92
E++ ++ + DG+PR AQ E +R
Sbjct: 73 REEL------AERVIFDGFPRTLAQAEALDR 97
>pdb|1E4Y|A Chain A, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4Y|B Chain B, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 74/139 (53%), Gaps = 17/139 (12%)
Query: 4 SGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGE 63
+GKGTQA+ I++KYG ISTGD+LR V SGS G +M G LV+ ++V+ L+ E
Sbjct: 11 AGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKE 70
Query: 64 KVLKELPNSKGYLIDGYPREKAQGEQFEREDVVMELLGEKVLKELPNSKGYLID-GYPRE 122
++ +E G+L+DG+PR Q + +KE + Y+++ P E
Sbjct: 71 RIAQE-DCRNGFLLDGFPRTIPQAD---------------AMKEAGINVDYVLEFDVPDE 114
Query: 123 KAQGEQFEREINSPTGIVY 141
R +++P+G VY
Sbjct: 115 LIVDRIVGRRVHAPSGRVY 133
>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex
Aeolicus In Complex With Ap5a
pdb|2RH5|A Chain A, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|C Chain C, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|B Chain B, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|3SR0|A Chain A, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
pdb|3SR0|B Chain B, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
Length = 206
Score = 72.8 bits (177), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 71/140 (50%), Gaps = 14/140 (10%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PG+GKGTQA+++ ++ G+ HISTGD+LRE V G+ G + M+ G LV D+++ L+
Sbjct: 9 PGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALI 68
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQGEQFEREDVVMELLGEKVLKELPNSKGYLIDGYPR 121
E P + DG+PR Q E + E+L +K LK L+ P
Sbjct: 69 EEV----FPKHGNVIFDGFPRTVKQAEALD------EMLEKKGLK----VDHVLLFEVPD 114
Query: 122 EKAQGEQFEREINSPTGIVY 141
E R IN TG VY
Sbjct: 115 EVVIERLSGRRINPETGEVY 134
>pdb|1TEV|A Chain A, Crystal Structure Of The Human UmpCMP KINASE IN OPEN
Conformation
Length = 196
Score = 72.8 bits (177), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 4/88 (4%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEV-NSGSARGADLSKVMKDGGLVSTDVVME 59
GPG+GKGTQ +IV+KYGYTH+S G+LLR+E N S G + K +K+G +V ++ +
Sbjct: 11 GPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITIS 70
Query: 60 LLG---EKVLKELPNSKGYLIDGYPREK 84
LL ++ + +LIDG+PR +
Sbjct: 71 LLKREMDQTMAANAQKNKFLIDGFPRNQ 98
>pdb|3GMT|A Chain A, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
pdb|3GMT|B Chain B, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
Length = 230
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMEL 60
PG+GKGTQA I +K+G ISTGD LR V +G+ G + +G LV +++ L
Sbjct: 16 APGAGKGTQANFIKEKFGIPQISTGDXLRAAVKAGTPLGVEAKTYXDEGKLVPDSLIIGL 75
Query: 61 LGEKVLKELPNSKGYLIDGYPREKAQGEQFEREDVVMELLGE 102
+ E+ LKE + GYL DG+PR AQ + + V ++ + E
Sbjct: 76 VKER-LKEADCANGYLFDGFPRTIAQADAXKEAGVAIDYVLE 116
>pdb|3BE4|A Chain A, Crystal Structure Of Cryptosporidium Parvum Adenylate
Kinase Cgd5_3360
Length = 217
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 56/89 (62%), Gaps = 3/89 (3%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMEL 60
PGSGKGTQ E I ++YG H+STGD+LRE + +G+ G + +++ G V ++V+ L
Sbjct: 13 APGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGL 72
Query: 61 LGEKV-LKELPNSKGYLIDGYPREKAQGE 88
+ EK L N G+++DG+PR Q E
Sbjct: 73 VKEKFDLGVCVN--GFVLDGFPRTIPQAE 99
>pdb|3DKV|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse1
Length = 217
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PG+GKGTQAE+IV+KYG HISTGD+ R + + G + + G LV +V + ++
Sbjct: 9 PGAGKGTQAERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIV 68
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQ 86
E++ K +G+L+DG+PR AQ
Sbjct: 69 RERLSKS-DCERGFLLDGFPRTVAQ 92
>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate
Kinase
Length = 181
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 67/121 (55%), Gaps = 10/121 (8%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PG+GKGTQA K+ +K G ISTG+L R + G+ G + + + G LV +D+ EL+
Sbjct: 9 PGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELV 68
Query: 62 GEKVLKELPNSKGYLIDGYPRE----KAQGEQFERE----DVVMEL-LGEKVLKELPNSK 112
++ L + G+++DGYPR KA E ER D V+E + E+VL E +
Sbjct: 69 DDR-LNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGR 127
Query: 113 G 113
G
Sbjct: 128 G 128
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate
Kinase Complexed With Two Molecules Of Adp And Mg
Length = 201
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 67/121 (55%), Gaps = 10/121 (8%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PG+GKGTQA K+ +K G ISTG+L R + G+ G + + + G LV +D+ EL+
Sbjct: 29 PGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELV 88
Query: 62 GEKVLKELPNSKGYLIDGYPRE----KAQGEQFERE----DVVMEL-LGEKVLKELPNSK 112
++ L + G+++DGYPR KA E ER D V+E + E+VL E +
Sbjct: 89 DDR-LNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGR 147
Query: 113 G 113
G
Sbjct: 148 G 148
>pdb|3DL0|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse3
pdb|3DL0|B Chain B, Crystal Structure Of Adenylate Kinase Variant Aklse3
Length = 216
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PG+GKGTQ E+IV+KYG HISTGD+ R + + G + + G LV +V + ++
Sbjct: 9 PGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIV 68
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQ 86
E++ K+ +G+L+DG+PR AQ
Sbjct: 69 KERLGKD-DCERGFLLDGFPRTVAQ 92
>pdb|2QAJ|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
pdb|2QAJ|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
Length = 217
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PG+GKGTQ E+IV+ YG HISTGD+ R + + G + + G LV +V + ++
Sbjct: 9 PGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIV 68
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQ 86
E++ K+ +G+L+DG+PR AQ
Sbjct: 69 KERLGKD-DCERGFLLDGFPRTVAQ 92
>pdb|2P3S|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (G214rQ199R)
Length = 217
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PG+GKGTQ E+IV+ YG HISTGD+ R + + G + + G LV +V + ++
Sbjct: 9 PGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIV 68
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQ 86
E++ K+ +G+L+DG+PR AQ
Sbjct: 69 KERLGKD-DCERGFLLDGFPRTVAQ 92
>pdb|2EU8|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
pdb|2EU8|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
Length = 216
Score = 66.6 bits (161), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PG+GKGTQ E+IV+ YG HISTGD+ R + + G + + G LV +V + ++
Sbjct: 9 PGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIV 68
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQ 86
E++ K+ +G+L+DG+PR AQ
Sbjct: 69 KERLGKD-DCERGFLLDGFPRTVAQ 92
>pdb|2OO7|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
pdb|2OO7|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
Length = 217
Score = 66.6 bits (161), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PG+GKGTQ E+IV+ YG HISTGD+ R + + G + + G LV +V + ++
Sbjct: 9 PGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIV 68
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQ 86
E++ K+ +G+L+DG+PR AQ
Sbjct: 69 KERLGKD-DCERGFLLDGFPRTVAQ 92
>pdb|2ORI|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
pdb|2ORI|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
Length = 216
Score = 66.6 bits (161), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PG+GKGTQ E+IV+ YG HISTGD+ R + + G + + G LV +V + ++
Sbjct: 9 PGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIV 68
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQ 86
E++ K+ +G+L+DG+PR AQ
Sbjct: 69 KERLGKD-DCERGFLLDGFPRTVAQ 92
>pdb|1P3J|A Chain A, Adenylate Kinase From Bacillus Subtilis
Length = 217
Score = 66.6 bits (161), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PG+GKGTQ E+IV+ YG HISTGD+ R + + G + + G LV +V + ++
Sbjct: 9 PGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIV 68
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQ 86
E++ K+ +G+L+DG+PR AQ
Sbjct: 69 KERLGKD-DCERGFLLDGFPRTVAQ 92
>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2AR7|B Chain B, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2BBW|A Chain A, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
pdb|2BBW|B Chain B, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
Length = 246
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 68/145 (46%), Gaps = 27/145 (18%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PGSGKGT ++I Q +G H+S+G LRE + + + G + ++ LV V+ L+
Sbjct: 36 PGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLM 95
Query: 62 GEKVLKELPNSKG--YLIDGYPREKAQGEQFER---EDVVMELLGEKVLKELPNSKGYLI 116
+ EL N +G +L+DG+PR Q E ++ D+V+ L
Sbjct: 96 ----MSELENRRGQHWLLDGFPRTLGQAEALDKICEVDLVISL----------------- 134
Query: 117 DGYPREKAQGEQFEREINSPTGIVY 141
P E + R I+ P+G VY
Sbjct: 135 -NIPFETLKDRLSRRWIHPPSGRVY 158
>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p)
pdb|3NDP|B Chain B, Crystal Structure Of Human Ak4(L171p)
Length = 231
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 68/145 (46%), Gaps = 27/145 (18%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PGSGKGT ++I Q +G H+S+G LRE + + + G + ++ LV V+ L+
Sbjct: 14 PGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLM 73
Query: 62 GEKVLKELPNSKG--YLIDGYPREKAQGEQFER---EDVVMELLGEKVLKELPNSKGYLI 116
+ EL N +G +L+DG+PR Q E ++ D+V+ L
Sbjct: 74 ----MSELENRRGQHWLLDGFPRTLGQAEALDKICEVDLVISL----------------- 112
Query: 117 DGYPREKAQGEQFEREINSPTGIVY 141
P E + R I+ P+G VY
Sbjct: 113 -NIPFETLKDRLSRRWIHPPSGRVY 136
>pdb|2AK3|A Chain A, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
pdb|2AK3|B Chain B, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
Length = 226
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 9/104 (8%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMEL 60
PGSGKGT + +I + + H+S+GDLLR+ + G+ G + G L+ DV+ L
Sbjct: 14 APGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMTRL 73
Query: 61 LGEKVLKELPNSKGY--LIDGYPREKAQGEQFERE---DVVMEL 99
VL EL N Y L+DG+PR Q E +R D V+ L
Sbjct: 74 ----VLHELKNLTQYNWLLDGFPRTLPQAEALDRAYQIDTVINL 113
>pdb|2OSB|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
pdb|2OSB|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
Length = 216
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PG+GKGT E+IV+ YG HISTGD+ R + + G + + G LV +V + ++
Sbjct: 9 PGAGKGTLGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIV 68
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQ 86
E++ K+ +G+L+DG+PR AQ
Sbjct: 69 KERLGKD-DCERGFLLDGFPRTVAQ 92
>pdb|1ZD8|A Chain A, Structure Of Human Adenylate Kinase 3 Like 1
Length = 227
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 69/143 (48%), Gaps = 13/143 (9%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMEL 60
PGSGKGT + +I + H+S+GDLLR+ + G+ G L+K D G + D VM
Sbjct: 15 APGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGV-LAKAFIDQGKLIPDDVMTR 73
Query: 61 LGEKVLKELPNSKGYLIDGYPREKAQGEQFERE---DVVMEL-LGEKVLKELPNSKGYLI 116
L LK L +L+DG+PR Q E +R D V+ L + +V+K+ ++
Sbjct: 74 LALHELKNL-TQYSWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTARWI-- 130
Query: 117 DGYPREKAQGEQFEREINSPTGI 139
A G + E N P +
Sbjct: 131 -----HPASGRVYNIEFNPPKTV 148
>pdb|3L0P|A Chain A, Crystal Structures Of Iron Containing Adenylate Kinase
From Desulfovibrio Gigas
pdb|3L0S|A Chain A, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
pdb|3L0S|C Chain C, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
Length = 223
Score = 59.3 bits (142), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 17/141 (12%)
Query: 1 GP-GSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVME 59
GP GSGKGTQ + KY HI +G + RE + G+ G + + G LV D+ +
Sbjct: 7 GPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIP 66
Query: 60 LLGEKVLKELPNSKGYLIDGYPREKAQGEQFEREDVVMELLGEKVLKELPNSKGYLID-G 118
++ E + E G+L+DG+PR Q ++ + E L EK +K ++I+
Sbjct: 67 MVLETL--ESKGKDGWLLDGFPRNTVQAQK------LFEALQEKGMK-----INFVIEIL 113
Query: 119 YPREKAQGEQFEREI--NSPT 137
PRE A+ R I N+P
Sbjct: 114 LPREVAKNRIMGRRICKNNPN 134
>pdb|2XB4|A Chain A, Crystal Structures Of Zinc Containing Adenylate Kinase
From Desulfovibrio Gigas
Length = 223
Score = 59.3 bits (142), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 17/141 (12%)
Query: 1 GP-GSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVME 59
GP GSGKGTQ + KY HI +G + RE + G+ G + + G LV D+ +
Sbjct: 7 GPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIP 66
Query: 60 LLGEKVLKELPNSKGYLIDGYPREKAQGEQFEREDVVMELLGEKVLKELPNSKGYLID-G 118
++ E + E G+L+DG+PR Q ++ + E L EK +K ++I+
Sbjct: 67 MVLETL--ESKGKDGWLLDGFPRNTVQAQK------LFEALQEKGMK-----INFVIEIL 113
Query: 119 YPREKAQGEQFEREI--NSPT 137
PRE A+ R I N+P
Sbjct: 114 LPREVAKNRIMGRRICKNNPN 134
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 30.0 bits (66), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREE 31
PG GK T +++ K G +I+ GDL REE
Sbjct: 13 PGVGKTTLGKELASKSGLKYINVGDLAREE 42
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0
Angstroms Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 30.0 bits (66), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREE 31
PG GK T +++ K G +I+ GDL REE
Sbjct: 20 PGVGKTTLGKELASKSGLKYINVGDLAREE 49
>pdb|1Q3T|A Chain A, Solution Structure And Function Of An Essential Cmp
Kinase Of Streptococcus Pneumoniae
Length = 236
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 1 GPGS-GKGTQAEKIVQKYGYTHISTGDLLR 29
GP S GK T A+ I + +G+T++ TG + R
Sbjct: 23 GPASSGKSTVAKIIAKDFGFTYLDTGAMYR 52
>pdb|3IXV|A Chain A, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|C Chain C, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|D Chain D, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|E Chain E, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|F Chain F, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|G Chain G, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|H Chain H, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|I Chain I, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|J Chain J, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|K Chain K, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|L Chain L, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|M Chain M, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXW|A Chain A, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|C Chain C, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|D Chain D, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|E Chain E, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|F Chain F, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|G Chain G, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|H Chain H, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|I Chain I, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|J Chain J, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|K Chain K, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|L Chain L, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|M Chain M, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
Length = 626
Score = 28.5 bits (62), Expect = 1.5, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 81 PREKAQGEQFE--------REDVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQFERE 132
PR +G +FE ED V L V + + G D YP +KA G F+R+
Sbjct: 542 PRGSHKGMEFELFVMLTDHDEDTVAGLSENAVCSDAVSYCGARDDRYPDKKAMGFPFDRK 601
Query: 133 INSPTG 138
I + T
Sbjct: 602 IEARTA 607
>pdb|3KPT|A Chain A, Crystal Structure Of Bcpa, The Major Pilin Subunit Of
Bacillus Cereus
pdb|3KPT|B Chain B, Crystal Structure Of Bcpa, The Major Pilin Subunit Of
Bacillus Cereus
Length = 355
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 10/68 (14%)
Query: 26 DLLREEVNSGSARGADLSKVMKDGGLVSTDVVMEL----------LGEKVLKELPNSKGY 75
DL++ VN + GA S KDG V ++ + GE +E KGY
Sbjct: 11 DLIKTGVNEKAXAGAVFSLFKKDGTEVKKELATDANGHIRVQGLEYGEYYFQETKAPKGY 70
Query: 76 LIDGYPRE 83
+ID RE
Sbjct: 71 VIDPTKRE 78
>pdb|3RKP|A Chain A, Crystal Structure Of Bcpa(D312a), The Major Pilin
Subunit Of Bacillus Cereus
pdb|3RKP|B Chain B, Crystal Structure Of Bcpa(D312a), The Major Pilin
Subunit Of Bacillus Cereus
Length = 355
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 10/68 (14%)
Query: 26 DLLREEVNSGSARGADLSKVMKDGGLVSTDVVMEL----------LGEKVLKELPNSKGY 75
DL++ VN + GA S KDG V ++ + GE +E KGY
Sbjct: 11 DLIKTGVNEKAMAGAVFSLFKKDGTEVKKELATDANGHIRVQGLEYGEYYFQETKAPKGY 70
Query: 76 LIDGYPRE 83
+ID RE
Sbjct: 71 VIDPTKRE 78
>pdb|2D4W|A Chain A, Crystal Structure Of Glycerol Kinase From Cellulomonas Sp.
Nt3060
pdb|2D4W|B Chain B, Crystal Structure Of Glycerol Kinase From Cellulomonas Sp.
Nt3060
Length = 504
Score = 26.2 bits (56), Expect = 6.9, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 29 REEVNSGSA-RGADLSKVMKDGGLVSTDVVMELLGEKV 65
RE V++ +A G DL+++ DGG+V+ +++M+ +++
Sbjct: 390 REVVDAMNADSGVDLTELRVDGGMVANELLMQFQADQL 427
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.135 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,194,462
Number of Sequences: 62578
Number of extensions: 224292
Number of successful extensions: 593
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 466
Number of HSP's gapped (non-prelim): 91
length of query: 153
length of database: 14,973,337
effective HSP length: 90
effective length of query: 63
effective length of database: 9,341,317
effective search space: 588502971
effective search space used: 588502971
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 47 (22.7 bits)