Query psy11030
Match_columns 153
No_of_seqs 135 out of 1231
Neff 10.3
Searched_HMMs 46136
Date Fri Aug 16 16:20:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11030.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11030hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3079|consensus 99.9 7.7E-27 1.7E-31 152.5 11.9 112 1-152 16-130 (195)
2 PLN02674 adenylate kinase 99.9 1.4E-26 3.1E-31 160.8 12.3 113 1-153 39-156 (244)
3 PF00406 ADK: Adenylate kinase 99.9 2.1E-26 4.5E-31 150.9 11.3 89 1-90 4-92 (151)
4 PLN02459 probable adenylate ki 99.9 2.5E-26 5.3E-31 160.4 11.9 114 1-153 37-151 (261)
5 PRK14529 adenylate kinase; Pro 99.9 1.8E-25 4E-30 153.6 10.0 108 1-110 8-129 (223)
6 PRK13808 adenylate kinase; Pro 99.9 1.3E-24 2.8E-29 156.5 11.5 112 1-152 8-124 (333)
7 TIGR01351 adk adenylate kinase 99.9 3.6E-24 7.7E-29 147.3 12.0 113 1-152 7-121 (210)
8 PTZ00088 adenylate kinase 1; P 99.9 8.2E-24 1.8E-28 146.5 11.7 109 1-109 14-132 (229)
9 PRK14526 adenylate kinase; Pro 99.9 1.2E-23 2.6E-28 144.2 11.1 109 1-110 8-125 (211)
10 PRK14532 adenylate kinase; Pro 99.9 1.7E-23 3.7E-28 141.7 11.2 108 1-109 8-129 (188)
11 PRK14531 adenylate kinase; Pro 99.9 2.4E-23 5.2E-28 140.4 11.1 106 1-108 10-129 (183)
12 PRK14528 adenylate kinase; Pro 99.9 4.4E-23 9.5E-28 139.3 11.9 113 1-153 9-126 (186)
13 TIGR01359 UMP_CMP_kin_fam UMP- 99.9 6.3E-23 1.4E-27 138.3 11.2 108 1-110 7-127 (183)
14 COG0563 Adk Adenylate kinase a 99.9 2.2E-22 4.8E-27 134.4 11.2 107 1-108 8-128 (178)
15 PRK00279 adk adenylate kinase; 99.9 2.1E-22 4.5E-27 139.0 11.0 108 1-109 8-129 (215)
16 PLN02842 nucleotide kinase 99.9 5.3E-22 1.1E-26 149.3 11.5 113 1-152 5-118 (505)
17 PLN02200 adenylate kinase fami 99.9 1.1E-21 2.4E-26 136.6 12.2 107 1-109 51-168 (234)
18 PRK02496 adk adenylate kinase; 99.9 1.4E-21 3E-26 131.9 11.8 107 1-108 9-129 (184)
19 cd01428 ADK Adenylate kinase ( 99.9 3.9E-21 8.4E-26 130.6 11.6 109 1-110 7-128 (194)
20 PRK14527 adenylate kinase; Pro 99.9 7.7E-21 1.7E-25 129.0 11.4 108 1-110 14-135 (191)
21 TIGR01360 aden_kin_iso1 adenyl 99.8 3.3E-20 7.2E-25 125.4 12.5 107 1-107 11-127 (188)
22 KOG3078|consensus 99.8 1.3E-20 2.9E-25 128.8 8.6 112 1-152 23-135 (235)
23 PRK14530 adenylate kinase; Pro 99.8 5.1E-20 1.1E-24 127.1 11.1 105 1-110 11-129 (215)
24 PRK01184 hypothetical protein; 99.7 7.5E-16 1.6E-20 103.9 10.7 138 1-150 9-169 (184)
25 PRK14730 coaE dephospho-CoA ki 99.6 1.5E-15 3.2E-20 103.3 7.7 141 1-150 9-185 (195)
26 PRK08356 hypothetical protein; 99.6 9.6E-16 2.1E-20 104.4 5.3 139 1-150 13-183 (195)
27 cd02022 DPCK Dephospho-coenzym 99.5 2.9E-14 6.3E-19 95.8 8.3 137 1-147 7-178 (179)
28 PRK00081 coaE dephospho-CoA ki 99.5 2.8E-14 6E-19 97.1 8.1 140 1-150 10-184 (194)
29 PLN02422 dephospho-CoA kinase 99.5 6.3E-14 1.4E-18 97.1 8.9 140 1-150 9-185 (232)
30 PF01121 CoaE: Dephospho-CoA k 99.5 1.4E-14 3E-19 97.1 4.8 137 1-147 8-179 (180)
31 COG1102 Cmk Cytidylate kinase 99.5 5.6E-14 1.2E-18 90.7 7.3 102 1-108 8-112 (179)
32 PRK14734 coaE dephospho-CoA ki 99.5 1.2E-13 2.7E-18 94.2 9.4 140 1-150 9-185 (200)
33 TIGR00152 dephospho-CoA kinase 99.5 6.8E-14 1.5E-18 94.7 7.3 140 1-150 7-183 (188)
34 PRK14733 coaE dephospho-CoA ki 99.5 1.1E-13 2.3E-18 94.4 7.8 140 1-150 14-189 (204)
35 KOG3347|consensus 99.5 2.5E-13 5.4E-18 86.6 7.6 122 2-145 16-151 (176)
36 COG0237 CoaE Dephospho-CoA kin 99.5 2E-13 4.4E-18 92.8 7.6 139 1-149 10-182 (201)
37 COG0703 AroK Shikimate kinase 99.5 2.2E-13 4.7E-18 89.7 6.4 132 1-146 10-155 (172)
38 KOG3220|consensus 99.4 9.1E-13 2E-17 87.9 9.0 139 2-150 10-185 (225)
39 PTZ00451 dephospho-CoA kinase; 99.4 7.4E-13 1.6E-17 92.6 8.8 141 1-150 9-198 (244)
40 PRK14732 coaE dephospho-CoA ki 99.4 4.5E-13 9.7E-18 91.2 7.4 140 1-150 7-181 (196)
41 PRK03839 putative kinase; Prov 99.4 4.3E-13 9.3E-18 90.2 5.9 94 1-108 8-101 (180)
42 PRK14731 coaE dephospho-CoA ki 99.4 4.2E-12 9E-17 87.3 8.4 140 1-150 13-193 (208)
43 COG1936 Predicted nucleotide k 99.3 3.5E-12 7.6E-17 83.4 6.7 126 1-148 8-142 (180)
44 PRK08118 topology modulation p 99.3 5.7E-12 1.2E-16 83.8 7.7 87 1-108 9-100 (167)
45 PRK00625 shikimate kinase; Pro 99.3 1.7E-11 3.7E-16 81.8 9.9 101 1-108 8-117 (173)
46 TIGR02173 cyt_kin_arch cytidyl 99.3 2.3E-11 4.9E-16 81.0 9.9 102 1-108 8-113 (171)
47 PRK06217 hypothetical protein; 99.3 3.5E-12 7.7E-17 86.0 5.9 93 1-109 9-106 (183)
48 PF13671 AAA_33: AAA domain; P 99.3 6.1E-12 1.3E-16 81.3 6.8 103 1-111 7-122 (143)
49 PRK03333 coaE dephospho-CoA ki 99.3 1.1E-11 2.3E-16 92.7 8.1 140 1-150 9-183 (395)
50 PRK13973 thymidylate kinase; P 99.3 2.2E-11 4.8E-16 84.0 8.1 117 1-152 11-146 (213)
51 PHA02530 pseT polynucleotide k 99.2 3E-11 6.4E-16 87.4 7.8 101 1-108 10-124 (300)
52 PRK04040 adenylate kinase; Pro 99.2 5.6E-11 1.2E-15 80.4 8.6 78 1-82 10-90 (188)
53 PRK13949 shikimate kinase; Pro 99.2 6.4E-11 1.4E-15 78.9 8.4 95 1-106 9-113 (169)
54 PRK04182 cytidylate kinase; Pr 99.2 5.7E-11 1.2E-15 79.6 7.5 103 1-108 8-113 (180)
55 cd02021 GntK Gluconate kinase 99.2 4.8E-10 1E-14 73.1 11.1 98 1-108 7-119 (150)
56 PRK12339 2-phosphoglycerate ki 99.2 7.6E-11 1.7E-15 80.2 6.6 109 1-109 11-142 (197)
57 PF01202 SKI: Shikimate kinase 99.2 7.5E-11 1.6E-15 77.7 6.2 98 2-109 1-107 (158)
58 cd02020 CMPK Cytidine monophos 99.1 6.3E-11 1.4E-15 76.8 4.9 95 1-108 7-104 (147)
59 PRK03731 aroL shikimate kinase 99.1 7.6E-10 1.6E-14 73.8 9.8 32 1-32 10-41 (171)
60 PRK07261 topology modulation p 99.1 7.8E-11 1.7E-15 78.6 4.8 87 1-108 8-100 (171)
61 PRK13974 thymidylate kinase; P 99.1 1E-10 2.3E-15 80.6 5.5 123 1-152 11-152 (212)
62 PRK13948 shikimate kinase; Pro 99.1 3.9E-10 8.4E-15 75.8 7.5 94 1-105 18-121 (182)
63 COG0283 Cmk Cytidylate kinase 99.1 2.8E-09 6.1E-14 72.3 11.5 32 1-32 12-43 (222)
64 PRK06762 hypothetical protein; 99.1 3.5E-10 7.6E-15 75.0 7.0 93 1-108 10-117 (166)
65 PRK13947 shikimate kinase; Pro 99.1 7E-10 1.5E-14 73.9 7.9 31 1-31 9-39 (171)
66 COG3265 GntK Gluconate kinase 99.1 4.4E-10 9.6E-15 71.8 5.8 127 1-145 3-143 (161)
67 PRK14021 bifunctional shikimat 99.1 8.5E-10 1.8E-14 85.6 8.6 96 1-106 14-122 (542)
68 cd00464 SK Shikimate kinase (S 99.1 1.7E-09 3.8E-14 70.7 8.7 32 1-32 7-38 (154)
69 TIGR01313 therm_gnt_kin carboh 99.0 2E-09 4.4E-14 71.1 8.0 29 1-29 6-34 (163)
70 PRK13946 shikimate kinase; Pro 99.0 5.1E-09 1.1E-13 70.7 9.8 98 1-108 18-124 (184)
71 KOG3354|consensus 99.0 4.1E-09 8.8E-14 68.0 8.5 126 1-145 20-171 (191)
72 PLN02199 shikimate kinase 99.0 4.4E-09 9.5E-14 75.1 8.9 58 1-63 110-168 (303)
73 COG0645 Predicted kinase [Gene 99.0 5.8E-09 1.3E-13 68.3 8.6 102 2-109 10-126 (170)
74 PRK00131 aroK shikimate kinase 99.0 6E-09 1.3E-13 69.4 8.7 32 1-32 12-43 (175)
75 PLN02924 thymidylate kinase 99.0 1.8E-09 3.9E-14 74.8 6.2 122 1-152 24-153 (220)
76 cd00227 CPT Chloramphenicol (C 99.0 1.6E-08 3.5E-13 67.7 10.4 107 1-108 10-132 (175)
77 PF13238 AAA_18: AAA domain; P 98.9 2.2E-09 4.7E-14 67.9 5.5 101 1-108 6-113 (129)
78 PF13207 AAA_17: AAA domain; P 98.9 8.4E-10 1.8E-14 69.3 3.4 28 1-28 7-34 (121)
79 PRK06547 hypothetical protein; 98.9 8.3E-10 1.8E-14 73.7 2.2 105 1-108 23-139 (172)
80 PRK13951 bifunctional shikimat 98.9 2.7E-09 5.9E-14 81.8 5.2 96 1-107 8-112 (488)
81 PRK14529 adenylate kinase; Pro 98.9 4.6E-09 9.9E-14 72.7 5.5 58 94-153 62-124 (223)
82 COG0125 Tmk Thymidylate kinase 98.8 3.2E-08 7E-13 67.8 8.7 115 3-152 13-145 (208)
83 PRK08154 anaerobic benzoate ca 98.8 3.3E-08 7.2E-13 71.9 9.2 31 1-31 141-171 (309)
84 PRK08233 hypothetical protein; 98.8 7.2E-09 1.6E-13 69.5 5.1 101 1-108 11-119 (182)
85 PRK05057 aroK shikimate kinase 98.8 2.4E-08 5.3E-13 66.7 7.1 32 1-32 12-43 (172)
86 TIGR00017 cmk cytidylate kinas 98.8 1.1E-07 2.4E-12 65.8 10.6 31 1-31 10-40 (217)
87 TIGR00041 DTMP_kinase thymidyl 98.8 1.4E-07 3.1E-12 64.0 10.5 18 1-18 11-28 (195)
88 PRK13975 thymidylate kinase; P 98.8 1.5E-07 3.2E-12 64.0 10.3 19 1-19 10-28 (196)
89 PRK00698 tmk thymidylate kinas 98.8 2E-08 4.4E-13 68.7 5.7 19 134-152 126-145 (205)
90 cd01672 TMPK Thymidine monopho 98.7 6.6E-08 1.4E-12 65.6 8.0 23 1-23 8-33 (200)
91 PRK11545 gntK gluconate kinase 98.7 1.7E-08 3.8E-13 66.8 5.0 27 1-27 3-29 (163)
92 PRK13477 bifunctional pantoate 98.7 7.7E-08 1.7E-12 73.9 9.0 31 1-31 292-322 (512)
93 PRK13976 thymidylate kinase; P 98.7 2.2E-07 4.8E-12 63.9 10.2 19 134-152 123-142 (209)
94 TIGR03574 selen_PSTK L-seryl-t 98.7 2.5E-07 5.4E-12 65.4 10.5 93 1-108 7-117 (249)
95 PRK05480 uridine/cytidine kina 98.7 1E-08 2.2E-13 70.5 3.2 29 1-29 14-45 (209)
96 TIGR01663 PNK-3'Pase polynucle 98.7 9.4E-08 2E-12 73.7 8.1 81 1-109 377-470 (526)
97 PRK12338 hypothetical protein; 98.7 9.8E-08 2.1E-12 69.2 7.6 111 1-111 12-154 (319)
98 PRK06696 uridine kinase; Valid 98.7 4.8E-08 1E-12 67.9 5.8 30 1-30 30-64 (223)
99 cd02030 NDUO42 NADH:Ubiquinone 98.7 4.4E-07 9.6E-12 62.9 10.2 21 2-22 8-28 (219)
100 COG2019 AdkA Archaeal adenylat 98.7 4.6E-07 9.9E-12 59.4 9.3 111 2-150 13-124 (189)
101 PF07931 CPT: Chloramphenicol 98.7 1.6E-07 3.5E-12 62.6 7.4 106 1-109 9-132 (174)
102 TIGR03575 selen_PSTK_euk L-ser 98.6 3.6E-07 7.8E-12 67.0 9.6 143 1-152 7-172 (340)
103 PF02223 Thymidylate_kin: Thym 98.6 4.6E-08 9.9E-13 66.1 4.4 25 128-152 109-136 (186)
104 cd01673 dNK Deoxyribonucleosid 98.6 4.4E-07 9.6E-12 61.6 8.6 22 1-22 7-28 (193)
105 cd02024 NRK1 Nicotinamide ribo 98.6 1.1E-07 2.3E-12 64.3 5.3 30 1-30 7-37 (187)
106 smart00072 GuKc Guanylate kina 98.6 1.9E-08 4.1E-13 67.9 1.5 139 1-143 10-167 (184)
107 PRK05541 adenylylsulfate kinas 98.6 5.3E-07 1.2E-11 60.3 8.4 30 1-31 15-49 (176)
108 PRK07933 thymidylate kinase; V 98.6 4.9E-07 1.1E-11 62.4 8.1 19 134-152 131-150 (213)
109 PRK10078 ribose 1,5-bisphospho 98.6 1.1E-07 2.4E-12 64.2 4.8 28 1-28 10-37 (186)
110 KOG3327|consensus 98.6 2.1E-07 4.6E-12 61.8 5.7 118 3-151 15-140 (208)
111 PRK07667 uridine kinase; Provi 98.5 2.7E-07 5.8E-12 62.8 6.0 32 1-32 25-61 (193)
112 cd02027 APSK Adenosine 5'-phos 98.5 1.7E-06 3.6E-11 56.5 8.8 29 1-30 7-40 (149)
113 PF08303 tRNA_lig_kinase: tRNA 98.5 1.4E-06 3.1E-11 57.0 8.1 27 1-27 7-34 (168)
114 cd02023 UMPK Uridine monophosp 98.5 5.3E-07 1.2E-11 61.5 6.2 30 1-30 7-39 (198)
115 PRK09825 idnK D-gluconate kina 98.4 1.1E-06 2.4E-11 58.9 7.3 28 1-28 11-38 (176)
116 TIGR00235 udk uridine kinase. 98.4 1.9E-07 4.1E-12 64.2 3.6 29 1-29 14-45 (207)
117 PTZ00301 uridine kinase; Provi 98.4 2.4E-07 5.1E-12 63.8 3.0 30 1-30 11-47 (210)
118 PRK00023 cmk cytidylate kinase 98.4 3.2E-07 6.9E-12 63.9 3.6 32 1-32 12-43 (225)
119 COG0572 Udk Uridine kinase [Nu 98.3 4.6E-07 9.9E-12 62.1 3.5 30 1-30 16-48 (218)
120 PF06414 Zeta_toxin: Zeta toxi 98.3 7.6E-07 1.7E-11 60.8 4.4 101 1-109 23-143 (199)
121 COG1428 Deoxynucleoside kinase 98.3 3E-06 6.5E-11 57.6 6.8 22 1-22 12-33 (216)
122 PRK04220 2-phosphoglycerate ki 98.3 3.8E-06 8.3E-11 60.5 7.7 111 1-111 100-239 (301)
123 PLN02348 phosphoribulokinase 98.3 2.2E-06 4.8E-11 63.7 6.1 29 1-29 57-105 (395)
124 PRK05537 bifunctional sulfate 98.3 8.5E-06 1.8E-10 63.9 9.3 31 1-32 400-436 (568)
125 COG4639 Predicted kinase [Gene 98.3 7.4E-06 1.6E-10 53.1 7.4 97 1-109 10-119 (168)
126 PRK00889 adenylylsulfate kinas 98.2 1.1E-05 2.3E-10 54.0 8.3 27 1-27 12-43 (175)
127 TIGR00455 apsK adenylylsulfate 98.2 1.4E-05 3E-10 53.9 8.9 29 1-30 26-59 (184)
128 TIGR02322 phosphon_PhnN phosph 98.2 3.9E-06 8.4E-11 56.3 6.0 19 1-19 9-27 (179)
129 TIGR03263 guanyl_kin guanylate 98.2 4.5E-07 9.8E-12 60.8 1.3 24 1-24 9-32 (180)
130 PRK09518 bifunctional cytidyla 98.2 7E-07 1.5E-11 71.8 2.4 32 1-32 9-40 (712)
131 cd02025 PanK Pantothenate kina 98.2 1.9E-06 4.2E-11 59.8 3.8 29 1-29 7-42 (220)
132 PRK14531 adenylate kinase; Pro 98.2 2.9E-06 6.4E-11 57.2 4.6 43 110-152 78-125 (183)
133 PRK11860 bifunctional 3-phosph 98.2 6.3E-06 1.4E-10 65.9 6.9 31 1-31 450-480 (661)
134 PRK09270 nucleoside triphospha 98.2 4.7E-06 1E-10 58.2 5.4 69 73-147 138-225 (229)
135 PTZ00088 adenylate kinase 1; P 98.2 4.4E-06 9.4E-11 58.3 5.2 54 98-152 72-127 (229)
136 PRK14737 gmk guanylate kinase; 98.2 2.1E-06 4.6E-11 58.1 3.5 71 70-150 92-175 (186)
137 PRK14526 adenylate kinase; Pro 98.2 4.1E-06 8.9E-11 57.8 4.9 53 98-152 66-119 (211)
138 PRK14532 adenylate kinase; Pro 98.2 4.3E-06 9.3E-11 56.5 5.0 54 98-152 66-124 (188)
139 PRK07429 phosphoribulokinase; 98.1 1.2E-05 2.7E-10 58.9 7.5 28 1-28 16-46 (327)
140 PHA00729 NTP-binding motif con 98.1 1.3E-05 2.8E-10 55.6 7.2 18 1-18 25-42 (226)
141 PRK12269 bifunctional cytidyla 98.1 2.7E-06 5.9E-11 69.2 4.3 32 1-32 42-73 (863)
142 COG4088 Predicted nucleotide k 98.1 2.5E-05 5.5E-10 53.2 8.0 25 1-25 9-36 (261)
143 PRK00279 adk adenylate kinase; 98.1 8E-06 1.7E-10 56.5 5.6 54 98-152 66-124 (215)
144 TIGR01359 UMP_CMP_kin_fam UMP- 98.1 7.7E-06 1.7E-10 55.0 5.3 42 111-152 76-121 (183)
145 KOG3079|consensus 98.1 4.2E-05 9.1E-10 51.0 8.4 86 12-112 42-138 (195)
146 PRK02496 adk adenylate kinase; 98.1 1E-05 2.2E-10 54.5 5.6 54 98-152 67-125 (184)
147 PF01583 APS_kinase: Adenylyls 98.1 1.1E-05 2.5E-10 52.8 5.5 27 1-27 10-41 (156)
148 PF00004 AAA: ATPase family as 98.0 3E-06 6.6E-11 53.6 2.4 28 1-28 6-35 (132)
149 PRK03846 adenylylsulfate kinas 98.0 4.6E-05 1E-09 52.0 7.9 28 1-28 32-64 (198)
150 COG2074 2-phosphoglycerate kin 98.0 2.5E-05 5.4E-10 54.7 6.4 34 1-34 97-130 (299)
151 PRK12337 2-phosphoglycerate ki 98.0 2.5E-05 5.4E-10 59.4 6.9 34 1-34 263-296 (475)
152 PRK14527 adenylate kinase; Pro 98.0 1.4E-05 3E-10 54.2 5.2 42 111-152 83-129 (191)
153 COG0529 CysC Adenylylsulfate k 98.0 4.4E-05 9.5E-10 50.7 7.1 32 1-32 31-66 (197)
154 cd01428 ADK Adenylate kinase ( 98.0 1.8E-05 3.9E-10 53.6 5.2 43 110-152 76-122 (194)
155 PRK00300 gmk guanylate kinase; 98.0 8.2E-06 1.8E-10 55.8 3.4 18 1-18 13-30 (205)
156 PLN02200 adenylate kinase fami 97.9 1.9E-05 4E-10 55.4 4.9 43 110-152 119-163 (234)
157 PF08433 KTI12: Chromatin asso 97.9 0.0002 4.4E-09 51.2 10.1 96 1-110 9-122 (270)
158 PRK14530 adenylate kinase; Pro 97.9 1.9E-05 4.1E-10 54.6 4.7 41 111-152 82-123 (215)
159 cd02026 PRK Phosphoribulokinas 97.9 5.2E-05 1.1E-09 54.4 6.7 28 1-28 7-37 (273)
160 cd02019 NK Nucleoside/nucleoti 97.9 1.1E-05 2.4E-10 45.6 2.5 17 1-17 7-23 (69)
161 COG0194 Gmk Guanylate kinase [ 97.9 8.3E-06 1.8E-10 54.5 1.9 19 1-19 12-30 (191)
162 PHA03132 thymidine kinase; Pro 97.8 0.00011 2.3E-09 57.6 8.0 18 135-152 401-419 (580)
163 cd02028 UMPK_like Uridine mono 97.8 1.3E-05 2.8E-10 53.9 2.6 30 1-30 7-41 (179)
164 KOG0744|consensus 97.8 2.8E-05 6.2E-10 56.3 4.4 33 1-33 185-228 (423)
165 TIGR00554 panK_bact pantothena 97.8 3.5E-05 7.5E-10 55.6 4.9 29 1-29 70-105 (290)
166 PRK00091 miaA tRNA delta(2)-is 97.8 2.9E-05 6.2E-10 56.5 4.2 27 1-27 12-38 (307)
167 PLN02459 probable adenylate ki 97.8 2.4E-05 5.2E-10 55.4 3.5 38 73-110 110-156 (261)
168 PF05496 RuvB_N: Holliday junc 97.8 1.6E-05 3.4E-10 55.0 2.1 22 1-22 58-79 (233)
169 PRK05506 bifunctional sulfate 97.7 0.00014 3.1E-09 58.0 7.5 29 1-30 468-501 (632)
170 PF00485 PRK: Phosphoribulokin 97.7 2.1E-05 4.5E-10 53.5 2.3 18 1-18 7-24 (194)
171 PLN02674 adenylate kinase 97.7 3.3E-05 7.1E-10 54.3 3.2 38 73-110 110-161 (244)
172 PF01591 6PF2K: 6-phosphofruct 97.7 0.00041 8.8E-09 48.2 8.5 87 2-93 21-117 (222)
173 PRK05800 cobU adenosylcobinami 97.7 2.4E-05 5.3E-10 52.2 2.2 32 1-32 9-42 (170)
174 PF13189 Cytidylate_kin2: Cyti 97.7 3.5E-05 7.5E-10 51.9 2.8 105 2-108 8-135 (179)
175 COG2256 MGS1 ATPase related to 97.7 2.8E-05 6.1E-10 57.7 2.3 26 1-26 56-81 (436)
176 PF01745 IPT: Isopentenyl tran 97.7 7.2E-05 1.6E-09 51.3 4.0 78 1-80 9-98 (233)
177 COG0563 Adk Adenylate kinase a 97.6 0.00015 3.3E-09 48.7 5.4 57 95-152 63-124 (178)
178 PLN02165 adenylate isopentenyl 97.6 4.5E-05 9.9E-10 55.8 2.6 27 1-27 51-77 (334)
179 KOG0739|consensus 97.6 0.00045 9.7E-09 49.9 7.1 34 1-34 174-209 (439)
180 KOG3308|consensus 97.6 0.00042 9.2E-09 47.0 6.6 31 2-32 13-44 (225)
181 PRK13808 adenylate kinase; Pro 97.5 8.1E-05 1.7E-09 54.6 3.2 16 94-109 114-129 (333)
182 TIGR00174 miaA tRNA isopenteny 97.5 6.5E-05 1.4E-09 54.1 2.6 26 1-26 7-32 (287)
183 PF13521 AAA_28: AAA domain; P 97.5 6E-05 1.3E-09 49.8 2.2 31 1-34 7-37 (163)
184 TIGR00390 hslU ATP-dependent p 97.5 7.2E-05 1.6E-09 56.4 2.6 26 1-26 55-80 (441)
185 PRK05416 glmZ(sRNA)-inactivati 97.5 0.0008 1.7E-08 48.6 7.6 22 1-23 14-35 (288)
186 PF07728 AAA_5: AAA domain (dy 97.5 0.0001 2.2E-09 47.2 2.7 22 1-22 7-28 (139)
187 PLN02840 tRNA dimethylallyltra 97.5 7.6E-05 1.7E-09 56.3 2.3 26 1-26 29-54 (421)
188 KOG2702|consensus 97.4 0.00085 1.8E-08 46.7 7.0 39 73-111 236-283 (323)
189 PRK05439 pantothenate kinase; 97.4 7.4E-05 1.6E-09 54.4 2.0 30 1-30 94-130 (311)
190 PRK05201 hslU ATP-dependent pr 97.4 9.6E-05 2.1E-09 55.7 2.5 26 1-26 58-83 (443)
191 TIGR01223 Pmev_kin_anim phosph 97.4 0.0022 4.9E-08 42.8 8.6 134 2-150 8-168 (182)
192 smart00382 AAA ATPases associa 97.4 9E-05 1.9E-09 46.7 1.9 20 1-20 10-29 (148)
193 TIGR01650 PD_CobS cobaltochela 97.3 0.00015 3.3E-09 53.0 2.6 22 1-22 72-93 (327)
194 smart00763 AAA_PrkA PrkA AAA d 97.3 0.00014 3E-09 53.8 2.4 19 1-19 86-104 (361)
195 PHA02575 1 deoxynucleoside mon 97.3 0.00026 5.6E-09 49.0 3.5 32 1-33 8-40 (227)
196 PF13401 AAA_22: AAA domain; P 97.3 0.00059 1.3E-08 43.0 4.9 17 1-17 12-28 (131)
197 CHL00195 ycf46 Ycf46; Provisio 97.3 0.00016 3.5E-09 55.8 2.6 24 1-24 267-290 (489)
198 PRK12724 flagellar biosynthesi 97.3 0.006 1.3E-07 46.3 10.7 17 1-17 231-247 (432)
199 PRK14528 adenylate kinase; Pro 97.3 0.00026 5.7E-09 47.9 3.3 34 77-110 84-131 (186)
200 PRK06761 hypothetical protein; 97.3 0.00015 3.3E-09 52.1 2.1 24 1-24 11-34 (282)
201 PRK05342 clpX ATP-dependent pr 97.3 0.00019 4.2E-09 54.3 2.7 25 1-25 116-140 (412)
202 COG4185 Uncharacterized protei 97.3 0.00048 1E-08 45.2 4.1 31 1-31 10-42 (187)
203 KOG0733|consensus 97.3 0.00016 3.5E-09 56.6 2.2 24 1-24 231-254 (802)
204 TIGR02640 gas_vesic_GvpN gas v 97.3 0.00024 5.2E-09 50.7 3.0 22 1-22 29-50 (262)
205 CHL00181 cbbX CbbX; Provisiona 97.3 0.00033 7.1E-09 50.6 3.5 32 1-32 67-107 (287)
206 PF03029 ATP_bind_1: Conserved 97.2 0.00022 4.8E-09 50.1 2.5 19 1-19 4-22 (238)
207 PLN00020 ribulose bisphosphate 97.2 0.00022 4.8E-09 53.0 2.5 32 1-32 156-189 (413)
208 TIGR02881 spore_V_K stage V sp 97.2 0.00023 4.9E-09 50.7 2.5 17 1-17 50-66 (261)
209 PRK09087 hypothetical protein; 97.2 0.00041 8.8E-09 48.4 3.4 31 1-31 52-82 (226)
210 COG3896 Chloramphenicol 3-O-ph 97.2 0.0031 6.6E-08 41.4 7.1 111 2-112 32-165 (205)
211 COG1618 Predicted nucleotide k 97.2 0.0003 6.4E-09 46.2 2.4 80 1-80 13-109 (179)
212 PF07726 AAA_3: ATPase family 97.2 0.00014 3E-09 46.0 0.9 22 1-22 7-28 (131)
213 PRK03992 proteasome-activating 97.2 0.00029 6.4E-09 53.0 2.6 30 1-30 173-204 (389)
214 TIGR00382 clpX endopeptidase C 97.1 0.00031 6.7E-09 53.1 2.6 23 1-23 124-146 (413)
215 TIGR01241 FtsH_fam ATP-depende 97.1 0.00031 6.8E-09 54.5 2.7 24 1-24 96-119 (495)
216 cd00009 AAA The AAA+ (ATPases 97.1 0.00037 7.9E-09 44.3 2.6 17 1-17 27-43 (151)
217 TIGR01351 adk adenylate kinase 97.1 0.00058 1.3E-08 47.0 3.6 36 74-109 80-126 (210)
218 PRK09169 hypothetical protein; 97.1 0.0011 2.4E-08 58.5 5.7 93 1-106 2118-2219(2316)
219 PRK15453 phosphoribulokinase; 97.1 0.00027 5.9E-09 50.6 1.9 29 1-29 13-46 (290)
220 PHA02244 ATPase-like protein 97.1 0.00038 8.2E-09 51.8 2.7 28 1-28 127-154 (383)
221 PLN02748 tRNA dimethylallyltra 97.1 0.00035 7.5E-09 53.6 2.5 26 1-26 30-55 (468)
222 PF13245 AAA_19: Part of AAA d 97.1 0.00046 1E-08 39.7 2.5 17 1-17 18-35 (76)
223 COG1222 RPT1 ATP-dependent 26S 97.1 0.0006 1.3E-08 50.2 3.4 36 1-36 193-230 (406)
224 PTZ00454 26S protease regulato 97.1 0.00041 8.9E-09 52.4 2.6 24 1-24 187-210 (398)
225 KOG0743|consensus 97.1 0.00038 8.2E-09 52.5 2.3 23 1-23 243-265 (457)
226 TIGR01242 26Sp45 26S proteasom 97.0 0.0005 1.1E-08 51.3 2.7 23 1-23 164-186 (364)
227 TIGR02880 cbbX_cfxQ probable R 97.0 0.00071 1.5E-08 48.9 3.4 30 1-30 66-104 (284)
228 cd02029 PRK_like Phosphoribulo 97.0 0.00035 7.7E-09 49.7 1.4 29 1-29 7-40 (277)
229 PF03215 Rad17: Rad17 cell cyc 96.9 0.00069 1.5E-08 52.8 2.9 22 1-22 53-74 (519)
230 PRK06620 hypothetical protein; 96.9 0.00059 1.3E-08 47.2 2.3 24 1-24 52-75 (214)
231 PF00910 RNA_helicase: RNA hel 96.9 0.00071 1.5E-08 41.6 2.5 17 1-17 6-22 (107)
232 PF13173 AAA_14: AAA domain 96.9 0.0007 1.5E-08 42.9 2.5 29 1-29 10-42 (128)
233 PRK06835 DNA replication prote 96.9 0.0089 1.9E-07 44.1 8.5 32 1-32 191-227 (329)
234 TIGR00150 HI0065_YjeE ATPase, 96.9 0.00076 1.7E-08 43.1 2.6 20 1-20 30-49 (133)
235 PRK08099 bifunctional DNA-bind 96.9 0.00077 1.7E-08 50.9 2.9 30 1-32 227-256 (399)
236 cd00071 GMPK Guanosine monopho 96.9 0.00061 1.3E-08 43.8 2.0 18 1-18 7-24 (137)
237 PRK08116 hypothetical protein; 96.9 0.0048 1E-07 44.2 6.8 32 1-32 122-158 (268)
238 COG2255 RuvB Holliday junction 96.9 0.00082 1.8E-08 48.1 2.7 21 1-21 60-80 (332)
239 PRK04195 replication factor C 96.9 0.0007 1.5E-08 52.4 2.6 23 1-23 47-69 (482)
240 PTZ00361 26 proteosome regulat 96.9 0.00078 1.7E-08 51.4 2.6 23 1-23 225-247 (438)
241 CHL00176 ftsH cell division pr 96.9 0.00084 1.8E-08 53.6 2.8 24 1-24 224-247 (638)
242 PF03668 ATP_bind_2: P-loop AT 96.9 0.012 2.6E-07 42.3 8.3 22 1-23 9-30 (284)
243 PRK00080 ruvB Holliday junctio 96.9 0.00095 2.1E-08 49.1 2.9 21 1-21 59-79 (328)
244 PRK08903 DnaA regulatory inact 96.8 0.0015 3.2E-08 45.5 3.6 30 1-30 50-84 (227)
245 PLN02772 guanylate kinase 96.8 0.0022 4.8E-08 48.1 4.6 17 1-17 143-159 (398)
246 PTZ00322 6-phosphofructo-2-kin 96.8 0.009 1.9E-07 48.2 8.4 24 1-24 223-246 (664)
247 PLN02796 D-glycerate 3-kinase 96.8 0.00071 1.5E-08 49.9 2.0 29 1-29 108-141 (347)
248 PRK13342 recombination factor 96.8 0.00088 1.9E-08 50.9 2.6 23 1-23 44-66 (413)
249 PRK08939 primosomal protein Dn 96.8 0.021 4.7E-07 41.7 9.6 32 1-32 164-200 (306)
250 PF03266 NTPase_1: NTPase; In 96.8 0.0011 2.4E-08 44.1 2.7 17 1-17 7-23 (168)
251 TIGR00635 ruvB Holliday juncti 96.8 0.0011 2.4E-08 48.1 3.0 20 1-20 38-57 (305)
252 TIGR01526 nadR_NMN_Atrans nico 96.8 0.0011 2.5E-08 48.7 2.9 22 1-22 170-191 (325)
253 PF05729 NACHT: NACHT domain 96.8 0.001 2.2E-08 43.5 2.4 17 1-17 8-24 (166)
254 PRK06893 DNA replication initi 96.8 0.0016 3.4E-08 45.6 3.3 25 1-25 47-76 (229)
255 PRK12377 putative replication 96.8 0.0022 4.8E-08 45.4 4.0 31 1-31 109-144 (248)
256 KOG0731|consensus 96.7 0.00088 1.9E-08 53.9 2.0 24 1-24 352-375 (774)
257 TIGR03420 DnaA_homol_Hda DnaA 96.7 0.0014 3.1E-08 45.3 2.8 29 1-29 46-79 (226)
258 PF07724 AAA_2: AAA domain (Cd 96.7 0.0013 2.9E-08 43.9 2.4 19 1-19 11-29 (171)
259 TIGR01243 CDC48 AAA family ATP 96.7 0.0011 2.4E-08 53.9 2.4 30 1-30 495-526 (733)
260 PF01695 IstB_IS21: IstB-like 96.7 0.0026 5.7E-08 42.7 3.8 32 1-32 55-91 (178)
261 PLN02318 phosphoribulokinase/u 96.7 0.00092 2E-08 52.6 1.7 28 1-28 73-101 (656)
262 PRK14962 DNA polymerase III su 96.6 0.0014 3.1E-08 50.6 2.6 19 1-19 44-62 (472)
263 COG0464 SpoVK ATPases of the A 96.6 0.0012 2.7E-08 51.2 2.3 24 1-24 284-307 (494)
264 PRK12402 replication factor C 96.6 0.0019 4.2E-08 47.4 3.2 28 1-28 44-78 (337)
265 KOG0730|consensus 96.6 0.0015 3.3E-08 51.5 2.4 32 1-32 476-509 (693)
266 KOG3062|consensus 96.6 0.013 2.9E-07 40.7 6.7 112 2-128 10-139 (281)
267 PRK06921 hypothetical protein; 96.6 0.0081 1.8E-07 43.0 6.0 30 1-30 125-160 (266)
268 COG0714 MoxR-like ATPases [Gen 96.6 0.0017 3.7E-08 47.9 2.6 21 1-21 51-71 (329)
269 PRK08084 DNA replication initi 96.6 0.0018 3.9E-08 45.4 2.6 27 1-27 53-84 (235)
270 PRK06526 transposase; Provisio 96.6 0.0027 5.9E-08 45.1 3.5 32 1-32 106-142 (254)
271 PF06745 KaiC: KaiC; InterPro 96.6 0.011 2.3E-07 41.1 6.4 78 1-80 27-124 (226)
272 PF00308 Bac_DnaA: Bacterial d 96.5 0.0084 1.8E-07 41.7 5.7 33 1-33 42-81 (219)
273 TIGR03015 pepcterm_ATPase puta 96.5 0.0018 3.8E-08 46.1 2.3 18 1-18 51-68 (269)
274 PRK07952 DNA replication prote 96.5 0.0035 7.6E-08 44.3 3.8 31 1-31 107-142 (244)
275 cd03115 SRP The signal recogni 96.5 0.002 4.4E-08 42.8 2.5 25 1-25 8-37 (173)
276 PRK09183 transposase/IS protei 96.5 0.0036 7.7E-08 44.7 3.8 30 1-30 110-144 (259)
277 PRK14961 DNA polymerase III su 96.5 0.002 4.4E-08 48.1 2.7 19 1-19 46-64 (363)
278 TIGR03689 pup_AAA proteasome A 96.5 0.0018 3.9E-08 50.3 2.4 20 1-20 224-243 (512)
279 TIGR00763 lon ATP-dependent pr 96.5 0.0018 3.9E-08 53.1 2.5 22 1-22 355-376 (775)
280 PRK14086 dnaA chromosomal repl 96.5 0.021 4.6E-07 45.4 8.2 32 1-32 322-360 (617)
281 KOG1970|consensus 96.5 0.0019 4.2E-08 50.1 2.4 22 1-22 118-139 (634)
282 COG1124 DppF ABC-type dipeptid 96.5 0.0017 3.8E-08 45.4 1.9 15 1-15 41-55 (252)
283 TIGR01243 CDC48 AAA family ATP 96.5 0.0019 4.2E-08 52.5 2.5 23 1-23 220-242 (733)
284 COG1855 ATPase (PilT family) [ 96.5 0.0021 4.5E-08 49.0 2.4 17 1-17 271-287 (604)
285 COG3709 Uncharacterized compon 96.5 0.019 4.1E-07 38.0 6.5 42 70-111 92-139 (192)
286 PLN03025 replication factor C 96.5 0.0021 4.6E-08 47.1 2.5 17 1-17 42-58 (319)
287 PRK13341 recombination factor 96.5 0.0023 5.1E-08 51.8 2.9 27 1-27 60-86 (725)
288 PRK06645 DNA polymerase III su 96.5 0.0023 4.9E-08 49.8 2.7 21 1-21 51-71 (507)
289 cd01120 RecA-like_NTPases RecA 96.4 0.0025 5.5E-08 41.4 2.5 29 1-29 7-40 (165)
290 PRK14956 DNA polymerase III su 96.4 0.0023 4.9E-08 49.3 2.4 20 1-20 48-67 (484)
291 COG0466 Lon ATP-dependent Lon 96.4 0.002 4.4E-08 51.4 2.2 26 1-26 358-385 (782)
292 PLN03046 D-glycerate 3-kinase; 96.4 0.0017 3.8E-08 49.1 1.7 28 1-28 220-252 (460)
293 KOG0738|consensus 96.4 0.0026 5.7E-08 47.5 2.6 30 1-30 253-284 (491)
294 PRK11034 clpA ATP-dependent Cl 96.4 0.0025 5.4E-08 51.9 2.6 27 1-27 496-524 (758)
295 PRK08181 transposase; Validate 96.4 0.0055 1.2E-07 43.9 4.0 32 1-32 114-150 (269)
296 PRK10733 hflB ATP-dependent me 96.4 0.0025 5.4E-08 51.1 2.5 24 1-24 193-216 (644)
297 KOG1969|consensus 96.3 0.0026 5.5E-08 51.0 2.4 23 1-23 334-356 (877)
298 TIGR02655 circ_KaiC circadian 96.3 0.0045 9.8E-08 48.0 3.8 79 1-81 271-363 (484)
299 cd01124 KaiC KaiC is a circadi 96.3 0.003 6.5E-08 42.3 2.5 25 1-25 7-36 (187)
300 cd00820 PEPCK_HprK Phosphoenol 96.3 0.0024 5.2E-08 39.2 1.8 14 1-14 23-36 (107)
301 PRK14738 gmk guanylate kinase; 96.3 0.0025 5.4E-08 43.8 1.9 16 1-16 21-36 (206)
302 cd01918 HprK_C HprK/P, the bif 96.3 0.0039 8.5E-08 40.6 2.7 22 1-23 22-43 (149)
303 TIGR03881 KaiC_arch_4 KaiC dom 96.3 0.013 2.8E-07 40.8 5.5 16 1-16 28-43 (229)
304 PF02367 UPF0079: Uncharacteri 96.3 0.0038 8.2E-08 39.4 2.5 20 1-20 23-42 (123)
305 PF06309 Torsin: Torsin; Inte 96.3 0.0037 8.1E-08 39.5 2.4 17 1-17 61-77 (127)
306 cd01131 PilT Pilus retraction 96.3 0.0033 7.2E-08 42.9 2.4 18 1-18 9-26 (198)
307 COG0324 MiaA tRNA delta(2)-iso 96.3 0.004 8.7E-08 45.3 2.9 27 1-27 11-37 (308)
308 KOG0737|consensus 96.3 0.0029 6.4E-08 46.7 2.1 32 1-32 135-168 (386)
309 PRK06067 flagellar accessory p 96.3 0.013 2.9E-07 40.9 5.4 29 1-29 33-66 (234)
310 CHL00206 ycf2 Ycf2; Provisiona 96.2 0.0028 6E-08 55.8 2.3 30 1-30 1638-1669(2281)
311 PRK14955 DNA polymerase III su 96.2 0.0037 8E-08 47.3 2.7 20 1-20 46-65 (397)
312 KOG3078|consensus 96.2 0.0044 9.4E-08 43.3 2.8 37 73-109 94-140 (235)
313 PF13086 AAA_11: AAA domain; P 96.2 0.0037 8.1E-08 43.1 2.5 17 1-17 25-41 (236)
314 PRK14964 DNA polymerase III su 96.2 0.0036 7.7E-08 48.5 2.6 20 1-20 43-62 (491)
315 KOG0733|consensus 96.2 0.0032 6.8E-08 49.7 2.2 32 1-32 553-586 (802)
316 cd00544 CobU Adenosylcobinamid 96.2 0.0046 1E-07 41.2 2.8 24 1-24 7-32 (169)
317 TIGR03877 thermo_KaiC_1 KaiC d 96.2 0.016 3.6E-07 40.6 5.7 26 1-26 29-59 (237)
318 KOG2004|consensus 96.2 0.0028 6.1E-08 50.7 1.8 27 1-27 446-474 (906)
319 PHA02544 44 clamp loader, smal 96.2 0.0041 8.8E-08 45.4 2.6 20 1-20 51-70 (316)
320 KOG3877|consensus 96.2 0.0038 8.3E-08 44.7 2.2 30 1-30 79-111 (393)
321 COG1219 ClpX ATP-dependent pro 96.2 0.0048 1E-07 45.1 2.8 24 1-24 105-128 (408)
322 PLN02842 nucleotide kinase 96.1 0.0058 1.3E-07 47.4 3.4 38 73-110 77-124 (505)
323 PRK14960 DNA polymerase III su 96.1 0.0041 9E-08 49.7 2.6 20 1-20 45-64 (702)
324 KOG0989|consensus 96.1 0.0046 9.9E-08 44.8 2.6 29 1-29 65-93 (346)
325 PRK14958 DNA polymerase III su 96.1 0.0042 9.1E-08 48.5 2.6 20 1-20 46-65 (509)
326 cd01983 Fer4_NifH The Fer4_Nif 96.1 0.0058 1.3E-07 36.0 2.7 24 2-25 8-34 (99)
327 PRK14957 DNA polymerase III su 96.1 0.0044 9.6E-08 48.6 2.7 19 1-19 46-64 (546)
328 PF06068 TIP49: TIP49 C-termin 96.1 0.0039 8.4E-08 46.4 2.2 28 1-28 58-89 (398)
329 PRK14088 dnaA chromosomal repl 96.1 0.008 1.7E-07 46.2 3.9 32 1-32 138-176 (440)
330 PRK04328 hypothetical protein; 96.1 0.018 4E-07 40.8 5.5 16 1-16 31-46 (249)
331 PF00448 SRP54: SRP54-type pro 96.1 0.005 1.1E-07 42.1 2.5 17 1-17 9-25 (196)
332 COG0378 HypB Ni2+-binding GTPa 96.1 0.005 1.1E-07 41.7 2.4 17 1-17 21-37 (202)
333 COG1223 Predicted ATPase (AAA+ 96.1 0.0037 7.9E-08 44.5 1.8 33 1-33 159-193 (368)
334 PRK14963 DNA polymerase III su 96.1 0.0045 9.7E-08 48.3 2.4 19 1-19 44-62 (504)
335 PRK11331 5-methylcytosine-spec 96.1 0.0048 1E-07 47.2 2.5 18 1-18 202-219 (459)
336 COG1484 DnaC DNA replication p 96.0 0.0087 1.9E-07 42.6 3.7 32 1-32 113-149 (254)
337 PRK05642 DNA replication initi 96.0 0.0086 1.9E-07 42.0 3.6 30 1-30 53-87 (234)
338 PRK09435 membrane ATPase/prote 96.0 0.0051 1.1E-07 45.4 2.5 17 1-17 64-80 (332)
339 TIGR02639 ClpA ATP-dependent C 96.0 0.0046 9.9E-08 50.4 2.5 29 1-29 492-522 (731)
340 PRK10646 ADP-binding protein; 96.0 0.0054 1.2E-07 40.2 2.3 18 2-19 37-54 (153)
341 PRK14949 DNA polymerase III su 96.0 0.0047 1E-07 50.9 2.4 20 1-20 46-65 (944)
342 PRK10787 DNA-binding ATP-depen 96.0 0.005 1.1E-07 50.5 2.5 22 1-22 357-378 (784)
343 PRK15455 PrkA family serine pr 96.0 0.0045 9.8E-08 48.8 2.1 22 1-22 111-133 (644)
344 PRK10751 molybdopterin-guanine 96.0 0.0057 1.2E-07 40.9 2.3 18 1-18 14-31 (173)
345 COG3842 PotA ABC-type spermidi 95.9 0.0047 1E-07 45.8 2.0 15 1-15 39-53 (352)
346 PF01078 Mg_chelatase: Magnesi 95.9 0.0056 1.2E-07 42.0 2.2 17 1-17 30-46 (206)
347 PRK14969 DNA polymerase III su 95.9 0.0059 1.3E-07 47.9 2.6 20 1-20 46-65 (527)
348 PF03308 ArgK: ArgK protein; 95.9 0.0062 1.3E-07 43.2 2.4 17 1-17 37-53 (266)
349 PF03205 MobB: Molybdopterin g 95.9 0.0072 1.6E-07 39.0 2.5 17 1-17 8-24 (140)
350 PF00625 Guanylate_kin: Guanyl 95.9 0.0074 1.6E-07 40.6 2.7 18 1-18 10-27 (183)
351 TIGR00176 mobB molybdopterin-g 95.9 0.0071 1.5E-07 39.7 2.5 17 1-17 7-23 (155)
352 PF13555 AAA_29: P-loop contai 95.9 0.007 1.5E-07 33.3 2.0 17 1-17 31-47 (62)
353 KOG1533|consensus 95.9 0.004 8.6E-08 43.5 1.3 17 1-17 10-26 (290)
354 COG0802 Predicted ATPase or ki 95.9 0.0066 1.4E-07 39.4 2.2 18 2-19 34-51 (149)
355 TIGR00064 ftsY signal recognit 95.8 0.0068 1.5E-07 43.6 2.4 17 1-17 80-96 (272)
356 COG1116 TauB ABC-type nitrate/ 95.8 0.0057 1.2E-07 43.0 2.0 15 1-15 37-51 (248)
357 KOG0735|consensus 95.8 0.0059 1.3E-07 49.0 2.2 32 1-32 709-742 (952)
358 PRK10416 signal recognition pa 95.8 0.0072 1.6E-07 44.4 2.5 17 1-17 122-138 (318)
359 PHA03136 thymidine kinase; Pro 95.8 0.086 1.9E-06 39.5 8.0 21 132-152 188-209 (378)
360 COG4240 Predicted kinase [Gene 95.8 0.0093 2E-07 41.6 2.8 32 1-32 58-95 (300)
361 KOG0729|consensus 95.8 0.01 2.3E-07 42.4 3.1 34 1-34 219-254 (435)
362 PF13191 AAA_16: AAA ATPase do 95.8 0.0077 1.7E-07 40.1 2.4 17 1-17 32-48 (185)
363 cd01394 radB RadB. The archaea 95.8 0.0081 1.8E-07 41.5 2.5 25 1-25 27-56 (218)
364 PRK14729 miaA tRNA delta(2)-is 95.8 0.0096 2.1E-07 43.3 2.9 26 1-27 12-37 (300)
365 TIGR00101 ureG urease accessor 95.7 0.0083 1.8E-07 41.1 2.5 17 1-17 9-25 (199)
366 TIGR00362 DnaA chromosomal rep 95.7 0.015 3.4E-07 44.0 4.1 32 1-32 144-182 (405)
367 KOG0651|consensus 95.7 0.012 2.7E-07 42.8 3.4 33 1-33 174-208 (388)
368 KOG0736|consensus 95.7 0.0068 1.5E-07 49.0 2.2 24 1-24 713-736 (953)
369 KOG2028|consensus 95.7 0.0069 1.5E-07 45.2 2.0 24 1-24 170-196 (554)
370 TIGR02639 ClpA ATP-dependent C 95.7 0.0087 1.9E-07 48.8 2.8 17 1-17 211-227 (731)
371 PRK11784 tRNA 2-selenouridine 95.7 0.032 7E-07 41.5 5.5 95 1-107 149-256 (345)
372 TIGR02237 recomb_radB DNA repa 95.7 0.0091 2E-07 40.9 2.5 26 1-26 20-50 (209)
373 cd01130 VirB11-like_ATPase Typ 95.7 0.0081 1.8E-07 40.6 2.2 17 1-17 33-49 (186)
374 PRK13695 putative NTPase; Prov 95.7 0.0094 2E-07 39.7 2.5 17 1-17 8-24 (174)
375 PRK07994 DNA polymerase III su 95.7 0.0077 1.7E-07 48.2 2.3 20 1-20 46-65 (647)
376 cd03116 MobB Molybdenum is an 95.7 0.0098 2.1E-07 39.3 2.5 17 1-17 9-25 (159)
377 PF01443 Viral_helicase1: Vira 95.7 0.0082 1.8E-07 41.7 2.2 17 1-17 6-22 (234)
378 COG0396 sufC Cysteine desulfur 95.7 0.0064 1.4E-07 42.4 1.6 21 1-21 38-58 (251)
379 COG1126 GlnQ ABC-type polar am 95.6 0.0073 1.6E-07 41.7 1.9 14 1-14 36-49 (240)
380 PRK10463 hydrogenase nickel in 95.6 0.0091 2E-07 43.2 2.4 17 1-17 112-128 (290)
381 PRK05896 DNA polymerase III su 95.6 0.0095 2.1E-07 47.2 2.7 20 1-20 46-65 (605)
382 COG3839 MalK ABC-type sugar tr 95.6 0.0075 1.6E-07 44.5 2.0 15 1-15 37-51 (338)
383 PRK00149 dnaA chromosomal repl 95.6 0.015 3.2E-07 44.8 3.7 32 1-32 156-194 (450)
384 PRK08533 flagellar accessory p 95.6 0.0095 2.1E-07 41.7 2.4 17 1-17 32-48 (230)
385 COG1224 TIP49 DNA helicase TIP 95.6 0.011 2.3E-07 43.9 2.6 30 1-30 73-106 (450)
386 PF10662 PduV-EutP: Ethanolami 95.6 0.0086 1.9E-07 38.7 1.8 15 1-15 9-23 (143)
387 cd03292 ABC_FtsE_transporter F 95.6 0.0086 1.9E-07 41.2 2.0 17 1-17 35-51 (214)
388 PRK13531 regulatory ATPase Rav 95.5 0.009 1.9E-07 46.2 2.2 18 1-18 47-64 (498)
389 COG4619 ABC-type uncharacteriz 95.5 0.0092 2E-07 39.9 2.0 15 1-15 37-51 (223)
390 PRK14954 DNA polymerase III su 95.5 0.011 2.3E-07 47.3 2.7 20 1-20 46-65 (620)
391 COG1136 SalX ABC-type antimicr 95.5 0.009 1.9E-07 41.6 2.0 15 1-15 39-53 (226)
392 PRK14951 DNA polymerase III su 95.5 0.01 2.3E-07 47.3 2.6 19 1-19 46-64 (618)
393 PRK14722 flhF flagellar biosyn 95.5 0.01 2.3E-07 44.5 2.5 17 1-17 145-161 (374)
394 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.5 0.0088 1.9E-07 41.3 2.0 17 1-17 38-54 (218)
395 COG0465 HflB ATP-dependent Zn 95.5 0.0072 1.6E-07 47.7 1.7 29 1-29 191-221 (596)
396 cd03264 ABC_drug_resistance_li 95.5 0.0091 2E-07 41.0 2.0 17 1-17 33-49 (211)
397 TIGR00960 3a0501s02 Type II (G 95.5 0.009 1.9E-07 41.2 1.9 17 1-17 37-53 (216)
398 cd03114 ArgK-like The function 95.5 0.012 2.6E-07 38.3 2.4 17 1-17 7-23 (148)
399 PRK13768 GTPase; Provisional 95.5 0.011 2.4E-07 42.0 2.4 17 1-17 10-26 (253)
400 TIGR01618 phage_P_loop phage n 95.5 0.0068 1.5E-07 42.1 1.3 28 1-30 20-47 (220)
401 TIGR01166 cbiO cobalt transpor 95.5 0.0095 2.1E-07 40.2 2.0 17 1-17 26-42 (190)
402 cd01128 rho_factor Transcripti 95.5 0.01 2.3E-07 42.0 2.2 19 1-19 24-42 (249)
403 TIGR00764 lon_rel lon-related 95.4 0.069 1.5E-06 42.8 6.9 33 1-33 45-88 (608)
404 KOG0727|consensus 95.4 0.018 3.9E-07 41.0 3.2 35 1-35 197-233 (408)
405 KOG0991|consensus 95.4 0.012 2.6E-07 41.3 2.3 17 1-17 56-72 (333)
406 PRK14952 DNA polymerase III su 95.4 0.012 2.6E-07 46.7 2.5 20 1-20 43-62 (584)
407 PRK14493 putative bifunctional 95.4 0.013 2.8E-07 42.2 2.5 17 1-17 9-25 (274)
408 cd03263 ABC_subfamily_A The AB 95.4 0.01 2.3E-07 41.0 2.0 17 1-17 36-52 (220)
409 TIGR03499 FlhF flagellar biosy 95.4 0.013 2.8E-07 42.4 2.4 26 1-26 202-234 (282)
410 PF00005 ABC_tran: ABC transpo 95.4 0.009 2E-07 38.0 1.5 17 1-17 19-35 (137)
411 cd03225 ABC_cobalt_CbiO_domain 95.4 0.011 2.3E-07 40.6 2.0 17 1-17 35-51 (211)
412 PHA02624 large T antigen; Prov 95.4 0.014 3.1E-07 46.2 2.8 24 1-24 439-462 (647)
413 KOG0734|consensus 95.4 0.0091 2E-07 46.6 1.7 24 1-24 345-368 (752)
414 PRK04296 thymidine kinase; Pro 95.4 0.012 2.7E-07 39.9 2.2 17 1-17 10-26 (190)
415 cd03301 ABC_MalK_N The N-termi 95.4 0.011 2.4E-07 40.6 2.0 17 1-17 34-50 (213)
416 cd03269 ABC_putative_ATPase Th 95.4 0.011 2.4E-07 40.5 2.0 17 1-17 34-50 (210)
417 PF13604 AAA_30: AAA domain; P 95.3 0.014 3.1E-07 39.8 2.5 17 1-17 26-42 (196)
418 TIGR02673 FtsE cell division A 95.3 0.011 2.4E-07 40.7 2.0 17 1-17 36-52 (214)
419 PRK12422 chromosomal replicati 95.3 0.028 6E-07 43.3 4.3 31 1-31 149-184 (445)
420 cd03261 ABC_Org_Solvent_Resist 95.3 0.011 2.4E-07 41.3 2.0 17 1-17 34-50 (235)
421 COG0542 clpA ATP-binding subun 95.3 0.027 5.8E-07 46.0 4.2 32 1-32 529-565 (786)
422 PRK14974 cell division protein 95.3 0.014 3E-07 43.3 2.5 17 1-17 148-164 (336)
423 TIGR00750 lao LAO/AO transport 95.3 0.014 3E-07 42.5 2.5 17 1-17 42-58 (300)
424 cd03247 ABCC_cytochrome_bd The 95.3 0.012 2.5E-07 39.4 2.0 17 1-17 36-52 (178)
425 cd03258 ABC_MetN_methionine_tr 95.3 0.011 2.5E-07 41.2 2.0 17 1-17 39-55 (233)
426 COG1703 ArgK Putative periplas 95.3 0.014 3E-07 42.2 2.4 17 1-17 59-75 (323)
427 KOG1534|consensus 95.3 0.01 2.3E-07 40.9 1.7 17 1-17 11-27 (273)
428 cd03224 ABC_TM1139_LivF_branch 95.3 0.011 2.4E-07 40.9 1.9 17 1-17 34-50 (222)
429 cd03219 ABC_Mj1267_LivG_branch 95.3 0.01 2.3E-07 41.4 1.8 17 1-17 34-50 (236)
430 cd03229 ABC_Class3 This class 95.3 0.012 2.6E-07 39.4 2.0 17 1-17 34-50 (178)
431 TIGR02315 ABC_phnC phosphonate 95.3 0.012 2.5E-07 41.4 2.0 17 1-17 36-52 (243)
432 TIGR00602 rad24 checkpoint pro 95.3 0.0093 2E-07 47.7 1.6 21 1-21 118-138 (637)
433 PRK08691 DNA polymerase III su 95.3 0.014 3E-07 47.1 2.5 20 1-20 46-65 (709)
434 TIGR02782 TrbB_P P-type conjug 95.3 0.013 2.8E-07 42.7 2.2 27 1-27 140-171 (299)
435 TIGR03608 L_ocin_972_ABC putat 95.3 0.012 2.6E-07 40.2 2.0 17 1-17 32-48 (206)
436 COG1122 CbiO ABC-type cobalt t 95.3 0.011 2.4E-07 41.5 1.8 16 1-16 38-53 (235)
437 cd03256 ABC_PhnC_transporter A 95.3 0.012 2.6E-07 41.2 2.0 17 1-17 35-51 (241)
438 cd03296 ABC_CysA_sulfate_impor 95.3 0.012 2.6E-07 41.3 2.0 17 1-17 36-52 (239)
439 cd03223 ABCD_peroxisomal_ALDP 95.3 0.013 2.8E-07 38.9 2.0 17 1-17 35-51 (166)
440 PRK10865 protein disaggregatio 95.3 0.014 3.1E-07 48.4 2.6 17 1-17 207-223 (857)
441 cd03259 ABC_Carb_Solutes_like 95.3 0.012 2.7E-07 40.4 2.0 17 1-17 34-50 (213)
442 cd03226 ABC_cobalt_CbiO_domain 95.3 0.012 2.6E-07 40.2 1.9 17 1-17 34-50 (205)
443 PRK09361 radB DNA repair and r 95.3 0.016 3.4E-07 40.3 2.5 25 1-25 31-60 (225)
444 cd03262 ABC_HisP_GlnQ_permease 95.2 0.012 2.7E-07 40.3 2.0 17 1-17 34-50 (213)
445 PF08477 Miro: Miro-like prote 95.2 0.015 3.3E-07 35.8 2.2 17 1-17 7-23 (119)
446 PRK11629 lolD lipoprotein tran 95.2 0.013 2.7E-07 41.0 2.0 17 1-17 43-59 (233)
447 cd03293 ABC_NrtD_SsuB_transpor 95.2 0.013 2.7E-07 40.6 2.0 17 1-17 38-54 (220)
448 cd03260 ABC_PstB_phosphate_tra 95.2 0.013 2.8E-07 40.7 2.0 17 1-17 34-50 (227)
449 cd03230 ABC_DR_subfamily_A Thi 95.2 0.014 2.9E-07 38.9 2.0 17 1-17 34-50 (173)
450 PTZ00202 tuzin; Provisional 95.2 0.088 1.9E-06 40.6 6.4 33 1-33 294-331 (550)
451 TIGR02211 LolD_lipo_ex lipopro 95.2 0.013 2.9E-07 40.4 2.0 17 1-17 39-55 (221)
452 PRK09111 DNA polymerase III su 95.2 0.015 3.3E-07 46.3 2.5 20 1-20 54-73 (598)
453 PRK13541 cytochrome c biogenes 95.2 0.014 3E-07 39.6 2.0 17 1-17 34-50 (195)
454 COG2884 FtsE Predicted ATPase 95.2 0.015 3.3E-07 39.5 2.1 17 1-17 36-52 (223)
455 PRK14250 phosphate ABC transpo 95.2 0.013 2.9E-07 41.1 2.0 17 1-17 37-53 (241)
456 TIGR03410 urea_trans_UrtE urea 95.2 0.013 2.8E-07 40.8 1.9 17 1-17 34-50 (230)
457 PRK12323 DNA polymerase III su 95.2 0.017 3.7E-07 46.3 2.6 19 1-19 46-64 (700)
458 cd03235 ABC_Metallic_Cations A 95.1 0.012 2.6E-07 40.4 1.7 17 1-17 33-49 (213)
459 PRK00771 signal recognition pa 95.1 0.016 3.5E-07 44.4 2.5 17 1-17 103-119 (437)
460 cd03222 ABC_RNaseL_inhibitor T 95.1 0.013 2.8E-07 39.4 1.8 17 1-17 33-49 (177)
461 TIGR03864 PQQ_ABC_ATP ABC tran 95.1 0.014 3.1E-07 40.8 2.0 17 1-17 35-51 (236)
462 TIGR02928 orc1/cdc6 family rep 95.1 0.017 3.6E-07 43.1 2.5 17 1-17 48-64 (365)
463 cd03265 ABC_DrrA DrrA is the A 95.1 0.015 3.1E-07 40.3 2.0 17 1-17 34-50 (220)
464 cd03234 ABCG_White The White s 95.1 0.014 3.1E-07 40.5 2.0 17 1-17 41-57 (226)
465 PRK00411 cdc6 cell division co 95.1 0.017 3.8E-07 43.4 2.5 17 1-17 63-79 (394)
466 PRK15177 Vi polysaccharide exp 95.1 0.015 3.2E-07 40.2 2.0 16 1-16 21-36 (213)
467 COG1072 CoaA Panthothenate kin 95.1 0.017 3.7E-07 41.3 2.3 17 1-17 90-106 (283)
468 PRK00440 rfc replication facto 95.1 0.018 3.8E-07 42.0 2.5 17 1-17 46-62 (319)
469 PRK11124 artP arginine transpo 95.1 0.015 3.2E-07 40.9 2.0 17 1-17 36-52 (242)
470 cd02034 CooC The accessory pro 95.1 0.021 4.5E-07 35.6 2.5 17 1-17 7-23 (116)
471 PRK07940 DNA polymerase III su 95.1 0.019 4.1E-07 43.5 2.6 20 1-20 44-63 (394)
472 cd03228 ABCC_MRP_Like The MRP 95.1 0.016 3.4E-07 38.5 2.0 17 1-17 36-52 (171)
473 PF13481 AAA_25: AAA domain; P 95.1 0.02 4.3E-07 38.6 2.5 17 1-17 40-56 (193)
474 TIGR02323 CP_lyasePhnK phospho 95.1 0.015 3.2E-07 41.2 2.0 17 1-17 37-53 (253)
475 PRK07003 DNA polymerase III su 95.1 0.018 3.9E-07 46.9 2.6 20 1-20 46-65 (830)
476 cd03246 ABCC_Protease_Secretio 95.1 0.016 3.4E-07 38.6 2.0 17 1-17 36-52 (173)
477 cd03215 ABC_Carb_Monos_II This 95.1 0.015 3.2E-07 39.1 1.9 17 1-17 34-50 (182)
478 cd03218 ABC_YhbG The ABC trans 95.1 0.015 3.3E-07 40.5 2.0 17 1-17 34-50 (232)
479 TIGR02655 circ_KaiC circadian 95.1 0.058 1.3E-06 42.0 5.3 15 1-15 29-43 (484)
480 cd03251 ABCC_MsbA MsbA is an e 95.1 0.015 3.3E-07 40.6 2.0 17 1-17 36-52 (234)
481 COG3172 NadR Predicted ATPase/ 95.1 0.022 4.7E-07 37.6 2.5 30 1-32 16-45 (187)
482 PRK13764 ATPase; Provisional 95.1 0.017 3.6E-07 46.0 2.4 18 1-18 265-282 (602)
483 PRK11701 phnK phosphonate C-P 95.1 0.015 3.3E-07 41.3 2.0 17 1-17 40-56 (258)
484 cd03297 ABC_ModC_molybdenum_tr 95.0 0.015 3.4E-07 40.0 2.0 17 1-17 31-47 (214)
485 PRK14950 DNA polymerase III su 95.0 0.019 4.1E-07 45.7 2.7 20 1-20 46-65 (585)
486 PRK11264 putative amino-acid A 95.0 0.016 3.4E-07 40.9 2.0 17 1-17 37-53 (250)
487 cd03232 ABC_PDR_domain2 The pl 95.0 0.016 3.4E-07 39.3 2.0 15 1-15 41-55 (192)
488 KOG0741|consensus 95.0 0.019 4.2E-07 44.8 2.6 27 1-27 546-575 (744)
489 PRK10865 protein disaggregatio 95.0 0.025 5.5E-07 47.0 3.4 30 1-30 606-640 (857)
490 TIGR03878 thermo_KaiC_2 KaiC d 95.0 0.019 4E-07 41.0 2.4 25 1-25 44-73 (259)
491 cd03214 ABC_Iron-Siderophores_ 95.0 0.016 3.6E-07 38.8 2.0 17 1-17 33-49 (180)
492 PRK10744 pstB phosphate transp 95.0 0.016 3.4E-07 41.3 2.0 17 1-17 47-63 (260)
493 PRK10867 signal recognition pa 95.0 0.019 4E-07 44.0 2.5 25 1-25 108-138 (433)
494 PRK10247 putative ABC transpor 95.0 0.016 3.5E-07 40.3 2.0 17 1-17 41-57 (225)
495 TIGR01978 sufC FeS assembly AT 95.0 0.015 3.3E-07 40.7 1.9 16 1-16 34-49 (243)
496 cd03257 ABC_NikE_OppD_transpor 95.0 0.016 3.4E-07 40.3 1.9 17 1-17 39-55 (228)
497 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.0 0.015 3.3E-07 37.5 1.8 17 1-17 34-50 (144)
498 COG1117 PstB ABC-type phosphat 95.0 0.017 3.7E-07 40.0 2.0 17 1-17 41-57 (253)
499 TIGR02770 nickel_nikD nickel i 95.0 0.016 3.4E-07 40.5 1.9 17 1-17 20-36 (230)
500 PRK13540 cytochrome c biogenes 95.0 0.017 3.7E-07 39.4 2.0 17 1-17 35-51 (200)
No 1
>KOG3079|consensus
Probab=99.95 E-value=7.7e-27 Score=152.51 Aligned_cols=112 Identities=51% Similarity=0.924 Sum_probs=100.9
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhc-CCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNS-GSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDG 79 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg 79 (153)
+|||||.|+|..++++|++.|+|+++|+|++... +++.|..+.+++.+|..+|.+.+..++.+++.+.
T Consensus 16 GPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~~----------- 84 (195)
T KOG3079|consen 16 GPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRSS----------- 84 (195)
T ss_pred CCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHhc-----------
Confidence 6999999999999999999999999999999987 9999999999999999999999999998888754
Q ss_pred CccchhhhhhhhhhhhhHHHHHHHHhhcCCCCcceeecCCCCCchHHHHHHHHhC-CCCeEEEeecCcchhh-hc
Q psy11030 80 YPREKAQGEQFEREDVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQFEREIN-SPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 80 ~p~~~~q~~~~~~~~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~~~~~~~-~~~~vi~l~~~~~~~~-~l 152 (153)
..+++|++|||||...|+..|+..+. .|++|+++||+.|+++ ||
T Consensus 85 -----------------------------~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rl 130 (195)
T KOG3079|consen 85 -----------------------------GDSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRL 130 (195)
T ss_pred -----------------------------CCCCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHH
Confidence 22233778888999999999998887 7999999999999998 75
No 2
>PLN02674 adenylate kinase
Probab=99.94 E-value=1.4e-26 Score=160.82 Aligned_cols=113 Identities=32% Similarity=0.623 Sum_probs=96.5
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
||||||||+|+.|+++||+.|+|+++++|+++..+++.|..+.+++..|..+|++.+..++.+.+...
T Consensus 39 ~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~------------ 106 (244)
T PLN02674 39 PPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKP------------ 106 (244)
T ss_pred CCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCc------------
Confidence 79999999999999999999999999999999999999999999999999999999988888777543
Q ss_pred ccchhhhhhhhhhhhhHHHHHHHHhhcCCCCcceeecCCCCCchHHHHHHHHh----CCCCeEEEeecCcchhh-hcC
Q psy11030 81 PREKAQGEQFEREDVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQFEREI----NSPTGIVYFEVPDDVMT-ILS 153 (153)
Q Consensus 81 p~~~~q~~~~~~~~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~~~~~~----~~~~~vi~l~~~~~~~~-~l~ 153 (153)
....+|++|||||+..|++.|++.+ ..+|.||++++|+++++ ||.
T Consensus 107 ----------------------------~~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~ 156 (244)
T PLN02674 107 ----------------------------SCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERIT 156 (244)
T ss_pred ----------------------------CcCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHh
Confidence 1224566667777777777766543 46999999999999998 863
No 3
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=99.94 E-value=2.1e-26 Score=150.88 Aligned_cols=89 Identities=45% Similarity=0.869 Sum_probs=72.7
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
||||||||+|+.|+++||+.|+++++++++.+..+++.|..+.+++.+|..+|++.+.+++...+... ....+||||||
T Consensus 4 ~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~-~~~~g~ildGf 82 (151)
T PF00406_consen 4 PPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQP-PCNRGFILDGF 82 (151)
T ss_dssp STTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSG-GTTTEEEEESB
T ss_pred CCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhh-cccceeeeeec
Confidence 89999999999999999999999999999999999999999999999999999999999988888765 34455555555
Q ss_pred ccchhhhhhh
Q psy11030 81 PREKAQGEQF 90 (153)
Q Consensus 81 p~~~~q~~~~ 90 (153)
|++..|+..+
T Consensus 83 Prt~~Qa~~l 92 (151)
T PF00406_consen 83 PRTLEQAEAL 92 (151)
T ss_dssp -SSHHHHHHH
T ss_pred cccHHHHHHH
Confidence 5554444433
No 4
>PLN02459 probable adenylate kinase
Probab=99.94 E-value=2.5e-26 Score=160.35 Aligned_cols=114 Identities=32% Similarity=0.582 Sum_probs=100.1
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
||||||||+|+.|+++||+.|+++++++|+++..+++.|..+..++.+|..+|++.+..++.+.+....
T Consensus 37 ~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~~~----------- 105 (261)
T PLN02459 37 CPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGE----------- 105 (261)
T ss_pred CCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhccc-----------
Confidence 799999999999999999999999999999999999999999999999999999999999888876431
Q ss_pred ccchhhhhhhhhhhhhHHHHHHHHhhcCCCCcceeecCCCCCchHHHHHHHHhCCCCeEEEeecCcchhh-hcC
Q psy11030 81 PREKAQGEQFEREDVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQFEREINSPTGIVYFEVPDDVMT-ILS 153 (153)
Q Consensus 81 p~~~~q~~~~~~~~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~vi~l~~~~~~~~-~l~ 153 (153)
.....+|++|||||+..|++.|+.. ..+++||+|++|+++++ ||.
T Consensus 106 ---------------------------~~~~~g~iLDGFPRt~~Qa~~Le~~-~~id~Vi~L~v~d~~l~~Rl~ 151 (261)
T PLN02459 106 ---------------------------EEGESGFILDGFPRTVRQAEILEGV-TDIDLVVNLKLREEVLVEKCL 151 (261)
T ss_pred ---------------------------ccCCceEEEeCCCCCHHHHHHHHhc-CCCCEEEEEECCHHHHHHHhh
Confidence 1234567778888888888888765 47899999999999999 873
No 5
>PRK14529 adenylate kinase; Provisional
Probab=99.93 E-value=1.8e-25 Score=153.63 Aligned_cols=108 Identities=29% Similarity=0.547 Sum_probs=99.8
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
||||||||+|+.|+++|++.|+|+++++++.+..+++.|..+.+++.+|..+|++.+..++.+++.+.. ..+||||||
T Consensus 8 ~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~--~~g~iLDGf 85 (223)
T PRK14529 8 PNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDG--KNGWLLDGF 85 (223)
T ss_pred CCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccC--CCcEEEeCC
Confidence 799999999999999999999999999999998899999999999999999999999999999998763 789999999
Q ss_pred ccchhhhhhhhhh--------------hhhHHHHHHHHhhcCCC
Q psy11030 81 PREKAQGEQFERE--------------DVVMELLGEKVLKELPN 110 (153)
Q Consensus 81 p~~~~q~~~~~~~--------------~~~~~~l~~Rl~~R~~~ 110 (153)
|++..|++.+... ++|++++.+|+..|+.+
T Consensus 86 PRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c 129 (223)
T PRK14529 86 PRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLC 129 (223)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCccc
Confidence 9999999876532 99999999999999744
No 6
>PRK13808 adenylate kinase; Provisional
Probab=99.92 E-value=1.3e-24 Score=156.52 Aligned_cols=112 Identities=33% Similarity=0.682 Sum_probs=91.9
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
||||||||+|+.|++.||+.|++++++++..+..+++.|..+..++..|..+|++.+..++.+.+... ....+||||
T Consensus 8 pPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~-~~~~G~ILD-- 84 (333)
T PRK13808 8 PPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQP-DAANGFILD-- 84 (333)
T ss_pred CCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcc-cccCCEEEe--
Confidence 79999999999999999999999999999999889999999999999999999999988888887654 223455554
Q ss_pred ccchhhhhhhhhhhhhHHHHHHHHhhcCCCCcceeecCCCCCchHHHHHHHHh----CCCCeEEEeecCcchhh-hc
Q psy11030 81 PREKAQGEQFEREDVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQFEREI----NSPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 81 p~~~~q~~~~~~~~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~~~~~~----~~~~~vi~l~~~~~~~~-~l 152 (153)
||||+..|++.|++.+ ..||+||+|++|+++++ ||
T Consensus 85 -------------------------------------GFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl 124 (333)
T PRK13808 85 -------------------------------------GFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARV 124 (333)
T ss_pred -------------------------------------CCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHH
Confidence 5555555555544322 47999999999999988 76
No 7
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=99.92 E-value=3.6e-24 Score=147.32 Aligned_cols=113 Identities=39% Similarity=0.748 Sum_probs=95.6
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
||||||||+|+.|+++||+.|+++++++++.+...++.|..+..++..|..+|++.+..++.+.+.+...
T Consensus 7 ~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~---------- 76 (210)
T TIGR01351 7 PPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQD---------- 76 (210)
T ss_pred CCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcc----------
Confidence 7999999999999999999999999999999988888999999999999999999988888888765321
Q ss_pred ccchhhhhhhhhhhhhHHHHHHHHhhcCCCCcceeecCCCCCchHHHHHHHHhC-CCCeEEEeecCcchhh-hc
Q psy11030 81 PREKAQGEQFEREDVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQFEREIN-SPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 81 p~~~~q~~~~~~~~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~~~~~~~-~~~~vi~l~~~~~~~~-~l 152 (153)
...+|++||||++..|++.+++... .+++||++++|+++++ |+
T Consensus 77 -----------------------------~~~~~ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl 121 (210)
T TIGR01351 77 -----------------------------NENGFILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERL 121 (210)
T ss_pred -----------------------------cCCcEEEeCCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHH
Confidence 2334566666777777777777665 7999999999999988 76
No 8
>PTZ00088 adenylate kinase 1; Provisional
Probab=99.91 E-value=8.2e-24 Score=146.51 Aligned_cols=109 Identities=31% Similarity=0.558 Sum_probs=99.3
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhh-CCCCCcEeecC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKE-LPNSKGYLIDG 79 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~ildg 79 (153)
||||||||+|+.|+++||++|+++|+++++.+..+++.|..+..++.+|..+|++.+..++.+.+.+. .....+||+||
T Consensus 14 ~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~~~~g~iLDG 93 (229)
T PTZ00088 14 APGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTDDCFKGFILDG 93 (229)
T ss_pred CCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhccccCceEEEec
Confidence 79999999999999999999999999999999888899999999999999999999999999999874 24567999999
Q ss_pred Cccchhhhhhhhhh---------hhhHHHHHHHHhhcCC
Q psy11030 80 YPREKAQGEQFERE---------DVVMELLGEKVLKELP 109 (153)
Q Consensus 80 ~p~~~~q~~~~~~~---------~~~~~~l~~Rl~~R~~ 109 (153)
||++..|+..+... ++|.+++.+|+..|+.
T Consensus 94 fPRt~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~Rr~ 132 (229)
T PTZ00088 94 FPRNLKQCKELGKITNIDLFVNIYLPRNILIKKLLGRRI 132 (229)
T ss_pred CCCCHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHcCcC
Confidence 99999999876543 8999999999999863
No 9
>PRK14526 adenylate kinase; Provisional
Probab=99.91 E-value=1.2e-23 Score=144.15 Aligned_cols=109 Identities=29% Similarity=0.560 Sum_probs=99.4
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
||||||||+|+.|++.+++.|+++++++++.+..+++.|..+..++..|..+|++.+..++.+.+... ....+||||||
T Consensus 8 ~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~-~~~~g~ilDGf 86 (211)
T PRK14526 8 PPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTI-KNNDNFILDGF 86 (211)
T ss_pred CCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcc-cccCcEEEECC
Confidence 79999999999999999999999999999999888999999999999999999999999999999865 34679999999
Q ss_pred ccchhhhhhhhhh---------hhhHHHHHHHHhhcCCC
Q psy11030 81 PREKAQGEQFERE---------DVVMELLGEKVLKELPN 110 (153)
Q Consensus 81 p~~~~q~~~~~~~---------~~~~~~l~~Rl~~R~~~ 110 (153)
|++..|+..+... .+|++++.+|+..|..+
T Consensus 87 PR~~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~ 125 (211)
T PRK14526 87 PRNINQAKALDKFLPNIKIINFLIDEELLIKRLSGRRIC 125 (211)
T ss_pred CCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHCCCcc
Confidence 9999999887543 78999999999998744
No 10
>PRK14532 adenylate kinase; Provisional
Probab=99.91 E-value=1.7e-23 Score=141.65 Aligned_cols=108 Identities=37% Similarity=0.654 Sum_probs=96.8
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
||||||||+|+.|++++|+.|+++++++++.+..+++.|..+..++..|..+|++.+..++.+.+... ....+||+|||
T Consensus 8 ~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~vldg~ 86 (188)
T PRK14532 8 PPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEA-EAAGGAIFDGF 86 (188)
T ss_pred CCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCc-CccCcEEEeCC
Confidence 79999999999999999999999999999999888889999999999999999999999998888665 45689999999
Q ss_pred ccchhhhhhhhhh--------------hhhHHHHHHHHhhcCC
Q psy11030 81 PREKAQGEQFERE--------------DVVMELLGEKVLKELP 109 (153)
Q Consensus 81 p~~~~q~~~~~~~--------------~~~~~~l~~Rl~~R~~ 109 (153)
|++..|++.+... ++|++++.+|+..|..
T Consensus 87 pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~ 129 (188)
T PRK14532 87 PRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFE 129 (188)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcC
Confidence 9999998765421 8999999999998853
No 11
>PRK14531 adenylate kinase; Provisional
Probab=99.90 E-value=2.4e-23 Score=140.39 Aligned_cols=106 Identities=42% Similarity=0.661 Sum_probs=95.1
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
||||||||+|+.|+++||+.|+++++++++.+..+++.|..+..++..|..+|++.+..++.+.+... ...+||||||
T Consensus 10 ~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~--~~~g~ilDGf 87 (183)
T PRK14531 10 PPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKAL--NSGGWLLDGF 87 (183)
T ss_pred CCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhc--cCCcEEEeCC
Confidence 79999999999999999999999999999999888899999999999999999999999888888653 3578999999
Q ss_pred ccchhhhhhhhhh--------------hhhHHHHHHHHhhcC
Q psy11030 81 PREKAQGEQFERE--------------DVVMELLGEKVLKEL 108 (153)
Q Consensus 81 p~~~~q~~~~~~~--------------~~~~~~l~~Rl~~R~ 108 (153)
|++..|+..+... +||++++.+|+..|.
T Consensus 88 pr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~ 129 (183)
T PRK14531 88 PRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARG 129 (183)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCC
Confidence 9999998765431 899999999999884
No 12
>PRK14528 adenylate kinase; Provisional
Probab=99.90 E-value=4.4e-23 Score=139.34 Aligned_cols=113 Identities=34% Similarity=0.609 Sum_probs=92.1
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
||||||||+|+.|+++||++|++++++++..+..+++.|..+..++..|..+|++.+..++.+.+.+.. ...
T Consensus 9 ~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~-~~~------- 80 (186)
T PRK14528 9 PPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREAD-CKN------- 80 (186)
T ss_pred CCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcC-ccC-------
Confidence 799999999999999999999999999999998888999989999999999999988777777765431 123
Q ss_pred ccchhhhhhhhhhhhhHHHHHHHHhhcCCCCcceeecCCCCCchHHHHHHHHh----CCCCeEEEeecCcchhh-hcC
Q psy11030 81 PREKAQGEQFEREDVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQFEREI----NSPTGIVYFEVPDDVMT-ILS 153 (153)
Q Consensus 81 p~~~~q~~~~~~~~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~~~~~~----~~~~~vi~l~~~~~~~~-~l~ 153 (153)
+|++||||++..|++.+++.+ ..+|+||+|++|+++++ ||+
T Consensus 81 --------------------------------g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~ 126 (186)
T PRK14528 81 --------------------------------GFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLL 126 (186)
T ss_pred --------------------------------cEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHh
Confidence 455556666666666655433 47999999999999998 863
No 13
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.90 E-value=6.3e-23 Score=138.29 Aligned_cols=108 Identities=43% Similarity=0.758 Sum_probs=95.4
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
||||||||+|+.|++++|+.|+++++++++.+..+++.|..+..++.+|..+|++.+..++.+.+.... ..+||+|||
T Consensus 7 ~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~--~~~~vlDg~ 84 (183)
T TIGR01359 7 GPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADG--SKKFLIDGF 84 (183)
T ss_pred CCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccC--CCcEEEeCC
Confidence 799999999999999999999999999999998778888889999999999999999998888876642 679999999
Q ss_pred ccchhhhhhhhhh-------------hhhHHHHHHHHhhcCCC
Q psy11030 81 PREKAQGEQFERE-------------DVVMELLGEKVLKELPN 110 (153)
Q Consensus 81 p~~~~q~~~~~~~-------------~~~~~~l~~Rl~~R~~~ 110 (153)
|++..|+..+... ++|++++.+|+..|...
T Consensus 85 p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~ 127 (183)
T TIGR01359 85 PRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQS 127 (183)
T ss_pred CCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCcc
Confidence 9999888654321 89999999999998643
No 14
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.89 E-value=2.2e-22 Score=134.42 Aligned_cols=107 Identities=35% Similarity=0.616 Sum_probs=98.0
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
||||||||+|+.|+++++++|+|++++++......++.|..+..++..|..+|++.+...+...+....+.. ++|+|||
T Consensus 8 ~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~-~~I~dg~ 86 (178)
T COG0563 8 PPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKA-GFILDGF 86 (178)
T ss_pred CCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccC-eEEEeCC
Confidence 799999999999999999999999999999999999999999999999999999999999999998874334 8999999
Q ss_pred ccchhhhhhhhhh--------------hhhHHHHHHHHhhcC
Q psy11030 81 PREKAQGEQFERE--------------DVVMELLGEKVLKEL 108 (153)
Q Consensus 81 p~~~~q~~~~~~~--------------~~~~~~l~~Rl~~R~ 108 (153)
|++..|++.++.. .++.+.+..|+..|.
T Consensus 87 PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~ 128 (178)
T COG0563 87 PRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRR 128 (178)
T ss_pred CCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCcc
Confidence 9999999887743 788899999999884
No 15
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.89 E-value=2.1e-22 Score=139.05 Aligned_cols=108 Identities=40% Similarity=0.661 Sum_probs=96.9
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
||||||||+|+.|+++||+.|+++++++++.+..+++.|..+..++..|..+|++.+..++.+.+... ....+||||||
T Consensus 8 ~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~-~~~~g~VlDGf 86 (215)
T PRK00279 8 PPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQP-DCKNGFLLDGF 86 (215)
T ss_pred CCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcc-CccCCEEEecC
Confidence 79999999999999999999999999999999888899999999999999999999999999998765 23459999999
Q ss_pred ccchhhhhhhhhh--------------hhhHHHHHHHHhhcCC
Q psy11030 81 PREKAQGEQFERE--------------DVVMELLGEKVLKELP 109 (153)
Q Consensus 81 p~~~~q~~~~~~~--------------~~~~~~l~~Rl~~R~~ 109 (153)
|++..|+..+... +||++++.+|+..|..
T Consensus 87 Pr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~ 129 (215)
T PRK00279 87 PRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRI 129 (215)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcc
Confidence 9999998777321 9999999999999864
No 16
>PLN02842 nucleotide kinase
Probab=99.88 E-value=5.3e-22 Score=149.34 Aligned_cols=113 Identities=41% Similarity=0.723 Sum_probs=95.5
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
||||||||+|+.|+++|++.|++++++++..+..+++.|..+.+++.+|..+|++.+..++.+++....
T Consensus 5 ~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~----------- 73 (505)
T PLN02842 5 APASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSRED----------- 73 (505)
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCcc-----------
Confidence 799999999999999999999999999999998899999999999999999999988888777665421
Q ss_pred ccchhhhhhhhhhhhhHHHHHHHHhhcCCCCcceeecCCCCCchHHHHHHHHhCCCCeEEEeecCcchhh-hc
Q psy11030 81 PREKAQGEQFEREDVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQFEREINSPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 81 p~~~~q~~~~~~~~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~vi~l~~~~~~~~-~l 152 (153)
..+.+|++||||++..|++.++.....||+||+||+|+++++ ||
T Consensus 74 ----------------------------~~~~G~ILDGfPRt~~Qa~~Le~~~~~PDlVI~LDvpdevlleRl 118 (505)
T PLN02842 74 ----------------------------AKEKGWLLDGYPRSFAQAQSLEKLKIRPDIFILLDVPDEILIDRC 118 (505)
T ss_pred ----------------------------ccCCcEEEeCCCCcHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHH
Confidence 123346666777777777777765668999999999999988 75
No 17
>PLN02200 adenylate kinase family protein
Probab=99.88 E-value=1.1e-21 Score=136.63 Aligned_cols=107 Identities=41% Similarity=0.739 Sum_probs=94.7
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
||||||||+|+.|++++|+.|+++++++++.+...++.+..+..++..|..+|++.+..++.+.+... ...+||||||
T Consensus 51 ~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~--~~~~~ILDG~ 128 (234)
T PLN02200 51 GPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESS--DNNKFLIDGF 128 (234)
T ss_pred CCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC--CCCeEEecCC
Confidence 79999999999999999999999999999999888888888899999999999999989888888653 3468999999
Q ss_pred ccchhhhhhhhhh-----------hhhHHHHHHHHhhcCC
Q psy11030 81 PREKAQGEQFERE-----------DVVMELLGEKVLKELP 109 (153)
Q Consensus 81 p~~~~q~~~~~~~-----------~~~~~~l~~Rl~~R~~ 109 (153)
|++..|+..+... ++|++++.+|+.+|..
T Consensus 129 Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~ 168 (234)
T PLN02200 129 PRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQ 168 (234)
T ss_pred cccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcC
Confidence 9999998765432 8999999999998853
No 18
>PRK02496 adk adenylate kinase; Provisional
Probab=99.87 E-value=1.4e-21 Score=131.92 Aligned_cols=107 Identities=32% Similarity=0.586 Sum_probs=95.5
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
||||||||+|+.|+++||+.|+++++++++.+..+++.|..+..++..|..+|++.+..++.+.+.+. ....+||+|||
T Consensus 9 ~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~-~~~~g~vldGf 87 (184)
T PRK02496 9 PPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQP-DAANGWILDGF 87 (184)
T ss_pred CCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCc-CccCCEEEeCC
Confidence 79999999999999999999999999999999888888988999999999999999999999988765 33579999999
Q ss_pred ccchhhhhhhhhh--------------hhhHHHHHHHHhhcC
Q psy11030 81 PREKAQGEQFERE--------------DVVMELLGEKVLKEL 108 (153)
Q Consensus 81 p~~~~q~~~~~~~--------------~~~~~~l~~Rl~~R~ 108 (153)
|++..|+..+... ++|.+++.+|+..|.
T Consensus 88 Pr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~ 129 (184)
T PRK02496 88 PRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARG 129 (184)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCC
Confidence 9999998665421 899999999999884
No 19
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=99.86 E-value=3.9e-21 Score=130.60 Aligned_cols=109 Identities=45% Similarity=0.733 Sum_probs=96.6
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
||||||||+|+.|+++||+.|+++++++++.+...++.+..+..++..|..++++.+..++...+.... ...+||+|||
T Consensus 7 ~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~-~~~~~vldg~ 85 (194)
T cd01428 7 PPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPD-CKKGFILDGF 85 (194)
T ss_pred CCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhccc-ccCCEEEeCC
Confidence 799999999999999999999999999999998888888899999999999999999999998887652 4679999999
Q ss_pred ccchhhhhhhhhh-------------hhhHHHHHHHHhhcCCC
Q psy11030 81 PREKAQGEQFERE-------------DVVMELLGEKVLKELPN 110 (153)
Q Consensus 81 p~~~~q~~~~~~~-------------~~~~~~l~~Rl~~R~~~ 110 (153)
|++..|+..+... ++|++++.+|+.+|..+
T Consensus 86 Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~ 128 (194)
T cd01428 86 PRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRIC 128 (194)
T ss_pred CCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcC
Confidence 9999988765432 89999999999998643
No 20
>PRK14527 adenylate kinase; Provisional
Probab=99.86 E-value=7.7e-21 Score=129.00 Aligned_cols=108 Identities=33% Similarity=0.601 Sum_probs=94.8
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
||||||||+|+.|++++|+.++++++++++....+++.+..+..++..|..+|++.+..++.+.+.... ..+||+|||
T Consensus 14 ~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~--~~~~VlDGf 91 (191)
T PRK14527 14 PPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGME--PVRVIFDGF 91 (191)
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC--CCcEEEcCC
Confidence 799999999999999999999999999999988888888888888999999999999999888887642 357999999
Q ss_pred ccchhhhhhhhhh--------------hhhHHHHHHHHhhcCCC
Q psy11030 81 PREKAQGEQFERE--------------DVVMELLGEKVLKELPN 110 (153)
Q Consensus 81 p~~~~q~~~~~~~--------------~~~~~~l~~Rl~~R~~~ 110 (153)
|++..|+..+... +||.+++.+|+.+|...
T Consensus 92 pr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~ 135 (191)
T PRK14527 92 PRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQ 135 (191)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCccc
Confidence 9999998655421 89999999999998643
No 21
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.85 E-value=3.3e-20 Score=125.38 Aligned_cols=107 Identities=58% Similarity=0.972 Sum_probs=82.4
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
||||||||+|+.|++++|+.++++++++++.+...++.+..+...+..+...|...+...+...+......+.+||+||+
T Consensus 11 ~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~dg~ 90 (188)
T TIGR01360 11 GPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALGTSKGFLIDGY 90 (188)
T ss_pred CCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccCcCCeEEEeCC
Confidence 79999999999999999999999999999987766777777888888888889888777777777654445667777777
Q ss_pred ccchhhhhhhhhh----------hhhHHHHHHHHhhc
Q psy11030 81 PREKAQGEQFERE----------DVVMELLGEKVLKE 107 (153)
Q Consensus 81 p~~~~q~~~~~~~----------~~~~~~l~~Rl~~R 107 (153)
|++..|+..+... ++|.+++.+|+..|
T Consensus 91 ~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R 127 (188)
T TIGR01360 91 PREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKR 127 (188)
T ss_pred CCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcc
Confidence 7766555443221 66666666666655
No 22
>KOG3078|consensus
Probab=99.84 E-value=1.3e-20 Score=128.77 Aligned_cols=112 Identities=38% Similarity=0.721 Sum_probs=97.7
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
||||||+|+|..+++.|++.|+++++++|+.+..+++.|..+..++..|..+|++.+..++...+...
T Consensus 23 ~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~------------ 90 (235)
T KOG3078|consen 23 APGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENP------------ 90 (235)
T ss_pred CCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhcccc------------
Confidence 79999999999999999999999999999999999999999999999999999998887433333321
Q ss_pred ccchhhhhhhhhhhhhHHHHHHHHhhcCCCCcceeecCCCCCchHHHHHHHHhCCCCeEEEeecCcchhh-hc
Q psy11030 81 PREKAQGEQFEREDVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQFEREINSPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 81 p~~~~q~~~~~~~~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~vi~l~~~~~~~~-~l 152 (153)
....+|++|||||+..|++.+......+|.||.+++|++.++ |+
T Consensus 91 ----------------------------~~~~~~ildg~Prt~~qa~~l~~~~~~~d~Vi~l~vp~~~L~~ri 135 (235)
T KOG3078|consen 91 ----------------------------RCQKGFILDGFPRTVQQAEELLDRIAQIDLVINLKVPEEVLVDRI 135 (235)
T ss_pred ----------------------------ccccccccCCCCcchHHHHHHHHccCCcceEEEecCCHHHHHHHH
Confidence 344567788888998888888777889999999999999998 76
No 23
>PRK14530 adenylate kinase; Provisional
Probab=99.83 E-value=5.1e-20 Score=127.14 Aligned_cols=105 Identities=33% Similarity=0.572 Sum_probs=87.0
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHh-----cCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcE
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVN-----SGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGY 75 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 75 (153)
||||||||+|+.|+++||+.|+++++++++... ..+..+. ...++..|..+|++....++...+.. ..+|
T Consensus 11 ~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~~~~~~l~~~l~~----~~~~ 85 (215)
T PRK14530 11 APGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDT-PGEYMDAGELVPDAVVNEIVEEALSD----ADGF 85 (215)
T ss_pred CCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHH-HHHHHHcCCCCCHHHHHHHHHHHHhc----CCCE
Confidence 799999999999999999999999999999762 2334443 56678899999999888887777643 3689
Q ss_pred eecCCccchhhhhhhhhh---------hhhHHHHHHHHhhcCCC
Q psy11030 76 LIDGYPREKAQGEQFERE---------DVVMELLGEKVLKELPN 110 (153)
Q Consensus 76 ildg~p~~~~q~~~~~~~---------~~~~~~l~~Rl~~R~~~ 110 (153)
|+||||++..|++.+... ++|.+++.+|+..|..+
T Consensus 86 IldG~pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l~~Rl~~R~~~ 129 (215)
T PRK14530 86 VLDGYPRNLEQAEYLESITDLDVVLYLDVSEEELVDRLTGRRVC 129 (215)
T ss_pred EEcCCCCCHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHhCCCcC
Confidence 999999999998776432 99999999999988643
No 24
>PRK01184 hypothetical protein; Provisional
Probab=99.68 E-value=7.5e-16 Score=103.93 Aligned_cols=138 Identities=24% Similarity=0.287 Sum_probs=85.7
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhc-CCc-----chhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCc
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNS-GSA-----RGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKG 74 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~-~~~-----~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 74 (153)
||||||||+|+ +++++|++++++++++++.+.. +.+ .|........ .+....+...+...+.. .....
T Consensus 9 ~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~i~~--~~~~~ 82 (184)
T PRK01184 9 MPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRK---ELGMDAVAKRTVPKIRE--KGDEV 82 (184)
T ss_pred CCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHH---HHChHHHHHHHHHHHHh--cCCCc
Confidence 79999999997 7888999999999999998743 221 2333332221 12223333444444443 23578
Q ss_pred EeecCCccchhhhhhhhhh----------hhhHHHHHHHHhhcCCCCcceeecCCCCCchHHHH-------HHHHhCCCC
Q psy11030 75 YLIDGYPREKAQGEQFERE----------DVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQ-------FEREINSPT 137 (153)
Q Consensus 75 ~ildg~p~~~~q~~~~~~~----------~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~-------~~~~~~~~~ 137 (153)
+|+||+ +...+.+.+... .||.+++.+|+..|..... +........+. ..+....+|
T Consensus 83 vvidg~-r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d-----~~~~~~~~~r~~~q~~~~~~~~~~~ad 156 (184)
T PRK01184 83 VVIDGV-RGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSDD-----PKSWEELEERDERELSWGIGEVIALAD 156 (184)
T ss_pred EEEeCC-CCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCCC-----hhhHHHHHHHHHHHhccCHHHHHHhcC
Confidence 999999 566665433221 8999999999998753211 11111111110 223445789
Q ss_pred eEEEeecCcchhh
Q psy11030 138 GIVYFEVPDDVMT 150 (153)
Q Consensus 138 ~vi~l~~~~~~~~ 150 (153)
.+|.++.+.+.+.
T Consensus 157 ~vI~N~~~~~~l~ 169 (184)
T PRK01184 157 YMIVNDSTLEEFR 169 (184)
T ss_pred EEEeCCCCHHHHH
Confidence 9999998877765
No 25
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.63 E-value=1.5e-15 Score=103.31 Aligned_cols=141 Identities=16% Similarity=0.157 Sum_probs=89.4
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCC------CCCH------------------HH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGG------LVST------------------DV 56 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~------~~~~------------------~~ 56 (153)
||||||||+|+.|++.+|++++++|++.++.+..+.+.+..+.+.+..+. .+.. +.
T Consensus 9 ~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~~~~l~~i 88 (195)
T PRK14730 9 GIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEERRWLENL 88 (195)
T ss_pred CCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHHHHHHHHH
Confidence 68999999999999988999999999999999888777777776664322 1221 12
Q ss_pred HHHHHHHHHhhhCC--CCCcEeecCCccchhhh--hhhhhh---hhhHHHHHHHHhhcCCCCcceeecCCCCCchHHHH-
Q psy11030 57 VMELLGEKVLKELP--NSKGYLIDGYPREKAQG--EQFERE---DVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQ- 128 (153)
Q Consensus 57 ~~~~l~~~~~~~~~--~~~~~ildg~p~~~~q~--~~~~~~---~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~- 128 (153)
++..+...+..... ....+++=..|...+.. ..++.. .||.+++.+|+++|+ |+.+.....+.
T Consensus 89 ~hP~i~~~~~~~~~~~~~~~~vv~e~pll~E~~~~~~~D~ii~V~a~~e~r~~Rl~~R~---------g~s~e~~~~ri~ 159 (195)
T PRK14730 89 IHPYVRERFEEELAQLKSNPIVVLVIPLLFEAKLTDLCSEIWVVDCSPEQQLQRLIKRD---------GLTEEEAEARIN 159 (195)
T ss_pred HhHHHHHHHHHHHHhcCCCCEEEEEeHHhcCcchHhCCCEEEEEECCHHHHHHHHHHcC---------CCCHHHHHHHHH
Confidence 22333333332111 12234433334332221 223322 999999999999985 44443333222
Q ss_pred ----HHHHhCCCCeEEEeecCcchhh
Q psy11030 129 ----FEREINSPTGIVYFEVPDDVMT 150 (153)
Q Consensus 129 ----~~~~~~~~~~vi~l~~~~~~~~ 150 (153)
.++....+|+||.++.+.+.+.
T Consensus 160 ~Q~~~~~k~~~aD~vI~N~g~~e~l~ 185 (195)
T PRK14730 160 AQWPLEEKVKLADVVLDNSGDLEKLY 185 (195)
T ss_pred hCCCHHHHHhhCCEEEECCCCHHHHH
Confidence 2344568999999999987764
No 26
>PRK08356 hypothetical protein; Provisional
Probab=99.61 E-value=9.6e-16 Score=104.36 Aligned_cols=139 Identities=17% Similarity=0.179 Sum_probs=87.2
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcC----C---cchhH----HHHHHHcCCCCCH----HHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSG----S---ARGAD----LSKVMKDGGLVST----DVVMELLGEKV 65 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~----~---~~g~~----~~~~~~~~~~~~~----~~~~~~l~~~~ 65 (153)
||||||||+|+.|+ ++|+.++++++.+++..... + ..+.. ...++..|..+++ +.+.+++.+.+
T Consensus 13 ~~gsGK~t~a~~l~-~~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~~~~~~~~~~ 91 (195)
T PRK08356 13 KIAAGKTTVAKFFE-EKGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDILIRLAVDKK 91 (195)
T ss_pred CCCCCHHHHHHHHH-HCCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 79999999999996 58999999998765533221 1 11111 1233444444443 45555555555
Q ss_pred hhhCCCCCcEeecCCccchhhhhhhhhh-------hhhHHHHHHHHhhcCCCCcceeecCCCCCchHHHHH---------
Q psy11030 66 LKELPNSKGYLIDGYPREKAQGEQFERE-------DVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQF--------- 129 (153)
Q Consensus 66 ~~~~~~~~~~ildg~p~~~~q~~~~~~~-------~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~~--------- 129 (153)
.. ...+++||+ ++..|++.+... .+|.+++.+|+..|....... ..+..+++.+
T Consensus 92 ~~----~~~ividG~-r~~~q~~~l~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~~-----~~~~e~~~~~~~~~~~l~~ 161 (195)
T PRK08356 92 RN----CKNIAIDGV-RSRGEVEAIKRMGGKVIYVEAKPEIRFERLRRRGAEKDKG-----IKSFEDFLKFDEWEEKLYH 161 (195)
T ss_pred cc----CCeEEEcCc-CCHHHHHHHHhcCCEEEEEECCHHHHHHHHHhcCCccccc-----cccHHHHHHHHHHHHHhhh
Confidence 22 236999999 999998766442 899999999999886443211 1122222221
Q ss_pred -HHHhCCCCeEEEeecCcchhh
Q psy11030 130 -EREINSPTGIVYFEVPDDVMT 150 (153)
Q Consensus 130 -~~~~~~~~~vi~l~~~~~~~~ 150 (153)
.+....+|++|.++.+.+.+.
T Consensus 162 ~~~~~~~aD~vI~N~~~~e~~~ 183 (195)
T PRK08356 162 TTKLKDKADFVIVNEGTLEELR 183 (195)
T ss_pred hhhHHHhCcEEEECCCCHHHHH
Confidence 112346999998877777664
No 27
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.55 E-value=2.9e-14 Score=95.82 Aligned_cols=137 Identities=18% Similarity=0.225 Sum_probs=86.6
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCC-----CCC------------------HHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGG-----LVS------------------TDVV 57 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~-----~~~------------------~~~~ 57 (153)
+|||||||+++.|++ +|++++++|++.++.+..+...+..+.+.+..+. .+. ...+
T Consensus 7 ~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~~l~~i~ 85 (179)
T cd02022 7 GIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRKKLEAIT 85 (179)
T ss_pred CCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHHHHHHHH
Confidence 689999999999998 9999999999999998877666666666553321 121 1233
Q ss_pred HHHHHHHHhhhCC--CCCcEeecCCccchhhh--hhhhhh---hhhHHHHHHHHhhcCCCCcceeecCCCCCchHHHH--
Q psy11030 58 MELLGEKVLKELP--NSKGYLIDGYPREKAQG--EQFERE---DVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQ-- 128 (153)
Q Consensus 58 ~~~l~~~~~~~~~--~~~~~ildg~p~~~~q~--~~~~~~---~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~-- 128 (153)
...+...+..... ....+++-..|...+.. ..++.. .||.+++.+|++.|+ |+++...+.+.
T Consensus 86 hp~i~~~~~~~~~~~~~~~~vive~plL~e~~~~~~~D~vv~V~a~~~~ri~Rl~~Rd---------~~s~~~~~~r~~~ 156 (179)
T cd02022 86 HPLIRKEIEEQLAEARKEKVVVLDIPLLFETGLEKLVDRVIVVDAPPEIQIERLMKRD---------GLSEEEAEARIAS 156 (179)
T ss_pred HHHHHHHHHHHHHHccCCCEEEEEehHhhcCCcHHhCCeEEEEECCHHHHHHHHHHcC---------CCCHHHHHHHHHh
Confidence 3333334332211 12245544455443322 233333 999999999999985 45444433333
Q ss_pred ---HHHHhCCCCeEEEeecCcc
Q psy11030 129 ---FEREINSPTGIVYFEVPDD 147 (153)
Q Consensus 129 ---~~~~~~~~~~vi~l~~~~~ 147 (153)
.++....+|+||.++.+.+
T Consensus 157 Q~~~~~~~~~aD~vI~N~~~~~ 178 (179)
T cd02022 157 QMPLEEKRARADFVIDNSGSLE 178 (179)
T ss_pred cCCHHHHHHhCCEEEECcCCCC
Confidence 1234457999999998754
No 28
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.55 E-value=2.8e-14 Score=97.06 Aligned_cols=140 Identities=20% Similarity=0.261 Sum_probs=86.1
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCC-----CCCH------------------HHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGG-----LVST------------------DVV 57 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~-----~~~~------------------~~~ 57 (153)
++||||||+++.|++ +|++++++|.++++.+..+.+....+.+.+..+. .+.. ..+
T Consensus 10 ~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~~L~~i~ 88 (194)
T PRK00081 10 GIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEARKKLEAIL 88 (194)
T ss_pred CCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHHHHHHHHHH
Confidence 689999999999988 9999999999999998776666666665553321 2222 222
Q ss_pred HHHHHHHHhhhCCC--CCcEeecCCccchhhh--hhhhhh---hhhHHHHHHHHhhcCCCCcceeecCCCCCchHHHH--
Q psy11030 58 MELLGEKVLKELPN--SKGYLIDGYPREKAQG--EQFERE---DVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQ-- 128 (153)
Q Consensus 58 ~~~l~~~~~~~~~~--~~~~ildg~p~~~~q~--~~~~~~---~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~-- 128 (153)
+..+...+...... ...+++=..|...+.. ..++.. .||++++.+|+++|+ |++......+.
T Consensus 89 hP~v~~~~~~~~~~~~~~~~vv~e~pll~e~~~~~~~D~vi~V~a~~e~~~~Rl~~R~---------~~s~e~~~~ri~~ 159 (194)
T PRK00081 89 HPLIREEILEQLQEAESSPYVVLDIPLLFENGLEKLVDRVLVVDAPPETQLERLMARD---------GLSEEEAEAIIAS 159 (194)
T ss_pred HHHHHHHHHHHHHHcccCCEEEEEehHhhcCCchhhCCeEEEEECCHHHHHHHHHHcC---------CCCHHHHHHHHHH
Confidence 33333333222111 1234433333332211 223332 999999999999984 55544333222
Q ss_pred ---HHHHhCCCCeEEEeecCcchhh
Q psy11030 129 ---FEREINSPTGIVYFEVPDDVMT 150 (153)
Q Consensus 129 ---~~~~~~~~~~vi~l~~~~~~~~ 150 (153)
.++....+|.||.++.+.+.+.
T Consensus 160 Q~~~~~~~~~ad~vI~N~g~~e~l~ 184 (194)
T PRK00081 160 QMPREEKLARADDVIDNNGDLEELR 184 (194)
T ss_pred hCCHHHHHHhCCEEEECCCCHHHHH
Confidence 2344557899999998877664
No 29
>PLN02422 dephospho-CoA kinase
Probab=99.53 E-value=6.3e-14 Score=97.09 Aligned_cols=140 Identities=12% Similarity=0.083 Sum_probs=89.1
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCC-----CCCH------------------HHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGG-----LVST------------------DVV 57 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~-----~~~~------------------~~~ 57 (153)
++||||||+++.|+ ++|++++++|++.++.+.++++....+.+.+.... .+.. +.+
T Consensus 9 ~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~~~Le~Il 87 (232)
T PLN02422 9 GIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKRQLLNRLL 87 (232)
T ss_pred CCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHHHHHHHHh
Confidence 58999999999998 58999999999999999877665555555443211 1222 233
Q ss_pred HHHHHHHHhh----hCCCCCcEeecCCccchhhh--hhhhhh---hhhHHHHHHHHhhcCCCCcceeecCCCCCchHHHH
Q psy11030 58 MELLGEKVLK----ELPNSKGYLIDGYPREKAQG--EQFERE---DVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQ 128 (153)
Q Consensus 58 ~~~l~~~~~~----~~~~~~~~ildg~p~~~~q~--~~~~~~---~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~ 128 (153)
+..+...+.. .......+++=..|...+.. ..++.. .||.+++.+|+++|+ |++++....+.
T Consensus 88 HP~V~~~~~~~~~~~~~~~~~~vv~eipLL~E~~~~~~~D~vI~V~a~~e~ri~RL~~R~---------g~s~eea~~Ri 158 (232)
T PLN02422 88 APYISSGIFWEILKLWLKGCKVIVLDIPLLFETKMDKWTKPVVVVWVDPETQLERLMARD---------GLSEEQARNRI 158 (232)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEEEehhhhhcchhhhCCEEEEEECCHHHHHHHHHHcC---------CCCHHHHHHHH
Confidence 3333333321 11122345554555443321 223333 999999999999995 55554443332
Q ss_pred -----HHHHhCCCCeEEEeecCcchhh
Q psy11030 129 -----FEREINSPTGIVYFEVPDDVMT 150 (153)
Q Consensus 129 -----~~~~~~~~~~vi~l~~~~~~~~ 150 (153)
.++....+|.||.|+.+.+.+.
T Consensus 159 ~~Q~~~eek~~~AD~VI~N~gs~e~L~ 185 (232)
T PLN02422 159 NAQMPLDWKRSKADIVIDNSGSLEDLK 185 (232)
T ss_pred HHcCChhHHHhhCCEEEECCCCHHHHH
Confidence 2345668999999999987764
No 30
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.52 E-value=1.4e-14 Score=97.14 Aligned_cols=137 Identities=16% Similarity=0.198 Sum_probs=83.9
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCC-----CCCH------------------HHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGG-----LVST------------------DVV 57 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~-----~~~~------------------~~~ 57 (153)
+.||||||+++.|++ +|++++++|.+.++.+..+.+....+.+.+.... .+.. ..+
T Consensus 8 ~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~~~L~~ii 86 (180)
T PF01121_consen 8 GIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKLKKLENII 86 (180)
T ss_dssp STTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHHHHHHHHH
Confidence 479999999999988 9999999999999998877776666665554322 2222 233
Q ss_pred HHHHHHHHhhhCC--CCCcEeecCCccchhh--hhhhhhh---hhhHHHHHHHHhhcCCCCcceeecCCCCCchHHHH--
Q psy11030 58 MELLGEKVLKELP--NSKGYLIDGYPREKAQ--GEQFERE---DVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQ-- 128 (153)
Q Consensus 58 ~~~l~~~~~~~~~--~~~~~ildg~p~~~~q--~~~~~~~---~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~-- 128 (153)
+.++...+..... ....+++=..|...+. ...++.. .||.+++.+|+++|+ |+++.......
T Consensus 87 hP~I~~~~~~~~~~~~~~~~~v~e~pLL~E~~~~~~~D~vi~V~a~~e~ri~Rl~~R~---------~~~~~~~~~ri~~ 157 (180)
T PF01121_consen 87 HPLIREEIEKFIKRNKSEKVVVVEIPLLFESGLEKLCDEVIVVYAPEEIRIKRLMERD---------GLSEEEAEARIAS 157 (180)
T ss_dssp HHHHHHHHHHHHHHCHSTSEEEEE-TTTTTTTGGGGSSEEEEEE--HHHHHHHHHHHH---------TSTHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhccCCCEEEEEcchhhhhhHhhhhceEEEEECCHHHHHHHHHhhC---------CCcHHHHHHHHHh
Confidence 3443333333211 1113444344443332 1223333 999999999999994 77776655553
Q ss_pred ---HHHHhCCCCeEEEeecCcc
Q psy11030 129 ---FEREINSPTGIVYFEVPDD 147 (153)
Q Consensus 129 ---~~~~~~~~~~vi~l~~~~~ 147 (153)
.+++...+|.||.|+.+.+
T Consensus 158 Q~~~~~k~~~ad~vI~N~g~~~ 179 (180)
T PF01121_consen 158 QMPDEEKRKRADFVIDNNGSLE 179 (180)
T ss_dssp S--HHHHHHH-SEEEE-SSHHH
T ss_pred CCCHHHHHHhCCEEEECCCCCC
Confidence 3556678999999998754
No 31
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.52 E-value=5.6e-14 Score=90.72 Aligned_cols=102 Identities=19% Similarity=0.268 Sum_probs=66.3
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
||||||||+|+.||+++|++|+|++.++|+..++ .|..+.++..-.+.-|. +...+....... ...+++|++|.
T Consensus 8 ~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e---~gmsl~ef~~~AE~~p~--iD~~iD~rq~e~-a~~~nvVlegr 81 (179)
T COG1102 8 LPGSGKTTVARELAEHLGLKLVSAGTIFREMARE---RGMSLEEFSRYAEEDPE--IDKEIDRRQKEL-AKEGNVVLEGR 81 (179)
T ss_pred CCCCChhHHHHHHHHHhCCceeeccHHHHHHHHH---cCCCHHHHHHHHhcCch--hhHHHHHHHHHH-HHcCCeEEhhh
Confidence 7999999999999999999999999999997764 44455544332222221 112222222222 23578999987
Q ss_pred ccchhhh--hhhhhh-hhhHHHHHHHHhhcC
Q psy11030 81 PREKAQG--EQFERE-DVVMELLGEKVLKEL 108 (153)
Q Consensus 81 p~~~~q~--~~~~~~-~~~~~~l~~Rl~~R~ 108 (153)
-..+.-. ..+.-. .+|.+++.+|+..|.
T Consensus 82 LA~Wi~k~~adlkI~L~Apl~vRa~Ria~RE 112 (179)
T COG1102 82 LAGWIVREYADLKIWLKAPLEVRAERIAKRE 112 (179)
T ss_pred hHHHHhccccceEEEEeCcHHHHHHHHHHhc
Confidence 3322111 111111 899999999999996
No 32
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.52 E-value=1.2e-13 Score=94.24 Aligned_cols=140 Identities=17% Similarity=0.234 Sum_probs=89.2
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCH-----H------------------HH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVST-----D------------------VV 57 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~------------------~~ 57 (153)
++||||||+|+.|+. +|++++++|++.++.+..+.+....+.+.+..+...++ . .+
T Consensus 9 ~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~~~le~i~ 87 (200)
T PRK14734 9 GIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQTALLNAIT 87 (200)
T ss_pred CCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHHHHHHHhh
Confidence 589999999999987 89999999999999998877776777766655443321 1 11
Q ss_pred HHHHHHHHh----hhCCCCCcEeecCCccchhhh--hhhhhh---hhhHHHHHHHHhhcCCCCcceeecCCCCCchHHHH
Q psy11030 58 MELLGEKVL----KELPNSKGYLIDGYPREKAQG--EQFERE---DVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQ 128 (153)
Q Consensus 58 ~~~l~~~~~----~~~~~~~~~ildg~p~~~~q~--~~~~~~---~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~ 128 (153)
+..+...+. .....+..+++-..|...+.. ..++.. .||.+++.+|+.+|+ |++.+....+.
T Consensus 88 hP~v~~~~~~~~~~~~~~~~~~vv~e~plL~e~g~~~~~D~vi~V~a~~e~ri~Rl~~R~---------g~s~e~~~~ri 158 (200)
T PRK14734 88 HPRIAEETARRFNEARAQGAKVAVYDMPLLVEKGLDRKMDLVVVVDVDVEERVRRLVEKR---------GLDEDDARRRI 158 (200)
T ss_pred CHHHHHHHHHHHHHHHhcCCCEEEEEeeceeEcCccccCCeEEEEECCHHHHHHHHHHcC---------CCCHHHHHHHH
Confidence 122222221 111112234444444433322 123333 999999999999984 55554444333
Q ss_pred -----HHHHhCCCCeEEEeecCcchhh
Q psy11030 129 -----FEREINSPTGIVYFEVPDDVMT 150 (153)
Q Consensus 129 -----~~~~~~~~~~vi~l~~~~~~~~ 150 (153)
.+.....+|.||.++.+.+.+.
T Consensus 159 ~~Q~~~~~k~~~ad~vI~N~g~~e~l~ 185 (200)
T PRK14734 159 AAQIPDDVRLKAADIVVDNNGTREQLL 185 (200)
T ss_pred HhcCCHHHHHHhCCEEEECcCCHHHHH
Confidence 1344568999999999987764
No 33
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.51 E-value=6.8e-14 Score=94.75 Aligned_cols=140 Identities=17% Similarity=0.221 Sum_probs=86.2
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHc-----CCCCCHHH------------------H
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKD-----GGLVSTDV------------------V 57 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~-----~~~~~~~~------------------~ 57 (153)
++||||||+|+.|++..+++++++|++.++.+..+.+....+.+.+.. ...+.... +
T Consensus 7 ~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~~le~il 86 (188)
T TIGR00152 7 GIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELKWLNNLL 86 (188)
T ss_pred CCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHHHHHHhh
Confidence 589999999999999877999999999999998776655555544421 11122111 1
Q ss_pred HH----HHHHHHhhhCCCCCcEeecCCccchhh-h-hhhhhh---hhhHHHHHHHHhhcCCCCcceeecCCCCCchHHHH
Q psy11030 58 ME----LLGEKVLKELPNSKGYLIDGYPREKAQ-G-EQFERE---DVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQ 128 (153)
Q Consensus 58 ~~----~l~~~~~~~~~~~~~~ildg~p~~~~q-~-~~~~~~---~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~ 128 (153)
.. .+.+.+.... ..+.+|+-+.|...+. . ..++.. .+|.+++.+|+..|+ |++......+.
T Consensus 87 hP~i~~~i~~~i~~~~-~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~~~~~~~Rl~~R~---------~~s~~~~~~r~ 156 (188)
T TIGR00152 87 HPLIREWMKKLLAQFQ-SKLAYVLLDVPLLFENKLRSLCDRVIVVDVSPQLQLERLMQRD---------NLTEEEVQKRL 156 (188)
T ss_pred CHHHHHHHHHHHHHhh-cCCCEEEEEchHhhhCCcHHhCCEEEEEECCHHHHHHHHHHcC---------CCCHHHHHHHH
Confidence 11 1222232221 1223455444444331 1 222222 999999999999985 44443333222
Q ss_pred -----HHHHhCCCCeEEEeecCcchhh
Q psy11030 129 -----FEREINSPTGIVYFEVPDDVMT 150 (153)
Q Consensus 129 -----~~~~~~~~~~vi~l~~~~~~~~ 150 (153)
..+....+|.||.++.+.+++.
T Consensus 157 ~~q~~~~~~~~~ad~vI~N~~~~e~l~ 183 (188)
T TIGR00152 157 ASQMDIEERLARADDVIDNSATLADLV 183 (188)
T ss_pred HhcCCHHHHHHhCCEEEECCCCHHHHH
Confidence 2344557999999999988775
No 34
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.50 E-value=1.1e-13 Score=94.42 Aligned_cols=140 Identities=13% Similarity=0.148 Sum_probs=87.1
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcC----CCCCH------------------HHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDG----GLVST------------------DVVM 58 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~----~~~~~------------------~~~~ 58 (153)
++||||||+++.|++++|++++++|.+.++.+.. .+....+.+.+..+ ..+.. ..++
T Consensus 14 ~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~-~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~~~~~Le~i~H 92 (204)
T PRK14733 14 GIASGKSTATRILKEKLNLNVVCADTISREITKK-PSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKEAKKWLEDYLH 92 (204)
T ss_pred CCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCc-hHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHHHHHHHHhhhh
Confidence 5899999999999998999999999999998754 22223333332211 11222 2333
Q ss_pred HHHHHHHhhhCC-CCCcEeecCCccchhhh----hhhhhh---hhhHHHHHHHHhhcCCCCcceeecCCCCCchHHHH--
Q psy11030 59 ELLGEKVLKELP-NSKGYLIDGYPREKAQG----EQFERE---DVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQ-- 128 (153)
Q Consensus 59 ~~l~~~~~~~~~-~~~~~ildg~p~~~~q~----~~~~~~---~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~-- 128 (153)
..+...+.+... ....+++=..|...+.. ..++.. .||.+++.+|+++|+ |++++.+....
T Consensus 93 P~V~~~~~~~~~~~~~~~vv~eipLL~E~~~~~~~~~D~vi~V~a~~e~ri~Rl~~Rd---------~~s~~~a~~ri~~ 163 (204)
T PRK14733 93 PVINKEIKKQVKESDTVMTIVDIPLLGPYNFRHYDYLKKVIVIKADLETRIRRLMERD---------GKNRQQAVAFINL 163 (204)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEechhhhccCchhhhCCEEEEEECCHHHHHHHHHHcC---------CCCHHHHHHHHHh
Confidence 333333332211 12234433344443321 223333 899999999999984 77666554443
Q ss_pred ---HHHHhCCCCeEEEeec-Ccchhh
Q psy11030 129 ---FEREINSPTGIVYFEV-PDDVMT 150 (153)
Q Consensus 129 ---~~~~~~~~~~vi~l~~-~~~~~~ 150 (153)
.++....+|.||.++. +.+.+.
T Consensus 164 Q~~~eek~~~aD~VI~N~g~~~~~l~ 189 (204)
T PRK14733 164 QISDKEREKIADFVIDNTELTDQELE 189 (204)
T ss_pred CCCHHHHHHhCCEEEECcCCCHHHHH
Confidence 3566778999999999 877766
No 35
>KOG3347|consensus
Probab=99.47 E-value=2.5e-13 Score=86.59 Aligned_cols=122 Identities=25% Similarity=0.370 Sum_probs=82.4
Q ss_pred CCCChHHHHHHHHHHhCCceechhHHHHHHH-hcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEV-NSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 2 pGsGKst~a~~L~~~~~~~~i~~~~l~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
||+||||+|++||+.+|+.+|.+++++++.. ..+... .. +...+..+.+...+...+.+ .|.|+|-+
T Consensus 16 PG~GKstl~~~lae~~~~~~i~isd~vkEn~l~~gyDE--~y-----~c~i~DEdkv~D~Le~~m~~-----Gg~IVDyH 83 (176)
T KOG3347|consen 16 PGTGKSTLAERLAEKTGLEYIEISDLVKENNLYEGYDE--EY-----KCHILDEDKVLDELEPLMIE-----GGNIVDYH 83 (176)
T ss_pred CCCCchhHHHHHHHHhCCceEehhhHHhhhcchhcccc--cc-----cCccccHHHHHHHHHHHHhc-----CCcEEeec
Confidence 8999999999999999999999999999842 111110 00 12234444455555555542 78999988
Q ss_pred ccchhhhhhhhhh---hhhHHHHHHHHhhcCCCCcceeecCCCCCch----HHHHH----HHHh--CCCCeEEEeecC
Q psy11030 81 PREKAQGEQFERE---DVVMELLGEKVLKELPNSKGYLIDGYPREKA----QGEQF----EREI--NSPTGIVYFEVP 145 (153)
Q Consensus 81 p~~~~q~~~~~~~---~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~----~~~~~----~~~~--~~~~~vi~l~~~ 145 (153)
-+..-...+|+.. +||.++|++||..| ||..++. +.+.+ ++.. -.++.|..+...
T Consensus 84 gCd~FperwfdlVvVLr~~~s~LY~RL~sR----------gY~e~Ki~eNiecEIfgv~~eea~eSy~~~iV~eL~s~ 151 (176)
T KOG3347|consen 84 GCDFFPERWFDLVVVLRTPNSVLYDRLKSR----------GYSEKKIKENIECEIFGVVLEEARESYSPKIVVELQSE 151 (176)
T ss_pred ccCccchhheeEEEEEecCchHHHHHHHHc----------CCCHHHHhhhcchHHHHHHHHHHHHHcCCcceeecCcC
Confidence 7766666676666 99999999999998 6666443 22322 2222 267777777654
No 36
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.47 E-value=2e-13 Score=92.77 Aligned_cols=139 Identities=20% Similarity=0.260 Sum_probs=86.9
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCH-----------------------HHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVST-----------------------DVV 57 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~-----------------------~~~ 57 (153)
.|||||||+|+.+++ +|++++++|+++|+.+.++++....+...+.....-++ ..+
T Consensus 10 ~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~~~~Le~i~ 88 (201)
T COG0237 10 GIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEARLKLEKIL 88 (201)
T ss_pred CCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHHHHHHHHhh
Confidence 489999999999888 99999999999999888776655555544432221111 122
Q ss_pred HHHHHHHHh-hhCCCCCcEeecCCccchhh-hh-hhhhh---hhhHHHHHHHHhhcCCCCcceeecCCCCCchHHHH---
Q psy11030 58 MELLGEKVL-KELPNSKGYLIDGYPREKAQ-GE-QFERE---DVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQ--- 128 (153)
Q Consensus 58 ~~~l~~~~~-~~~~~~~~~ildg~p~~~~q-~~-~~~~~---~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~--- 128 (153)
..++...+. .......++++-..|...+. .. +++.. .||++++.+|+++|+ +..++..+++.
T Consensus 89 hPli~~~~~~~~~~~~~~~~~~eiplL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~---------~~~~e~~~~~~~~Q 159 (201)
T COG0237 89 HPLIRAEIKVVIDGARSPYVVLEIPLLFEAGGEKYFDKVIVVYAPPEIRLERLMKRD---------GLDEEDAEARLASQ 159 (201)
T ss_pred hHHHHHHHHHHHHHhhCCceEEEchHHHhccccccCCEEEEEECCHHHHHHHHHhcC---------CCCHHHHHHHHHhc
Confidence 222223221 11111223666666665554 22 23233 999999999999995 33333333333
Q ss_pred --HHHHhCCCCeEEEeecCcchh
Q psy11030 129 --FEREINSPTGIVYFEVPDDVM 149 (153)
Q Consensus 129 --~~~~~~~~~~vi~l~~~~~~~ 149 (153)
.++.+..+|.|+.++.+.+.+
T Consensus 160 ~~~~ek~~~ad~vi~n~~~i~~l 182 (201)
T COG0237 160 RDLEEKLALADVVIDNDGSIENL 182 (201)
T ss_pred CCHHHHHhhcCChhhcCCCHHHH
Confidence 244577899999999986654
No 37
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.45 E-value=2.2e-13 Score=89.66 Aligned_cols=132 Identities=17% Similarity=0.234 Sum_probs=81.0
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHc-CCCCCHHHHHHHHHHHHhhhCCCCCcEeecC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKD-GGLVSTDVVMELLGEKVLKELPNSKGYLIDG 79 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg 79 (153)
+|||||||+++.||+.++++++++|.++.+.. |..+.+++.. |+......-.+.+.+.+... +.+|-.|
T Consensus 10 ~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~------g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~----~~ViaTG 79 (172)
T COG0703 10 FMGAGKSTIGRALAKALNLPFIDTDQEIEKRT------GMSIAEIFEEEGEEGFRRLETEVLKELLEED----NAVIATG 79 (172)
T ss_pred CCCCCHhHHHHHHHHHcCCCcccchHHHHHHH------CcCHHHHHHHHhHHHHHHHHHHHHHHHhhcC----CeEEECC
Confidence 68999999999999999999999999999954 4566666643 55444444444444443322 2233222
Q ss_pred --Cccchhhhhhhhhh------hhhHHHHHHHHhhcCCCCcceeecCCCCCchHHHH-HHHHhC----CCCeEEEeecCc
Q psy11030 80 --YPREKAQGEQFERE------DVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQ-FEREIN----SPTGIVYFEVPD 146 (153)
Q Consensus 80 --~p~~~~q~~~~~~~------~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~-~~~~~~----~~~~vi~l~~~~ 146 (153)
.....+....+... .+|.+++++|+. ...++....+.-|+. ..+. +++..+ .+++++..+...
T Consensus 80 GG~v~~~enr~~l~~~g~vv~L~~~~e~l~~Rl~--~~~~RPll~~~~~~~--~l~~L~~~R~~~Y~e~a~~~~~~~~~~ 155 (172)
T COG0703 80 GGAVLSEENRNLLKKRGIVVYLDAPFETLYERLQ--RDRKRPLLQTEDPRE--ELEELLEERQPLYREVADFIIDTDDRS 155 (172)
T ss_pred CccccCHHHHHHHHhCCeEEEEeCCHHHHHHHhc--cccCCCcccCCChHH--HHHHHHHHHHHHHHHhCcEEecCCCCc
Confidence 33333334444333 999999999998 344455555555522 1222 222222 477787777665
No 38
>KOG3220|consensus
Probab=99.45 E-value=9.1e-13 Score=87.91 Aligned_cols=139 Identities=15% Similarity=0.144 Sum_probs=94.5
Q ss_pred CCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCC-----CHHHHHHH----------------
Q psy11030 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLV-----STDVVMEL---------------- 60 (153)
Q Consensus 2 pGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~~---------------- 60 (153)
.||||||+++.+. .+|+++|++|.+.|+..+++++-...+.+.+...... ..+.+.++
T Consensus 10 iatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~r~~Ln~Ith 88 (225)
T KOG3220|consen 10 IATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKKRQALNKITH 88 (225)
T ss_pred cccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHHHHHHHhccc
Confidence 5899999999886 7999999999999999998888777777666543222 22211111
Q ss_pred --HH----HHHhhhCCCCCcEeecCCccchhhh--hhhhhh---hhhHHHHHHHHhhcCCCCcceeecCCCCCchHHHH-
Q psy11030 61 --LG----EKVLKELPNSKGYLIDGYPREKAQG--EQFERE---DVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQ- 128 (153)
Q Consensus 61 --l~----~~~~~~~~~~~~~ildg~p~~~~q~--~~~~~~---~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~- 128 (153)
+. ..+......+..||+=+.|...+-. .++... .|+.++..+|++.|+ +.++..++.+.
T Consensus 89 P~Ir~em~ke~~~~~l~G~r~ivlDiPLLFE~~~~~~~~~tvvV~cd~~~Ql~Rl~~Rd---------~lse~dAe~Rl~ 159 (225)
T KOG3220|consen 89 PAIRKEMFKEILKLLLRGYRVIVLDIPLLFEAKLLKICHKTVVVTCDEELQLERLVERD---------ELSEEDAENRLQ 159 (225)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEechHHHHHhHHhheeeEEEEEECcHHHHHHHHHhc---------cccHHHHHHHHH
Confidence 11 1111122345566666666654441 111111 999999999999995 56666655554
Q ss_pred ----HHHHhCCCCeEEEeecCcchhh
Q psy11030 129 ----FEREINSPTGIVYFEVPDDVMT 150 (153)
Q Consensus 129 ----~~~~~~~~~~vi~l~~~~~~~~ 150 (153)
++++...+|.|+.++.+.+++.
T Consensus 160 sQmp~~~k~~~a~~Vi~Nng~~~~l~ 185 (225)
T KOG3220|consen 160 SQMPLEKKCELADVVIDNNGSLEDLY 185 (225)
T ss_pred hcCCHHHHHHhhheeecCCCChHHHH
Confidence 4667779999999999988875
No 39
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.44 E-value=7.4e-13 Score=92.57 Aligned_cols=141 Identities=16% Similarity=0.089 Sum_probs=87.0
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHc-----CCCCCHHHH------------------
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKD-----GGLVSTDVV------------------ 57 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~-----~~~~~~~~~------------------ 57 (153)
+.||||||+++.|.+++|++++++|.+.++.+.++......+.+.+.. ...+....+
T Consensus 9 gIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~~~~Le~i~ 88 (244)
T PTZ00451 9 GIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQARRALGRIM 88 (244)
T ss_pred CCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHHHHHHHHHh
Confidence 479999999999999899999999999999987766555555544421 112332222
Q ss_pred HHHHHHHHhhhC-------------CCCCcEeecCCccchhhh--h-hhhhh---hhhHHHHHHHHhhcCCCCcceeecC
Q psy11030 58 MELLGEKVLKEL-------------PNSKGYLIDGYPREKAQG--E-QFERE---DVVMELLGEKVLKELPNSKGYLIDG 118 (153)
Q Consensus 58 ~~~l~~~~~~~~-------------~~~~~~ildg~p~~~~q~--~-~~~~~---~~~~~~l~~Rl~~R~~~~~~~~~dg 118 (153)
+..+...+.+.. ..+..+|+=..|...+.. . .++.. .||.+++.+|+..|+ |
T Consensus 89 HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~evPLL~E~~~~~~~~D~iv~V~a~~e~ri~RL~~R~---------g 159 (244)
T PTZ00451 89 NPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDAPTLFETKTFTYFVSASVVVSCSEERQIERLRKRN---------G 159 (244)
T ss_pred CHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEechhhccCchhhcCCeEEEEECCHHHHHHHHHHcC---------C
Confidence 222222211110 012234444444443321 1 22333 999999999999984 5
Q ss_pred CCCCchHHHH-----HHHHhCCCCeEEEee--cCcchhh
Q psy11030 119 YPREKAQGEQ-----FEREINSPTGIVYFE--VPDDVMT 150 (153)
Q Consensus 119 ~~~~~~~~~~-----~~~~~~~~~~vi~l~--~~~~~~~ 150 (153)
++.+.++.+. .++....+|.||.|+ .+.+++.
T Consensus 160 ~s~eea~~Ri~~Q~~~~ek~~~aD~VI~N~~~g~~~~L~ 198 (244)
T PTZ00451 160 FSKEEALQRIGSQMPLEEKRRLADYIIENDSADDLDELR 198 (244)
T ss_pred CCHHHHHHHHHhCCCHHHHHHhCCEEEECCCCCCHHHHH
Confidence 5555444443 234556899999999 8877765
No 40
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.44 E-value=4.5e-13 Score=91.16 Aligned_cols=140 Identities=15% Similarity=0.101 Sum_probs=87.8
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCC-----CCCH------------------HHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGG-----LVST------------------DVV 57 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~-----~~~~------------------~~~ 57 (153)
++||||||+++.|++ +|+.++++|.+.+..+..+......+.+.+.... .+.. +.+
T Consensus 7 ~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~~L~~i~ 85 (196)
T PRK14732 7 MIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLKALNELI 85 (196)
T ss_pred CCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHHHHHHHh
Confidence 689999999998865 7999999999999988776665555554443211 1111 233
Q ss_pred HHHHHHHHhhhCC--CCCcEeecCCccchhhh--hhhhhh---hhhHHHHHHHHhhcCCCCcceeecCCCCCchHHHH--
Q psy11030 58 MELLGEKVLKELP--NSKGYLIDGYPREKAQG--EQFERE---DVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQ-- 128 (153)
Q Consensus 58 ~~~l~~~~~~~~~--~~~~~ildg~p~~~~q~--~~~~~~---~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~-- 128 (153)
+..+...+..... ....+++-..|...+.. ..++.. .||.+++.+|+++|+ |++.+.++.+.
T Consensus 86 hP~v~~~~~~~~~~~~~~~~vi~e~pLL~E~~~~~~~D~vi~V~a~~e~r~~RL~~R~---------g~s~e~a~~ri~~ 156 (196)
T PRK14732 86 HPLVRKDFQKILQTTAEGKLVIWEVPLLFETDAYTLCDATVTVDSDPEESILRTISRD---------GMKKEDVLARIAS 156 (196)
T ss_pred hHHHHHHHHHHHHHHhcCCcEEEEeeeeeEcCchhhCCEEEEEECCHHHHHHHHHHcC---------CCCHHHHHHHHHH
Confidence 3333333322111 12345555556554422 223333 999999999999984 55554444333
Q ss_pred ---HHHHhCCCCeEEEeecCcchhh
Q psy11030 129 ---FEREINSPTGIVYFEVPDDVMT 150 (153)
Q Consensus 129 ---~~~~~~~~~~vi~l~~~~~~~~ 150 (153)
.++....+|+||.++.+.+.+.
T Consensus 157 Q~~~~~k~~~aD~vI~N~~~~~~l~ 181 (196)
T PRK14732 157 QLPITEKLKRADYIVRNDGNREGLK 181 (196)
T ss_pred cCCHHHHHHhCCEEEECCCCHHHHH
Confidence 2345568999999999877664
No 41
>PRK03839 putative kinase; Provisional
Probab=99.41 E-value=4.3e-13 Score=90.19 Aligned_cols=94 Identities=16% Similarity=0.201 Sum_probs=60.7
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
+|||||||+|+.|+++++++|+++|+++++.. .+..... .+. ...+.+...+... ....++|+||+
T Consensus 8 ~pGsGKsT~~~~La~~~~~~~id~d~~~~~~~-----~~~~~~~---~~~-----~~~~~l~~~~~~~-~~~~~vIidG~ 73 (180)
T PRK03839 8 TPGVGKTTVSKLLAEKLGYEYVDLTEFALKKG-----IGEEKDD---EME-----IDFDKLAYFIEEE-FKEKNVVLDGH 73 (180)
T ss_pred CCCCCHHHHHHHHHHHhCCcEEehhhhhhhcC-----CcccCCh---hhh-----cCHHHHHHHHHHh-ccCCCEEEEec
Confidence 69999999999999999999999999987631 1111100 011 1122333333322 12467999998
Q ss_pred ccchhhhhhhhhhhhhHHHHHHHHhhcC
Q psy11030 81 PREKAQGEQFEREDVVMELLGEKVLKEL 108 (153)
Q Consensus 81 p~~~~q~~~~~~~~~~~~~l~~Rl~~R~ 108 (153)
+....+...+...+++++++.+|+..|.
T Consensus 74 ~~~l~~~~~vi~L~~~~~~~~~Rl~~R~ 101 (180)
T PRK03839 74 LSHLLPVDYVIVLRAHPKIIKERLKERG 101 (180)
T ss_pred cccccCCCEEEEEECCHHHHHHHHHHcC
Confidence 6544333322222899999999999874
No 42
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.36 E-value=4.2e-12 Score=87.30 Aligned_cols=140 Identities=17% Similarity=0.149 Sum_probs=80.8
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHc--------CC-CCCHHH---------------
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKD--------GG-LVSTDV--------------- 56 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~--------~~-~~~~~~--------------- 56 (153)
++||||||+++.|+. +|++++++|.+.++.+.++......+...+.. |. .+....
T Consensus 13 ~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~vf~~~~~~~~l 91 (208)
T PRK14731 13 GIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVVFSDPEKLGAL 91 (208)
T ss_pred CCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHHhCCHHHHHHH
Confidence 689999999999986 89999999999998876544333333322211 11 122111
Q ss_pred ---HHHHHH----HHHhhhCCCCCcEeecCCccchhhh--hhhhhh---hhhHHHHHHHHhhcCCCCcceeecCCCCCch
Q psy11030 57 ---VMELLG----EKVLKELPNSKGYLIDGYPREKAQG--EQFERE---DVVMELLGEKVLKELPNSKGYLIDGYPREKA 124 (153)
Q Consensus 57 ---~~~~l~----~~~~~~~~~~~~~ildg~p~~~~q~--~~~~~~---~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~ 124 (153)
++..+. ..+.........+++-+.|...+.. ..++.. .||.+++.+|++.|+ +.+....
T Consensus 92 ~~i~hp~i~~~~~~~i~~~~~~~~~vvv~e~pLL~e~~~~~~~d~ii~V~a~~e~~~~Rl~~R~---------~~s~e~~ 162 (208)
T PRK14731 92 NRLIHPKVFAAFQRAVDRAARRGKRILVKEAAILFESGGDAGLDFIVVVAADTELRLERAVQRG---------MGSREEI 162 (208)
T ss_pred HHHHCHHHHHHHHHHHHHHHhcCCCEEEEEeeeeeecCchhcCCeEEEEECCHHHHHHHHHHcC---------CCCHHHH
Confidence 112222 2222221223356665555443322 112222 999999999999995 2222222
Q ss_pred HHHH-----HHHHhCCCCeEEEeecCcchhh
Q psy11030 125 QGEQ-----FEREINSPTGIVYFEVPDDVMT 150 (153)
Q Consensus 125 ~~~~-----~~~~~~~~~~vi~l~~~~~~~~ 150 (153)
+.+. ..+....+|.+|.++.+.+++.
T Consensus 163 ~~Ri~~q~~~~~~~~~ad~vI~N~g~~e~l~ 193 (208)
T PRK14731 163 RRRIAAQWPQEKLIERADYVIYNNGTLDELK 193 (208)
T ss_pred HHHHHHcCChHHHHHhCCEEEECCCCHHHHH
Confidence 2221 1233346899999999988775
No 43
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=99.35 E-value=3.5e-12 Score=83.41 Aligned_cols=126 Identities=17% Similarity=0.254 Sum_probs=78.3
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
.||+||||+|++|+ ++|+.+++..+++++.- ......+ ......+..+.+ ...+.... ...+.|+|+|
T Consensus 8 TPGvGKTT~~~~L~-~lg~~~i~l~el~~e~~-----~~~~~de-~r~s~~vD~d~~----~~~le~~~-~~~~~Ivd~H 75 (180)
T COG1936 8 TPGVGKTTVCKLLR-ELGYKVIELNELAKENG-----LYTEYDE-LRKSVIVDVDKL----RKRLEELL-REGSGIVDSH 75 (180)
T ss_pred CCCCchHHHHHHHH-HhCCceeeHHHHHHhcC-----CeeccCC-ccceEEeeHHHH----HHHHHHHh-ccCCeEeech
Confidence 49999999999999 89999999999988831 0000000 000112222222 23333221 2468899998
Q ss_pred ccchhh-hhhhhhhhhhHHHHHHHHhhcCCCCcceeecCCCCCch----HHHHH----HHHhCCCCeEEEeecCcch
Q psy11030 81 PREKAQ-GEQFEREDVVMELLGEKVLKELPNSKGYLIDGYPREKA----QGEQF----EREINSPTGIVYFEVPDDV 148 (153)
Q Consensus 81 p~~~~q-~~~~~~~~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~----~~~~~----~~~~~~~~~vi~l~~~~~~ 148 (153)
...... ...+...+|+++++.+||..| |||..+. +|+.+ .+.....+-|+.+|.+...
T Consensus 76 ~~hl~~~~dlVvVLR~~p~~L~~RLk~R----------Gy~~eKI~ENveAEi~~vi~~EA~E~~~~v~evdtt~~s 142 (180)
T COG1936 76 LSHLLPDCDLVVVLRADPEVLYERLKGR----------GYSEEKILENVEAEILDVILIEAVERFEAVIEVDTTNRS 142 (180)
T ss_pred hhhcCCCCCEEEEEcCCHHHHHHHHHHc----------CCCHHHHHHHHHHHHHHHHHHHHHHhcCceEEEECCCCC
Confidence 655444 333333399999999999999 8988754 33332 2333345778888877543
No 44
>PRK08118 topology modulation protein; Reviewed
Probab=99.34 E-value=5.7e-12 Score=83.76 Aligned_cols=87 Identities=18% Similarity=0.150 Sum_probs=57.7
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
||||||||+|+.|+++++++++++|++++..- ....+++....++.+.+. ..+||+||.
T Consensus 9 ~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~----------------w~~~~~~~~~~~~~~~~~-----~~~wVidG~ 67 (167)
T PRK08118 9 SGGSGKSTLARQLGEKLNIPVHHLDALFWKPN----------------WEGVPKEEQITVQNELVK-----EDEWIIDGN 67 (167)
T ss_pred CCCCCHHHHHHHHHHHhCCCceecchhhcccC----------------CcCCCHHHHHHHHHHHhc-----CCCEEEeCC
Confidence 79999999999999999999999999886510 012233323333333222 368999995
Q ss_pred cc-chhhh-hhhhhh---hhhHHHHHHHHhhcC
Q psy11030 81 PR-EKAQG-EQFERE---DVVMELLGEKVLKEL 108 (153)
Q Consensus 81 p~-~~~q~-~~~~~~---~~~~~~l~~Rl~~R~ 108 (153)
+. +.... ...+.. ++|.+++..|+..|.
T Consensus 68 ~~~~~~~~l~~~d~vi~Ld~p~~~~~~R~~~R~ 100 (167)
T PRK08118 68 YGGTMDIRLNAADTIIFLDIPRTICLYRAFKRR 100 (167)
T ss_pred cchHHHHHHHhCCEEEEEeCCHHHHHHHHHHHH
Confidence 44 33221 111111 899999999999884
No 45
>PRK00625 shikimate kinase; Provisional
Probab=99.34 E-value=1.7e-11 Score=81.82 Aligned_cols=101 Identities=10% Similarity=0.048 Sum_probs=59.2
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHH-cCCCCCHHHHHHHHHHHHhhhCCCCCcEeecC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMK-DGGLVSTDVVMELLGEKVLKELPNSKGYLIDG 79 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg 79 (153)
+|||||||+|+.|+++++++++++|+++++..... ....+.+.+. .|........... +... .....+|..|
T Consensus 8 ~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~--~~~~i~eif~~~Ge~~fr~~E~~~----l~~l-~~~~~VIs~G 80 (173)
T PRK00625 8 LPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGA--LYSSPKEIYQAYGEEGFCREEFLA----LTSL-PVIPSIVALG 80 (173)
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCC--CCCCHHHHHHHHCHHHHHHHHHHH----HHHh-ccCCeEEECC
Confidence 69999999999999999999999999999865321 1113333332 2322222222222 2222 1223344343
Q ss_pred --Cccchhhhhhhhhh------hhhHHHHHHHHhhcC
Q psy11030 80 --YPREKAQGEQFERE------DVVMELLGEKVLKEL 108 (153)
Q Consensus 80 --~p~~~~q~~~~~~~------~~~~~~l~~Rl~~R~ 108 (153)
.+...+....+... ++|.+++.+|+..|+
T Consensus 81 Gg~~~~~e~~~~l~~~~~Vv~L~~~~e~l~~Rl~~R~ 117 (173)
T PRK00625 81 GGTLMIEPSYAHIRNRGLLVLLSLPIATIYQRLQKRG 117 (173)
T ss_pred CCccCCHHHHHHHhcCCEEEEEECCHHHHHHHHhcCC
Confidence 23333333334222 889999999999874
No 46
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.32 E-value=2.3e-11 Score=80.95 Aligned_cols=102 Identities=18% Similarity=0.228 Sum_probs=61.7
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcC-CcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSG-SARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDG 79 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg 79 (153)
+|||||||+|+.|++++|+++++.+++++...... ... .......... + .+...+...+........++|++|
T Consensus 8 ~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~---~--~~~~~~~~~i~~~~~~~~~~Vi~g 81 (171)
T TIGR02173 8 PPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDL-IEFLNYAEEN---P--EIDKKIDRRIHEIALKEKNVVLES 81 (171)
T ss_pred CCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCH-HHHHHHHhcC---c--HHHHHHHHHHHHHHhcCCCEEEEe
Confidence 68999999999999999999999999988865431 111 1111111111 1 122333333333322356889998
Q ss_pred Cccchhhhhhhhhh---hhhHHHHHHHHhhcC
Q psy11030 80 YPREKAQGEQFERE---DVVMELLGEKVLKEL 108 (153)
Q Consensus 80 ~p~~~~q~~~~~~~---~~~~~~l~~Rl~~R~ 108 (153)
...........+.. .+|.+++.+|+.+|.
T Consensus 82 ~~~~~~~~~~~d~~v~v~a~~~~r~~R~~~R~ 113 (171)
T TIGR02173 82 RLAGWIVREYADVKIWLKAPLEVRARRIAKRE 113 (171)
T ss_pred cccceeecCCcCEEEEEECCHHHHHHHHHHcc
Confidence 64322111111111 899999999999985
No 47
>PRK06217 hypothetical protein; Validated
Probab=99.32 E-value=3.5e-12 Score=86.00 Aligned_cols=93 Identities=17% Similarity=0.198 Sum_probs=61.5
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
+|||||||+|+.|++.+|++|+++|++++.. .+.+. ....+.+.....+.+.+. ...+||+||+
T Consensus 9 ~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~--~~~~~----------~~~~~~~~~~~~~~~~~~----~~~~~vi~G~ 72 (183)
T PRK06217 9 ASGSGTTTLGAALAERLDIPHLDTDDYFWLP--TDPPF----------TTKRPPEERLRLLLEDLR----PREGWVLSGS 72 (183)
T ss_pred CCCCCHHHHHHHHHHHcCCcEEEcCceeecc--CCCCc----------cccCCHHHHHHHHHHHHh----cCCCEEEEcc
Confidence 5899999999999999999999999988752 11110 011233333333344432 2468999999
Q ss_pred ccchhhh--hhhhhh---hhhHHHHHHHHhhcCC
Q psy11030 81 PREKAQG--EQFERE---DVVMELLGEKVLKELP 109 (153)
Q Consensus 81 p~~~~q~--~~~~~~---~~~~~~l~~Rl~~R~~ 109 (153)
+...... ...+.. ++|.+++.+|+..|..
T Consensus 73 ~~~~~~~~~~~~d~~i~Ld~~~~~~~~Rl~~R~~ 106 (183)
T PRK06217 73 ALGWGDPLEPLFDLVVFLTIPPELRLERLRLREF 106 (183)
T ss_pred HHHHHHHHHhhCCEEEEEECCHHHHHHHHHcCcc
Confidence 8654221 111111 9999999999998864
No 48
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.32 E-value=6.1e-12 Score=81.34 Aligned_cols=103 Identities=20% Similarity=0.331 Sum_probs=62.9
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
||||||||+|+.|+++++..+++.|++.................. .......+...+......+..+|+|..
T Consensus 7 ~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~g~~~vvd~~ 78 (143)
T PF13671_consen 7 PPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIEA--------EERAYQILNAAIRKALRNGNSVVVDNT 78 (143)
T ss_dssp STTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHHH--------HHHHHHHHHHHHHHHHHTT-EEEEESS
T ss_pred CCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHHH--------HHHHHHHHHHHHHHHHHcCCCceeccC
Confidence 799999999999999999999999888776543221111100000 011223333444433344577899866
Q ss_pred ccchhhhhhhhhh-------------hhhHHHHHHHHhhcCCCC
Q psy11030 81 PREKAQGEQFERE-------------DVVMELLGEKVLKELPNS 111 (153)
Q Consensus 81 p~~~~q~~~~~~~-------------~~~~~~l~~Rl~~R~~~~ 111 (153)
.....+...+... ++|.+++.+|+.+|....
T Consensus 79 ~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~~ 122 (143)
T PF13671_consen 79 NLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNREG 122 (143)
T ss_dssp --SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHCCC
T ss_pred cCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCCcc
Confidence 5444443333222 889999999999986554
No 49
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.30 E-value=1.1e-11 Score=92.71 Aligned_cols=140 Identities=20% Similarity=0.277 Sum_probs=86.5
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcC-----CCCCH------------------HHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDG-----GLVST------------------DVV 57 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~-----~~~~~------------------~~~ 57 (153)
++||||||+|+.|++ +|++++++|.+.++.+..+......+.+.+..+ ..+.. ..+
T Consensus 9 ~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~~~le~i~ 87 (395)
T PRK03333 9 GIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEARAVLNGIV 87 (395)
T ss_pred CCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHHHHHHHhh
Confidence 579999999999987 899999999999999887655444444444322 11222 222
Q ss_pred HHHHHHHHhhhC--CCCCcEeecCCccchhhh--hhhhhh---hhhHHHHHHHHhhcCCCCcceeecCCCCCchHHHH--
Q psy11030 58 MELLGEKVLKEL--PNSKGYLIDGYPREKAQG--EQFERE---DVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQ-- 128 (153)
Q Consensus 58 ~~~l~~~~~~~~--~~~~~~ildg~p~~~~q~--~~~~~~---~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~-- 128 (153)
...+...+.+.. ..+..+|+.+.|...+.. ..++.. .+|.+++.+|++.|+ |+.........
T Consensus 88 hP~I~~~i~~~i~~~~~~~vvv~eipLL~E~~~~~~~D~iI~V~ap~e~ri~Rl~~rR---------g~s~~~a~~ri~~ 158 (395)
T PRK03333 88 HPLVGARRAELIAAAPEDAVVVEDIPLLVESGMAPLFHLVVVVDADVEVRVRRLVEQR---------GMAEADARARIAA 158 (395)
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEEeeeeecCCchhhCCEEEEEECCHHHHHHHHHhcC---------CCCHHHHHHHHHh
Confidence 333333332221 123467777776554432 223333 999999999999853 33332222211
Q ss_pred ---HHHHhCCCCeEEEeecCcchhh
Q psy11030 129 ---FEREINSPTGIVYFEVPDDVMT 150 (153)
Q Consensus 129 ---~~~~~~~~~~vi~l~~~~~~~~ 150 (153)
.++....+|.+|.++.+.+.+.
T Consensus 159 Q~~~e~k~~~AD~vIdN~~s~e~l~ 183 (395)
T PRK03333 159 QASDEQRRAVADVWLDNSGTPDELV 183 (395)
T ss_pred cCChHHHHHhCCEEEECCCCHHHHH
Confidence 2344557899999999876664
No 50
>PRK13973 thymidylate kinase; Provisional
Probab=99.28 E-value=2.2e-11 Score=84.03 Aligned_cols=117 Identities=21% Similarity=0.292 Sum_probs=66.2
Q ss_pred CCCCChHHHHHHHHHHh---CCceech--------hHHHHHHHhcC--CcchhHHHHHHHcCCCCCHHHHHHHHHHHHhh
Q psy11030 1 GPGSGKGTQAEKIVQKY---GYTHIST--------GDLLREEVNSG--SARGADLSKVMKDGGLVSTDVVMELLGEKVLK 67 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~---~~~~i~~--------~~l~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 67 (153)
++||||||+++.|++.+ |+.++.+ ++.+|+.+... ...+.....++-.+ .+ .+.+...+..
T Consensus 11 ~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a--~r----~~~~~~~i~~ 84 (213)
T PRK13973 11 GEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAA--AR----DDHVEEVIRP 84 (213)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHH--HH----HHHHHHHHHH
Confidence 57999999999999999 8888766 78888766432 12223322222111 11 1122222332
Q ss_pred hCCCCCcEeecCCccchhhhhhhhhhhhhHHHHHHHHhhcCCCCcceeecCCCCC--chHHHHHHHH---hCCCCeEEEe
Q psy11030 68 ELPNSKGYLIDGYPREKAQGEQFEREDVVMELLGEKVLKELPNSKGYLIDGYPRE--KAQGEQFERE---INSPTGIVYF 142 (153)
Q Consensus 68 ~~~~~~~~ildg~p~~~~q~~~~~~~~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~--~~~~~~~~~~---~~~~~~vi~l 142 (153)
....+.-+|.|.+.-. - +..+|+++. ..+...++.. .+.||+|++|
T Consensus 85 ~l~~g~~Vi~DRy~~S-------------------~----------~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~L 135 (213)
T PRK13973 85 ALARGKIVLCDRFIDS-------------------T----------RAYQGVTGNVDPALLAALERVAINGVMPDLTLIL 135 (213)
T ss_pred HHHCCCEEEEcchhhh-------------------H----------HHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEE
Confidence 2233455666776110 0 111244432 2244445433 2579999999
Q ss_pred ecCcchhh-hc
Q psy11030 143 EVPDDVMT-IL 152 (153)
Q Consensus 143 ~~~~~~~~-~l 152 (153)
|+|++++. |+
T Consensus 136 dv~~e~~~~Rl 146 (213)
T PRK13973 136 DIPAEVGLERA 146 (213)
T ss_pred eCCHHHHHHHH
Confidence 99999988 75
No 51
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.25 E-value=3e-11 Score=87.39 Aligned_cols=101 Identities=25% Similarity=0.276 Sum_probs=63.4
Q ss_pred CCCCChHHHHHHHHHHh-CCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecC
Q psy11030 1 GPGSGKGTQAEKIVQKY-GYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDG 79 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~-~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg 79 (153)
||||||||+|+.|++++ ++.+++.|.+.+...... ..+.. .+.. .............+......+..+|+|+
T Consensus 10 ~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~~~~~~-~~~~~--~~~~----~~~~~~~~~~~~~~~~~l~~g~~vIid~ 82 (300)
T PHA02530 10 VPGSGKSTWAREFAAKNPKAVNVNRDDLRQSLFGHG-EWGEY--KFTK----EKEDLVTKAQEAAALAALKSGKSVIISD 82 (300)
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEeccHHHHHhcCCC-ccccc--ccCh----HHHHHHHHHHHHHHHHHHHcCCeEEEeC
Confidence 79999999999999999 899999977654432221 11110 0000 0011122233333333334457899999
Q ss_pred Cccchhhhhhhhhh-------------hhhHHHHHHHHhhcC
Q psy11030 80 YPREKAQGEQFERE-------------DVVMELLGEKVLKEL 108 (153)
Q Consensus 80 ~p~~~~q~~~~~~~-------------~~~~~~l~~Rl~~R~ 108 (153)
.+....+...+... .+|.+++.+|+.+|.
T Consensus 83 ~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~ 124 (300)
T PHA02530 83 TNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRG 124 (300)
T ss_pred CCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccC
Confidence 98877766544321 789999999999984
No 52
>PRK04040 adenylate kinase; Provisional
Probab=99.25 E-value=5.6e-11 Score=80.43 Aligned_cols=78 Identities=19% Similarity=0.257 Sum_probs=47.5
Q ss_pred CCCCChHHHHHHHHHHh--CCceechhHHHHHHHhc-CCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEee
Q psy11030 1 GPGSGKGTQAEKIVQKY--GYTHISTGDLLREEVNS-GSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLI 77 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~--~~~~i~~~~l~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il 77 (153)
+|||||||+++.|++++ ++.+++.++++++.... +..... +.+..-.......+..+....+... .....+|+
T Consensus 10 ~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~---d~~r~l~~~~~~~~~~~a~~~i~~~-~~~~~~~~ 85 (188)
T PRK04040 10 VPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHR---DEMRKLPPEEQKELQREAAERIAEM-AGEGPVIV 85 (188)
T ss_pred CCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCH---HHHhhCChhhhHHHHHHHHHHHHHh-hcCCCEEE
Confidence 59999999999999999 89999999999887644 211111 1111111111122333334444433 33456999
Q ss_pred cCCcc
Q psy11030 78 DGYPR 82 (153)
Q Consensus 78 dg~p~ 82 (153)
|+|..
T Consensus 86 ~~h~~ 90 (188)
T PRK04040 86 DTHAT 90 (188)
T ss_pred eeeee
Confidence 99764
No 53
>PRK13949 shikimate kinase; Provisional
Probab=99.24 E-value=6.4e-11 Score=78.88 Aligned_cols=95 Identities=19% Similarity=0.238 Sum_probs=62.2
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHH-cCCCCCHHHHHHHHHHHHhhhCCCCCcEee-c
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMK-DGGLVSTDVVMELLGEKVLKELPNSKGYLI-D 78 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~il-d 78 (153)
||||||||+++.|++.++++++++|.++.+... ..+.+++. .|.....+...+++.+ +. ...++|+ +
T Consensus 9 ~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~------~~~~~~~~~~g~~~fr~~e~~~l~~-l~----~~~~~vis~ 77 (169)
T PRK13949 9 YMGAGKTTLGKALARELGLSFIDLDFFIENRFH------KTVGDIFAERGEAVFRELERNMLHE-VA----EFEDVVIST 77 (169)
T ss_pred CCCCCHHHHHHHHHHHcCCCeecccHHHHHHHC------ccHHHHHHHhCHHHHHHHHHHHHHH-HH----hCCCEEEEc
Confidence 799999999999999999999999999887542 23333332 2333333333333333 22 1245666 4
Q ss_pred --CCccchhhhhhhhhh------hhhHHHHHHHHhh
Q psy11030 79 --GYPREKAQGEQFERE------DVVMELLGEKVLK 106 (153)
Q Consensus 79 --g~p~~~~q~~~~~~~------~~~~~~l~~Rl~~ 106 (153)
|.+....+.+.+... ++|.+++.+|+..
T Consensus 78 Ggg~~~~~~~~~~l~~~~~vi~L~~~~~~~~~Ri~~ 113 (169)
T PRK13949 78 GGGAPCFFDNMELMNASGTTVYLKVSPEVLFVRLRL 113 (169)
T ss_pred CCcccCCHHHHHHHHhCCeEEEEECCHHHHHHHHhc
Confidence 456666555555443 8999999999974
No 54
>PRK04182 cytidylate kinase; Provisional
Probab=99.22 E-value=5.7e-11 Score=79.61 Aligned_cols=103 Identities=20% Similarity=0.286 Sum_probs=60.6
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
+|||||||+|+.|++++|+++++++++++...... |..+......+...+. +...+...+........++|++|.
T Consensus 8 ~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~---g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~Vi~g~ 82 (180)
T PRK04182 8 PPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKER---GMSLEEFNKYAEEDPE--IDKEIDRRQLEIAEKEDNVVLEGR 82 (180)
T ss_pred CCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHc---CCCHHHHHHHhhcCch--HHHHHHHHHHHHHhcCCCEEEEEe
Confidence 58999999999999999999999999998866431 1122222222222221 112222222222113568889874
Q ss_pred ccchhh---hhhhhhhhhhHHHHHHHHhhcC
Q psy11030 81 PREKAQ---GEQFEREDVVMELLGEKVLKEL 108 (153)
Q Consensus 81 p~~~~q---~~~~~~~~~~~~~l~~Rl~~R~ 108 (153)
-..... ........+|.+++.+|+..|.
T Consensus 83 ~~~~~~~~~~~~~V~l~a~~e~~~~Rl~~r~ 113 (180)
T PRK04182 83 LAGWMAKDYADLKIWLKAPLEVRAERIAERE 113 (180)
T ss_pred ecceEecCCCCEEEEEECCHHHHHHHHHhcc
Confidence 221111 1111111999999999999874
No 55
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.20 E-value=4.8e-10 Score=73.14 Aligned_cols=98 Identities=19% Similarity=0.238 Sum_probs=57.5
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCC---HHHHHHHHHHHHhhhC-CCCCcEe
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVS---TDVVMELLGEKVLKEL-PNSKGYL 76 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~-~~~~~~i 76 (153)
+|||||||+|+.|++.++..+++.|++....... ....|...+ ...+...+........ ..+.++|
T Consensus 7 ~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~vV 76 (150)
T cd02021 7 VSGSGKSTVGKALAERLGAPFIDGDDLHPPANIA----------KMAAGIPLNDEDRWPWLQALTDALLAKLASAGEGVV 76 (150)
T ss_pred CCCCCHHHHHHHHHhhcCCEEEeCcccccHHHHH----------HHHcCCCCCccchhhHHHHHHHHHHHHHHhCCCCEE
Confidence 6999999999999999999999998877642210 000111111 1112222222222111 2356788
Q ss_pred ecCCccchhhhhhhhh----h-------hhhHHHHHHHHhhcC
Q psy11030 77 IDGYPREKAQGEQFER----E-------DVVMELLGEKVLKEL 108 (153)
Q Consensus 77 ldg~p~~~~q~~~~~~----~-------~~~~~~l~~Rl~~R~ 108 (153)
+|...........+.. . .||.+++.+|+..|.
T Consensus 77 id~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~ 119 (150)
T cd02021 77 VACSALKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAARK 119 (150)
T ss_pred EEeccccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhcc
Confidence 8864333333322221 1 889999999999885
No 56
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=99.18 E-value=7.6e-11 Score=80.23 Aligned_cols=109 Identities=16% Similarity=0.149 Sum_probs=65.9
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcch-hHHHHHHHcCCCCCH--------------HHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARG-ADLSKVMKDGGLVST--------------DVVMELLGEKV 65 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g-~~~~~~~~~~~~~~~--------------~~~~~~l~~~~ 65 (153)
+|||||||+|+.|++++|+.++..+|++|+.+......+ ......+..++.+++ +.+...+...+
T Consensus 11 ~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~~v~~~L~~va 90 (197)
T PRK12339 11 IPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQARAIMPGINRVI 90 (197)
T ss_pred CCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999987533322 111111111111221 11112223333
Q ss_pred hhhCCCCCcEeecCCccchhhhhhhhhh--------hhhHHHHHHHHhhcCC
Q psy11030 66 LKELPNSKGYLIDGYPREKAQGEQFERE--------DVVMELLGEKVLKELP 109 (153)
Q Consensus 66 ~~~~~~~~~~ildg~p~~~~q~~~~~~~--------~~~~~~l~~Rl~~R~~ 109 (153)
......+..+|+|+.............. -.+++.+.+|+..|..
T Consensus 91 ~~~l~~G~sVIvEgv~l~p~~~~~~~~~~v~~i~l~v~d~e~lr~Rl~~R~~ 142 (197)
T PRK12339 91 RRALLNGEDLVIESLYFHPPMIDENRTNNIRAFYLYIRDAELHRSRLADRIN 142 (197)
T ss_pred HHHHHcCCCEEEEecCcCHHHHHHHHhcCeEEEEEEeCCHHHHHHHHHHHhh
Confidence 3344567889999865444433211101 3378888899999864
No 57
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=99.17 E-value=7.5e-11 Score=77.73 Aligned_cols=98 Identities=21% Similarity=0.286 Sum_probs=61.0
Q ss_pred CCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHH-cCCCCCHHHHHHHHHHHHhhhCCCCCcEeec--
Q psy11030 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMK-DGGLVSTDVVMELLGEKVLKELPNSKGYLID-- 78 (153)
Q Consensus 2 pGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~ild-- 78 (153)
|||||||+++.||+.+|++++++|+++.+.. |..+.+++. .|.........+.+.+.+. ....+|.-
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~------g~si~~i~~~~G~~~fr~~E~~~l~~l~~----~~~~VIa~GG 70 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERT------GMSISEIFAEEGEEAFRELESEALRELLK----ENNCVIACGG 70 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHH------TSHHHHHHHHHHHHHHHHHHHHHHHHHHC----SSSEEEEE-T
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHHh------CCcHHHHHHcCChHHHHHHHHHHHHHHhc----cCcEEEeCCC
Confidence 7999999999999999999999999998854 334444432 2222222333333333332 22333333
Q ss_pred CCccchhhhhhhhhh------hhhHHHHHHHHhhcCC
Q psy11030 79 GYPREKAQGEQFERE------DVVMELLGEKVLKELP 109 (153)
Q Consensus 79 g~p~~~~q~~~~~~~------~~~~~~l~~Rl~~R~~ 109 (153)
|.+...+..+.+... +++.+++.+|+..+..
T Consensus 71 G~~~~~~~~~~L~~~g~vI~L~~~~~~l~~Rl~~~~~ 107 (158)
T PF01202_consen 71 GIVLKEENRELLKENGLVIYLDADPEELAERLRARDN 107 (158)
T ss_dssp TGGGSHHHHHHHHHHSEEEEEE--HHHHHHHHHHHCT
T ss_pred CCcCcHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCCC
Confidence 355555555555533 8999999999987643
No 58
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.15 E-value=6.3e-11 Score=76.83 Aligned_cols=95 Identities=24% Similarity=0.285 Sum_probs=55.5
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
+|||||||+|+.|++++|+++++.+.+....+.. ..... .....+...+...+.+. ....+||+||.
T Consensus 7 ~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~~~------~~~~~------~~~~~i~~~l~~~~~~~-~~~~~~Vidg~ 73 (147)
T cd02020 7 PAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVGK------LASEV------AAIPEVRKALDERQREL-AKKPGIVLEGR 73 (147)
T ss_pred CCCCCHHHHHHHHHHHhCCceeccccCCHHHHHH------HHHHh------cccHhHHHHHHHHHHHH-hhCCCEEEEee
Confidence 6999999999999999999999998543332211 00000 00011222233333222 23467999997
Q ss_pred ccchhhhhhhhhh---hhhHHHHHHHHhhcC
Q psy11030 81 PREKAQGEQFERE---DVVMELLGEKVLKEL 108 (153)
Q Consensus 81 p~~~~q~~~~~~~---~~~~~~l~~Rl~~R~ 108 (153)
............. .+|++++.+|+..|.
T Consensus 74 ~~~~~~~~~~~~~i~l~~~~~~r~~R~~~r~ 104 (147)
T cd02020 74 DIGTVVFPDADLKIFLTASPEVRAKRRAKQL 104 (147)
T ss_pred eeeeEEcCCCCEEEEEECCHHHHHHHHHHHH
Confidence 5432211111111 899999999999853
No 59
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.14 E-value=7.6e-10 Score=73.77 Aligned_cols=32 Identities=28% Similarity=0.464 Sum_probs=29.5
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEV 32 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~ 32 (153)
+|||||||+|+.|++.+|+++++.|.++....
T Consensus 10 ~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~ 41 (171)
T PRK03731 10 ARGCGKTTVGMALAQALGYRFVDTDQWLQSTS 41 (171)
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEccHHHHHHh
Confidence 58999999999999999999999999987754
No 60
>PRK07261 topology modulation protein; Provisional
Probab=99.13 E-value=7.8e-11 Score=78.64 Aligned_cols=87 Identities=20% Similarity=0.157 Sum_probs=57.3
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
+|||||||+|+.|++.+++++++.|.+..... ....+.+.....+.+.+. ...||+||.
T Consensus 8 ~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~----------------~~~~~~~~~~~~~~~~~~-----~~~wIidg~ 66 (171)
T PRK07261 8 YSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN----------------WQERDDDDMIADISNFLL-----KHDWIIDGN 66 (171)
T ss_pred CCCCCHHHHHHHHHHHhCCCeEecCCEEeccc----------------cccCCHHHHHHHHHHHHh-----CCCEEEcCc
Confidence 69999999999999999999999988754210 011122223333333332 245999999
Q ss_pred ccchhhhhhhhhh------hhhHHHHHHHHhhcC
Q psy11030 81 PREKAQGEQFERE------DVVMELLGEKVLKEL 108 (153)
Q Consensus 81 p~~~~q~~~~~~~------~~~~~~l~~Rl~~R~ 108 (153)
+........+... ++|..++..|+.+|.
T Consensus 67 ~~~~~~~~~l~~ad~vI~Ld~p~~~~~~R~lkR~ 100 (171)
T PRK07261 67 YSWCLYEERMQEADQIIFLNFSRFNCLYRAFKRY 100 (171)
T ss_pred chhhhHHHHHHHCCEEEEEcCCHHHHHHHHHHHH
Confidence 7764433322222 889999999998874
No 61
>PRK13974 thymidylate kinase; Provisional
Probab=99.13 E-value=1e-10 Score=80.62 Aligned_cols=123 Identities=18% Similarity=0.192 Sum_probs=66.9
Q ss_pred CCCCChHHHHHHHHHHhCCceec--hhHHHHHHHhcCCcchhHHHHHHHc--CCCCCHHHHHHHH--HH-------HHhh
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIS--TGDLLREEVNSGSARGADLSKVMKD--GGLVSTDVVMELL--GE-------KVLK 67 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~--~~~l~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~l--~~-------~~~~ 67 (153)
++||||||+++.|++.+...... ....+......+++.|..+.+++.. +...++.....++ .+ .+..
T Consensus 11 ~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~~~~~~~i~~ 90 (212)
T PRK13974 11 IDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRAQHVSKIIRP 90 (212)
T ss_pred CCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999988421100 0011111112356677777777642 2233443333333 11 1222
Q ss_pred hCCCCCcEeecCCccchhhhhhhhhhhhhHHHHHHHHhhcCCCCcceeecCCCCCchH--HHHHHHH---hCCCCeEEEe
Q psy11030 68 ELPNSKGYLIDGYPREKAQGEQFEREDVVMELLGEKVLKELPNSKGYLIDGYPREKAQ--GEQFERE---INSPTGIVYF 142 (153)
Q Consensus 68 ~~~~~~~~ildg~p~~~~q~~~~~~~~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~--~~~~~~~---~~~~~~vi~l 142 (153)
....+..+|.|.|.-. .+..+|+|+...+ ...++.. ...||+||+|
T Consensus 91 ~l~~g~~Vi~DRy~~S-----------------------------~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~l 141 (212)
T PRK13974 91 ALENGDWVISDRFSGS-----------------------------TLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFL 141 (212)
T ss_pred HHHCCCEEEEcCchhh-----------------------------HHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEE
Confidence 2233445666766210 1122477876443 4444432 2379999999
Q ss_pred ecCcchhh-hc
Q psy11030 143 EVPDDVMT-IL 152 (153)
Q Consensus 143 ~~~~~~~~-~l 152 (153)
++|+++++ |+
T Consensus 142 d~~~~~~~~R~ 152 (212)
T PRK13974 142 EISVEESIRRR 152 (212)
T ss_pred eCCHHHHHHHH
Confidence 99999998 75
No 62
>PRK13948 shikimate kinase; Provisional
Probab=99.11 E-value=3.9e-10 Score=75.84 Aligned_cols=94 Identities=12% Similarity=0.065 Sum_probs=58.4
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHH-cCCCCCHHHHHHHHHHHHhhhCCCCCcEeec-
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMK-DGGLVSTDVVMELLGEKVLKELPNSKGYLID- 78 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~ild- 78 (153)
+|||||||+++.|++++|++++++|.++++... ..+.+++. .|+....+...+.+.+... . .+.||.
T Consensus 18 ~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~g------~si~~if~~~Ge~~fR~~E~~~l~~l~~----~-~~~VIa~ 86 (182)
T PRK13948 18 FMGTGKSRIGWELSRALMLHFIDTDRYIERVTG------KSIPEIFRHLGEAYFRRCEAEVVRRLTR----L-DYAVISL 86 (182)
T ss_pred CCCCCHHHHHHHHHHHcCCCEEECCHHHHHHHh------CCHHHHHHHhCHHHHHHHHHHHHHHHHh----c-CCeEEEC
Confidence 589999999999999999999999999888542 34444442 2433333333333333222 1 233333
Q ss_pred --CCccchhhhhhhhhh------hhhHHHHHHHHh
Q psy11030 79 --GYPREKAQGEQFERE------DVVMELLGEKVL 105 (153)
Q Consensus 79 --g~p~~~~q~~~~~~~------~~~~~~l~~Rl~ 105 (153)
|.+...+....+... .+|.+++.+|+.
T Consensus 87 GgG~v~~~~n~~~l~~~g~vV~L~~~~e~l~~Rl~ 121 (182)
T PRK13948 87 GGGTFMHEENRRKLLSRGPVVVLWASPETIYERTR 121 (182)
T ss_pred CCcEEcCHHHHHHHHcCCeEEEEECCHHHHHHHhc
Confidence 344444343333332 899999999994
No 63
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.11 E-value=2.8e-09 Score=72.34 Aligned_cols=32 Identities=34% Similarity=0.574 Sum_probs=30.2
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEV 32 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~ 32 (153)
|+||||||+|+.||++||+.|+++|.++|...
T Consensus 12 PagsGKsTvak~lA~~Lg~~yldTGamYRa~a 43 (222)
T COG0283 12 PAGSGKSTVAKILAEKLGFHYLDTGAMYRAVA 43 (222)
T ss_pred CCccChHHHHHHHHHHhCCCeecccHHHHHHH
Confidence 88999999999999999999999999999853
No 64
>PRK06762 hypothetical protein; Provisional
Probab=99.10 E-value=3.5e-10 Score=75.04 Aligned_cols=93 Identities=18% Similarity=0.253 Sum_probs=53.0
Q ss_pred CCCCChHHHHHHHHHHh--CCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeec
Q psy11030 1 GPGSGKGTQAEKIVQKY--GYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLID 78 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~--~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ild 78 (153)
+|||||||+|+.|++++ ++.+++.|.+.+......... +. . ..+.+...+......+..+|+|
T Consensus 10 ~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~~~~~~~----------~~-~----~~~~~~~~~~~~~~~g~~vild 74 (166)
T PRK06762 10 NSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLRVKDGP----------GN-L----SIDLIEQLVRYGLGHCEFVILE 74 (166)
T ss_pred CCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhccccCCC----------CC-c----CHHHHHHHHHHHHhCCCEEEEc
Confidence 69999999999999999 566778766544332111000 00 1 1112222222222345678899
Q ss_pred CCccchhhhhhhhhh-------------hhhHHHHHHHHhhcC
Q psy11030 79 GYPREKAQGEQFERE-------------DVVMELLGEKVLKEL 108 (153)
Q Consensus 79 g~p~~~~q~~~~~~~-------------~~~~~~l~~Rl~~R~ 108 (153)
+..........+... ++|.+++.+|..+|.
T Consensus 75 ~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~ 117 (166)
T PRK06762 75 GILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRP 117 (166)
T ss_pred hhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhccc
Confidence 864322221111110 889999999999885
No 65
>PRK13947 shikimate kinase; Provisional
Probab=99.08 E-value=7e-10 Score=73.89 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=29.1
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREE 31 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~ 31 (153)
+|||||||+|+.||+.+|+++++.|.+++..
T Consensus 9 ~~GsGKst~a~~La~~lg~~~id~d~~~~~~ 39 (171)
T PRK13947 9 FMGTGKTTVGKRVATTLSFGFIDTDKEIEKM 39 (171)
T ss_pred CCCCCHHHHHHHHHHHhCCCEEECchhhhhh
Confidence 6999999999999999999999999988775
No 66
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.06 E-value=4.4e-10 Score=71.80 Aligned_cols=127 Identities=18% Similarity=0.218 Sum_probs=76.4
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHH---HHHHHHHHHHhhhCCCCCcEee
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTD---VVMELLGEKVLKELPNSKGYLI 77 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~il 77 (153)
.+||||||+++.||+++|+.+++-|++--.... +-+..|..+.|+ .+.+.+...+......+...|+
T Consensus 3 VsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi----------~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~vi 72 (161)
T COG3265 3 VSGSGKSTVGSALAERLGAKFIDGDDLHPPANI----------EKMSAGIPLNDDDRWPWLEALGDAAASLAQKNKHVVI 72 (161)
T ss_pred CCccCHHHHHHHHHHHcCCceecccccCCHHHH----------HHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCCceEE
Confidence 379999999999999999999999987655322 223445555543 2344455555554333444444
Q ss_pred cCCccchhhhhhhhhh---------hhhHHHHHHHHhhcCCCCcceeecCCCCC--chHHHHHHHHhCCCCeEEEeecC
Q psy11030 78 DGYPREKAQGEQFERE---------DVVMELLGEKVLKELPNSKGYLIDGYPRE--KAQGEQFEREINSPTGIVYFEVP 145 (153)
Q Consensus 78 dg~p~~~~q~~~~~~~---------~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~--~~~~~~~~~~~~~~~~vi~l~~~ 145 (153)
-..-......+.+... ..+.+++.+|+..|.-.- +|.+ ..|...+++....+ .||.++++
T Consensus 73 ~CSALKr~YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R~gHF-------M~~~ll~SQfa~LE~P~~de-~vi~idi~ 143 (161)
T COG3265 73 ACSALKRSYRDLLREANPGLRFVYLDGDFDLILERMKARKGHF-------MPASLLDSQFATLEEPGADE-DVLTIDID 143 (161)
T ss_pred ecHHHHHHHHHHHhccCCCeEEEEecCCHHHHHHHHHhcccCC-------CCHHHHHHHHHHhcCCCCCC-CEEEeeCC
Confidence 4432222222222222 789999999999985322 4554 35777776655444 35555544
No 67
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.06 E-value=8.5e-10 Score=85.64 Aligned_cols=96 Identities=14% Similarity=0.179 Sum_probs=59.8
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHH-HcCCCCCHHHHHHHHHHHHhhhCCCCCcEeec-
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVM-KDGGLVSTDVVMELLGEKVLKELPNSKGYLID- 78 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ild- 78 (153)
+|||||||+++.||+.+|++++++|+++.+.. |..+.+++ ..|+....+.-.+.+.+.... ...+|--
T Consensus 14 ~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~------g~si~eif~~~Ge~~FR~~E~~~l~~~~~~----~~~VIs~G 83 (542)
T PRK14021 14 MMGAGKTRVGKEVAQMMRLPFADADVEIEREI------GMSIPSYFEEYGEPAFREVEADVVADMLED----FDGIFSLG 83 (542)
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEchHHHHHHH------CcCHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCeEEECC
Confidence 58999999999999999999999999998854 45666665 345555555444444443321 1223322
Q ss_pred -CCccchhhhhhh----hhh------hhhHHHHHHHHhh
Q psy11030 79 -GYPREKAQGEQF----ERE------DVVMELLGEKVLK 106 (153)
Q Consensus 79 -g~p~~~~q~~~~----~~~------~~~~~~l~~Rl~~ 106 (153)
|.+...+....+ ... ++|.+++.+|+..
T Consensus 84 GG~v~~~~n~~~L~~~~~~~g~vv~L~~~~~~l~~Rl~~ 122 (542)
T PRK14021 84 GGAPMTPSTQHALASYIAHGGRVVYLDADPKEAMERANR 122 (542)
T ss_pred CchhCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHhC
Confidence 233333333222 111 7788888888753
No 68
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.06 E-value=1.7e-09 Score=70.65 Aligned_cols=32 Identities=19% Similarity=0.370 Sum_probs=29.7
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEV 32 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~ 32 (153)
||||||||+|+.|++.+|+++++.+.+++...
T Consensus 7 ~~GsGKstla~~la~~l~~~~~~~d~~~~~~~ 38 (154)
T cd00464 7 MMGAGKTTVGRLLAKALGLPFVDLDELIEQRA 38 (154)
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEchHHHHHHc
Confidence 69999999999999999999999999988754
No 69
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.02 E-value=2e-09 Score=71.15 Aligned_cols=29 Identities=34% Similarity=0.451 Sum_probs=26.7
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLR 29 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~ 29 (153)
||||||||+|+.|++.++..+++.|++..
T Consensus 6 ~~GsGKSTla~~l~~~l~~~~v~~D~~~~ 34 (163)
T TIGR01313 6 VAGSGKSTIASALAHRLGAKFIEGDDLHP 34 (163)
T ss_pred CCCCCHHHHHHHHHHhcCCeEEeCccccC
Confidence 79999999999999999999999988753
No 70
>PRK13946 shikimate kinase; Provisional
Probab=99.01 E-value=5.1e-09 Score=70.69 Aligned_cols=98 Identities=13% Similarity=0.173 Sum_probs=55.5
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHH-cCCCCCHHHHHHHHHHHHhhhCCCCCcEeecC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMK-DGGLVSTDVVMELLGEKVLKELPNSKGYLIDG 79 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg 79 (153)
+|||||||+++.|++++|++++++|.++.+... .. +.+++. .|.........+ .+.........+|..|
T Consensus 18 ~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~g--~~----~~e~~~~~ge~~~~~~e~~----~l~~l~~~~~~Vi~~g 87 (184)
T PRK13946 18 LMGAGKSTVGRRLATMLGLPFLDADTEIERAAR--MT----IAEIFAAYGEPEFRDLERR----VIARLLKGGPLVLATG 87 (184)
T ss_pred CCCCCHHHHHHHHHHHcCCCeECcCHHHHHHhC--CC----HHHHHHHHCHHHHHHHHHH----HHHHHHhcCCeEEECC
Confidence 589999999999999999999999988776541 11 222221 122111111122 2222212223444443
Q ss_pred C--ccchhhhhhhhhh------hhhHHHHHHHHhhcC
Q psy11030 80 Y--PREKAQGEQFERE------DVVMELLGEKVLKEL 108 (153)
Q Consensus 80 ~--p~~~~q~~~~~~~------~~~~~~l~~Rl~~R~ 108 (153)
. +........+... ++|.+++.+|+..|.
T Consensus 88 gg~~~~~~~r~~l~~~~~~v~L~a~~e~~~~Rl~~r~ 124 (184)
T PRK13946 88 GGAFMNEETRAAIAEKGISVWLKADLDVLWERVSRRD 124 (184)
T ss_pred CCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHhcCCC
Confidence 2 2333322222211 899999999998763
No 71
>KOG3354|consensus
Probab=99.01 E-value=4.1e-09 Score=67.97 Aligned_cols=126 Identities=19% Similarity=0.241 Sum_probs=72.1
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHH---HHHHHHHHHhhhCCCCCcEee
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDV---VMELLGEKVLKELPNSKGYLI 77 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~il 77 (153)
++||||||+++.|+++|++.+++.||+--....+ -+.+|..+.|+. +...+...+......+.++|+
T Consensus 20 vsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~Nve----------KM~~GipLnD~DR~pWL~~i~~~~~~~l~~~q~vVl 89 (191)
T KOG3354|consen 20 VSGSGKSTIGKALSEELGLKFIDGDDLHPPANVE----------KMTQGIPLNDDDRWPWLKKIAVELRKALASGQGVVL 89 (191)
T ss_pred cCCCChhhHHHHHHHHhCCcccccccCCCHHHHH----------HHhcCCCCCcccccHHHHHHHHHHHHHhhcCCeEEE
Confidence 4799999999999999999999999986554322 233344333322 222223333333345667777
Q ss_pred cCCccchhhhhhhhh-------------------hhhhHHHHHHHHhhcCCCCcceeecCCCCCch--HHHHHHHHhCCC
Q psy11030 78 DGYPREKAQGEQFER-------------------EDVVMELLGEKVLKELPNSKGYLIDGYPREKA--QGEQFEREINSP 136 (153)
Q Consensus 78 dg~p~~~~q~~~~~~-------------------~~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~--~~~~~~~~~~~~ 136 (153)
-..-......+.+.. ..++.+++.+|+..|.. +| +|.+.- |...++. +.+
T Consensus 90 ACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~g---HF----Mp~~lleSQf~~LE~--p~~ 160 (191)
T KOG3354|consen 90 ACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKG---HF----MPADLLESQFATLEA--PDA 160 (191)
T ss_pred EhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhccc---cc----CCHHHHHHHHHhccC--CCC
Confidence 654322222222211 07789999999998853 22 355543 4444432 333
Q ss_pred C--eEEEeecC
Q psy11030 137 T--GIVYFEVP 145 (153)
Q Consensus 137 ~--~vi~l~~~ 145 (153)
+ -+|.+++.
T Consensus 161 ~e~div~isv~ 171 (191)
T KOG3354|consen 161 DEEDIVTISVK 171 (191)
T ss_pred CccceEEEeec
Confidence 3 36666655
No 72
>PLN02199 shikimate kinase
Probab=98.98 E-value=4.4e-09 Score=75.10 Aligned_cols=58 Identities=22% Similarity=0.359 Sum_probs=40.8
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHH-cCCCCCHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMK-DGGLVSTDVVMELLGE 63 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~ 63 (153)
++||||||+++.|++.+|++++++|.++++.+. |..+.+++. .|.....+...+.+.+
T Consensus 110 ~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~-----G~sI~eIf~~~GE~~FR~~E~e~L~~ 168 (303)
T PLN02199 110 MMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMN-----GTSVAEIFVHHGENFFRGKETDALKK 168 (303)
T ss_pred CCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhc-----CCCHHHHHHHhCHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999643 344555543 3444333433343333
No 73
>COG0645 Predicted kinase [General function prediction only]
Probab=98.98 E-value=5.8e-09 Score=68.30 Aligned_cols=102 Identities=15% Similarity=0.129 Sum_probs=62.7
Q ss_pred CCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCH--HHHHHHHHHHHhhhCCCCCcEeecC
Q psy11030 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVST--DVVMELLGEKVLKELPNSKGYLIDG 79 (153)
Q Consensus 2 pGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~ildg 79 (153)
|||||||+|+.|++.+|..++.+|.+.+.+........ ...|...+. ......+..........+.++|+|+
T Consensus 10 ~GsGKstlA~~l~~~lgA~~lrsD~irk~L~g~p~~~r------~~~g~ys~~~~~~vy~~l~~~A~l~l~~G~~VVlDa 83 (170)
T COG0645 10 PGSGKSTLARGLAELLGAIRLRSDVIRKRLFGVPEETR------GPAGLYSPAATAAVYDELLGRAELLLSSGHSVVLDA 83 (170)
T ss_pred CCccHhHHHHHHHhhcCceEEehHHHHHHhcCCccccc------CCCCCCcHHHHHHHHHHHHHHHHHHHhCCCcEEEec
Confidence 89999999999999999999999877766543100000 001111111 1112222333333335688999998
Q ss_pred Cccchhhhhhhhhh-------------hhhHHHHHHHHhhcCC
Q psy11030 80 YPREKAQGEQFERE-------------DVVMELLGEKVLKELP 109 (153)
Q Consensus 80 ~p~~~~q~~~~~~~-------------~~~~~~l~~Rl~~R~~ 109 (153)
..-...+.+..... .+|.+++.+|+..|..
T Consensus 84 ~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~ 126 (170)
T COG0645 84 TFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKG 126 (170)
T ss_pred ccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCC
Confidence 65444433222221 8899999999999964
No 74
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.97 E-value=6e-09 Score=69.38 Aligned_cols=32 Identities=28% Similarity=0.483 Sum_probs=29.4
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEV 32 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~ 32 (153)
||||||||+|+.|++++|+++++.|++++...
T Consensus 12 ~~GsGKstla~~La~~l~~~~~d~d~~~~~~~ 43 (175)
T PRK00131 12 FMGAGKSTIGRLLAKRLGYDFIDTDHLIEARA 43 (175)
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEChHHHHHHc
Confidence 69999999999999999999999999887743
No 75
>PLN02924 thymidylate kinase
Probab=98.96 E-value=1.8e-09 Score=74.76 Aligned_cols=122 Identities=16% Similarity=0.195 Sum_probs=65.2
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHH-H------HHHhhhCCCCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL-G------EKVLKELPNSK 73 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l-~------~~~~~~~~~~~ 73 (153)
++||||||+++.|++.++...+.+ .+.+. ...++..|..+.+++..+.........-++ . ..+......+.
T Consensus 24 iDGsGKsTq~~~L~~~l~~~g~~v-~~~~e-p~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~~~~I~pal~~g~ 101 (220)
T PLN02924 24 LDRSGKSTQCAKLVSFLKGLGVAA-ELWRF-PDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEKRSLMERKLKSGT 101 (220)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCc-eeeeC-CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 479999999999999996554433 11111 112355666666665544333322111111 1 12222223455
Q ss_pred cEeecCCccchhhhhhhhhhhhhHHHHHHHHhhcCCCCcceeecCCCCCchHHHHHHHHhCCCCeEEEeecCcchhh-hc
Q psy11030 74 GYLIDGYPREKAQGEQFEREDVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQFEREINSPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 74 ~~ildg~p~~~~q~~~~~~~~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~vi~l~~~~~~~~-~l 152 (153)
.+|.|.+.-. ....+ ..+ |.+ ......++...+.||+|++||+|++++. |.
T Consensus 102 vVI~DRy~~S--------------~~ayq--~~~----------g~~--~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~ 153 (220)
T PLN02924 102 TLVVDRYSYS--------------GVAFS--AAK----------GLD--LEWCKAPEVGLPAPDLVLYLDISPEEAAERG 153 (220)
T ss_pred EEEEccchhH--------------HHHHH--Hhc----------CCC--HHHHHHHHhCCCCCCEEEEEeCCHHHHHHHh
Confidence 6787877321 00110 011 221 2233445555678999999999999887 64
No 76
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.95 E-value=1.6e-08 Score=67.70 Aligned_cols=107 Identities=13% Similarity=0.053 Sum_probs=58.0
Q ss_pred CCCCChHHHHHHHHHHhCCc--eechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHH---HHHHHHHHHHhhhCCCCCcE
Q psy11030 1 GPGSGKGTQAEKIVQKYGYT--HISTGDLLREEVNSGSARGADLSKVMKDGGLVSTD---VVMELLGEKVLKELPNSKGY 75 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~--~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~ 75 (153)
||||||||+|+.|++.++.. +++.|++.......... .......-..+...+.. .....+...+......+..+
T Consensus 10 ~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~G~~V 88 (175)
T cd00227 10 GSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQD-AEGGIEFDGDGGVSPGPEFRLLEGAWYEAVAAMARAGANV 88 (175)
T ss_pred CCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhcc-cccccccCccCCcccchHHHHHHHHHHHHHHHHHhCCCcE
Confidence 79999999999999998654 55777766553211100 00000000000111111 12333445555555667899
Q ss_pred eecCCcc-chhh---hhhhhh---h----hhhHHHHHHHHhhcC
Q psy11030 76 LIDGYPR-EKAQ---GEQFER---E----DVVMELLGEKVLKEL 108 (153)
Q Consensus 76 ildg~p~-~~~q---~~~~~~---~----~~~~~~l~~Rl~~R~ 108 (153)
|+|.... .... ...+.. . .||.+++.+|+.+|.
T Consensus 89 IvD~~~~~~~~~r~~~~~~~~~~~~~v~l~~~~~~l~~R~~~R~ 132 (175)
T cd00227 89 IADDVFLGRAALQDCWRSFVGLDVLWVGVRCPGEVAEGRETARG 132 (175)
T ss_pred EEeeeccCCHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhcC
Confidence 9996422 1111 111111 1 889999999999985
No 77
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.94 E-value=2.2e-09 Score=67.91 Aligned_cols=101 Identities=23% Similarity=0.283 Sum_probs=52.4
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhc-CCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhh--hCCCCCcEee
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNS-GSARGADLSKVMKDGGLVSTDVVMELLGEKVLK--ELPNSKGYLI 77 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~il 77 (153)
+|||||||+|+.|++++ +..+...... .......-............+....++...... .......+|+
T Consensus 6 ~~GsGKtTia~~L~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii 78 (129)
T PF13238_consen 6 IPGSGKTTIAKELAERL-------GDIIRDIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIRRMNKGRNIII 78 (129)
T ss_dssp STTSSHHHHHHHHHHHH-------CHHHHHHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHHHHTTTSCEEE
T ss_pred CCCCCHHHHHHHHHHHH-------CcHHHHHHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhcccccCCcEEE
Confidence 69999999999999998 2222222211 111100000111222333333332332222221 1245678899
Q ss_pred cCCccchhhhhhh----hhhhhhHHHHHHHHhhcC
Q psy11030 78 DGYPREKAQGEQF----EREDVVMELLGEKVLKEL 108 (153)
Q Consensus 78 dg~p~~~~q~~~~----~~~~~~~~~l~~Rl~~R~ 108 (153)
|++.......... ...+||++++.+|+..|.
T Consensus 79 d~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~R~ 113 (129)
T PF13238_consen 79 DGILSNLELERLFDIKFIFLDCSPEELRKRLKKRG 113 (129)
T ss_dssp EESSEEECETTEEEESSEEEE--HHHHHHHHHCTT
T ss_pred ecccchhcccccceeeEEEEECCHHHHHHHHHhCC
Confidence 9987655433222 122999999999999985
No 78
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.93 E-value=8.4e-10 Score=69.34 Aligned_cols=28 Identities=43% Similarity=0.774 Sum_probs=26.5
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLL 28 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~ 28 (153)
||||||||+|+.|++++|++++++|+++
T Consensus 7 ~~gsGKST~a~~La~~~~~~~i~~d~~~ 34 (121)
T PF13207_consen 7 PPGSGKSTLAKELAERLGFPVISMDDLI 34 (121)
T ss_dssp STTSSHHHHHHHHHHHHTCEEEEEHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCeEEEecceE
Confidence 7999999999999999999999999954
No 79
>PRK06547 hypothetical protein; Provisional
Probab=98.89 E-value=8.3e-10 Score=73.68 Aligned_cols=105 Identities=19% Similarity=0.176 Sum_probs=58.2
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHH-HHHHcCCCCCH--HHHHHHHHHHHhhhCCCCCcEee
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLS-KVMKDGGLVST--DVVMELLGEKVLKELPNSKGYLI 77 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~-~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~il 77 (153)
||||||||+|+.|++.+++.++++|++....-.. ......+. ..+..|....- +...... .... .......+|+
T Consensus 23 ~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~~~-~~~~~~l~~~~l~~g~~~~~~yd~~~~~~-~~~~-~l~~~~vVIv 99 (172)
T PRK06547 23 RSGSGKTTLAGALAARTGFQLVHLDDLYPGWHGL-AAASEHVAEAVLDEGRPGRWRWDWANNRP-GDWV-SVEPGRRLII 99 (172)
T ss_pred CCCCCHHHHHHHHHHHhCCCeecccceecccccC-ChHHHHHHHHHHhCCCCceecCCCCCCCC-CCcE-EeCCCCeEEE
Confidence 6899999999999999999999999987542110 00111122 22222321100 0000000 0000 1123456889
Q ss_pred cCCccchhhh-hhhh-----hh---hhhHHHHHHHHhhcC
Q psy11030 78 DGYPREKAQG-EQFE-----RE---DVVMELLGEKVLKEL 108 (153)
Q Consensus 78 dg~p~~~~q~-~~~~-----~~---~~~~~~l~~Rl~~R~ 108 (153)
+|......+. ..++ .. ++|.+++.+|+..|+
T Consensus 100 EG~~al~~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~Rd 139 (172)
T PRK06547 100 EGVGSLTAANVALASLLGEVLTVWLDGPEALRKERALARD 139 (172)
T ss_pred EehhhccHHHHHHhccCCCEEEEEEECCHHHHHHHHHhcC
Confidence 9874333333 3333 12 999999999999995
No 80
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.88 E-value=2.7e-09 Score=81.77 Aligned_cols=96 Identities=25% Similarity=0.327 Sum_probs=57.3
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHH-cCCCCCHHHHHHHHHHHHhhh---CCCCCcEe
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMK-DGGLVSTDVVMELLGEKVLKE---LPNSKGYL 76 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~---~~~~~~~i 76 (153)
+|||||||+|+.|++++|++++++|+++.+. .|..+.+++. .|.....+...+.+.+..... ...+.++|
T Consensus 8 ~~GsGKSTv~~~La~~lg~~~id~D~~i~~~------~g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~~~~Vis~Gggvv 81 (488)
T PRK13951 8 MMGSGKSTIGKRVSEVLDLQFIDMDEEIERR------EGRSVRRIFEEDGEEYFRLKEKELLRELVERDNVVVATGGGVV 81 (488)
T ss_pred CCCCCHHHHHHHHHHHcCCeEEECcHHHHHH------cCCCHHHHHHHhhhHHHHHHHHHHHHHHhhcCCEEEECCCccc
Confidence 6999999999999999999999999998773 2333444332 233222333333333322111 11233444
Q ss_pred ecCCccchhhhhhhhhh-----hhhHHHHHHHHhhc
Q psy11030 77 IDGYPREKAQGEQFERE-----DVVMELLGEKVLKE 107 (153)
Q Consensus 77 ldg~p~~~~q~~~~~~~-----~~~~~~l~~Rl~~R 107 (153)
++.. +.+.+... ++|.+++.+|+..+
T Consensus 82 ~~~~-----~r~~l~~~~vI~L~as~e~l~~Rl~~~ 112 (488)
T PRK13951 82 IDPE-----NRELLKKEKTLFLYAPPEVLMERVTTE 112 (488)
T ss_pred cChH-----HHHHHhcCeEEEEECCHHHHHHHhccC
Confidence 4432 22223222 89999999999754
No 81
>PRK14529 adenylate kinase; Provisional
Probab=98.87 E-value=4.6e-09 Score=72.71 Aligned_cols=58 Identities=22% Similarity=0.470 Sum_probs=46.9
Q ss_pred hhhHHHHHHHHhhcCCCCcceeecCCCCCchHHHHHHHHh----CCCCeEEEeecCcchhh-hcC
Q psy11030 94 DVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQFEREI----NSPTGIVYFEVPDDVMT-ILS 153 (153)
Q Consensus 94 ~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~~~~~~----~~~~~vi~l~~~~~~~~-~l~ 153 (153)
.+..+.+.+|+.+.. ..+|++|||||+..||+.|+..+ ..||.||+|++|+++++ ||+
T Consensus 62 ei~~~lv~~~l~~~~--~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~ 124 (223)
T PRK14529 62 DITIPMILETLKQDG--KNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIM 124 (223)
T ss_pred HHHHHHHHHHHhccC--CCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhh
Confidence 344456677887543 78999999999999999987543 47999999999999999 874
No 82
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=98.84 E-value=3.2e-08 Score=67.80 Aligned_cols=115 Identities=24% Similarity=0.310 Sum_probs=62.2
Q ss_pred CCChHHHHHHHHHHhC---CceechhHHHHHHHhcCCcchhHHHHHHHcC-CCCCHHHHHHH--------HHHHHhhhCC
Q psy11030 3 GSGKGTQAEKIVQKYG---YTHISTGDLLREEVNSGSARGADLSKVMKDG-GLVSTDVVMEL--------LGEKVLKELP 70 (153)
Q Consensus 3 GsGKst~a~~L~~~~~---~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~--------l~~~~~~~~~ 70 (153)
||||||+++.|++.+. +.++-+. -..+++.|..+.+++.++ .........-+ +.+.+.....
T Consensus 13 GaGKTT~~~~L~~~l~~~g~~v~~tr------EP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~~~i~pal~ 86 (208)
T COG0125 13 GAGKTTQAELLKERLEERGIKVVLTR------EPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLEEVIKPALK 86 (208)
T ss_pred CCCHHHHHHHHHHHHHHcCCeEEEEe------CCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999883 3333221 122455666666665544 22222212111 2233333334
Q ss_pred CCCcEeecCCccchhhhhhhhhhhhhHHHHHHHHhhcCCCCcceeecCCCCC--chHHHHHHHHhC---CCCeEEEeecC
Q psy11030 71 NSKGYLIDGYPREKAQGEQFEREDVVMELLGEKVLKELPNSKGYLIDGYPRE--KAQGEQFEREIN---SPTGIVYFEVP 145 (153)
Q Consensus 71 ~~~~~ildg~p~~~~q~~~~~~~~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~--~~~~~~~~~~~~---~~~~vi~l~~~ 145 (153)
.+.-+|.|.|.-. +..|. |.-+. ......+++..+ .||++++||++
T Consensus 87 ~g~vVI~DRy~~S---------------------------s~AYQ--g~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~ 137 (208)
T COG0125 87 EGKVVICDRYVDS---------------------------SLAYQ--GGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVP 137 (208)
T ss_pred CCCEEEECCcccH---------------------------HHHhh--hhccCCCHHHHHHHHHhccCCCCCCEEEEEeCC
Confidence 4566777777211 11111 22222 223333334444 79999999999
Q ss_pred cchhh-hc
Q psy11030 146 DDVMT-IL 152 (153)
Q Consensus 146 ~~~~~-~l 152 (153)
+++.. |+
T Consensus 138 ~e~al~R~ 145 (208)
T COG0125 138 PEVALERI 145 (208)
T ss_pred HHHHHHHH
Confidence 99988 75
No 83
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.83 E-value=3.3e-08 Score=71.90 Aligned_cols=31 Identities=19% Similarity=0.328 Sum_probs=28.5
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREE 31 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~ 31 (153)
+|||||||+++.|++++|++++++|..+.+.
T Consensus 141 ~~GsGKStvg~~La~~Lg~~~id~D~~i~~~ 171 (309)
T PRK08154 141 LRGAGKSTLGRMLAARLGVPFVELNREIERE 171 (309)
T ss_pred CCCCCHHHHHHHHHHHcCCCEEeHHHHHHHH
Confidence 5899999999999999999999999887764
No 84
>PRK08233 hypothetical protein; Provisional
Probab=98.82 E-value=7.2e-09 Score=69.55 Aligned_cols=101 Identities=17% Similarity=0.202 Sum_probs=51.2
Q ss_pred CCCCChHHHHHHHHHHhC-CceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCC-CcEeec
Q psy11030 1 GPGSGKGTQAEKIVQKYG-YTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNS-KGYLID 78 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~-~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~ild 78 (153)
+|||||||+|+.|+++++ ..++..+.+-.. . ....+......+... .......+.+.+....... ..+|+.
T Consensus 11 ~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~-~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~viv 83 (182)
T PRK08233 11 VSGGGKTTLTERLTHKLKNSKALYFDRYDFD-N-----CPEDICKWIDKGANY-SEWVLTPLIKDIQELIAKSNVDYIIV 83 (182)
T ss_pred CCCCCHHHHHHHHHhhCCCCceEEECCEEcc-c-----CchhhhhhhhccCCh-hhhhhHHHHHHHHHHHcCCCceEEEE
Confidence 689999999999999996 333333322111 0 001122222223222 2223344444454432222 244454
Q ss_pred CCccchhh--h-hhhhhh---hhhHHHHHHHHhhcC
Q psy11030 79 GYPREKAQ--G-EQFERE---DVVMELLGEKVLKEL 108 (153)
Q Consensus 79 g~p~~~~q--~-~~~~~~---~~~~~~l~~Rl~~R~ 108 (153)
++|..... . ..++.. ++|.+++.+|+..|.
T Consensus 84 d~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~ 119 (182)
T PRK08233 84 DYPFAYLNSEMRQFIDVTIFIDTPLDIAMARRILRD 119 (182)
T ss_pred eeehhhccHHHHHHcCEEEEEcCCHHHHHHHHHHHH
Confidence 44433221 1 222222 999999999988775
No 85
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.80 E-value=2.4e-08 Score=66.69 Aligned_cols=32 Identities=16% Similarity=0.296 Sum_probs=28.9
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEV 32 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~ 32 (153)
|+||||||+++.|++.++++++++|..+....
T Consensus 12 ~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~ 43 (172)
T PRK05057 12 PMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT 43 (172)
T ss_pred CCCcCHHHHHHHHHHHcCCcEEECCchHHHHh
Confidence 68999999999999999999999998776643
No 86
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.80 E-value=1.1e-07 Score=65.75 Aligned_cols=31 Identities=32% Similarity=0.621 Sum_probs=29.2
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREE 31 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~ 31 (153)
|+||||||+++.|++++++.+++.+++++..
T Consensus 10 ~~GsGKst~~~~la~~~~~~~~~~g~~~r~~ 40 (217)
T TIGR00017 10 PSGAGKSTVAKAVAEKLGYAYLDSGAMYRAI 40 (217)
T ss_pred CCCCCHHHHHHHHHHHhCCceeeCchHHHHH
Confidence 7899999999999999999999999998874
No 87
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=98.78 E-value=1.4e-07 Score=64.02 Aligned_cols=18 Identities=33% Similarity=0.318 Sum_probs=16.7
Q ss_pred CCCCChHHHHHHHHHHhC
Q psy11030 1 GPGSGKGTQAEKIVQKYG 18 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~ 18 (153)
++||||||+++.|+++++
T Consensus 11 ~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 11 IDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 689999999999999984
No 88
>PRK13975 thymidylate kinase; Provisional
Probab=98.77 E-value=1.5e-07 Score=64.03 Aligned_cols=19 Identities=42% Similarity=0.440 Sum_probs=17.7
Q ss_pred CCCCChHHHHHHHHHHhCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGY 19 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~ 19 (153)
++||||||+++.|+++++.
T Consensus 10 ~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 10 IDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred CCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999984
No 89
>PRK00698 tmk thymidylate kinase; Validated
Probab=98.75 E-value=2e-08 Score=68.65 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=17.1
Q ss_pred CCCCeEEEeecCcchhh-hc
Q psy11030 134 NSPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 134 ~~~~~vi~l~~~~~~~~-~l 152 (153)
+.||++|++++|+++++ ||
T Consensus 126 ~~pd~~i~l~~~~~~~~~Rl 145 (205)
T PRK00698 126 FRPDLTLYLDVPPEVGLARI 145 (205)
T ss_pred CCCCEEEEEeCCHHHHHHHH
Confidence 57999999999999988 76
No 90
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.75 E-value=6.6e-08 Score=65.61 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=19.2
Q ss_pred CCCCChHHHHHHHHHHh---CCceec
Q psy11030 1 GPGSGKGTQAEKIVQKY---GYTHIS 23 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~---~~~~i~ 23 (153)
|+||||||+++.|++++ |+.++.
T Consensus 8 ~~GsGKtT~~~~L~~~l~~~g~~v~~ 33 (200)
T cd01672 8 IDGAGKTTLIELLAERLEARGYEVVL 33 (200)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 68999999999999998 555443
No 91
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=98.75 E-value=1.7e-08 Score=66.81 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=24.7
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDL 27 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l 27 (153)
||||||||+++.|+..+|..+++.|.+
T Consensus 3 ~sGsGKSTla~~la~~l~~~~~~~d~~ 29 (163)
T PRK11545 3 VSGSGKSAVASEVAHQLHAAFLDGDFL 29 (163)
T ss_pred CCCCcHHHHHHHHHHHhCCeEEeCccC
Confidence 699999999999999999999988665
No 92
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.74 E-value=7.7e-08 Score=73.93 Aligned_cols=31 Identities=29% Similarity=0.505 Sum_probs=29.6
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREE 31 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~ 31 (153)
|+||||||+|+.|+++||+.+++.|+++|..
T Consensus 292 ~sgsGKst~a~~la~~l~~~~~d~g~~YR~~ 322 (512)
T PRK13477 292 PAGAGKSTVTRAVAKKLGLLYLDTGAMYRAV 322 (512)
T ss_pred CCCCCHHHHHHHHHHHcCCeEecCCceehHH
Confidence 7999999999999999999999999999984
No 93
>PRK13976 thymidylate kinase; Provisional
Probab=98.73 E-value=2.2e-07 Score=63.93 Aligned_cols=19 Identities=5% Similarity=0.036 Sum_probs=16.9
Q ss_pred CCCCeEEEeecCcchhh-hc
Q psy11030 134 NSPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 134 ~~~~~vi~l~~~~~~~~-~l 152 (153)
+.||++|+|++|+++.. |+
T Consensus 123 ~~PDl~i~Ldv~~e~a~~Ri 142 (209)
T PRK13976 123 KYPDITFVLDIDIELSLSRA 142 (209)
T ss_pred CCCCEEEEEeCCHHHHHHHh
Confidence 47999999999999988 75
No 94
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=98.72 E-value=2.5e-07 Score=65.36 Aligned_cols=93 Identities=16% Similarity=0.184 Sum_probs=50.8
Q ss_pred CCCCChHHHHHHHHHHh---C--CceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcE
Q psy11030 1 GPGSGKGTQAEKIVQKY---G--YTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGY 75 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~---~--~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 75 (153)
+|||||||+|+.|++.+ + +.+++. |.++..+..... ..... ..+.....+......+..+
T Consensus 7 ~pGSGKST~a~~La~~l~~~~~~v~~i~~-D~lr~~~~~~~~---~~e~~-----------~~~~~~~~i~~~l~~~~~V 71 (249)
T TIGR03574 7 LPGVGKSTFSKELAKKLSEKNIDVIILGT-DLIRESFPVWKE---KYEEF-----------IRDSTLYLIKTALKNKYSV 71 (249)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCceEEEcc-HHHHHHhHHhhH---HhHHH-----------HHHHHHHHHHHHHhCCCeE
Confidence 69999999999999987 3 345555 445543311000 01111 1111222233332334568
Q ss_pred eecCCccchhhhhhhh----hh---------hhhHHHHHHHHhhcC
Q psy11030 76 LIDGYPREKAQGEQFE----RE---------DVVMELLGEKVLKEL 108 (153)
Q Consensus 76 ildg~p~~~~q~~~~~----~~---------~~~~~~l~~Rl~~R~ 108 (153)
|+|+.+........+. .. .+|.+++.+|...|.
T Consensus 72 I~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~ 117 (249)
T TIGR03574 72 IVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERG 117 (249)
T ss_pred EEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCC
Confidence 8998653322211111 10 889999999998774
No 95
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.71 E-value=1e-08 Score=70.51 Aligned_cols=29 Identities=34% Similarity=0.532 Sum_probs=24.2
Q ss_pred CCCCChHHHHHHHHHHhC---CceechhHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYG---YTHISTGDLLR 29 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~---~~~i~~~~l~~ 29 (153)
|+||||||+++.|++.++ +.+++.|+++.
T Consensus 14 ~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~ 45 (209)
T PRK05480 14 GSGSGKTTVASTIYEELGDESIAVIPQDSYYK 45 (209)
T ss_pred CCCCCHHHHHHHHHHHhCCCceEEEeCCcccc
Confidence 689999999999999983 56678887754
No 96
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.69 E-value=9.4e-08 Score=73.73 Aligned_cols=81 Identities=20% Similarity=0.208 Sum_probs=58.0
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
+|||||||+|+.++...|+.+++.|.+-. .. .+...+......+..+|+|..
T Consensus 377 ~pGSGKST~A~~l~~~~g~~~vn~D~lg~------------~~----------------~~~~~a~~~L~~G~sVVIDaT 428 (526)
T TIGR01663 377 FPGAGKSHFCKKFFQPAGYKHVNADTLGS------------TQ----------------NCLTACERALDQGKRCAIDNT 428 (526)
T ss_pred CCCCCHHHHHHHHHHHcCCeEECcHHHHH------------HH----------------HHHHHHHHHHhCCCcEEEECC
Confidence 59999999999999999999999987511 01 111223333355688999997
Q ss_pred ccchhhhhhhhhh-------------hhhHHHHHHHHhhcCC
Q psy11030 81 PREKAQGEQFERE-------------DVVMELLGEKVLKELP 109 (153)
Q Consensus 81 p~~~~q~~~~~~~-------------~~~~~~l~~Rl~~R~~ 109 (153)
.....+...+... .+|.+++..|+..|..
T Consensus 429 n~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~ 470 (526)
T TIGR01663 429 NPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFREL 470 (526)
T ss_pred CCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhhcc
Confidence 7666554433332 8899999999998864
No 97
>PRK12338 hypothetical protein; Provisional
Probab=98.68 E-value=9.8e-08 Score=69.17 Aligned_cols=111 Identities=19% Similarity=0.280 Sum_probs=63.8
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcC--CcchhH-----HHH--HHHcCC-CCC------------HHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSG--SARGAD-----LSK--VMKDGG-LVS------------TDVVM 58 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~--~~~g~~-----~~~--~~~~~~-~~~------------~~~~~ 58 (153)
+|||||||+|+.||+++|+.++..+|.+++.+..- .+.-.. ... .+.... ..+ .+.+.
T Consensus 12 ~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~~i~~gf~~q~~~V~ 91 (319)
T PRK12338 12 ASGIGKSTIASELARTLNIKHLIETDFIREVVRGIIGKEYAPALHKSSYNAYTALRDKENFKNNEELICAGFEEHASFVI 91 (319)
T ss_pred CCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcCCCCcccCchhhcccHHHHhhcCCcccccchHHHHHHHHHHHHHHHH
Confidence 59999999999999999999998889999977541 111111 111 111111 111 12222
Q ss_pred HHHHHHHhhhCCCCCcEeecCCccchhhhh--hhhh---h-----hhhHHHHHHHHhhcCCCC
Q psy11030 59 ELLGEKVLKELPNSKGYLIDGYPREKAQGE--QFER---E-----DVVMELLGEKVLKELPNS 111 (153)
Q Consensus 59 ~~l~~~~~~~~~~~~~~ildg~p~~~~q~~--~~~~---~-----~~~~~~l~~Rl~~R~~~~ 111 (153)
..+...+......+..+|++|.-....... .+.. . ..+++.-.+|+..|....
T Consensus 92 ~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~~~~~~~~~v~~~vl~~dee~h~~Rf~~R~~~~ 154 (319)
T PRK12338 92 PAIEKVIERAVTDSDDIVIEGVHLVPGLIDIEQFEENASIHFFILSADEEVHKERFVKRAMEI 154 (319)
T ss_pred HHHHHHHHHHhcCCCeEEEEeccccHHHHhhhhhcccCceEEEEEECCHHHHHHHHHHhhhcc
Confidence 333333443334567899999633222211 1100 1 667888899999876543
No 98
>PRK06696 uridine kinase; Validated
Probab=98.68 E-value=4.8e-08 Score=67.90 Aligned_cols=30 Identities=27% Similarity=0.298 Sum_probs=24.2
Q ss_pred CCCCChHHHHHHHHHHh---CCce--echhHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKY---GYTH--ISTGDLLRE 30 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~---~~~~--i~~~~l~~~ 30 (153)
+|||||||+|+.|++.+ |..+ +++|+++..
T Consensus 30 ~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~ 64 (223)
T PRK06696 30 ITASGKTTFADELAEEIKKRGRPVIRASIDDFHNP 64 (223)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCC
Confidence 68999999999999999 5444 558887754
No 99
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=98.66 E-value=4.4e-07 Score=62.93 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=18.5
Q ss_pred CCCChHHHHHHHHHHhCCcee
Q psy11030 2 PGSGKGTQAEKIVQKYGYTHI 22 (153)
Q Consensus 2 pGsGKst~a~~L~~~~~~~~i 22 (153)
-||||||+++.|+++++..++
T Consensus 8 ~GsGKSTl~~~L~~~l~~~~~ 28 (219)
T cd02030 8 IASGKGKLAKELAEKLGMKYF 28 (219)
T ss_pred CCCCHHHHHHHHHHHhCCCee
Confidence 599999999999999987554
No 100
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=98.66 E-value=4.6e-07 Score=59.36 Aligned_cols=111 Identities=21% Similarity=0.278 Sum_probs=65.2
Q ss_pred CCCChHHHHHHHHHHh-CCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 2 PGSGKGTQAEKIVQKY-GYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 2 pGsGKst~a~~L~~~~-~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
||+||||+++...+.+ .+.+++.++++-+......- ....+.++ .+|.+...++...+..........+|+|.|
T Consensus 13 pGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~gl--ve~rD~~R---klp~e~Q~~lq~~Aa~rI~~~~~~iivDtH 87 (189)
T COG2019 13 PGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKGL--VEHRDEMR---KLPLENQRELQAEAAKRIAEMALEIIVDTH 87 (189)
T ss_pred CCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhCC--cccHHHHh---cCCHHHHHHHHHHHHHHHHHhhhceEEecc
Confidence 8999999999999999 88889999998775543110 01112222 345554444444444443222333899988
Q ss_pred ccchhhhhhhhhhhhhHHHHHHHHhhcCCCCcceeecCCCCCchHHHHHHHHhCCCCeEEEeecCcchhh
Q psy11030 81 PREKAQGEQFEREDVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQFEREINSPTGIVYFEVPDDVMT 150 (153)
Q Consensus 81 p~~~~q~~~~~~~~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~vi~l~~~~~~~~ 150 (153)
-.. +.-.|| +.|.|. +.+++ .+||.++.++.+++++.
T Consensus 88 ~~I-------------------------kTP~Gy-lpgLP~-----~Vl~~--l~pd~ivllEaDp~~Il 124 (189)
T COG2019 88 ATI-------------------------KTPAGY-LPGLPS-----WVLEE--LNPDVIVLLEADPEEIL 124 (189)
T ss_pred cee-------------------------cCCCcc-CCCCcH-----HHHHh--cCCCEEEEEeCCHHHHH
Confidence 221 111112 235554 23332 48888888888877766
No 101
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=98.65 E-value=1.6e-07 Score=62.63 Aligned_cols=106 Identities=11% Similarity=0.094 Sum_probs=56.5
Q ss_pred CCCCChHHHHHHHHHHhC--CceechhHHHHHHHhcC--CcchhHHHHHHHcCC--CCCHHHHHHHHHHHHhhhCCCCCc
Q psy11030 1 GPGSGKGTQAEKIVQKYG--YTHISTGDLLREEVNSG--SARGADLSKVMKDGG--LVSTDVVMELLGEKVLKELPNSKG 74 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~--~~~i~~~~l~~~~~~~~--~~~g~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~ 74 (153)
||.|||||+|+.|++.+. +.|+++|.++....... ...|-... ..+. ......+...+...+......+.+
T Consensus 9 ~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~iaa~a~aG~~ 85 (174)
T PF07931_consen 9 PSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLEPA---GDRPDGGPLFRRLYAAMHAAIAAMARAGNN 85 (174)
T ss_dssp -TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEE---TTSEEE-HHHHHHHHHHHHHHHHHHHTT-E
T ss_pred CCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCcccccc---ccCCchhHHHHHHHHHHHHHHHHHHhCCCC
Confidence 688999999999999996 45788988877532211 00000000 0000 000112233344555544456789
Q ss_pred EeecCCccchhh-hhhhhh----h-------hhhHHHHHHHHhhcCC
Q psy11030 75 YLIDGYPREKAQ-GEQFER----E-------DVVMELLGEKVLKELP 109 (153)
Q Consensus 75 ~ildg~p~~~~q-~~~~~~----~-------~~~~~~l~~Rl~~R~~ 109 (153)
+|+|+....... .+.+.. . .||.+++.+|-..|..
T Consensus 86 VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~RgD 132 (174)
T PF07931_consen 86 VIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARGD 132 (174)
T ss_dssp EEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHTS
T ss_pred EEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcCC
Confidence 999976544332 222211 1 9999999999999963
No 102
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=98.64 E-value=3.6e-07 Score=67.00 Aligned_cols=143 Identities=14% Similarity=0.173 Sum_probs=77.6
Q ss_pred CCCCChHHHHHHHHHHhC------CceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCc
Q psy11030 1 GPGSGKGTQAEKIVQKYG------YTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKG 74 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~------~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 74 (153)
+|||||||+++.|+..+. +.+++.|+++....... ..|..+...+. .....+.+.+...+... ++|
T Consensus 7 l~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~-~~~~~~~~~~k----~~R~~i~~~le~~v~a~---~~g 78 (340)
T TIGR03575 7 LPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFEL-DQSREIPSQWK----QFRQELLKYLEHFLVAV---ING 78 (340)
T ss_pred CCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhh-hcCCCcHHHHH----HHHHHHHHHHHHHHHHh---cCc
Confidence 599999999999998775 34899999996533221 11111111110 00133444444333332 345
Q ss_pred EeecCCccchhhh------hhhhhh------hhhHHHHHHHHhhcCCCCc-ceeec-CCCCCchHHH--HHHHHhCCCCe
Q psy11030 75 YLIDGYPREKAQG------EQFERE------DVVMELLGEKVLKELPNSK-GYLID-GYPREKAQGE--QFEREINSPTG 138 (153)
Q Consensus 75 ~ildg~p~~~~q~------~~~~~~------~~~~~~l~~Rl~~R~~~~~-~~~~d-g~~~~~~~~~--~~~~~~~~~~~ 138 (153)
..+...|. ..+. ..+... +++.+....|+..+..+.. -.++| .|.......+ .+.+....+-+
T Consensus 79 ~~~~~~~~-~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~LsrpllvilDd~fy~ks~Ryel~~LAr~~~~~~~ 157 (340)
T TIGR03575 79 SELSAPPG-KTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSRPLCLVLDDNFYYQSMRYEVYQLARKYSLGFC 157 (340)
T ss_pred ccccCCcc-cchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHhCCCCceecCCCCCHHHHHHHHHHHHHhCCCEE
Confidence 44432211 1111 222211 7899999999987543332 23444 3444322223 34455555668
Q ss_pred EEEeecCcchhh-hc
Q psy11030 139 IVYFEVPDDVMT-IL 152 (153)
Q Consensus 139 vi~l~~~~~~~~-~l 152 (153)
+|++++|.+++. |.
T Consensus 158 ~V~ld~ple~~l~RN 172 (340)
T TIGR03575 158 QLFLDCPVESCLLRN 172 (340)
T ss_pred EEEEeCCHHHHHHHH
Confidence 999999999887 64
No 103
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=98.63 E-value=4.6e-08 Score=66.06 Aligned_cols=25 Identities=12% Similarity=0.328 Sum_probs=18.7
Q ss_pred HHHHHhC--CCCeEEEeecCcchhh-hc
Q psy11030 128 QFEREIN--SPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 128 ~~~~~~~--~~~~vi~l~~~~~~~~-~l 152 (153)
.+...+. .||++++|++++++.. |+
T Consensus 109 ~~~~~~~~~~PDl~~~Ldv~pe~~~~R~ 136 (186)
T PF02223_consen 109 RLNKDIFLPKPDLTFFLDVDPEEALKRI 136 (186)
T ss_dssp HHHHHHHTTE-SEEEEEECCHHHHHHHH
T ss_pred HHHHHhcCCCCCEEEEEecCHHHHHHHH
Confidence 3444444 8999999999999988 75
No 104
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=98.60 E-value=4.4e-07 Score=61.58 Aligned_cols=22 Identities=32% Similarity=0.637 Sum_probs=19.0
Q ss_pred CCCCChHHHHHHHHHHhCCcee
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHI 22 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i 22 (153)
++||||||+++.|++++++.++
T Consensus 7 ~~GsGKSTl~~~L~~~~~~~~~ 28 (193)
T cd01673 7 NIGAGKSTLAKELAEHLGYEVV 28 (193)
T ss_pred CCCCCHHHHHHHHHHHhCCccc
Confidence 5899999999999998887554
No 105
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.59 E-value=1.1e-07 Score=64.31 Aligned_cols=30 Identities=23% Similarity=0.262 Sum_probs=27.3
Q ss_pred CCCCChHHHHHHHHHHh-CCceechhHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKY-GYTHISTGDLLRE 30 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~-~~~~i~~~~l~~~ 30 (153)
+|||||||+|+.|++.+ ++.+++.|++...
T Consensus 7 ~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~ 37 (187)
T cd02024 7 VTNSGKTTLAKLLQRILPNCCVIHQDDFFKP 37 (187)
T ss_pred CCCCCHHHHHHHHHHHcCCCeEEccccccCC
Confidence 58999999999999999 6999999998865
No 106
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=98.58 E-value=1.9e-08 Score=67.90 Aligned_cols=139 Identities=15% Similarity=0.111 Sum_probs=69.7
Q ss_pred CCCCChHHHHHHHHHHh--CC--ceechhHHHHHHHhcCCcch----hHHHHHHHcCCCCCHHHHHH----HHHHHHhhh
Q psy11030 1 GPGSGKGTQAEKIVQKY--GY--THISTGDLLREEVNSGSARG----ADLSKVMKDGGLVSTDVVME----LLGEKVLKE 68 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~--~~--~~i~~~~l~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~ 68 (153)
|+||||+|+++.|.+++ ++ .+..+..-.|.-...+.+.. ......+..|..++...... .-...+...
T Consensus 10 psg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt~~~~i~~~ 89 (184)
T smart00072 10 PSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGTSKETIRQV 89 (184)
T ss_pred CCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCcccCHHHHHHH
Confidence 89999999999999985 22 22222222221111111111 33344444444433111000 011122222
Q ss_pred CCCCCcEeecCCccchhhhhhhhhh-------hhhHHHHHHHHhhcCCCCcceeecCCCCCchHHHHHHHHhCCCCeEEE
Q psy11030 69 LPNSKGYLIDGYPREKAQGEQFERE-------DVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQFEREINSPTGIVY 141 (153)
Q Consensus 69 ~~~~~~~ildg~p~~~~q~~~~~~~-------~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~vi~ 141 (153)
...+..+|+|..|....+....... -.+.+++.+|+..|...+..-+ .+-...+..........|.+|.
T Consensus 90 ~~~~~~~ild~~~~~~~~l~~~~~~~~vIfi~~~s~~~l~~rl~~R~~~~~~~i----~~rl~~a~~~~~~~~~fd~~I~ 165 (184)
T smart00072 90 AEQGKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPSSEELERRLRGRGTETAERI----QKRLAAAQKEAQEYHLFDYVIV 165 (184)
T ss_pred HHcCCeEEEEECHHHHHHHHHhCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHH----HHHHHHHHHHHhhhccCCEEEE
Confidence 2346789999998887776543222 3567789999998854331111 1111122222222235889998
Q ss_pred ee
Q psy11030 142 FE 143 (153)
Q Consensus 142 l~ 143 (153)
++
T Consensus 166 n~ 167 (184)
T smart00072 166 ND 167 (184)
T ss_pred Cc
Confidence 87
No 107
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.58 E-value=5.3e-07 Score=60.34 Aligned_cols=30 Identities=30% Similarity=0.367 Sum_probs=22.5
Q ss_pred CCCCChHHHHHHHHHHhC-----CceechhHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYG-----YTHISTGDLLREE 31 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~-----~~~i~~~~l~~~~ 31 (153)
+|||||||+|+.|+++++ ..+++.+. +++.
T Consensus 15 ~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~-~r~~ 49 (176)
T PRK05541 15 LAGSGKTTIAKALYERLKLKYSNVIYLDGDE-LREI 49 (176)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEEecHH-HHhh
Confidence 689999999999999985 45565444 4443
No 108
>PRK07933 thymidylate kinase; Validated
Probab=98.56 E-value=4.9e-07 Score=62.45 Aligned_cols=19 Identities=21% Similarity=0.289 Sum_probs=16.8
Q ss_pred CCCCeEEEeecCcchhh-hc
Q psy11030 134 NSPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 134 ~~~~~vi~l~~~~~~~~-~l 152 (153)
+.||++|+||+|++++. |+
T Consensus 131 ~~PDl~i~Ldv~~e~a~~Ri 150 (213)
T PRK07933 131 PVPDLQVLLDVPVELAAERA 150 (213)
T ss_pred CCCCEEEEecCCHHHHHHHH
Confidence 47999999999999988 75
No 109
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.56 E-value=1.1e-07 Score=64.23 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=21.8
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLL 28 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~ 28 (153)
|+||||||+++.|+..++..++..+..+
T Consensus 10 ~sGsGKsTl~~~l~~~~~~~~~~~~~~~ 37 (186)
T PRK10078 10 PSGSGKDSLLAALRQREQTQLLVAHRYI 37 (186)
T ss_pred CCCCCHHHHHHHHhccCCCeEEEcCEEC
Confidence 7999999999999998776655544433
No 110
>KOG3327|consensus
Probab=98.55 E-value=2.1e-07 Score=61.79 Aligned_cols=118 Identities=15% Similarity=0.214 Sum_probs=74.8
Q ss_pred CCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHH-------HHHhhhCCCCCcE
Q psy11030 3 GSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLG-------EKVLKELPNSKGY 75 (153)
Q Consensus 3 GsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~~~~~~ 75 (153)
+|||||+|..|...+. +..+ ...+...-...+..|+.+..++++....++..++-++. ..+.+....+-.+
T Consensus 15 rsgKstQ~~~l~~~l~-~~~~-~~~l~~FP~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnRwe~~~~i~e~l~kg~~~ 92 (208)
T KOG3327|consen 15 RSGKSTQCGKLVESLI-PGLD-PAELLRFPERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANRWEHVSLIKEKLAKGTTL 92 (208)
T ss_pred cCCceeehhHHHHHHH-hccC-hHHhhhcchhcccccHHHHHHHHhccCCcHHHHHHHhccchhhHHHHHHHHHhcCCeE
Confidence 6999999999999873 2222 23333334456788999999999888888887666553 2333333445567
Q ss_pred eecCCccchhhhhhhhhhhhhHHHHHHHHhhcCCCCcceee-cCCCCCchHHHHHHHHhCCCCeEEEeecCcchhhh
Q psy11030 76 LIDGYPREKAQGEQFEREDVVMELLGEKVLKELPNSKGYLI-DGYPREKAQGEQFEREINSPTGIVYFEVPDDVMTI 151 (153)
Q Consensus 76 ildg~p~~~~q~~~~~~~~~~~~~l~~Rl~~R~~~~~~~~~-dg~~~~~~~~~~~~~~~~~~~~vi~l~~~~~~~~~ 151 (153)
|+|.+- .+.-.|.. -|++. .+-..++..++.||+|++|+++++++.+
T Consensus 93 ivDRY~---------------------------~SGvAyS~AKgl~~--dWc~~pd~gL~KPDlvlfL~v~p~~~a~ 140 (208)
T KOG3327|consen 93 IVDRYS---------------------------FSGVAYSAAKGLDL--DWCKQPDVGLPKPDLVLFLDVSPEDAAR 140 (208)
T ss_pred EEecce---------------------------ecchhhhhhcCCCc--chhhCCccCCCCCCeEEEEeCCHHHHHH
Confidence 887761 11110100 13222 2333456677899999999999998763
No 111
>PRK07667 uridine kinase; Provisional
Probab=98.53 E-value=2.7e-07 Score=62.79 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=26.7
Q ss_pred CCCCChHHHHHHHHHHhC-----CceechhHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYG-----YTHISTGDLLREEV 32 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~-----~~~i~~~~l~~~~~ 32 (153)
+|||||||+|+.|++.++ ..+++.|+++....
T Consensus 25 ~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~ 61 (193)
T PRK07667 25 LSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERN 61 (193)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhh
Confidence 689999999999999873 45889999877644
No 112
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=98.49 E-value=1.7e-06 Score=56.52 Aligned_cols=29 Identities=34% Similarity=0.432 Sum_probs=21.5
Q ss_pred CCCCChHHHHHHHHHHh---CCc--eechhHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKY---GYT--HISTGDLLRE 30 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~---~~~--~i~~~~l~~~ 30 (153)
+|||||||+|+.|++.+ +.. +++. +-+++
T Consensus 7 ~~GsGKSTla~~L~~~l~~~g~~~~~i~~-d~~r~ 40 (149)
T cd02027 7 LSGSGKSTIARALEEKLFQRGRPVYVLDG-DNVRH 40 (149)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEcC-HHHHH
Confidence 58999999999999998 543 4444 44444
No 113
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=98.48 E-value=1.4e-06 Score=57.03 Aligned_cols=27 Identities=26% Similarity=0.518 Sum_probs=24.9
Q ss_pred CCCCChHHHHHHHHHHhC-CceechhHH
Q psy11030 1 GPGSGKGTQAEKIVQKYG-YTHISTGDL 27 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~-~~~i~~~~l 27 (153)
.+||||||+|..|++-|| ..|+..|++
T Consensus 7 tiGCGKTTva~aL~~LFg~wgHvQnDnI 34 (168)
T PF08303_consen 7 TIGCGKTTVALALSNLFGEWGHVQNDNI 34 (168)
T ss_pred CCCcCHHHHHHHHHHHcCCCCccccCCC
Confidence 479999999999999999 999998886
No 114
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.46 E-value=5.3e-07 Score=61.47 Aligned_cols=30 Identities=37% Similarity=0.565 Sum_probs=25.6
Q ss_pred CCCCChHHHHHHHHHHh---CCceechhHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKY---GYTHISTGDLLRE 30 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~---~~~~i~~~~l~~~ 30 (153)
|+||||||+++.|+..+ ++.+++.|++...
T Consensus 7 ~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~ 39 (198)
T cd02023 7 GSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKD 39 (198)
T ss_pred CCCCCHHHHHHHHHHHhCCCCeEEEEecccccc
Confidence 79999999999999987 4678899887644
No 115
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.45 E-value=1.1e-06 Score=58.93 Aligned_cols=28 Identities=32% Similarity=0.385 Sum_probs=24.9
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLL 28 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~ 28 (153)
|+||||||+++.|+..++..+++.+++.
T Consensus 11 ~sGsGKSTl~~~la~~l~~~~i~gd~~~ 38 (176)
T PRK09825 11 VSGSGKSLIGSKIAALFSAKFIDGDDLH 38 (176)
T ss_pred CCCCCHHHHHHHHHHhcCCEEECCcccC
Confidence 6899999999999999998888887753
No 116
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.45 E-value=1.9e-07 Score=64.20 Aligned_cols=29 Identities=41% Similarity=0.604 Sum_probs=23.9
Q ss_pred CCCCChHHHHHHHHHHhC---CceechhHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYG---YTHISTGDLLR 29 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~---~~~i~~~~l~~ 29 (153)
|+||||||+++.|+..++ +.+++.|+.+.
T Consensus 14 ~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~ 45 (207)
T TIGR00235 14 GSGSGKTTVARKIYEQLGKLEIVIISQDNYYK 45 (207)
T ss_pred CCCCCHHHHHHHHHHHhcccCCeEeccccccc
Confidence 689999999999999885 56778777643
No 117
>PTZ00301 uridine kinase; Provisional
Probab=98.39 E-value=2.4e-07 Score=63.79 Aligned_cols=30 Identities=27% Similarity=0.336 Sum_probs=22.9
Q ss_pred CCCCChHHHHHHHHHHhC-------CceechhHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYG-------YTHISTGDLLRE 30 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~-------~~~i~~~~l~~~ 30 (153)
||||||||+|+.|+++++ ..+++.|++.+.
T Consensus 11 ~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~ 47 (210)
T PTZ00301 11 ASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRD 47 (210)
T ss_pred CCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccC
Confidence 799999999999988762 235677776654
No 118
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.39 E-value=3.2e-07 Score=63.90 Aligned_cols=32 Identities=38% Similarity=0.636 Sum_probs=29.6
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEV 32 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~ 32 (153)
||||||||+|+.|+++||+.+++.+.++|...
T Consensus 12 ~~gsGksti~~~la~~~~~~~~~~~~~~r~~~ 43 (225)
T PRK00023 12 PAGSGKGTVAKILAKKLGFHYLDTGAMYRAVA 43 (225)
T ss_pred CCCCCHHHHHHHHHHHhCCCcccCchhHHHHH
Confidence 68999999999999999999999999988743
No 119
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.34 E-value=4.6e-07 Score=62.13 Aligned_cols=30 Identities=37% Similarity=0.598 Sum_probs=26.0
Q ss_pred CCCCChHHHHHHHHHHhCCc---eechhHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYT---HISTGDLLRE 30 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~---~i~~~~l~~~ 30 (153)
++||||||+|+.|++.|+.. .++.|++.+.
T Consensus 16 ~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~ 48 (218)
T COG0572 16 GSGSGKTTVAKELSEQLGVEKVVVISLDDYYKD 48 (218)
T ss_pred CCCCCHHHHHHHHHHHhCcCcceEeeccccccc
Confidence 68999999999999999854 7788888775
No 120
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.33 E-value=7.6e-07 Score=60.83 Aligned_cols=101 Identities=19% Similarity=0.227 Sum_probs=49.1
Q ss_pred CCCCChHHHHHHHHHHh---CCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCH----HHHHHHHHHHHhhhCCCCC
Q psy11030 1 GPGSGKGTQAEKIVQKY---GYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVST----DVVMELLGEKVLKELPNSK 73 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~---~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~ 73 (153)
+|||||||++..+...+ ++.+|+.|++-... +....+.. .+..... .....+....+........
T Consensus 23 ~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~-----p~~~~~~~---~~~~~~~~~~~~~a~~~~~~~~~~a~~~~~ 94 (199)
T PF06414_consen 23 QPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH-----PDYDELLK---ADPDEASELTQKEASRLAEKLIEYAIENRY 94 (199)
T ss_dssp -TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS-----TTHHHHHH---HHCCCTHHHHHHHHHHHHHHHHHHHHHCT-
T ss_pred CCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc-----cchhhhhh---hhhhhhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 69999999999999987 67889987753321 11111111 0111110 1111111222222223457
Q ss_pred cEeecCCccchhhhh----hhhhh---------hhhHHHHHHHHhhcCC
Q psy11030 74 GYLIDGYPREKAQGE----QFERE---------DVVMELLGEKVLKELP 109 (153)
Q Consensus 74 ~~ildg~p~~~~q~~----~~~~~---------~~~~~~l~~Rl~~R~~ 109 (153)
++|+|+..+...... .+... .+|++.-+.|+.+|..
T Consensus 95 nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~s~~rv~~R~~ 143 (199)
T PF06414_consen 95 NIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPELSIERVRQRYE 143 (199)
T ss_dssp -EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---HHHHHHHHHHHHH
T ss_pred CEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCHHHHHHHHHHHHH
Confidence 999998766544443 22222 7889999999988853
No 121
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=98.31 E-value=3e-06 Score=57.64 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=19.5
Q ss_pred CCCCChHHHHHHHHHHhCCcee
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHI 22 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i 22 (153)
|-|+||||+|+.||++++..++
T Consensus 12 ~IG~GKSTLa~~La~~l~~~~~ 33 (216)
T COG1428 12 MIGAGKSTLAQALAEHLGFKVF 33 (216)
T ss_pred ccccCHHHHHHHHHHHhCCcee
Confidence 4699999999999999997665
No 122
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.31 E-value=3.8e-06 Score=60.53 Aligned_cols=111 Identities=15% Similarity=0.073 Sum_probs=60.6
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhc--CCcchhHHH----HHHH--cCCCCCH-----------HHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNS--GSARGADLS----KVMK--DGGLVST-----------DVVMELL 61 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~--~~~~g~~~~----~~~~--~~~~~~~-----------~~~~~~l 61 (153)
++||||||+|..|+++||+.++-..|.+++.+.. ..+..+.+. ..+. .+...++ +.+...+
T Consensus 100 ~sgsGKStlA~~La~~l~~~~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~l~g~~~~~~~v~~gi 179 (301)
T PRK04220 100 ASGVGTSTIAFELASRLGIRSVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPVIYGFERHVEPVSVGV 179 (301)
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhhhhhHHHHHHHHHHHH
Confidence 6899999999999999999855446777766643 111111111 1111 0011111 1222223
Q ss_pred HHHHhhhCCCCCcEeecCCccchhhhhhhhhh----------hhhHHHHHHHHhhcCCCC
Q psy11030 62 GEKVLKELPNSKGYLIDGYPREKAQGEQFERE----------DVVMELLGEKVLKELPNS 111 (153)
Q Consensus 62 ~~~~~~~~~~~~~~ildg~p~~~~q~~~~~~~----------~~~~~~l~~Rl~~R~~~~ 111 (153)
...+......+...|++|.-........+... --+++...+|+..|....
T Consensus 180 ~~~I~~~~~~g~s~IiEGvhl~P~~i~~~~~~~~~~i~~~l~i~~ee~h~~RF~~R~~~~ 239 (301)
T PRK04220 180 EAVIERALKEGISVIIEGVHIVPGFIKEKYLENPNVFMFVLTLSDEEAHKARFYARARVS 239 (301)
T ss_pred HHHHHHHHHhCCcEEEecCCCCHHHHHHhhhcCCCEEEEEEEECCHHHHHHHHHHHHhhh
Confidence 33444443556889999975444433321111 236688888988875433
No 123
>PLN02348 phosphoribulokinase
Probab=98.28 E-value=2.2e-06 Score=63.73 Aligned_cols=29 Identities=28% Similarity=0.400 Sum_probs=24.3
Q ss_pred CCCCChHHHHHHHHHHhCC--------------------ceechhHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGY--------------------THISTGDLLR 29 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~--------------------~~i~~~~l~~ 29 (153)
+|||||||+|+.|++.|+- .++++|++..
T Consensus 57 ~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~ 105 (395)
T PLN02348 57 DSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHS 105 (395)
T ss_pred CCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccC
Confidence 6899999999999999962 4688888753
No 124
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=98.27 E-value=8.5e-06 Score=63.91 Aligned_cols=31 Identities=26% Similarity=0.297 Sum_probs=25.1
Q ss_pred CCCCChHHHHHHHHHHhCC------ceechhHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGY------THISTGDLLREEV 32 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~------~~i~~~~l~~~~~ 32 (153)
+|||||||+|+.|++.++. .+++.|.+ ++.+
T Consensus 400 l~GSGKSTia~~La~~L~~~~g~~~~~lD~D~v-r~~l 436 (568)
T PRK05537 400 LSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVV-RKHL 436 (568)
T ss_pred CCCChHHHHHHHHHHHhhhccCceEEEeCCcHH-HHhc
Confidence 5899999999999999985 77877654 5544
No 125
>COG4639 Predicted kinase [General function prediction only]
Probab=98.26 E-value=7.4e-06 Score=53.15 Aligned_cols=97 Identities=21% Similarity=0.132 Sum_probs=58.0
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
+|||||||.|+... .....++++++=...- ....... ..-.+..+.+.+...+......++..|+|..
T Consensus 10 ~~~sGKsT~ak~n~--~~~~~lsld~~r~~lg-------~~~~~e~---sqk~~~~~~~~l~~~l~qrl~~Gk~tiidAt 77 (168)
T COG4639 10 ASGSGKSTFAKENF--LQNYVLSLDDLRLLLG-------VSASKEN---SQKNDELVWDILYKQLEQRLRRGKFTIIDAT 77 (168)
T ss_pred CCCCchhHHHHHhC--CCcceecHHHHHHHhh-------hchhhhh---ccccHHHHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 68999999998432 2577888887654421 1111100 0112233445555555555566789999998
Q ss_pred ccchhhhhhhhhh-------------hhhHHHHHHHHhhcCC
Q psy11030 81 PREKAQGEQFERE-------------DVVMELLGEKVLKELP 109 (153)
Q Consensus 81 p~~~~q~~~~~~~-------------~~~~~~l~~Rl~~R~~ 109 (153)
....++...+... +.|.+.|.+|-..|.+
T Consensus 78 n~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~~R 119 (168)
T COG4639 78 NLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLRER 119 (168)
T ss_pred cCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhccch
Confidence 7555544332222 8999999999765543
No 126
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.24 E-value=1.1e-05 Score=54.00 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=22.3
Q ss_pred CCCCChHHHHHHHHHHhC-----CceechhHH
Q psy11030 1 GPGSGKGTQAEKIVQKYG-----YTHISTGDL 27 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~-----~~~i~~~~l 27 (153)
+|||||||+|+.|+..+. +.+++.|.+
T Consensus 12 ~~GsGKST~a~~la~~l~~~g~~v~~id~D~~ 43 (175)
T PRK00889 12 LSGAGKTTIARALAEKLREAGYPVEVLDGDAV 43 (175)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH
Confidence 599999999999999882 566787655
No 127
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.24 E-value=1.4e-05 Score=53.91 Aligned_cols=29 Identities=31% Similarity=0.428 Sum_probs=21.5
Q ss_pred CCCCChHHHHHHHHHHh---C--CceechhHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKY---G--YTHISTGDLLRE 30 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~---~--~~~i~~~~l~~~ 30 (153)
+|||||||+++.|+..+ | ..+++.+. +++
T Consensus 26 ~~GsGKstla~~l~~~l~~~~~~~~~l~~d~-~r~ 59 (184)
T TIGR00455 26 LSGSGKSTIANALEKKLESKGYRVYVLDGDN-VRH 59 (184)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEECChH-HHh
Confidence 58999999999999987 2 34566554 444
No 128
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.23 E-value=3.9e-06 Score=56.28 Aligned_cols=19 Identities=21% Similarity=0.228 Sum_probs=17.0
Q ss_pred CCCCChHHHHHHHHHHhCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGY 19 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~ 19 (153)
||||||||+++.|+..++.
T Consensus 9 ~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 9 PSGAGKDTLLDYARARLAG 27 (179)
T ss_pred CCCCCHHHHHHHHHHHcCc
Confidence 7999999999999998753
No 129
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.22 E-value=4.5e-07 Score=60.80 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=19.2
Q ss_pred CCCCChHHHHHHHHHHhCCceech
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIST 24 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~ 24 (153)
|+||||||+++.|++.++..+++.
T Consensus 9 ~~GsGKsTl~~~L~~~~~~~~~~~ 32 (180)
T TIGR03263 9 PSGVGKSTLVKALLEEDPNLKFSI 32 (180)
T ss_pred CCCCCHHHHHHHHHccCccccccc
Confidence 799999999999999775444443
No 130
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.21 E-value=7e-07 Score=71.77 Aligned_cols=32 Identities=28% Similarity=0.507 Sum_probs=30.1
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEV 32 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~ 32 (153)
||||||||+|+.||+++|+.+++++.++|...
T Consensus 9 ~~GsGKST~ak~la~~l~~~~~~~g~~~r~~~ 40 (712)
T PRK09518 9 PAGVGKSSVSRALAQYLGYAYLDTGAMYRACA 40 (712)
T ss_pred CCCCCHHHHHHHHHHHhCCcEeecCcEeHHHH
Confidence 79999999999999999999999999998853
No 131
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.18 E-value=1.9e-06 Score=59.79 Aligned_cols=29 Identities=24% Similarity=0.239 Sum_probs=23.9
Q ss_pred CCCCChHHHHHHHHHHhC-------CceechhHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYG-------YTHISTGDLLR 29 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~-------~~~i~~~~l~~ 29 (153)
|+||||||+|+.|+..+. +.++++|++..
T Consensus 7 ~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~ 42 (220)
T cd02025 7 SVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLY 42 (220)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccC
Confidence 789999999999999883 45678888753
No 132
>PRK14531 adenylate kinase; Provisional
Probab=98.18 E-value=2.9e-06 Score=57.19 Aligned_cols=43 Identities=40% Similarity=0.672 Sum_probs=36.7
Q ss_pred CCcceeecCCCCCchHHHHHHHHh----CCCCeEEEeecCcchhh-hc
Q psy11030 110 NSKGYLIDGYPREKAQGEQFEREI----NSPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 110 ~~~~~~~dg~~~~~~~~~~~~~~~----~~~~~vi~l~~~~~~~~-~l 152 (153)
...++++||||++..|++.+++.+ ..++.|+++++|++++. ||
T Consensus 78 ~~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl 125 (183)
T PRK14531 78 NSGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERL 125 (183)
T ss_pred cCCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHh
Confidence 357899999999999999876543 36899999999999998 86
No 133
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=98.17 E-value=6.3e-06 Score=65.88 Aligned_cols=31 Identities=35% Similarity=0.613 Sum_probs=29.8
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREE 31 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~ 31 (153)
|+||||||+|+.|+++||+.|+++++++|..
T Consensus 450 ~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~ 480 (661)
T PRK11860 450 PTASGKGTVAARVAEALGYHYLDSGALYRLT 480 (661)
T ss_pred CCCCCHHHHHHHHHHHhCCeEecHHHhhhHH
Confidence 7899999999999999999999999999985
No 134
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.16 E-value=4.7e-06 Score=58.20 Aligned_cols=69 Identities=13% Similarity=0.147 Sum_probs=39.5
Q ss_pred CcEeecCCccchhh-----h-hhhhhh---hhhHHHHHHHHhhcCCCCcceeecCCCCCchH----------HHHHHHHh
Q psy11030 73 KGYLIDGYPREKAQ-----G-EQFERE---DVVMELLGEKVLKELPNSKGYLIDGYPREKAQ----------GEQFEREI 133 (153)
Q Consensus 73 ~~~ildg~p~~~~q-----~-~~~~~~---~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~----------~~~~~~~~ 133 (153)
.-+|++|....... . ..++.. ++|.+++.+|+..|.... |...+... .+...+..
T Consensus 138 ~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~~~~~~R~~~R~~~~------g~s~~~~~~~~~~~~~~~~~~i~~~~ 211 (229)
T PRK09270 138 RLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAEVLRERLVARKLAG------GLSPEAAEAFVLRNDGPNARLVLETS 211 (229)
T ss_pred CEEEEcCcceeeccccHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhc------CCCHHHHHHHHHhcChHHHHHHHhcC
Confidence 35677887554321 1 112222 999999999999984211 33322211 11123345
Q ss_pred CCCCeEEEeecCcc
Q psy11030 134 NSPTGIVYFEVPDD 147 (153)
Q Consensus 134 ~~~~~vi~l~~~~~ 147 (153)
..+|.||.++.+-+
T Consensus 212 ~~ad~vI~n~~~~~ 225 (229)
T PRK09270 212 RPADLVLEMTATGE 225 (229)
T ss_pred CCCCEEEEecCCcc
Confidence 67999999988743
No 135
>PTZ00088 adenylate kinase 1; Provisional
Probab=98.16 E-value=4.4e-06 Score=58.32 Aligned_cols=54 Identities=20% Similarity=0.420 Sum_probs=42.9
Q ss_pred HHHHHHHhhc-CCCCcceeecCCCCCchHHHHHHHHhCCCCeEEEeecCcchhh-hc
Q psy11030 98 ELLGEKVLKE-LPNSKGYLIDGYPREKAQGEQFEREINSPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 98 ~~l~~Rl~~R-~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~vi~l~~~~~~~~-~l 152 (153)
..+.+++.+- .....+|++|||||+..|++.++.. ..+++||++++|.++++ ||
T Consensus 72 ~lv~~~l~~~~~~~~~g~iLDGfPRt~~Qa~~l~~~-~~~~~vi~l~~~~~~~~~Rl 127 (229)
T PTZ00088 72 AIVKDEIAKVTDDCFKGFILDGFPRNLKQCKELGKI-TNIDLFVNIYLPRNILIKKL 127 (229)
T ss_pred HHHHHHHHhhccccCceEEEecCCCCHHHHHHHHhc-CCCCEEEEEeCCHHHHHHHH
Confidence 3455555531 3445789999999999999998764 58999999999999988 76
No 136
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.15 E-value=2.1e-06 Score=58.07 Aligned_cols=71 Identities=8% Similarity=-0.070 Sum_probs=39.7
Q ss_pred CCCCcEeecCCccchhhhhhhhh---h----hh-hHHHHHHHHhhcCCCCcceeecCCCCCchHHHH-----HHHHhCCC
Q psy11030 70 PNSKGYLIDGYPREKAQGEQFER---E----DV-VMELLGEKVLKELPNSKGYLIDGYPREKAQGEQ-----FEREINSP 136 (153)
Q Consensus 70 ~~~~~~ildg~p~~~~q~~~~~~---~----~~-~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~-----~~~~~~~~ 136 (153)
+.+..+|+|-.+....+...... . .. +.+++.+|+.+|... +....+.+. -.+....+
T Consensus 92 ~~g~~~i~d~~~~g~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~~---------s~e~i~~Rl~~~~~e~~~~~~~ 162 (186)
T PRK14737 92 KEGRSAIMDIDVQGAKIIKEKFPERIVTIFIEPPSEEEWEERLIHRGTD---------SEESIEKRIENGIIELDEANEF 162 (186)
T ss_pred HcCCeEEEEcCHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHHHhhhccC
Confidence 34566777766555444432211 1 33 468999999988532 222222211 12333578
Q ss_pred CeEEEeecCcchhh
Q psy11030 137 TGIVYFEVPDDVMT 150 (153)
Q Consensus 137 ~~vi~l~~~~~~~~ 150 (153)
|.||.|+ +.+.+.
T Consensus 163 D~vI~N~-dle~a~ 175 (186)
T PRK14737 163 DYKIIND-DLEDAI 175 (186)
T ss_pred CEEEECc-CHHHHH
Confidence 9999999 665544
No 137
>PRK14526 adenylate kinase; Provisional
Probab=98.15 E-value=4.1e-06 Score=57.77 Aligned_cols=53 Identities=19% Similarity=0.522 Sum_probs=41.2
Q ss_pred HHHHHHHhhcCCCCcceeecCCCCCchHHHHHHHHhCCCCeEEEeecCcchhh-hc
Q psy11030 98 ELLGEKVLKELPNSKGYLIDGYPREKAQGEQFEREINSPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 98 ~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~vi~l~~~~~~~~-~l 152 (153)
+.+.+++... ....+|++|||||+..|++.++... ....+|++++|+++++ ||
T Consensus 66 ~lv~~~l~~~-~~~~g~ilDGfPR~~~Qa~~l~~~~-~~~~vi~l~~~~~~~~~Rl 119 (211)
T PRK14526 66 KIVEDKINTI-KNNDNFILDGFPRNINQAKALDKFL-PNIKIINFLIDEELLIKRL 119 (211)
T ss_pred HHHHHHHhcc-cccCcEEEECCCCCHHHHHHHHHhc-CCCEEEEEECCHHHHHHHH
Confidence 3455666543 3467899999999999999998854 3357889999999988 86
No 138
>PRK14532 adenylate kinase; Provisional
Probab=98.15 E-value=4.3e-06 Score=56.52 Aligned_cols=54 Identities=22% Similarity=0.486 Sum_probs=41.5
Q ss_pred HHHHHHHhhcCCCCcceeecCCCCCchHHHHHHHHh----CCCCeEEEeecCcchhh-hc
Q psy11030 98 ELLGEKVLKELPNSKGYLIDGYPREKAQGEQFEREI----NSPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 98 ~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~~~~~~----~~~~~vi~l~~~~~~~~-~l 152 (153)
..+.+++.. .....++++||||++..|++.+.+.+ ..||++|++++|++++. ||
T Consensus 66 ~~~~~~~~~-~~~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl 124 (188)
T PRK14532 66 ALIEERLPE-AEAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERI 124 (188)
T ss_pred HHHHHHHhC-cCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHH
Confidence 344445532 34467899999999999999876443 47999999999999988 86
No 139
>PRK07429 phosphoribulokinase; Provisional
Probab=98.14 E-value=1.2e-05 Score=58.89 Aligned_cols=28 Identities=32% Similarity=0.372 Sum_probs=23.9
Q ss_pred CCCCChHHHHHHHHHHhC---CceechhHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYG---YTHISTGDLL 28 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~---~~~i~~~~l~ 28 (153)
++||||||+++.|+..++ ..+++.|++.
T Consensus 16 ~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~ 46 (327)
T PRK07429 16 DSGCGKTTFLRGLADLLGEELVTVICTDDYH 46 (327)
T ss_pred CCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence 589999999999999987 5677888764
No 140
>PHA00729 NTP-binding motif containing protein
Probab=98.14 E-value=1.3e-05 Score=55.59 Aligned_cols=18 Identities=39% Similarity=0.348 Sum_probs=16.6
Q ss_pred CCCCChHHHHHHHHHHhC
Q psy11030 1 GPGSGKGTQAEKIVQKYG 18 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~ 18 (153)
+||+||||+|..|+++++
T Consensus 25 ~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 25 KQGSGKTTYALKVARDVF 42 (226)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 699999999999999875
No 141
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=98.14 E-value=2.7e-06 Score=69.23 Aligned_cols=32 Identities=25% Similarity=0.433 Sum_probs=30.5
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEV 32 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~ 32 (153)
||||||||+|+.||++|++.+++++.++|...
T Consensus 42 ~~gsGKst~~~~la~~l~~~~~~~g~~yRa~a 73 (863)
T PRK12269 42 PAGSGKSSVCRLLASRLGAQCLNTGSFYRAFT 73 (863)
T ss_pred CCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHH
Confidence 79999999999999999999999999999964
No 142
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.12 E-value=2.5e-05 Score=53.21 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=19.6
Q ss_pred CCCCChHHHHHHHHHHh---CCceechh
Q psy11030 1 GPGSGKGTQAEKIVQKY---GYTHISTG 25 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~---~~~~i~~~ 25 (153)
+|||||||.|+.|++.+ +...++.+
T Consensus 9 yPgsGKTtfakeLak~L~~~i~~vi~l~ 36 (261)
T COG4088 9 YPGSGKTTFAKELAKELRQEIWRVIHLE 36 (261)
T ss_pred CCCCCchHHHHHHHHHHHHhhhhccccc
Confidence 69999999999999988 34444443
No 143
>PRK00279 adk adenylate kinase; Reviewed
Probab=98.11 E-value=8e-06 Score=56.47 Aligned_cols=54 Identities=26% Similarity=0.566 Sum_probs=41.6
Q ss_pred HHHHHHHhhcCCCCcceeecCCCCCchHHHHHHHHh----CCCCeEEEeecCcchhh-hc
Q psy11030 98 ELLGEKVLKELPNSKGYLIDGYPREKAQGEQFEREI----NSPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 98 ~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~~~~~~----~~~~~vi~l~~~~~~~~-~l 152 (153)
+.+.+++.+. ....+|++||||++..|++.+++.+ ..++.||++++|++.++ ||
T Consensus 66 ~~i~~~l~~~-~~~~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl 124 (215)
T PRK00279 66 GLVKERLAQP-DCKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERL 124 (215)
T ss_pred HHHHHHHhcc-CccCCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHH
Confidence 4445555542 2345899999999999999986543 36899999999999988 76
No 144
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=98.10 E-value=7.7e-06 Score=54.95 Aligned_cols=42 Identities=36% Similarity=0.704 Sum_probs=36.3
Q ss_pred CcceeecCCCCCchHHHHHHHHh---CCCCeEEEeecCcchhh-hc
Q psy11030 111 SKGYLIDGYPREKAQGEQFEREI---NSPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 111 ~~~~~~dg~~~~~~~~~~~~~~~---~~~~~vi~l~~~~~~~~-~l 152 (153)
..++++||||++..|+..|.+.. ..||++|++++|.++++ |+
T Consensus 76 ~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl 121 (183)
T TIGR01359 76 SKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRL 121 (183)
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHH
Confidence 67899999999999999876544 37999999999999988 76
No 145
>KOG3079|consensus
Probab=98.09 E-value=4.2e-05 Score=51.02 Aligned_cols=86 Identities=23% Similarity=0.382 Sum_probs=58.7
Q ss_pred HHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCCccchhhhhhhh
Q psy11030 12 KIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQFE 91 (153)
Q Consensus 12 ~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~p~~~~q~~~~~ 91 (153)
.|=++.+-..=.-+.++++.++.+.-.-..+.- +.+.+.+.+..... +++|||||++.+|...|.
T Consensus 42 LLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~----------~LL~~am~~~~~~~-----~fLIDGyPR~~~q~~~fe 106 (195)
T KOG3079|consen 42 LLRAEIASAGSERGALIKEIIKNGDLVPVEITL----------SLLEEAMRSSGDSN-----GFLIDGYPRNVDQLVEFE 106 (195)
T ss_pred HHHHHHccccChHHHHHHHHHHcCCcCcHHHHH----------HHHHHHHHhcCCCC-----eEEecCCCCChHHHHHHH
Confidence 333333333444677888888776544433321 22445566666553 499999999999998776
Q ss_pred hh-----------hhhHHHHHHHHhhcCCCCc
Q psy11030 92 RE-----------DVVMELLGEKVLKELPNSK 112 (153)
Q Consensus 92 ~~-----------~~~~~~l~~Rl~~R~~~~~ 112 (153)
.. +|+++++.+|+..|.+.+.
T Consensus 107 ~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~~ 138 (195)
T KOG3079|consen 107 RKIQGDPDFVLFFDCPEETMLKRLLHRGQSNS 138 (195)
T ss_pred HHhcCCCCEEEEEeCCHHHHHHHHHhhcccCC
Confidence 65 9999999999999987754
No 146
>PRK02496 adk adenylate kinase; Provisional
Probab=98.08 E-value=1e-05 Score=54.54 Aligned_cols=54 Identities=30% Similarity=0.641 Sum_probs=41.5
Q ss_pred HHHHHHHhhcCCCCcceeecCCCCCchHHHHHHHHh----CCCCeEEEeecCcchhh-hc
Q psy11030 98 ELLGEKVLKELPNSKGYLIDGYPREKAQGEQFEREI----NSPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 98 ~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~~~~~~----~~~~~vi~l~~~~~~~~-~l 152 (153)
..+.+|+.+. ....+|++||||++..|+..+++.+ ..|+++|++++|.+.+. ||
T Consensus 67 ~~l~~~l~~~-~~~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl 125 (184)
T PRK02496 67 DLVQERLQQP-DAANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERL 125 (184)
T ss_pred HHHHHHHhCc-CccCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHH
Confidence 4455555432 3457899999999999988876533 47899999999999988 76
No 147
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.07 E-value=1.1e-05 Score=52.80 Aligned_cols=27 Identities=30% Similarity=0.398 Sum_probs=20.6
Q ss_pred CCCCChHHHHHHHHHHh---C--CceechhHH
Q psy11030 1 GPGSGKGTQAEKIVQKY---G--YTHISTGDL 27 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~---~--~~~i~~~~l 27 (153)
.|||||||+|+.|.++| | ..+++.|.+
T Consensus 10 lsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~l 41 (156)
T PF01583_consen 10 LSGSGKTTLARALERRLFARGIKVYLLDGDNL 41 (156)
T ss_dssp STTSSHHHHHHHHHHHHHHTTS-EEEEEHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEecCcch
Confidence 38999999999999998 3 345566443
No 148
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.04 E-value=3e-06 Score=53.57 Aligned_cols=28 Identities=36% Similarity=0.650 Sum_probs=23.1
Q ss_pred CCCCChHHHHHHHHHHhCCcee--chhHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHI--STGDLL 28 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i--~~~~l~ 28 (153)
|||+||||+++.+++.++++++ +.+++.
T Consensus 6 ~~G~GKT~l~~~la~~l~~~~~~i~~~~~~ 35 (132)
T PF00004_consen 6 PPGTGKTTLARALAQYLGFPFIEIDGSELI 35 (132)
T ss_dssp STTSSHHHHHHHHHHHTTSEEEEEETTHHH
T ss_pred cCCCCeeHHHHHHHhhcccccccccccccc
Confidence 7999999999999999997664 555544
No 149
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.01 E-value=4.6e-05 Score=52.01 Aligned_cols=28 Identities=21% Similarity=0.219 Sum_probs=21.3
Q ss_pred CCCCChHHHHHHHHHHh-----CCceechhHHH
Q psy11030 1 GPGSGKGTQAEKIVQKY-----GYTHISTGDLL 28 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~-----~~~~i~~~~l~ 28 (153)
+|||||||+++.|+..+ +..+++.+++-
T Consensus 32 ~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 32 LSGSGKSTVAGALEEALHELGVSTYLLDGDNVR 64 (198)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence 58999999999999987 24556655544
No 150
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=98.01 E-value=2.5e-05 Score=54.66 Aligned_cols=34 Identities=26% Similarity=0.476 Sum_probs=30.8
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhc
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNS 34 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~ 34 (153)
+||+||||+|..||.++|+.++-..|.+|+.+..
T Consensus 97 asGVGkStIA~ElA~rLgI~~visTD~IREvlR~ 130 (299)
T COG2074 97 ASGVGKSTIAGELARRLGIRSVISTDSIREVLRK 130 (299)
T ss_pred CCCCChhHHHHHHHHHcCCceeecchHHHHHHHH
Confidence 6899999999999999999988777889998865
No 151
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.00 E-value=2.5e-05 Score=59.40 Aligned_cols=34 Identities=29% Similarity=0.439 Sum_probs=27.7
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhc
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNS 34 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~ 34 (153)
+|||||||+|..||..+|+.++-..|.+++.+..
T Consensus 263 ~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr~ 296 (475)
T PRK12337 263 VSGVGKSVLASALAYRLGITRIVSTDAVREVLRA 296 (475)
T ss_pred CCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHHh
Confidence 5899999999999999999866555777776643
No 152
>PRK14527 adenylate kinase; Provisional
Probab=98.00 E-value=1.4e-05 Score=54.23 Aligned_cols=42 Identities=31% Similarity=0.579 Sum_probs=35.1
Q ss_pred CcceeecCCCCCchHHHHHHHHh----CCCCeEEEeecCcchhh-hc
Q psy11030 111 SKGYLIDGYPREKAQGEQFEREI----NSPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 111 ~~~~~~dg~~~~~~~~~~~~~~~----~~~~~vi~l~~~~~~~~-~l 152 (153)
..++++||||++..|++.+.... ..+++|+++++|+++++ ||
T Consensus 83 ~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl 129 (191)
T PRK14527 83 PVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRI 129 (191)
T ss_pred CCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHH
Confidence 35799999999999988775433 46889999999999998 76
No 153
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.99 E-value=4.4e-05 Score=50.72 Aligned_cols=32 Identities=38% Similarity=0.556 Sum_probs=22.8
Q ss_pred CCCCChHHHHHHHHHHh---CCce-echhHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKY---GYTH-ISTGDLLREEV 32 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~---~~~~-i~~~~l~~~~~ 32 (153)
.+||||||+|.+|++++ |+.. +==+|-+|.-+
T Consensus 31 LSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL 66 (197)
T COG0529 31 LSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGL 66 (197)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcc
Confidence 37999999999999998 5433 33345666644
No 154
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.96 E-value=1.8e-05 Score=53.56 Aligned_cols=43 Identities=30% Similarity=0.764 Sum_probs=38.7
Q ss_pred CCcceeecCCCCCchHHHHHHHHhC---CCCeEEEeecCcchhh-hc
Q psy11030 110 NSKGYLIDGYPREKAQGEQFEREIN---SPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 110 ~~~~~~~dg~~~~~~~~~~~~~~~~---~~~~vi~l~~~~~~~~-~l 152 (153)
...++++||||++..|+..+.+... .++++|++++|++++. ||
T Consensus 76 ~~~~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl 122 (194)
T cd01428 76 CKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERI 122 (194)
T ss_pred ccCCEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHH
Confidence 4578999999999999999988776 8999999999999988 76
No 155
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.95 E-value=8.2e-06 Score=55.84 Aligned_cols=18 Identities=22% Similarity=0.429 Sum_probs=16.6
Q ss_pred CCCCChHHHHHHHHHHhC
Q psy11030 1 GPGSGKGTQAEKIVQKYG 18 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~ 18 (153)
|+||||||+++.|+..++
T Consensus 13 ~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 13 PSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCCHHHHHHHHHhhCc
Confidence 799999999999999875
No 156
>PLN02200 adenylate kinase family protein
Probab=97.93 E-value=1.9e-05 Score=55.39 Aligned_cols=43 Identities=33% Similarity=0.767 Sum_probs=37.0
Q ss_pred CCcceeecCCCCCchHHHHHHHHhC-CCCeEEEeecCcchhh-hc
Q psy11030 110 NSKGYLIDGYPREKAQGEQFEREIN-SPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 110 ~~~~~~~dg~~~~~~~~~~~~~~~~-~~~~vi~l~~~~~~~~-~l 152 (153)
...+|++||||++..|+..+..... .||.|+++++|++++. ||
T Consensus 119 ~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl 163 (234)
T PLN02200 119 DNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRV 163 (234)
T ss_pred CCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHH
Confidence 3468999999999999998876553 6999999999999988 76
No 157
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.92 E-value=0.0002 Score=51.22 Aligned_cols=96 Identities=19% Similarity=0.128 Sum_probs=45.3
Q ss_pred CCCCChHHHHHHHHHHh-----CCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcE
Q psy11030 1 GPGSGKGTQAEKIVQKY-----GYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGY 75 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~-----~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 75 (153)
.|||||||+|+.|++.+ ...+++-+++. +.... .... .........+...+........-+
T Consensus 9 ~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~---~~~~~-y~~~----------~~Ek~~R~~l~s~v~r~ls~~~iV 74 (270)
T PF08433_consen 9 LPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG---IDRND-YADS----------KKEKEARGSLKSAVERALSKDTIV 74 (270)
T ss_dssp -TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH----TTSS-S--G----------GGHHHHHHHHHHHHHHHHTT-SEE
T ss_pred CCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc---cchhh-hhch----------hhhHHHHHHHHHHHHHhhccCeEE
Confidence 39999999999999976 23455644443 11110 0000 001112233444444443445778
Q ss_pred eecCCccchhhh---hhhhhh----------hhhHHHHHHHHhhcCCC
Q psy11030 76 LIDGYPREKAQG---EQFERE----------DVVMELLGEKVLKELPN 110 (153)
Q Consensus 76 ildg~p~~~~q~---~~~~~~----------~~~~~~l~~Rl~~R~~~ 110 (153)
|+|+..-..... ..+... .||.+.+++|=.+|...
T Consensus 75 I~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~ 122 (270)
T PF08433_consen 75 ILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEP 122 (270)
T ss_dssp EE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S
T ss_pred EEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCC
Confidence 899864222211 111111 88999999999888543
No 158
>PRK14530 adenylate kinase; Provisional
Probab=97.92 E-value=1.9e-05 Score=54.62 Aligned_cols=41 Identities=29% Similarity=0.654 Sum_probs=36.0
Q ss_pred CcceeecCCCCCchHHHHHHHHhCCCCeEEEeecCcchhh-hc
Q psy11030 111 SKGYLIDGYPREKAQGEQFEREINSPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 111 ~~~~~~dg~~~~~~~~~~~~~~~~~~~~vi~l~~~~~~~~-~l 152 (153)
..+|++||||++..|++.++.. ..+++||+|++|.++++ ||
T Consensus 82 ~~~~IldG~pr~~~q~~~l~~~-~~~d~vI~Ld~~~~~l~~Rl 123 (215)
T PRK14530 82 ADGFVLDGYPRNLEQAEYLESI-TDLDVVLYLDVSEEELVDRL 123 (215)
T ss_pred CCCEEEcCCCCCHHHHHHHHHh-cCCCEEEEEeCCHHHHHHHH
Confidence 4689999999999999988764 47999999999999998 76
No 159
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.90 E-value=5.2e-05 Score=54.35 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=23.2
Q ss_pred CCCCChHHHHHHHHHHh---CCceechhHHH
Q psy11030 1 GPGSGKGTQAEKIVQKY---GYTHISTGDLL 28 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~---~~~~i~~~~l~ 28 (153)
++||||||+++.|+..+ +..+++.|++.
T Consensus 7 ~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~ 37 (273)
T cd02026 7 DSGCGKSTFLRRLTSLFGSDLVTVICLDDYH 37 (273)
T ss_pred CCCCCHHHHHHHHHHhhCCCceEEEECcccc
Confidence 68999999999999877 45678887764
No 160
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.88 E-value=1.1e-05 Score=45.58 Aligned_cols=17 Identities=47% Similarity=0.782 Sum_probs=15.9
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
+|||||||+++.|++.|
T Consensus 7 ~~gsGKst~~~~l~~~l 23 (69)
T cd02019 7 GSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 69999999999999985
No 161
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.85 E-value=8.3e-06 Score=54.53 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=17.0
Q ss_pred CCCCChHHHHHHHHHHhCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGY 19 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~ 19 (153)
|+|+||||+.+.|-+..++
T Consensus 12 PSG~GKsTl~k~L~~~~~l 30 (191)
T COG0194 12 PSGVGKSTLVKALLEDDKL 30 (191)
T ss_pred CCCCCHHHHHHHHHhhcCe
Confidence 8999999999999988844
No 162
>PHA03132 thymidine kinase; Provisional
Probab=97.84 E-value=0.00011 Score=57.58 Aligned_cols=18 Identities=11% Similarity=0.076 Sum_probs=16.4
Q ss_pred CCCeEEEeecCcchhh-hc
Q psy11030 135 SPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 135 ~~~~vi~l~~~~~~~~-~l 152 (153)
.||++|+|+++.++.. |+
T Consensus 401 ~PDLiIyLdv~pe~alkRI 419 (580)
T PHA03132 401 EGDVIVLLKLNSEENLRRV 419 (580)
T ss_pred CCCEEEEEeCCHHHHHHHH
Confidence 6999999999999988 76
No 163
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.83 E-value=1.3e-05 Score=53.91 Aligned_cols=30 Identities=37% Similarity=0.398 Sum_probs=26.4
Q ss_pred CCCCChHHHHHHHHHHh-----CCceechhHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKY-----GYTHISTGDLLRE 30 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~-----~~~~i~~~~l~~~ 30 (153)
+|||||||+|+.|++.+ +..+++.|++.+.
T Consensus 7 ~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~ 41 (179)
T cd02028 7 PSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVP 41 (179)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccC
Confidence 68999999999999997 4578999999874
No 164
>KOG0744|consensus
Probab=97.83 E-value=2.8e-05 Score=56.33 Aligned_cols=33 Identities=24% Similarity=0.417 Sum_probs=24.9
Q ss_pred CCCCChHHHHHHHHHHhCCce-----------echhHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTH-----------ISTGDLLREEVN 33 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~-----------i~~~~l~~~~~~ 33 (153)
|||+|||++|+.||+++.++. +++-.++.+++.
T Consensus 185 PPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFs 228 (423)
T KOG0744|consen 185 PPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFS 228 (423)
T ss_pred CCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHh
Confidence 899999999999999986543 345555555553
No 165
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.83 E-value=3.5e-05 Score=55.60 Aligned_cols=29 Identities=24% Similarity=0.261 Sum_probs=22.3
Q ss_pred CCCCChHHHHHHHHHHhC-------CceechhHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYG-------YTHISTGDLLR 29 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~-------~~~i~~~~l~~ 29 (153)
|+||||||+|+.|+..+. +.++++|.+..
T Consensus 70 ~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~ 105 (290)
T TIGR00554 70 SVAVGKSTTARILQALLSRWPEHRKVELITTDGFLH 105 (290)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccc
Confidence 789999999998877663 44677777664
No 166
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.80 E-value=2.9e-05 Score=56.51 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=25.3
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDL 27 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l 27 (153)
|+||||||+|..|+++++..++|+|.+
T Consensus 12 ptgsGKt~la~~la~~~~~~iis~Ds~ 38 (307)
T PRK00091 12 PTASGKTALAIELAKRLNGEIISADSM 38 (307)
T ss_pred CCCcCHHHHHHHHHHhCCCcEEecccc
Confidence 789999999999999999999999884
No 167
>PLN02459 probable adenylate kinase
Probab=97.79 E-value=2.4e-05 Score=55.44 Aligned_cols=38 Identities=34% Similarity=0.520 Sum_probs=33.8
Q ss_pred CcEeecCCccchhhhhhhhhh---------hhhHHHHHHHHhhcCCC
Q psy11030 73 KGYLIDGYPREKAQGEQFERE---------DVVMELLGEKVLKELPN 110 (153)
Q Consensus 73 ~~~ildg~p~~~~q~~~~~~~---------~~~~~~l~~Rl~~R~~~ 110 (153)
.+|||||||++..|+..+... ++|++++.+|+..|+.+
T Consensus 110 ~g~iLDGFPRt~~Qa~~Le~~~~id~Vi~L~v~d~~l~~Rl~gR~~~ 156 (261)
T PLN02459 110 SGFILDGFPRTVRQAEILEGVTDIDLVVNLKLREEVLVEKCLGRRIC 156 (261)
T ss_pred ceEEEeCCCCCHHHHHHHHhcCCCCEEEEEECCHHHHHHHhhccccc
Confidence 789999999999999888654 89999999999999743
No 168
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.76 E-value=1.6e-05 Score=54.98 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=18.6
Q ss_pred CCCCChHHHHHHHHHHhCCcee
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHI 22 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i 22 (153)
|||+||||+|..+|++++..+.
T Consensus 58 PPG~GKTTLA~IIA~e~~~~~~ 79 (233)
T PF05496_consen 58 PPGLGKTTLARIIANELGVNFK 79 (233)
T ss_dssp STTSSHHHHHHHHHHHCT--EE
T ss_pred CCccchhHHHHHHHhccCCCeE
Confidence 8999999999999999987653
No 169
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.74 E-value=0.00014 Score=58.02 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=22.6
Q ss_pred CCCCChHHHHHHHHHHh-----CCceechhHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKY-----GYTHISTGDLLRE 30 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~-----~~~~i~~~~l~~~ 30 (153)
.|||||||+|+.|++++ ++.+++.|+ +|+
T Consensus 468 ~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~-~r~ 501 (632)
T PRK05506 468 LSGSGKSTIANLVERRLHALGRHTYLLDGDN-VRH 501 (632)
T ss_pred CCCchHHHHHHHHHHHHHHcCCCEEEEcChh-hhh
Confidence 48999999999999997 346677755 444
No 170
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.72 E-value=2.1e-05 Score=53.55 Aligned_cols=18 Identities=39% Similarity=0.508 Sum_probs=17.2
Q ss_pred CCCCChHHHHHHHHHHhC
Q psy11030 1 GPGSGKGTQAEKIVQKYG 18 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~ 18 (153)
||||||||+|+.|+..++
T Consensus 7 ~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 7 PSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp STTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 799999999999999996
No 171
>PLN02674 adenylate kinase
Probab=97.72 E-value=3.3e-05 Score=54.35 Aligned_cols=38 Identities=24% Similarity=0.573 Sum_probs=32.6
Q ss_pred CcEeecCCccchhhhhhhhhh--------------hhhHHHHHHHHhhcCCC
Q psy11030 73 KGYLIDGYPREKAQGEQFERE--------------DVVMELLGEKVLKELPN 110 (153)
Q Consensus 73 ~~~ildg~p~~~~q~~~~~~~--------------~~~~~~l~~Rl~~R~~~ 110 (153)
.|||+||||++..|++.+... ++|++++.+|+..|..+
T Consensus 110 ~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~ 161 (244)
T PLN02674 110 KGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIH 161 (244)
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccccc
Confidence 589999999999999866432 89999999999998643
No 172
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=97.71 E-value=0.00041 Score=48.21 Aligned_cols=87 Identities=14% Similarity=0.182 Sum_probs=46.7
Q ss_pred CCCChHHHHHHHHHHh---C--CceechhHHHHHHHhcCCcchhHHHHHHHc----CCCCCHHHHHHHHHHHHhhhC-CC
Q psy11030 2 PGSGKGTQAEKIVQKY---G--YTHISTGDLLREEVNSGSARGADLSKVMKD----GGLVSTDVVMELLGEKVLKEL-PN 71 (153)
Q Consensus 2 pGsGKst~a~~L~~~~---~--~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~-~~ 71 (153)
||.|||++|+.|++.+ | ..+++++++-|+........ ..+.. +...........+.+.+.... ..
T Consensus 21 PArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~-----~ff~p~n~~~~~~R~~~a~~~l~dl~~~l~~~~ 95 (222)
T PF01591_consen 21 PARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDA-----EFFDPDNEEAKKLREQIAKEALEDLIEWLQEEG 95 (222)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-G-----GGGSTT-HHHHHHHHHHHHHHHHHHHHHHHTS-
T ss_pred CCCCHHHHHHHHHHHHhhcCCCcceeecccceeccccccccc-----ccCCCCChHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 8999999999999987 3 46899999988876541110 00000 000111122233333443333 23
Q ss_pred CCcEeecCCccchhhhhhhhhh
Q psy11030 72 SKGYLIDGYPREKAQGEQFERE 93 (153)
Q Consensus 72 ~~~~ildg~p~~~~q~~~~~~~ 93 (153)
+.--|+|+...+.+...++...
T Consensus 96 G~VAI~DATN~T~~RR~~l~~~ 117 (222)
T PF01591_consen 96 GQVAIFDATNSTRERRKMLVER 117 (222)
T ss_dssp -SEEEEES---SHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 4456999998887776554433
No 173
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.69 E-value=2.4e-05 Score=52.16 Aligned_cols=32 Identities=31% Similarity=0.468 Sum_probs=24.8
Q ss_pred CCCCChHHHHHHHHHHhC--CceechhHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYG--YTHISTGDLLREEV 32 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~--~~~i~~~~l~~~~~ 32 (153)
||||||||+|..++..++ +.++.++......+
T Consensus 9 ~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~ 42 (170)
T PRK05800 9 GARSGKSRFAERLAAQSGLQVLYIATAQPFDDEM 42 (170)
T ss_pred CCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHH
Confidence 799999999999999986 55677665544443
No 174
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=97.68 E-value=3.5e-05 Score=51.85 Aligned_cols=105 Identities=16% Similarity=0.203 Sum_probs=50.8
Q ss_pred CCCChHHHHHHHHHHhCCceechhHHHHHHHhc-CCc------chhHHH--HH---HHcC-------CCCCHHHHHHHHH
Q psy11030 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNS-GSA------RGADLS--KV---MKDG-------GLVSTDVVMELLG 62 (153)
Q Consensus 2 pGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~-~~~------~g~~~~--~~---~~~~-------~~~~~~~~~~~l~ 62 (153)
.|||++|+|+.||+++|+++++- +++.+.... +-. ...... .. +..+ .....+.+.....
T Consensus 8 ~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (179)
T PF13189_consen 8 YGSGGREIAERLAEKLGYPYYDR-EIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDDKIFRAQS 86 (179)
T ss_dssp TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT------------SS-HHH--HH---HHS--------------HHHHHHH
T ss_pred CCCChHHHHHHHHHHcCCccCCH-HHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHHHHHHHHH
Confidence 69999999999999999999998 777765433 100 011111 11 1111 1222334444444
Q ss_pred HHHhhhCCCCCcEeecCCccchhhh---hhhhhh-hhhHHHHHHHHhhcC
Q psy11030 63 EKVLKELPNSKGYLIDGYPREKAQG---EQFERE-DVVMELLGEKVLKEL 108 (153)
Q Consensus 63 ~~~~~~~~~~~~~ildg~p~~~~q~---~~~~~~-~~~~~~l~~Rl~~R~ 108 (153)
+.+.+. +...+.|+-|.-...--. ..+... .+|.+.+.+|+++|.
T Consensus 87 ~~i~~l-a~~~~~Vi~GR~a~~il~~~~~~l~V~i~A~~~~Rv~ri~~~~ 135 (179)
T PF13189_consen 87 EIIREL-AAKGNCVIVGRCANYILRDIPNVLHVFIYAPLEFRVERIMERE 135 (179)
T ss_dssp HHHHHH-HH---EEEESTTHHHHTTT-TTEEEEEEEE-HHHHHHHHHHHH
T ss_pred HHHHHH-hccCCEEEEecCHhhhhCCCCCeEEEEEECCHHHHHHHHHHHc
Confidence 455544 334566766652211111 111111 889999999999983
No 175
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.66 E-value=2.8e-05 Score=57.72 Aligned_cols=26 Identities=27% Similarity=0.279 Sum_probs=22.4
Q ss_pred CCCCChHHHHHHHHHHhCCceechhH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGD 26 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~ 26 (153)
|||+||||+|+.|+...+..+.-++.
T Consensus 56 PPG~GKTTlA~liA~~~~~~f~~~sA 81 (436)
T COG2256 56 PPGTGKTTLARLIAGTTNAAFEALSA 81 (436)
T ss_pred CCCCCHHHHHHHHHHhhCCceEEecc
Confidence 89999999999999999987765443
No 176
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.65 E-value=7.2e-05 Score=51.25 Aligned_cols=78 Identities=24% Similarity=0.289 Sum_probs=46.0
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHH-HhcCCcc--hhH---------HHHHHHcCCCCCHHHHHHHHHHHHhhh
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREE-VNSGSAR--GAD---------LSKVMKDGGLVSTDVVMELLGEKVLKE 68 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~-~~~~~~~--g~~---------~~~~~~~~~~~~~~~~~~~l~~~~~~~ 68 (153)
|+|+|||.+|-.||+++|.++|+.|.+..-. +..++.. -.. -...+.+|. ++.+...+.+...+...
T Consensus 9 pT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~-i~a~ea~~~Li~~v~~~ 87 (233)
T PF01745_consen 9 PTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGI-INAEEAHERLISEVNSY 87 (233)
T ss_dssp STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S---HHHHHHHHHHHHHTT
T ss_pred CCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCC-cCHHHHHHHHHHHHHhc
Confidence 7899999999999999999999987754321 1111110 000 113345566 45555777788888887
Q ss_pred CCCCCcEeecCC
Q psy11030 69 LPNSKGYLIDGY 80 (153)
Q Consensus 69 ~~~~~~~ildg~ 80 (153)
.. ..++|++|=
T Consensus 88 ~~-~~~~IlEGG 98 (233)
T PF01745_consen 88 SA-HGGLILEGG 98 (233)
T ss_dssp TT-SSEEEEEE-
T ss_pred cc-cCceEEeCc
Confidence 44 789999974
No 177
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.64 E-value=0.00015 Score=48.70 Aligned_cols=57 Identities=23% Similarity=0.457 Sum_probs=44.7
Q ss_pred hhHHHHHHHHhhcCCCCcceeecCCCCCchHHHHHHHH----hCCCCeEEEeecCcchhh-hc
Q psy11030 95 VVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQFERE----INSPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 95 ~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~~~~~----~~~~~~vi~l~~~~~~~~-~l 152 (153)
+-...+.+|+.+-++.. ++++|||||+..|++.+.+. ..++|.|+.++++.+.++ |+
T Consensus 63 i~~~~v~~rl~~~d~~~-~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~ 124 (178)
T COG0563 63 IVNGLVKERLDEADCKA-GFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERL 124 (178)
T ss_pred HHHHHHHHHHHhhcccC-eEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHH
Confidence 33456777887654444 89999999999999998754 358899999999997776 65
No 178
>PLN02165 adenylate isopentenyltransferase
Probab=97.60 E-value=4.5e-05 Score=55.80 Aligned_cols=27 Identities=19% Similarity=0.399 Sum_probs=25.5
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDL 27 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l 27 (153)
|+||||||+|..|++.++..++++|.+
T Consensus 51 PTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 51 ATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred CCCCcHHHHHHHHHHHcCCceecCChh
Confidence 789999999999999999999999887
No 179
>KOG0739|consensus
Probab=97.56 E-value=0.00045 Score=49.89 Aligned_cols=34 Identities=26% Similarity=0.429 Sum_probs=29.2
Q ss_pred CCCCChHHHHHHHHHHhCCc--eechhHHHHHHHhc
Q psy11030 1 GPGSGKGTQAEKIVQKYGYT--HISTGDLLREEVNS 34 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~--~i~~~~l~~~~~~~ 34 (153)
|||+|||++|++.|-+-|-. -+|++||+.+++.+
T Consensus 174 PPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGE 209 (439)
T KOG0739|consen 174 PPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGE 209 (439)
T ss_pred CCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhcc
Confidence 89999999999999999844 46788999998754
No 180
>KOG3308|consensus
Probab=97.56 E-value=0.00042 Score=47.01 Aligned_cols=31 Identities=29% Similarity=0.431 Sum_probs=26.8
Q ss_pred CCCChHHHHHHHHHHh-CCceechhHHHHHHH
Q psy11030 2 PGSGKGTQAEKIVQKY-GYTHISTGDLLREEV 32 (153)
Q Consensus 2 pGsGKst~a~~L~~~~-~~~~i~~~~l~~~~~ 32 (153)
..|||||+|+.|.+.| |+..|+=||+++...
T Consensus 13 TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~ 44 (225)
T KOG3308|consen 13 TNSGKTTLAKSLHRFFPGCSLIHQDDFYKPEN 44 (225)
T ss_pred cCCCHhHHHHHHHHHccCCeeeccccccCchh
Confidence 4699999999999999 688999999887654
No 181
>PRK13808 adenylate kinase; Provisional
Probab=97.53 E-value=8.1e-05 Score=54.60 Aligned_cols=16 Identities=19% Similarity=0.052 Sum_probs=13.9
Q ss_pred hhhHHHHHHHHhhcCC
Q psy11030 94 DVVMELLGEKVLKELP 109 (153)
Q Consensus 94 ~~~~~~l~~Rl~~R~~ 109 (153)
+||++++.+|++.|..
T Consensus 114 DVp~evll~Rl~~R~~ 129 (333)
T PRK13808 114 RVNEGALLARVETRVA 129 (333)
T ss_pred ECCHHHHHHHHHcCcc
Confidence 7899999999998853
No 182
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.53 E-value=6.5e-05 Score=54.09 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=24.6
Q ss_pred CCCCChHHHHHHHHHHhCCceechhH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGD 26 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~ 26 (153)
|+|||||++|..|+++++..+||+|.
T Consensus 7 ~t~~GKs~la~~l~~~~~~~iis~Ds 32 (287)
T TIGR00174 7 PTAVGKSQLAIQLAKKLNAEIISVDS 32 (287)
T ss_pred CCCCCHHHHHHHHHHhCCCcEEEech
Confidence 79999999999999999999999887
No 183
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.52 E-value=6e-05 Score=49.78 Aligned_cols=31 Identities=32% Similarity=0.633 Sum_probs=22.8
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhc
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNS 34 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~ 34 (153)
+|||||||+++.|+++ |++++ .+..+..+..
T Consensus 7 ~~stGKTTL~~~L~~~-g~~~v--~E~ar~~~~~ 37 (163)
T PF13521_consen 7 GPSTGKTTLIEALAAR-GYPVV--PEYAREIIEE 37 (163)
T ss_dssp -TTSHHHHHHHHHHHH-T-EEE----TTHHHHHH
T ss_pred CCCCCHHHHHHHHHHc-CCeEE--eecHHHHHHH
Confidence 5899999999999998 88877 6777776644
No 184
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.50 E-value=7.2e-05 Score=56.36 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=23.5
Q ss_pred CCCCChHHHHHHHHHHhCCceechhH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGD 26 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~ 26 (153)
|||+||||+|+.|++.++.+++.++.
T Consensus 55 ppG~GKT~lAraLA~~l~~~fi~vda 80 (441)
T TIGR00390 55 PTGVGKTEIARRLAKLANAPFIKVEA 80 (441)
T ss_pred CCCCCHHHHHHHHHHHhCCeEEEeec
Confidence 89999999999999999998887763
No 185
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.47 E-value=0.0008 Score=48.63 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=17.8
Q ss_pred CCCCChHHHHHHHHHHhCCceec
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIS 23 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~ 23 (153)
++||||||+++.|+ ..|+..++
T Consensus 14 ~~GsGKtt~~~~l~-~~g~~~~d 35 (288)
T PRK05416 14 LSGAGKSVALRALE-DLGYYCVD 35 (288)
T ss_pred CCCCcHHHHHHHHH-HcCCeEEC
Confidence 68999999999996 46776653
No 186
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.46 E-value=0.0001 Score=47.24 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=19.8
Q ss_pred CCCCChHHHHHHHHHHhCCcee
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHI 22 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i 22 (153)
|||+|||++++.+++.++.+++
T Consensus 7 ~~G~GKt~l~~~la~~~~~~~~ 28 (139)
T PF07728_consen 7 PPGTGKTTLARELAALLGRPVI 28 (139)
T ss_dssp SSSSSHHHHHHHHHHHHTCEEE
T ss_pred CCCCCHHHHHHHHHHHhhcceE
Confidence 7999999999999999987664
No 187
>PLN02840 tRNA dimethylallyltransferase
Probab=97.45 E-value=7.6e-05 Score=56.27 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=24.2
Q ss_pred CCCCChHHHHHHHHHHhCCceechhH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGD 26 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~ 26 (153)
|+||||||+|..|+++++..+|++|.
T Consensus 29 ptgsGKTtla~~La~~~~~~iis~Ds 54 (421)
T PLN02840 29 PTGAGKSRLALELAKRLNGEIISADS 54 (421)
T ss_pred CCCCCHHHHHHHHHHHCCCCeEeccc
Confidence 78999999999999999988888876
No 188
>KOG2702|consensus
Probab=97.44 E-value=0.00085 Score=46.72 Aligned_cols=39 Identities=23% Similarity=0.145 Sum_probs=25.4
Q ss_pred CcEeecCCccchhhhhhhh------hh---hhhHHHHHHHHhhcCCCC
Q psy11030 73 KGYLIDGYPREKAQGEQFE------RE---DVVMELLGEKVLKELPNS 111 (153)
Q Consensus 73 ~~~ildg~p~~~~q~~~~~------~~---~~~~~~l~~Rl~~R~~~~ 111 (153)
+-+|++|.....+|..|-+ .. ++..++..+|+..|.-.+
T Consensus 236 rIvI~EGnYlLl~~~~Wkdi~k~~d~k~~idV~~~~a~~RVa~RHl~s 283 (323)
T KOG2702|consen 236 RIVILEGNYLLLDQENWKDIYKTLDDKYKIDVDYEAAEERVAKRHLQS 283 (323)
T ss_pred eEEEEeccEEEecCccHHHHHHHhhhheeccccHHHHHHHHHHHhhcc
Confidence 3456677655555544322 22 888899999999986554
No 189
>PRK05439 pantothenate kinase; Provisional
Probab=97.44 E-value=7.4e-05 Score=54.36 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=24.4
Q ss_pred CCCCChHHHHHHHHHHhC-------CceechhHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYG-------YTHISTGDLLRE 30 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~-------~~~i~~~~l~~~ 30 (153)
||||||||+|+.|+..++ +.++++|+++..
T Consensus 94 ~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~ 130 (311)
T PRK05439 94 SVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYP 130 (311)
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccC
Confidence 699999999999998663 457888888744
No 190
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.43 E-value=9.6e-05 Score=55.74 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=23.2
Q ss_pred CCCCChHHHHHHHHHHhCCceechhH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGD 26 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~ 26 (153)
||||||||+|+.|++.++.+++.++.
T Consensus 58 p~G~GKT~LAr~LAk~l~~~fi~vD~ 83 (443)
T PRK05201 58 PTGVGKTEIARRLAKLANAPFIKVEA 83 (443)
T ss_pred CCCCCHHHHHHHHHHHhCChheeecc
Confidence 79999999999999999988877654
No 191
>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).
Probab=97.42 E-value=0.0022 Score=42.76 Aligned_cols=134 Identities=11% Similarity=0.164 Sum_probs=71.3
Q ss_pred CCCChHHHHHHHHHHhCC---ceechhHHHHHHHhcCCcchhHHHHHHHcCCCCC--HHHHH-----------HHHHHHH
Q psy11030 2 PGSGKGTQAEKIVQKYGY---THISTGDLLREEVNSGSARGADLSKVMKDGGLVS--TDVVM-----------ELLGEKV 65 (153)
Q Consensus 2 pGsGKst~a~~L~~~~~~---~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~-----------~~l~~~~ 65 (153)
.+|||.|+|..|.+.++. .++++++-++..+... .|..+..++..+..-. ...+. ..+...+
T Consensus 8 rksGKD~~a~~l~~~l~~~~~~~vriS~piK~~~A~~--~gld~~~Ll~d~~YKE~~R~~mi~w~e~~r~~dp~~F~r~~ 85 (182)
T TIGR01223 8 RKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQE--HGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADPGFFCRKI 85 (182)
T ss_pred CCCChHHHHHHHHHhhccccceEEEecHHHHHHHHHH--hChhHHHhcCCcccchhhhHHHHHHHHHHHhhCccHHHHHH
Confidence 479999999999999874 3788888888876532 2222222222111100 00011 1112222
Q ss_pred hhhCCCCCcEeecCCccchhhhhhhhhh----------hhhHHHHHHHHhhcCCCCcceeecCCCCCchHHHH-HHHHhC
Q psy11030 66 LKELPNSKGYLIDGYPREKAQGEQFERE----------DVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQ-FEREIN 134 (153)
Q Consensus 66 ~~~~~~~~~~ildg~p~~~~q~~~~~~~----------~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~-~~~~~~ 134 (153)
... ....-|||++. |...+..+|... .++++++.+|--... . |. +.++-+. ++. ..
T Consensus 86 ~~~-~~~~v~iIsD~-Rr~~dv~~f~~~~g~~~~~VRV~AseetR~~Rgw~Ft---~-----gv--dd~~SEc~lDd-~~ 152 (182)
T TIGR01223 86 VEG-ISQPIWLVSDT-RRVSDIQWFREAYGAVTQTVRVVALEQSRQQRGWVFT---P-----GV--DDAESECGLDN-FG 152 (182)
T ss_pred Hhc-cCCCEEEEeCC-CcccHHHHHHHHcCCceEEEEEecCHHHHHHHHHhcc---c-----cc--cccccccCCCc-cc
Confidence 221 22357888887 334444444333 889999988873221 0 10 0111111 222 23
Q ss_pred CCCeEEEeecCcchhh
Q psy11030 135 SPTGIVYFEVPDDVMT 150 (153)
Q Consensus 135 ~~~~vi~l~~~~~~~~ 150 (153)
..|.||.|+...+.++
T Consensus 153 ~~D~vi~Nd~~~~~l~ 168 (182)
T TIGR01223 153 DFDWVIENHGVEQRLE 168 (182)
T ss_pred ceeEEEecCCChHHHH
Confidence 5899999998887654
No 192
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.41 E-value=9e-05 Score=46.74 Aligned_cols=20 Identities=40% Similarity=0.600 Sum_probs=17.9
Q ss_pred CCCCChHHHHHHHHHHhCCc
Q psy11030 1 GPGSGKGTQAEKIVQKYGYT 20 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~ 20 (153)
||||||||+++.|+..++..
T Consensus 10 ~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 10 PPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCCCcHHHHHHHHHhccCCC
Confidence 79999999999999998643
No 193
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.34 E-value=0.00015 Score=52.96 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=20.5
Q ss_pred CCCCChHHHHHHHHHHhCCcee
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHI 22 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i 22 (153)
|||+||||+++.||+.+|.+++
T Consensus 72 ~pGtGKTtla~~lA~~l~~~~~ 93 (327)
T TIGR01650 72 YHGTGKSTHIEQIAARLNWPCV 93 (327)
T ss_pred CCCChHHHHHHHHHHHHCCCeE
Confidence 7999999999999999998775
No 194
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.33 E-value=0.00014 Score=53.80 Aligned_cols=19 Identities=21% Similarity=0.223 Sum_probs=17.7
Q ss_pred CCCCChHHHHHHHHHHhCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGY 19 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~ 19 (153)
||||||||+|+.|++.++.
T Consensus 86 PPGsGKStla~~La~~l~~ 104 (361)
T smart00763 86 PVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 8999999999999999964
No 195
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=97.33 E-value=0.00026 Score=49.02 Aligned_cols=32 Identities=25% Similarity=0.229 Sum_probs=26.8
Q ss_pred CCCCChHHHHHHHHHHhCCce-echhHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTH-ISTGDLLREEVN 33 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~-i~~~~l~~~~~~ 33 (153)
.|||||||+|+.+.+ .|.++ +++++.+++.+.
T Consensus 8 ~~gsGKstva~~~~~-~g~~~~~~~~d~ik~~l~ 40 (227)
T PHA02575 8 KKRSGKDTVADFIIE-NYNAVKYQLADPIKEILA 40 (227)
T ss_pred CCCCCHHHHHHHHHh-cCCcEEEehhHHHHHHHH
Confidence 489999999997755 57777 999999999764
No 196
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.31 E-value=0.00059 Score=43.04 Aligned_cols=17 Identities=35% Similarity=0.655 Sum_probs=15.3
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+|||++++.+++.+
T Consensus 12 ~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 12 PPGSGKTTLIKRLARQL 28 (131)
T ss_dssp -TTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 69999999999999987
No 197
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.30 E-value=0.00016 Score=55.82 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=21.7
Q ss_pred CCCCChHHHHHHHHHHhCCceech
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIST 24 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~ 24 (153)
|||+|||++|+.+|.+++.+++.+
T Consensus 267 PpGTGKTllAkaiA~e~~~~~~~l 290 (489)
T CHL00195 267 IQGTGKSLTAKAIANDWQLPLLRL 290 (489)
T ss_pred CCCCcHHHHHHHHHHHhCCCEEEE
Confidence 899999999999999999887654
No 198
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.30 E-value=0.006 Score=46.32 Aligned_cols=17 Identities=47% Similarity=0.683 Sum_probs=15.5
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||++..|+..+
T Consensus 231 ptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 231 PTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 78999999999999866
No 199
>PRK14528 adenylate kinase; Provisional
Probab=97.30 E-value=0.00026 Score=47.86 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=27.4
Q ss_pred ecCCccchhhhhhhhhh--------------hhhHHHHHHHHhhcCCC
Q psy11030 77 IDGYPREKAQGEQFERE--------------DVVMELLGEKVLKELPN 110 (153)
Q Consensus 77 ldg~p~~~~q~~~~~~~--------------~~~~~~l~~Rl~~R~~~ 110 (153)
+||||++..|++.+... +||++++.+|+..|...
T Consensus 84 iDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~ 131 (186)
T PRK14528 84 LDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEI 131 (186)
T ss_pred EeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccc
Confidence 57899999998765431 99999999999998643
No 200
>PRK06761 hypothetical protein; Provisional
Probab=97.29 E-value=0.00015 Score=52.06 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=19.8
Q ss_pred CCCCChHHHHHHHHHHhCCceech
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIST 24 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~ 24 (153)
||||||||+++.|+++++...+++
T Consensus 11 ~~GsGKTTla~~L~~~L~~~g~~v 34 (282)
T PRK06761 11 LPGFGKSTTAKMLNDILSQNGIEV 34 (282)
T ss_pred CCCCCHHHHHHHHHHhcCcCceEE
Confidence 699999999999999997544443
No 201
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.28 E-value=0.00019 Score=54.30 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=21.7
Q ss_pred CCCCChHHHHHHHHHHhCCceechh
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTG 25 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~ 25 (153)
||||||||+|+.|++.++.+++.++
T Consensus 116 p~GtGKT~lAr~lA~~l~~pf~~id 140 (412)
T PRK05342 116 PTGSGKTLLAQTLARILDVPFAIAD 140 (412)
T ss_pred CCCCCHHHHHHHHHHHhCCCceecc
Confidence 7999999999999999988776443
No 202
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.28 E-value=0.00048 Score=45.17 Aligned_cols=31 Identities=19% Similarity=0.313 Sum_probs=23.5
Q ss_pred CCCCChHHHHHHHHHHh--CCceechhHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKY--GYTHISTGDLLREE 31 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~--~~~~i~~~~l~~~~ 31 (153)
|.||||||+-..+...+ ++.++++|.+..+.
T Consensus 10 ~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~i 42 (187)
T COG4185 10 PNGSGKSTVYASTLAPLLPGIVFVNADEIAAQI 42 (187)
T ss_pred CCCCCceeeeeccchhhcCCeEEECHHHHhhhc
Confidence 57999999876655555 57889998887663
No 203
>KOG0733|consensus
Probab=97.27 E-value=0.00016 Score=56.55 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=22.4
Q ss_pred CCCCChHHHHHHHHHHhCCceech
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIST 24 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~ 24 (153)
|||+|||.+|+++|.+++++++++
T Consensus 231 PPGCGKT~lA~AiAgel~vPf~~i 254 (802)
T KOG0733|consen 231 PPGCGKTSLANAIAGELGVPFLSI 254 (802)
T ss_pred CCCccHHHHHHHHhhhcCCceEee
Confidence 899999999999999999998764
No 204
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.27 E-value=0.00024 Score=50.66 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=20.1
Q ss_pred CCCCChHHHHHHHHHHhCCcee
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHI 22 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i 22 (153)
|||+|||++|+.|++.+|.+++
T Consensus 29 ~~GtGKT~lA~~la~~lg~~~~ 50 (262)
T TIGR02640 29 PAGTGKTTLAMHVARKRDRPVM 50 (262)
T ss_pred CCCCCHHHHHHHHHHHhCCCEE
Confidence 7999999999999999988765
No 205
>CHL00181 cbbX CbbX; Provisional
Probab=97.25 E-value=0.00033 Score=50.64 Aligned_cols=32 Identities=28% Similarity=0.423 Sum_probs=24.1
Q ss_pred CCCCChHHHHHHHHHHhC---------CceechhHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYG---------YTHISTGDLLREEV 32 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~---------~~~i~~~~l~~~~~ 32 (153)
|||+||||+|+.+++.+. +..++.++++..+.
T Consensus 67 ~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~ 107 (287)
T CHL00181 67 SPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYI 107 (287)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHh
Confidence 799999999999988762 34556667766543
No 206
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.24 E-value=0.00022 Score=50.15 Aligned_cols=19 Identities=26% Similarity=0.248 Sum_probs=17.1
Q ss_pred CCCCChHHHHHHHHHHhCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGY 19 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~ 19 (153)
||||||||.|+.+++.+..
T Consensus 4 paGSGKTT~~~~~~~~~~~ 22 (238)
T PF03029_consen 4 PAGSGKTTFCKGLSEWLES 22 (238)
T ss_dssp STTSSHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 8999999999999998843
No 207
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.23 E-value=0.00022 Score=52.96 Aligned_cols=32 Identities=38% Similarity=0.606 Sum_probs=25.8
Q ss_pred CCCCChHHHHHHHHHHhCCce--echhHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTH--ISTGDLLREEV 32 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~--i~~~~l~~~~~ 32 (153)
|||+|||.+|+++++++|+.+ ++.++++..+.
T Consensus 156 PPGcGKTllAraiA~elg~~~i~vsa~eL~sk~v 189 (413)
T PLN00020 156 GKGQGKSFQCELVFKKMGIEPIVMSAGELESENA 189 (413)
T ss_pred CCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcC
Confidence 899999999999999998764 56666665433
No 208
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.23 E-value=0.00023 Score=50.73 Aligned_cols=17 Identities=35% Similarity=0.599 Sum_probs=15.9
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+||||+|+.+++.+
T Consensus 50 ppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 50 NPGTGKTTVARILGKLF 66 (261)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 89999999999999875
No 209
>PRK09087 hypothetical protein; Validated
Probab=97.20 E-value=0.00041 Score=48.43 Aligned_cols=31 Identities=23% Similarity=0.158 Sum_probs=26.3
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREE 31 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~ 31 (153)
|+|||||++++.+++..+..+++.+++..+.
T Consensus 52 ~~GsGKThLl~~~~~~~~~~~i~~~~~~~~~ 82 (226)
T PRK09087 52 PVGSGKTHLASIWREKSDALLIHPNEIGSDA 82 (226)
T ss_pred CCCCCHHHHHHHHHHhcCCEEecHHHcchHH
Confidence 6899999999999999999999987655443
No 210
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=97.20 E-value=0.0031 Score=41.43 Aligned_cols=111 Identities=14% Similarity=0.047 Sum_probs=62.1
Q ss_pred CCCChHHHHHHHHHHhC--CceechhHHHHHHHhcCCcchhH--HHH-HHHcCC---CCCHHHHHHH----HHHHHhhhC
Q psy11030 2 PGSGKGTQAEKIVQKYG--YTHISTGDLLREEVNSGSARGAD--LSK-VMKDGG---LVSTDVVMEL----LGEKVLKEL 69 (153)
Q Consensus 2 pGsGKst~a~~L~~~~~--~~~i~~~~l~~~~~~~~~~~g~~--~~~-~~~~~~---~~~~~~~~~~----l~~~~~~~~ 69 (153)
|.+|||++|.+++.-+. +-|+-+|.++...+......+.- ... ...+|. .+....+.+. ....+....
T Consensus 32 ~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~e~~~~~~r~ai~a~a 111 (205)
T COG3896 32 SSAGKSSIALAFQDLAAEPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPILELAMHSRRRAIRAYA 111 (205)
T ss_pred CccchhHHHHHHHHHhhcchhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEeechhHHHHHHHHHHHHHHHHh
Confidence 67999999999999885 45677877776655432221111 110 011111 1111112222 234444444
Q ss_pred CCCCcEeecCCccchhhhhh-h------hhh----hhhHHHHHHHHhhcCCCCc
Q psy11030 70 PNSKGYLIDGYPREKAQGEQ-F------ERE----DVVMELLGEKVLKELPNSK 112 (153)
Q Consensus 70 ~~~~~~ildg~p~~~~q~~~-~------~~~----~~~~~~l~~Rl~~R~~~~~ 112 (153)
.++.++|.|.+-.+....-. + ... .||.|++.+|-..|.....
T Consensus 112 d~G~~~i~Ddv~~~r~~L~Dc~r~l~g~~v~~VGV~~p~E~~~~Re~rr~dR~p 165 (205)
T COG3896 112 DNGMNVIADDVIWTREWLVDCLRVLEGCRVWMVGVHVPDEEGARRELRRGDRHP 165 (205)
T ss_pred ccCcceeehhcccchhhHHHHHHHHhCCceEEEEeeccHHHHHHHHhhcCCcCc
Confidence 56788999988666544322 1 111 8999999998886654334
No 211
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.18 E-value=0.0003 Score=46.19 Aligned_cols=80 Identities=24% Similarity=0.330 Sum_probs=43.3
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhc-CCcchhHHHHHH---------------HcCCC-CCHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNS-GSARGADLSKVM---------------KDGGL-VSTDVVMELLGE 63 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~-~~~~g~~~~~~~---------------~~~~~-~~~~~~~~~l~~ 63 (153)
||||||||++..+++.+.-.-+.++-++..++.+ +.-.|-.+.++. .-|.+ +.-+.+.+....
T Consensus 13 ~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~~le~i~~~ 92 (179)
T COG1618 13 RPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVEGLEEIAIP 92 (179)
T ss_pred CCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHHHHHHHhHH
Confidence 7999999999999988844434555555544433 211111111000 00111 222334445556
Q ss_pred HHhhhCCCCCcEeecCC
Q psy11030 64 KVLKELPNSKGYLIDGY 80 (153)
Q Consensus 64 ~~~~~~~~~~~~ildg~ 80 (153)
.+.......+-+|||..
T Consensus 93 al~rA~~~aDvIIIDEI 109 (179)
T COG1618 93 ALRRALEEADVIIIDEI 109 (179)
T ss_pred HHHHHhhcCCEEEEecc
Confidence 66655455678888876
No 212
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=97.18 E-value=0.00014 Score=46.01 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=15.8
Q ss_pred CCCCChHHHHHHHHHHhCCcee
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHI 22 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i 22 (153)
+||+||||+++.||+.+|..+.
T Consensus 7 ~PG~GKT~la~~lA~~~~~~f~ 28 (131)
T PF07726_consen 7 VPGVGKTTLAKALARSLGLSFK 28 (131)
T ss_dssp ---HHHHHHHHHHHHHTT--EE
T ss_pred CCccHHHHHHHHHHHHcCCcee
Confidence 6999999999999999987654
No 213
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.16 E-value=0.00029 Score=53.04 Aligned_cols=30 Identities=27% Similarity=0.455 Sum_probs=23.8
Q ss_pred CCCCChHHHHHHHHHHhCCcee--chhHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHI--STGDLLRE 30 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i--~~~~l~~~ 30 (153)
|||+|||++|+.++.+++..++ +..+++..
T Consensus 173 ppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~ 204 (389)
T PRK03992 173 PPGTGKTLLAKAVAHETNATFIRVVGSELVQK 204 (389)
T ss_pred CCCCChHHHHHHHHHHhCCCEEEeehHHHhHh
Confidence 7999999999999999986654 55555543
No 214
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.15 E-value=0.00031 Score=53.13 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=20.6
Q ss_pred CCCCChHHHHHHHHHHhCCceec
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIS 23 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~ 23 (153)
|||||||++|+.|++.++.++..
T Consensus 124 P~GsGKT~lAraLA~~l~~pf~~ 146 (413)
T TIGR00382 124 PTGSGKTLLAQTLARILNVPFAI 146 (413)
T ss_pred CCCcCHHHHHHHHHHhcCCCeEE
Confidence 89999999999999999877653
No 215
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.14 E-value=0.00031 Score=54.51 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.3
Q ss_pred CCCCChHHHHHHHHHHhCCceech
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIST 24 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~ 24 (153)
|||+|||++++.++.+.+.+++.+
T Consensus 96 ppGtGKT~la~alA~~~~~~~~~i 119 (495)
T TIGR01241 96 PPGTGKTLLAKAVAGEAGVPFFSI 119 (495)
T ss_pred CCCCCHHHHHHHHHHHcCCCeeec
Confidence 899999999999999998877643
No 216
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.14 E-value=0.00037 Score=44.29 Aligned_cols=17 Identities=41% Similarity=0.630 Sum_probs=16.2
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+||||+++.+++.+
T Consensus 27 ~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 27 PPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 79999999999999987
No 217
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.12 E-value=0.00058 Score=47.03 Aligned_cols=36 Identities=33% Similarity=0.540 Sum_probs=30.7
Q ss_pred cEeecCCccchhhhhhhhh-----h------hhhHHHHHHHHhhcCC
Q psy11030 74 GYLIDGYPREKAQGEQFER-----E------DVVMELLGEKVLKELP 109 (153)
Q Consensus 74 ~~ildg~p~~~~q~~~~~~-----~------~~~~~~l~~Rl~~R~~ 109 (153)
+|||||||++..|+..+.. . ++|++++.+|+..|..
T Consensus 80 ~~ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~~ 126 (210)
T TIGR01351 80 GFILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRRI 126 (210)
T ss_pred cEEEeCCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCCc
Confidence 6999999999999877642 1 9999999999999863
No 218
>PRK09169 hypothetical protein; Validated
Probab=97.11 E-value=0.0011 Score=58.47 Aligned_cols=93 Identities=6% Similarity=0.032 Sum_probs=59.3
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEee-c-
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLI-D- 78 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il-d- 78 (153)
++|+||||+++.|+.++++.++++|..+.+. .|..|.+++.... +..+.....+.+.+. ...|| .
T Consensus 2118 ~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks------~GrkI~rIFa~eG-~FRe~Eaa~V~Dllr------~~vVLSTG 2184 (2316)
T PRK09169 2118 EVGPLLQALLQKLAGGLRVDKPHSVRKIAKK------IGKKIARIQALRG-LSPEQAAARVRDALR------WEVVLPAE 2184 (2316)
T ss_pred CCCCCHhHHHHHHHHHhCCCccccHHHHHHH------hCCCHHHHHHhcC-chHHHHHHHHHHHhc------CCeEEeCC
Confidence 5799999999999999999999999998884 4556777654333 555555555555543 12222 2
Q ss_pred CCc-cchhhhhhhhhh------hhhHHHHHHHHhh
Q psy11030 79 GYP-REKAQGEQFERE------DVVMELLGEKVLK 106 (153)
Q Consensus 79 g~p-~~~~q~~~~~~~------~~~~~~l~~Rl~~ 106 (153)
|+- ...+....+... ..+.+++.+|+..
T Consensus 2185 GGav~~~enr~~L~~~GlvV~L~an~~tl~~Rty~ 2219 (2316)
T PRK09169 2185 GFGAAVEQARQALGAKGLRVMRINNGFAAPDTTYA 2219 (2316)
T ss_pred CCcccCHHHHHHHHHCCEEEEEECCHHHHHHHhcc
Confidence 222 222222222222 7788888888863
No 219
>PRK15453 phosphoribulokinase; Provisional
Probab=97.11 E-value=0.00027 Score=50.63 Aligned_cols=29 Identities=14% Similarity=0.247 Sum_probs=23.2
Q ss_pred CCCCChHHHHHHHHHHhC-----CceechhHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYG-----YTHISTGDLLR 29 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~-----~~~i~~~~l~~ 29 (153)
+|||||||+|+.|++.|+ ..+++.|++.+
T Consensus 13 ~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 13 SSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 589999999999998884 45677777664
No 220
>PHA02244 ATPase-like protein
Probab=97.11 E-value=0.00038 Score=51.76 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=24.7
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLL 28 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~ 28 (153)
|||+|||++|+.|+..++.+++.+..+.
T Consensus 127 ppGtGKTtLA~aLA~~lg~pfv~In~l~ 154 (383)
T PHA02244 127 GAGSGKNHIAEQIAEALDLDFYFMNAIM 154 (383)
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEEecCh
Confidence 7999999999999999999988776543
No 221
>PLN02748 tRNA dimethylallyltransferase
Probab=97.10 E-value=0.00035 Score=53.61 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=24.4
Q ss_pred CCCCChHHHHHHHHHHhCCceechhH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGD 26 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~ 26 (153)
|+||||||+|..||++++..+|++|.
T Consensus 30 ptgsGKs~la~~la~~~~~eii~~Ds 55 (468)
T PLN02748 30 PTGSGKSKLAVDLASHFPVEIINADS 55 (468)
T ss_pred CCCCCHHHHHHHHHHhcCeeEEcCch
Confidence 78999999999999999999999985
No 222
>PF13245 AAA_19: Part of AAA domain
Probab=97.10 E-value=0.00046 Score=39.73 Aligned_cols=17 Identities=41% Similarity=0.638 Sum_probs=11.9
Q ss_pred CCCCChH-HHHHHHHHHh
Q psy11030 1 GPGSGKG-TQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKs-t~a~~L~~~~ 17 (153)
||||||| |++..++..+
T Consensus 18 ~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 18 PPGTGKTTTLAARIAELL 35 (76)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 7999999 5555555444
No 223
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.0006 Score=50.22 Aligned_cols=36 Identities=25% Similarity=0.456 Sum_probs=29.8
Q ss_pred CCCCChHHHHHHHHHHhCCcee--chhHHHHHHHhcCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHI--STGDLLREEVNSGS 36 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i--~~~~l~~~~~~~~~ 36 (153)
|||+|||-+|++.|.+-++.+| .-++++++++.++.
T Consensus 193 PPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGa 230 (406)
T COG1222 193 PPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGA 230 (406)
T ss_pred CCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccch
Confidence 8999999999999999987665 56788888776543
No 224
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.07 E-value=0.00041 Score=52.37 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.1
Q ss_pred CCCCChHHHHHHHHHHhCCceech
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIST 24 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~ 24 (153)
|||+|||++|+.++.+.+..++.+
T Consensus 187 ppGTGKT~LAkalA~~l~~~fi~i 210 (398)
T PTZ00454 187 PPGTGKTMLAKAVAHHTTATFIRV 210 (398)
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEE
Confidence 899999999999999998776543
No 225
>KOG0743|consensus
Probab=97.07 E-value=0.00038 Score=52.54 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=21.3
Q ss_pred CCCCChHHHHHHHHHHhCCceec
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIS 23 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~ 23 (153)
|||+||||...+||..+++.+++
T Consensus 243 PPGTGKSS~IaAmAn~L~ydIyd 265 (457)
T KOG0743|consen 243 PPGTGKSSFIAAMANYLNYDIYD 265 (457)
T ss_pred CCCCCHHHHHHHHHhhcCCceEE
Confidence 89999999999999999987765
No 226
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.03 E-value=0.0005 Score=51.34 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.3
Q ss_pred CCCCChHHHHHHHHHHhCCceec
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIS 23 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~ 23 (153)
|||+|||++|+.++++++..++.
T Consensus 164 ppGtGKT~lakaia~~l~~~~~~ 186 (364)
T TIGR01242 164 PPGTGKTLLAKAVAHETNATFIR 186 (364)
T ss_pred CCCCCHHHHHHHHHHhCCCCEEe
Confidence 79999999999999999876654
No 227
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.02 E-value=0.00071 Score=48.85 Aligned_cols=30 Identities=30% Similarity=0.505 Sum_probs=21.9
Q ss_pred CCCCChHHHHHHHHHHhC---------CceechhHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYG---------YTHISTGDLLRE 30 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~---------~~~i~~~~l~~~ 30 (153)
|||+||||+|+.+++.+. +..++.++++..
T Consensus 66 ~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~ 104 (284)
T TIGR02880 66 NPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQ 104 (284)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHh
Confidence 799999999988887662 334566666554
No 228
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.97 E-value=0.00035 Score=49.71 Aligned_cols=29 Identities=14% Similarity=0.250 Sum_probs=24.1
Q ss_pred CCCCChHHHHHHHHHHhC-----CceechhHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYG-----YTHISTGDLLR 29 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~-----~~~i~~~~l~~ 29 (153)
++||||||+++.|++.|+ ..+++.|++.+
T Consensus 7 ~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 7 SSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 589999999999998884 45788887776
No 229
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.95 E-value=0.00069 Score=52.78 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=20.4
Q ss_pred CCCCChHHHHHHHHHHhCCcee
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHI 22 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i 22 (153)
||||||||..+.||+++|+.+.
T Consensus 53 P~G~GKtttv~~La~elg~~v~ 74 (519)
T PF03215_consen 53 PSGCGKTTTVKVLAKELGFEVQ 74 (519)
T ss_pred CCCCCHHHHHHHHHHHhCCeeE
Confidence 8999999999999999998665
No 230
>PRK06620 hypothetical protein; Validated
Probab=96.95 E-value=0.00059 Score=47.23 Aligned_cols=24 Identities=17% Similarity=-0.026 Sum_probs=20.3
Q ss_pred CCCCChHHHHHHHHHHhCCceech
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIST 24 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~ 24 (153)
|||||||++++.+++..+..+++.
T Consensus 52 p~G~GKThLl~a~~~~~~~~~~~~ 75 (214)
T PRK06620 52 PSSSGKTYLTKIWQNLSNAYIIKD 75 (214)
T ss_pred CCCCCHHHHHHHHHhccCCEEcch
Confidence 799999999999999888765553
No 231
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.94 E-value=0.00071 Score=41.55 Aligned_cols=17 Identities=35% Similarity=0.620 Sum_probs=15.4
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+|||++|+.|++.+
T Consensus 6 ~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 6 PPGIGKSTLAKELAKDL 22 (107)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 68999999999998865
No 232
>PF13173 AAA_14: AAA domain
Probab=96.94 E-value=0.0007 Score=42.88 Aligned_cols=29 Identities=21% Similarity=0.154 Sum_probs=23.4
Q ss_pred CCCCChHHHHHHHHHHhC----CceechhHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYG----YTHISTGDLLR 29 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~----~~~i~~~~l~~ 29 (153)
|.||||||+++.+++++. +.+++.++.--
T Consensus 10 ~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~ 42 (128)
T PF13173_consen 10 PRGVGKTTLLKQLAKDLLPPENILYINFDDPRD 42 (128)
T ss_pred CCCCCHHHHHHHHHHHhcccccceeeccCCHHH
Confidence 689999999999998875 67777766544
No 233
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.93 E-value=0.0089 Score=44.12 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=26.0
Q ss_pred CCCCChHHHHHHHHHHh---C--CceechhHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKY---G--YTHISTGDLLREEV 32 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~---~--~~~i~~~~l~~~~~ 32 (153)
|||+|||+++..+++++ | +.++++.+++....
T Consensus 191 ~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~ 227 (329)
T PRK06835 191 NTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILR 227 (329)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHH
Confidence 68999999999999987 3 45678888877643
No 234
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.93 E-value=0.00076 Score=43.10 Aligned_cols=20 Identities=30% Similarity=0.466 Sum_probs=17.9
Q ss_pred CCCCChHHHHHHHHHHhCCc
Q psy11030 1 GPGSGKGTQAEKIVQKYGYT 20 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~ 20 (153)
+.|+||||+++.+++.+|..
T Consensus 30 ~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 30 DLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCCHHHHHHHHHHHcCCC
Confidence 57999999999999999864
No 235
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.92 E-value=0.00077 Score=50.94 Aligned_cols=30 Identities=33% Similarity=0.386 Sum_probs=23.2
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEV 32 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~ 32 (153)
++||||||+++.|++++|...+. ++.|+.+
T Consensus 227 ~~gsGKTTL~~~La~~~g~~~v~--E~~R~~~ 256 (399)
T PRK08099 227 GESSGKSTLVNKLANIFNTTSAW--EYGREYV 256 (399)
T ss_pred CCCCCHHHHHHHHHHHhCCCeee--eccHHHH
Confidence 68999999999999999877543 4444443
No 236
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.91 E-value=0.00061 Score=43.78 Aligned_cols=18 Identities=22% Similarity=0.573 Sum_probs=16.4
Q ss_pred CCCCChHHHHHHHHHHhC
Q psy11030 1 GPGSGKGTQAEKIVQKYG 18 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~ 18 (153)
|+||||||+++.|++.+.
T Consensus 7 psGsGKstl~~~L~~~~~ 24 (137)
T cd00071 7 PSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CCCCCHHHHHHHHHhcCC
Confidence 799999999999999764
No 237
>PRK08116 hypothetical protein; Validated
Probab=96.91 E-value=0.0048 Score=44.22 Aligned_cols=32 Identities=25% Similarity=0.290 Sum_probs=25.3
Q ss_pred CCCCChHHHHHHHHHHh---C--CceechhHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKY---G--YTHISTGDLLREEV 32 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~---~--~~~i~~~~l~~~~~ 32 (153)
+||+|||++|..+++++ + +.++++.+++....
T Consensus 122 ~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~ 158 (268)
T PRK08116 122 SVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIK 158 (268)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence 68999999999999986 3 34668888777643
No 238
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.90 E-value=0.00082 Score=48.11 Aligned_cols=21 Identities=38% Similarity=0.491 Sum_probs=19.0
Q ss_pred CCCCChHHHHHHHHHHhCCce
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTH 21 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~ 21 (153)
|||.||||+|..+|+++|...
T Consensus 60 PPGlGKTTLA~IIA~Emgvn~ 80 (332)
T COG2255 60 PPGLGKTTLAHIIANELGVNL 80 (332)
T ss_pred CCCCcHHHHHHHHHHHhcCCe
Confidence 899999999999999998643
No 239
>PRK04195 replication factor C large subunit; Provisional
Probab=96.89 E-value=0.0007 Score=52.43 Aligned_cols=23 Identities=35% Similarity=0.686 Sum_probs=20.7
Q ss_pred CCCCChHHHHHHHHHHhCCceec
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIS 23 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~ 23 (153)
|||+||||+|+.|++++++.++.
T Consensus 47 ppG~GKTtla~ala~el~~~~ie 69 (482)
T PRK04195 47 PPGVGKTSLAHALANDYGWEVIE 69 (482)
T ss_pred CCCCCHHHHHHHHHHHcCCCEEE
Confidence 89999999999999999877654
No 240
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.87 E-value=0.00078 Score=51.43 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.3
Q ss_pred CCCCChHHHHHHHHHHhCCceec
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIS 23 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~ 23 (153)
|||+|||++|+.++.+++..++.
T Consensus 225 PPGTGKT~LAraIA~el~~~fi~ 247 (438)
T PTZ00361 225 PPGTGKTLLAKAVANETSATFLR 247 (438)
T ss_pred CCCCCHHHHHHHHHHhhCCCEEE
Confidence 79999999999999999876653
No 241
>CHL00176 ftsH cell division protein; Validated
Probab=96.86 E-value=0.00084 Score=53.60 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.5
Q ss_pred CCCCChHHHHHHHHHHhCCceech
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIST 24 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~ 24 (153)
|||+|||++|+.+|.+.+.+++.+
T Consensus 224 PpGTGKT~LAralA~e~~~p~i~i 247 (638)
T CHL00176 224 PPGTGKTLLAKAIAGEAEVPFFSI 247 (638)
T ss_pred CCCCCHHHHHHHHHHHhCCCeeec
Confidence 899999999999999999877654
No 242
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=96.85 E-value=0.012 Score=42.28 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=17.2
Q ss_pred CCCCChHHHHHHHHHHhCCceec
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIS 23 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~ 23 (153)
.+||||||..+.|.. +|+.-++
T Consensus 9 lSGaGKs~Al~~lED-~Gy~cvD 30 (284)
T PF03668_consen 9 LSGAGKSTALRALED-LGYYCVD 30 (284)
T ss_pred CCcCCHHHHHHHHHh-cCeeEEc
Confidence 379999999998855 7776554
No 243
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.85 E-value=0.00095 Score=49.13 Aligned_cols=21 Identities=38% Similarity=0.491 Sum_probs=19.1
Q ss_pred CCCCChHHHHHHHHHHhCCce
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTH 21 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~ 21 (153)
|||+||||+|+.++++++..+
T Consensus 59 ppG~GKT~la~~ia~~l~~~~ 79 (328)
T PRK00080 59 PPGLGKTTLANIIANEMGVNI 79 (328)
T ss_pred CCCccHHHHHHHHHHHhCCCe
Confidence 799999999999999998654
No 244
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.83 E-value=0.0015 Score=45.49 Aligned_cols=30 Identities=17% Similarity=0.232 Sum_probs=24.2
Q ss_pred CCCCChHHHHHHHHHHh-----CCceechhHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKY-----GYTHISTGDLLRE 30 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~-----~~~~i~~~~l~~~ 30 (153)
|||||||++++.++++. .+.++++.+....
T Consensus 50 ~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~ 84 (227)
T PRK08903 50 EAGSGRSHLLQALVADASYGGRNARYLDAASPLLA 84 (227)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH
Confidence 69999999999999887 5677787765433
No 245
>PLN02772 guanylate kinase
Probab=96.83 E-value=0.0022 Score=48.13 Aligned_cols=17 Identities=29% Similarity=0.626 Sum_probs=15.6
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||+|+.+.|.+.+
T Consensus 143 PSGvGKsTL~~~L~~~~ 159 (398)
T PLN02772 143 PSGVGKGTLISMLMKEF 159 (398)
T ss_pred CCCCCHHHHHHHHhhhc
Confidence 78999999999998865
No 246
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=96.83 E-value=0.009 Score=48.21 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=19.0
Q ss_pred CCCCChHHHHHHHHHHhCCceech
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIST 24 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~ 24 (153)
.||+||||+|+.|++.++...+++
T Consensus 223 lp~~GKStia~~L~~~l~~~~~~~ 246 (664)
T PTZ00322 223 LPGRGKTYVARQIQRYFQWNGLQS 246 (664)
T ss_pred cCCCChhHHHHHHHHHHHhcCCCc
Confidence 389999999999999985444433
No 247
>PLN02796 D-glycerate 3-kinase
Probab=96.83 E-value=0.00071 Score=49.90 Aligned_cols=29 Identities=24% Similarity=0.293 Sum_probs=23.2
Q ss_pred CCCCChHHHHHHHHHHhC-----CceechhHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYG-----YTHISTGDLLR 29 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~-----~~~i~~~~l~~ 29 (153)
|+||||||+++.|+..+. ...+++|++..
T Consensus 108 ~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYL 141 (347)
T PLN02796 108 PQGCGKTTLVFALVYLFNATGRRAASLSIDDFYL 141 (347)
T ss_pred CCCCcHHHHHHHHHHHhcccCCceeEEEECCccc
Confidence 689999999999999884 34577777663
No 248
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.82 E-value=0.00088 Score=50.88 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=20.1
Q ss_pred CCCCChHHHHHHHHHHhCCceec
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIS 23 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~ 23 (153)
|||+||||+|+.+++.++..++.
T Consensus 44 ppGtGKTtLA~~ia~~~~~~~~~ 66 (413)
T PRK13342 44 PPGTGKTTLARIIAGATDAPFEA 66 (413)
T ss_pred CCCCCHHHHHHHHHHHhCCCEEE
Confidence 79999999999999998776654
No 249
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.82 E-value=0.021 Score=41.72 Aligned_cols=32 Identities=25% Similarity=0.306 Sum_probs=26.3
Q ss_pred CCCCChHHHHHHHHHHh---CC--ceechhHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKY---GY--THISTGDLLREEV 32 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~---~~--~~i~~~~l~~~~~ 32 (153)
|||+|||+++..++.++ |. .++++.+++.+..
T Consensus 164 ~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk 200 (306)
T PRK08939 164 DFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELK 200 (306)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHH
Confidence 69999999999999988 43 4668888887754
No 250
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.81 E-value=0.0011 Score=44.12 Aligned_cols=17 Identities=35% Similarity=0.657 Sum_probs=15.4
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
+||+||||+.+.+.+.+
T Consensus 7 ~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 7 PPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp -TTSSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHh
Confidence 69999999999999988
No 251
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.81 E-value=0.0011 Score=48.10 Aligned_cols=20 Identities=40% Similarity=0.544 Sum_probs=18.4
Q ss_pred CCCCChHHHHHHHHHHhCCc
Q psy11030 1 GPGSGKGTQAEKIVQKYGYT 20 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~ 20 (153)
|||+|||++|+.++++++..
T Consensus 38 p~G~GKT~la~~ia~~~~~~ 57 (305)
T TIGR00635 38 PPGLGKTTLAHIIANEMGVN 57 (305)
T ss_pred CCCCCHHHHHHHHHHHhCCC
Confidence 79999999999999999754
No 252
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.79 E-value=0.0011 Score=48.72 Aligned_cols=22 Identities=27% Similarity=0.447 Sum_probs=20.0
Q ss_pred CCCCChHHHHHHHHHHhCCcee
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHI 22 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i 22 (153)
+|||||||+++.|++.++..++
T Consensus 170 ~~~~gkstl~~~l~~~~~~~~v 191 (325)
T TIGR01526 170 GESTGKSTLVNKLAAVFNTTSA 191 (325)
T ss_pred CCCCCHHHHHHHHHHhhCCCEE
Confidence 6899999999999999998874
No 253
>PF05729 NACHT: NACHT domain
Probab=96.78 E-value=0.001 Score=43.45 Aligned_cols=17 Identities=47% Similarity=0.710 Sum_probs=15.8
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
+||+||||+++.++..+
T Consensus 8 ~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 8 EPGSGKSTLLRKLAQQL 24 (166)
T ss_pred CCCCChHHHHHHHHHHH
Confidence 69999999999999887
No 254
>PRK06893 DNA replication initiation factor; Validated
Probab=96.77 E-value=0.0016 Score=45.59 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=21.0
Q ss_pred CCCCChHHHHHHHHHHh-----CCceechh
Q psy11030 1 GPGSGKGTQAEKIVQKY-----GYTHISTG 25 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~-----~~~~i~~~ 25 (153)
|||+|||+++..+++++ +..++++.
T Consensus 47 ~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 47 GKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 79999999999999886 56677764
No 255
>PRK12377 putative replication protein; Provisional
Probab=96.75 E-value=0.0022 Score=45.38 Aligned_cols=31 Identities=26% Similarity=0.441 Sum_probs=25.0
Q ss_pred CCCCChHHHHHHHHHHh---CC--ceechhHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKY---GY--THISTGDLLREE 31 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~---~~--~~i~~~~l~~~~ 31 (153)
|||+|||++|..++..+ |. .++++.+++...
T Consensus 109 ~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l 144 (248)
T PRK12377 109 KPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRL 144 (248)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHH
Confidence 69999999999999988 33 467787777764
No 256
>KOG0731|consensus
Probab=96.72 E-value=0.00088 Score=53.90 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=22.4
Q ss_pred CCCCChHHHHHHHHHHhCCceech
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIST 24 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~ 24 (153)
|||+|||-+|+++|.+-|++++++
T Consensus 352 PPGTGKTLLAKAiAGEAgVPF~sv 375 (774)
T KOG0731|consen 352 PPGTGKTLLAKAIAGEAGVPFFSV 375 (774)
T ss_pred CCCCcHHHHHHHHhcccCCceeee
Confidence 899999999999999999998864
No 257
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.70 E-value=0.0014 Score=45.34 Aligned_cols=29 Identities=17% Similarity=0.195 Sum_probs=22.5
Q ss_pred CCCCChHHHHHHHHHHhC-----CceechhHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYG-----YTHISTGDLLR 29 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~-----~~~i~~~~l~~ 29 (153)
||||||||+|+.+++... +.++++..+..
T Consensus 46 ~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~ 79 (226)
T TIGR03420 46 ESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQ 79 (226)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHH
Confidence 799999999999998762 45677766643
No 258
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.70 E-value=0.0013 Score=43.90 Aligned_cols=19 Identities=21% Similarity=0.191 Sum_probs=17.4
Q ss_pred CCCCChHHHHHHHHHHhCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGY 19 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~ 19 (153)
|+|+|||.+|+.|++.+..
T Consensus 11 psGvGKT~la~~la~~l~~ 29 (171)
T PF07724_consen 11 PSGVGKTELAKALAELLFV 29 (171)
T ss_dssp STTSSHHHHHHHHHHHHT-
T ss_pred CCCCCHHHHHHHHHHHhcc
Confidence 8999999999999999984
No 259
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.70 E-value=0.0011 Score=53.91 Aligned_cols=30 Identities=27% Similarity=0.482 Sum_probs=23.9
Q ss_pred CCCCChHHHHHHHHHHhCCceec--hhHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIS--TGDLLRE 30 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~--~~~l~~~ 30 (153)
|||||||++|+.+|.+++..+++ ..+++..
T Consensus 495 ppGtGKT~lakalA~e~~~~fi~v~~~~l~~~ 526 (733)
T TIGR01243 495 PPGTGKTLLAKAVATESGANFIAVRGPEILSK 526 (733)
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEEehHHHhhc
Confidence 89999999999999999877664 4455444
No 260
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.68 E-value=0.0026 Score=42.73 Aligned_cols=32 Identities=38% Similarity=0.489 Sum_probs=26.6
Q ss_pred CCCCChHHHHHHHHHHh---C--CceechhHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKY---G--YTHISTGDLLREEV 32 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~---~--~~~i~~~~l~~~~~ 32 (153)
|||+|||.+|..++.++ | ..++++.+++...-
T Consensus 55 ~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~ 91 (178)
T PF01695_consen 55 PPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELK 91 (178)
T ss_dssp STTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHhccCCcceeEeecCceecccc
Confidence 79999999999998766 3 56789999888854
No 261
>PLN02318 phosphoribulokinase/uridine kinase
Probab=96.66 E-value=0.00092 Score=52.63 Aligned_cols=28 Identities=25% Similarity=0.303 Sum_probs=23.5
Q ss_pred CCCCChHHHHHHHHHHh-CCceechhHHH
Q psy11030 1 GPGSGKGTQAEKIVQKY-GYTHISTGDLL 28 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~-~~~~i~~~~l~ 28 (153)
|+||||||+|+.|+..+ +...++.|++.
T Consensus 73 pSGSGKTTLAk~LaglLp~vgvIsmDdy~ 101 (656)
T PLN02318 73 PSGAGKTVFTEKVLNFMPSIAVISMDNYN 101 (656)
T ss_pred CCCCcHHHHHHHHHhhCCCcEEEEEccee
Confidence 78999999999999987 45678888763
No 262
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.65 E-value=0.0014 Score=50.58 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=17.8
Q ss_pred CCCCChHHHHHHHHHHhCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGY 19 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~ 19 (153)
|||+||||+|+.+++.+++
T Consensus 44 PpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 44 PRGTGKTTVARILAKSLNC 62 (472)
T ss_pred CCCCCHHHHHHHHHHHhcc
Confidence 8999999999999999875
No 263
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.0012 Score=51.21 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=21.1
Q ss_pred CCCCChHHHHHHHHHHhCCceech
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIST 24 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~ 24 (153)
|||+|||.+|+.++.+++.+++++
T Consensus 284 pPGtGKT~lAkava~~~~~~fi~v 307 (494)
T COG0464 284 PPGTGKTLLAKAVALESRSRFISV 307 (494)
T ss_pred CCCCCHHHHHHHHHhhCCCeEEEe
Confidence 899999999999999888777654
No 264
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.63 E-value=0.0019 Score=47.40 Aligned_cols=28 Identities=25% Similarity=0.533 Sum_probs=21.7
Q ss_pred CCCCChHHHHHHHHHHhC-------CceechhHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYG-------YTHISTGDLL 28 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~-------~~~i~~~~l~ 28 (153)
|||+||||+|+.+++.+. +.++++.++.
T Consensus 44 p~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~ 78 (337)
T PRK12402 44 PPGSGKTAAVRALARELYGDPWENNFTEFNVADFF 78 (337)
T ss_pred CCCCCHHHHHHHHHHHhcCcccccceEEechhhhh
Confidence 799999999999999873 2356666554
No 265
>KOG0730|consensus
Probab=96.60 E-value=0.0015 Score=51.53 Aligned_cols=32 Identities=28% Similarity=0.469 Sum_probs=25.5
Q ss_pred CCCCChHHHHHHHHHHhCCceech--hHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIST--GDLLREEV 32 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~--~~l~~~~~ 32 (153)
||||||||+|+.+|.+-++.++++ -+++..+.
T Consensus 476 PPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~v 509 (693)
T KOG0730|consen 476 PPGCGKTLLAKALANEAGMNFLSVKGPELFSKYV 509 (693)
T ss_pred CCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhc
Confidence 899999999999999998777764 44555544
No 266
>KOG3062|consensus
Probab=96.59 E-value=0.013 Score=40.71 Aligned_cols=112 Identities=20% Similarity=0.112 Sum_probs=59.5
Q ss_pred CCCChHHHHHHHHHHhCC-----ceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEe
Q psy11030 2 PGSGKGTQAEKIVQKYGY-----THISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYL 76 (153)
Q Consensus 2 pGsGKst~a~~L~~~~~~-----~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i 76 (153)
|.|||||.|+.|.+.|.- .++-+++-. --+...+..| ..-....+...+...+......+.-+|
T Consensus 10 P~SGKstrA~~L~~~l~~~~~K~~v~ii~des-lg~~~ns~y~----------~s~~EK~lRg~L~S~v~R~Lsk~~iVI 78 (281)
T KOG3062|consen 10 PCSGKSTRAVELREALKERGTKQSVRIIDDES-LGIEKNSNYG----------DSQAEKALRGKLRSAVDRSLSKGDIVI 78 (281)
T ss_pred CCCCchhHHHHHHHHHHhhcccceEEEechhh-cCCCCccccc----------ccHHHHHHHHHHHHHHHhhcccCcEEE
Confidence 899999999999888721 222222211 0000001111 111122344556667776666778889
Q ss_pred ecCCccchhhh---hhhhhh----------hhhHHHHHHHHhhcCCCCcceeecCCCCCchHHHH
Q psy11030 77 IDGYPREKAQG---EQFERE----------DVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQ 128 (153)
Q Consensus 77 ldg~p~~~~q~---~~~~~~----------~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~ 128 (153)
+|......... .+..+. .||.+.+++.-.+|.... - |||+++.-++-.
T Consensus 79 ~DslNyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~Ns~~~~p~--e--~gy~~e~le~L~ 139 (281)
T KOG3062|consen 79 VDSLNYIKGFRYELYCEAKAARTTYCVVHTAVPQELCREWNSEREDPG--E--DGYDDELLEALV 139 (281)
T ss_pred EecccccccceeeeeeehhccceeEEEEEecCCHHHHHHhcccCCCCC--C--CCCCHHHHHHHH
Confidence 98653322211 111111 789999988776554332 2 688876555444
No 267
>PRK06921 hypothetical protein; Provisional
Probab=96.58 E-value=0.0081 Score=43.02 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=22.6
Q ss_pred CCCCChHHHHHHHHHHh----CC--ceechhHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKY----GY--THISTGDLLRE 30 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~----~~--~~i~~~~l~~~ 30 (153)
|||+|||+++..+++++ |. .++++.+++..
T Consensus 125 ~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~ 160 (266)
T PRK06921 125 QPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGD 160 (266)
T ss_pred CCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHH
Confidence 69999999999998876 33 35666666554
No 268
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.58 E-value=0.0017 Score=47.85 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=19.0
Q ss_pred CCCCChHHHHHHHHHHhCCce
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTH 21 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~ 21 (153)
|||+|||++++.+|+.++.++
T Consensus 51 ~PG~gKT~la~~lA~~l~~~~ 71 (329)
T COG0714 51 PPGVGKTLLARALARALGLPF 71 (329)
T ss_pred CCCccHHHHHHHHHHHhCCCe
Confidence 799999999999999998654
No 269
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.58 E-value=0.0018 Score=45.43 Aligned_cols=27 Identities=7% Similarity=0.121 Sum_probs=21.6
Q ss_pred CCCCChHHHHHHHHHHhC-----CceechhHH
Q psy11030 1 GPGSGKGTQAEKIVQKYG-----YTHISTGDL 27 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~-----~~~i~~~~l 27 (153)
|||||||+++..++++.. +.++++++.
T Consensus 53 p~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~ 84 (235)
T PRK08084 53 REGAGRSHLLHAACAELSQRGRAVGYVPLDKR 84 (235)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHH
Confidence 799999999999998764 466777653
No 270
>PRK06526 transposase; Provisional
Probab=96.57 E-value=0.0027 Score=45.10 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=23.9
Q ss_pred CCCCChHHHHHHHHHHh---C--CceechhHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKY---G--YTHISTGDLLREEV 32 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~---~--~~~i~~~~l~~~~~ 32 (153)
|||+|||++|..|+.+. | +.++++.+++....
T Consensus 106 p~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~ 142 (254)
T PRK06526 106 PPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLA 142 (254)
T ss_pred CCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHH
Confidence 79999999999998765 3 34566777766643
No 271
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.57 E-value=0.011 Score=41.14 Aligned_cols=78 Identities=22% Similarity=0.226 Sum_probs=42.1
Q ss_pred CCCCChHHHHHHHHHHh----C--CceechhHHHHHHHhcCCcchhHHHHHHHcCC--------------CCCHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKY----G--YTHISTGDLLREEVNSGSARGADLSKVMKDGG--------------LVSTDVVMEL 60 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~----~--~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~--------------~~~~~~~~~~ 60 (153)
|||||||++|..++.+. | +.++++++-.++....-...|-.+..+...|. ....+.+...
T Consensus 27 ~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~~~~~~~~~l~~~ 106 (226)
T PF06745_consen 27 PPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIGWSPNDLEELLSK 106 (226)
T ss_dssp STTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST-TSCCHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccccccccCHHHHHHH
Confidence 79999999998765433 3 45666544444433322233434444443322 1122334455
Q ss_pred HHHHHhhhCCCCCcEeecCC
Q psy11030 61 LGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 61 l~~~~~~~~~~~~~~ildg~ 80 (153)
+.+.+.... ..-+|||+.
T Consensus 107 i~~~i~~~~--~~~vVIDsl 124 (226)
T PF06745_consen 107 IREAIEELK--PDRVVIDSL 124 (226)
T ss_dssp HHHHHHHHT--SSEEEEETH
T ss_pred HHHHHHhcC--CCEEEEECH
Confidence 566666543 278899986
No 272
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.55 E-value=0.0084 Score=41.66 Aligned_cols=33 Identities=24% Similarity=0.368 Sum_probs=25.9
Q ss_pred CCCCChHHHHHHHHHHh-----C--CceechhHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY-----G--YTHISTGDLLREEVN 33 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~-----~--~~~i~~~~l~~~~~~ 33 (153)
|+|+|||.+.+.++.++ + +.+++..++....+.
T Consensus 42 ~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~ 81 (219)
T PF00308_consen 42 PSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFAD 81 (219)
T ss_dssp STTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHH
Confidence 68999999999998765 2 457888888877553
No 273
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.53 E-value=0.0018 Score=46.12 Aligned_cols=18 Identities=22% Similarity=0.446 Sum_probs=16.5
Q ss_pred CCCCChHHHHHHHHHHhC
Q psy11030 1 GPGSGKGTQAEKIVQKYG 18 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~ 18 (153)
|+||||||+++.+++.+.
T Consensus 51 ~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 51 EVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 799999999999999875
No 274
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.53 E-value=0.0035 Score=44.27 Aligned_cols=31 Identities=29% Similarity=0.505 Sum_probs=24.9
Q ss_pred CCCCChHHHHHHHHHHh---C--CceechhHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKY---G--YTHISTGDLLREE 31 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~---~--~~~i~~~~l~~~~ 31 (153)
+||+|||+++..++.++ | +.++++.+++...
T Consensus 107 ~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l 142 (244)
T PRK07952 107 KPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAM 142 (244)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHH
Confidence 68999999999999988 3 3456888877663
No 275
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.52 E-value=0.002 Score=42.81 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=19.6
Q ss_pred CCCCChHHHHHHHHHHh---CC--ceechh
Q psy11030 1 GPGSGKGTQAEKIVQKY---GY--THISTG 25 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~---~~--~~i~~~ 25 (153)
||||||||++..++..+ |. .+++.|
T Consensus 8 ~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 8 LQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 79999999999998876 43 446665
No 276
>PRK09183 transposase/IS protein; Provisional
Probab=96.52 E-value=0.0036 Score=44.65 Aligned_cols=30 Identities=27% Similarity=0.298 Sum_probs=22.4
Q ss_pred CCCCChHHHHHHHHHHh---C--CceechhHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKY---G--YTHISTGDLLRE 30 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~---~--~~~i~~~~l~~~ 30 (153)
|||+|||+++..|+... | +.+++..+++..
T Consensus 110 p~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~ 144 (259)
T PRK09183 110 PSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQ 144 (259)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHH
Confidence 79999999999997654 3 345676666644
No 277
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.52 E-value=0.002 Score=48.13 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=17.7
Q ss_pred CCCCChHHHHHHHHHHhCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGY 19 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~ 19 (153)
|||+||||+|+.+++.+++
T Consensus 46 p~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 46 TRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred CCCCCHHHHHHHHHHHhcC
Confidence 7999999999999999874
No 278
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.51 E-value=0.0018 Score=50.34 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=18.0
Q ss_pred CCCCChHHHHHHHHHHhCCc
Q psy11030 1 GPGSGKGTQAEKIVQKYGYT 20 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~ 20 (153)
|||+|||++|+.++++++..
T Consensus 224 PPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 224 PPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CCCCcHHHHHHHHHHhhccc
Confidence 89999999999999998644
No 279
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.51 E-value=0.0018 Score=53.05 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=19.9
Q ss_pred CCCCChHHHHHHHHHHhCCcee
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHI 22 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i 22 (153)
|||+||||+|+.|++.++..++
T Consensus 355 ppG~GKT~lAk~iA~~l~~~~~ 376 (775)
T TIGR00763 355 PPGVGKTSLGKSIAKALNRKFV 376 (775)
T ss_pred CCCCCHHHHHHHHHHHhcCCeE
Confidence 8999999999999999986665
No 280
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.50 E-value=0.021 Score=45.41 Aligned_cols=32 Identities=19% Similarity=0.161 Sum_probs=25.9
Q ss_pred CCCCChHHHHHHHHHHh-------CCceechhHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKY-------GYTHISTGDLLREEV 32 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~-------~~~~i~~~~l~~~~~ 32 (153)
++|+|||.++..++.++ .+.++++.+++.+..
T Consensus 322 ~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~ 360 (617)
T PRK14086 322 ESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFI 360 (617)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHH
Confidence 58999999999999875 246788888887654
No 281
>KOG1970|consensus
Probab=96.48 E-value=0.0019 Score=50.06 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=20.6
Q ss_pred CCCCChHHHHHHHHHHhCCcee
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHI 22 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i 22 (153)
|+||||||..+.|++++|+.++
T Consensus 118 PsGcGKSTtvkvLskelg~~~~ 139 (634)
T KOG1970|consen 118 PSGCGKSTTVKVLSKELGYQLI 139 (634)
T ss_pred CCCCCchhHHHHHHHhhCceee
Confidence 8999999999999999998875
No 282
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.48 E-value=0.0017 Score=45.37 Aligned_cols=15 Identities=40% Similarity=0.492 Sum_probs=13.3
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
++||||||+++.|+-
T Consensus 41 eSGsGKSTL~r~l~G 55 (252)
T COG1124 41 ESGSGKSTLARLLAG 55 (252)
T ss_pred CCCCCHHHHHHHHhc
Confidence 589999999999964
No 283
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.48 E-value=0.0019 Score=52.54 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.3
Q ss_pred CCCCChHHHHHHHHHHhCCceec
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIS 23 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~ 23 (153)
|||+||||+++.++.+++..++.
T Consensus 220 ppGtGKT~laraia~~~~~~~i~ 242 (733)
T TIGR01243 220 PPGTGKTLLAKAVANEAGAYFIS 242 (733)
T ss_pred CCCCChHHHHHHHHHHhCCeEEE
Confidence 79999999999999999876653
No 284
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.47 E-value=0.0021 Score=48.97 Aligned_cols=17 Identities=41% Similarity=0.759 Sum_probs=16.1
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+||||+|++||+-|
T Consensus 271 ~PGaGKsTFaqAlAefy 287 (604)
T COG1855 271 APGAGKSTFAQALAEFY 287 (604)
T ss_pred CCCCChhHHHHHHHHHH
Confidence 79999999999999977
No 285
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=96.47 E-value=0.019 Score=37.98 Aligned_cols=42 Identities=14% Similarity=0.198 Sum_probs=26.8
Q ss_pred CCCCcEeecCCccchhhhh-hhhhh-----hhhHHHHHHHHhhcCCCC
Q psy11030 70 PNSKGYLIDGYPREKAQGE-QFERE-----DVVMELLGEKVLKELPNS 111 (153)
Q Consensus 70 ~~~~~~ildg~p~~~~q~~-~~~~~-----~~~~~~l~~Rl~~R~~~~ 111 (153)
..+.-+|++|.-...-++. .+... .++++++.+||.+|..++
T Consensus 92 ~~G~vvl~NgSRa~Lp~arrry~~Llvv~ita~p~VLaqRL~~RGREs 139 (192)
T COG3709 92 AAGDVVLVNGSRAVLPQARRRYPQLLVVCITASPEVLAQRLAERGRES 139 (192)
T ss_pred hCCCEEEEeccHhhhHHHHHhhhcceeEEEecCHHHHHHHHHHhccCC
Confidence 3355667777643333332 22222 899999999999997655
No 286
>PLN03025 replication factor C subunit; Provisional
Probab=96.46 E-value=0.0021 Score=47.11 Aligned_cols=17 Identities=29% Similarity=0.526 Sum_probs=16.3
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+||||+|+.+++++
T Consensus 42 p~G~GKTtla~~la~~l 58 (319)
T PLN03025 42 PPGTGKTTSILALAHEL 58 (319)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 89999999999999987
No 287
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.46 E-value=0.0023 Score=51.83 Aligned_cols=27 Identities=30% Similarity=0.283 Sum_probs=22.2
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDL 27 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l 27 (153)
|||+||||+|+.+++.++..++.++..
T Consensus 60 PpGtGKTTLA~aIA~~~~~~f~~lna~ 86 (725)
T PRK13341 60 PPGVGKTTLARIIANHTRAHFSSLNAV 86 (725)
T ss_pred CCCCCHHHHHHHHHHHhcCcceeehhh
Confidence 799999999999999988766555443
No 288
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.46 E-value=0.0023 Score=49.85 Aligned_cols=21 Identities=29% Similarity=0.271 Sum_probs=19.0
Q ss_pred CCCCChHHHHHHHHHHhCCce
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTH 21 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~ 21 (153)
|||+||||+|+.+++.+++..
T Consensus 51 p~G~GKTT~ArilAk~Lnc~~ 71 (507)
T PRK06645 51 IRGVGKTTSARIIAKAVNCSA 71 (507)
T ss_pred CCCCCHHHHHHHHHHHhcCcc
Confidence 799999999999999998753
No 289
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.44 E-value=0.0025 Score=41.36 Aligned_cols=29 Identities=21% Similarity=0.253 Sum_probs=21.1
Q ss_pred CCCCChHHHHHHHHHHhC-----CceechhHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYG-----YTHISTGDLLR 29 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~-----~~~i~~~~l~~ 29 (153)
|||+||||++..++.... +.+++.+....
T Consensus 7 ~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 7 PTGSGKTTLALQLALNIATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchH
Confidence 799999999999988762 34555554443
No 290
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.42 E-value=0.0023 Score=49.34 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=18.4
Q ss_pred CCCCChHHHHHHHHHHhCCc
Q psy11030 1 GPGSGKGTQAEKIVQKYGYT 20 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~ 20 (153)
|||+||||+|+.|++.+++.
T Consensus 48 P~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 48 PRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred CCCCCHHHHHHHHHHhcCcc
Confidence 79999999999999999864
No 291
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.002 Score=51.40 Aligned_cols=26 Identities=35% Similarity=0.560 Sum_probs=21.9
Q ss_pred CCCCChHHHHHHHHHHhCCce--echhH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTH--ISTGD 26 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~--i~~~~ 26 (153)
|||+|||++++.+|+.+|-.+ +|++-
T Consensus 358 PPGVGKTSLgkSIA~al~RkfvR~sLGG 385 (782)
T COG0466 358 PPGVGKTSLGKSIAKALGRKFVRISLGG 385 (782)
T ss_pred CCCCCchhHHHHHHHHhCCCEEEEecCc
Confidence 899999999999999998655 45544
No 292
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=96.41 E-value=0.0017 Score=49.12 Aligned_cols=28 Identities=21% Similarity=0.241 Sum_probs=22.7
Q ss_pred CCCCChHHHHHHHHHHhC-----CceechhHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYG-----YTHISTGDLL 28 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~-----~~~i~~~~l~ 28 (153)
|+||||||+++.|...+. ...|+.|++.
T Consensus 220 ~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY 252 (460)
T PLN03046 220 PQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY 252 (460)
T ss_pred CCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence 689999999999987762 4567888876
No 293
>KOG0738|consensus
Probab=96.41 E-value=0.0026 Score=47.52 Aligned_cols=30 Identities=30% Similarity=0.478 Sum_probs=24.2
Q ss_pred CCCCChHHHHHHHHHHhCCcee--chhHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHI--STGDLLRE 30 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i--~~~~l~~~ 30 (153)
|||+|||-+|+++|.+-|-.++ |+..+..+
T Consensus 253 PPGTGKTlLAKAvATEc~tTFFNVSsstltSK 284 (491)
T KOG0738|consen 253 PPGTGKTLLAKAVATECGTTFFNVSSSTLTSK 284 (491)
T ss_pred CCCCcHHHHHHHHHHhhcCeEEEechhhhhhh
Confidence 8999999999999999986655 55555544
No 294
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.38 E-value=0.0025 Score=51.94 Aligned_cols=27 Identities=15% Similarity=0.298 Sum_probs=22.1
Q ss_pred CCCCChHHHHHHHHHHhCCcee--chhHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHI--STGDL 27 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i--~~~~l 27 (153)
|||||||++|+.||+.++.+++ +++++
T Consensus 496 P~GvGKT~lAk~LA~~l~~~~i~id~se~ 524 (758)
T PRK11034 496 PTGVGKTEVTVQLSKALGIELLRFDMSEY 524 (758)
T ss_pred CCCCCHHHHHHHHHHHhCCCcEEeechhh
Confidence 8999999999999999976654 55444
No 295
>PRK08181 transposase; Validated
Probab=96.36 E-value=0.0055 Score=43.93 Aligned_cols=32 Identities=31% Similarity=0.372 Sum_probs=25.9
Q ss_pred CCCCChHHHHHHHHHHh---C--CceechhHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKY---G--YTHISTGDLLREEV 32 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~---~--~~~i~~~~l~~~~~ 32 (153)
|||+|||.++..++.+. | +.++++.+++....
T Consensus 114 p~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~ 150 (269)
T PRK08181 114 PPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQ 150 (269)
T ss_pred cCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHH
Confidence 79999999999998654 4 55678888888754
No 296
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.35 E-value=0.0025 Score=51.13 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.2
Q ss_pred CCCCChHHHHHHHHHHhCCceech
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIST 24 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~ 24 (153)
|||+||||+++.++.+++.+++.+
T Consensus 193 ~~G~GKt~~~~~~a~~~~~~f~~i 216 (644)
T PRK10733 193 PPGTGKTLLAKAIAGEAKVPFFTI 216 (644)
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEE
Confidence 799999999999999999877643
No 297
>KOG1969|consensus
Probab=96.35 E-value=0.0026 Score=51.01 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=21.6
Q ss_pred CCCCChHHHHHHHHHHhCCceec
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIS 23 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~ 23 (153)
|||-||||+|..+|++-|+.++.
T Consensus 334 ppGlGKTTLAHViAkqaGYsVvE 356 (877)
T KOG1969|consen 334 PPGLGKTTLAHVIAKQAGYSVVE 356 (877)
T ss_pred CCCCChhHHHHHHHHhcCceEEE
Confidence 79999999999999999999875
No 298
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.35 E-value=0.0045 Score=48.05 Aligned_cols=79 Identities=13% Similarity=0.196 Sum_probs=43.8
Q ss_pred CCCCChHHHHHHHHHHh---C--CceechhHHHHHHHhcCCcchhHHHHHHHcCCCC-----C----HHHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY---G--YTHISTGDLLREEVNSGSARGADLSKVMKDGGLV-----S----TDVVMELLGEKVL 66 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~---~--~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~-----~----~~~~~~~l~~~~~ 66 (153)
|||+||||++-.++... | ..+++..+-..+....-...|-....+...|... | .+.....+.+.+.
T Consensus 271 ~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~~~~~i~~~i~ 350 (484)
T TIGR02655 271 ATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLEDHLQIIKSEIA 350 (484)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChHHHHHHHHHHHH
Confidence 79999999999998765 3 4566654444443332223343444444443211 1 1334444555554
Q ss_pred hhCCCCCcEeecCCc
Q psy11030 67 KELPNSKGYLIDGYP 81 (153)
Q Consensus 67 ~~~~~~~~~ildg~p 81 (153)
+. ...-+|||+..
T Consensus 351 ~~--~~~~vvIDsi~ 363 (484)
T TIGR02655 351 DF--KPARIAIDSLS 363 (484)
T ss_pred Hc--CCCEEEEcCHH
Confidence 43 23578999873
No 299
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.34 E-value=0.003 Score=42.34 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=18.7
Q ss_pred CCCCChHHHHHHHHHHh-----CCceechh
Q psy11030 1 GPGSGKGTQAEKIVQKY-----GYTHISTG 25 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~-----~~~~i~~~ 25 (153)
|||+|||++|..++... .+.++++.
T Consensus 7 ~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 7 GPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 79999999998886654 34566654
No 300
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.34 E-value=0.0024 Score=39.21 Aligned_cols=14 Identities=29% Similarity=0.454 Sum_probs=12.9
Q ss_pred CCCCChHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIV 14 (153)
Q Consensus 1 ppGsGKst~a~~L~ 14 (153)
|+||||||+++.+.
T Consensus 23 pSGsGKSTLl~~l~ 36 (107)
T cd00820 23 DSGIGKTELALELI 36 (107)
T ss_pred CCCCCHHHHHHHhh
Confidence 78999999999886
No 301
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.30 E-value=0.0025 Score=43.82 Aligned_cols=16 Identities=19% Similarity=0.414 Sum_probs=14.3
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
||||||||+++.|.+.
T Consensus 21 psG~GK~tl~~~L~~~ 36 (206)
T PRK14738 21 PSGVGKDAVLARMRER 36 (206)
T ss_pred cCCCCHHHHHHHHHhc
Confidence 7999999999999764
No 302
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=96.29 E-value=0.0039 Score=40.61 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=17.6
Q ss_pred CCCCChHHHHHHHHHHhCCceec
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIS 23 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~ 23 (153)
|+|+||||+|..|.++ |+.+++
T Consensus 22 ~sG~GKStlal~L~~~-g~~lva 43 (149)
T cd01918 22 PSGIGKSELALELIKR-GHRLVA 43 (149)
T ss_pred CCCCCHHHHHHHHHHc-CCeEEE
Confidence 6899999999888774 666553
No 303
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.29 E-value=0.013 Score=40.77 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=13.3
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
|||+||||++..++.+
T Consensus 28 ~~G~GKT~l~~~~~~~ 43 (229)
T TIGR03881 28 EPGTGKTIFCLHFAYK 43 (229)
T ss_pred CCCCChHHHHHHHHHH
Confidence 6999999999877643
No 304
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.28 E-value=0.0038 Score=39.37 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=16.3
Q ss_pred CCCCChHHHHHHHHHHhCCc
Q psy11030 1 GPGSGKGTQAEKIVQKYGYT 20 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~ 20 (153)
+-||||||+++.+++.+|..
T Consensus 23 dLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 23 DLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp STTSSHHHHHHHHHHHTT--
T ss_pred CCCCCHHHHHHHHHHHcCCC
Confidence 35999999999999998764
No 305
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.27 E-value=0.0037 Score=39.45 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=15.7
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+|||.+++.||+.+
T Consensus 61 ~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 61 WTGTGKNFVSRLIAEHL 77 (127)
T ss_pred CCCCcHHHHHHHHHHHH
Confidence 68999999999999984
No 306
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.27 E-value=0.0033 Score=42.93 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=15.8
Q ss_pred CCCCChHHHHHHHHHHhC
Q psy11030 1 GPGSGKGTQAEKIVQKYG 18 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~ 18 (153)
|+||||||+...|...+.
T Consensus 9 ptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 9 PTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 789999999998887774
No 307
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.27 E-value=0.004 Score=45.29 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=25.2
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDL 27 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l 27 (153)
|.+||||-+|-.||+++|..+||+|..
T Consensus 11 PTAsGKT~lai~LAk~~~~eIIs~DSm 37 (308)
T COG0324 11 PTASGKTALAIALAKRLGGEIISLDSM 37 (308)
T ss_pred CCCcCHHHHHHHHHHHcCCcEEecchh
Confidence 779999999999999999999999875
No 308
>KOG0737|consensus
Probab=96.25 E-value=0.0029 Score=46.74 Aligned_cols=32 Identities=28% Similarity=0.420 Sum_probs=24.9
Q ss_pred CCCCChHHHHHHHHHHhCCceec--hhHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIS--TGDLLREEV 32 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~--~~~l~~~~~ 32 (153)
|||+|||-+|++++++-|..+++ .+.+..+.+
T Consensus 135 PpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWf 168 (386)
T KOG0737|consen 135 PPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWF 168 (386)
T ss_pred CCCchHHHHHHHHHHHcCCCcceeeccccchhhH
Confidence 89999999999999999877764 444444433
No 309
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.25 E-value=0.013 Score=40.94 Aligned_cols=29 Identities=24% Similarity=0.343 Sum_probs=20.2
Q ss_pred CCCCChHHHHHHHHHHh---C--CceechhHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKY---G--YTHISTGDLLR 29 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~---~--~~~i~~~~l~~ 29 (153)
||||||||+|..++... | +.++++++-..
T Consensus 33 ~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~ 66 (234)
T PRK06067 33 DHGTGKSVLSQQFVYGALKQGKKVYVITTENTSK 66 (234)
T ss_pred CCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHH
Confidence 69999999999996553 2 45566544333
No 310
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.25 E-value=0.0028 Score=55.80 Aligned_cols=30 Identities=13% Similarity=0.173 Sum_probs=25.6
Q ss_pred CCCCChHHHHHHHHHHhCCcee--chhHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHI--STGDLLRE 30 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i--~~~~l~~~ 30 (153)
|||+|||.+|++||.+.+++++ +.++++..
T Consensus 1638 PPGTGKTlLAKALA~es~VPFIsISgs~fl~~ 1669 (2281)
T CHL00206 1638 SIGTGRSYLVKYLATNSYVPFITVFLNKFLDN 1669 (2281)
T ss_pred CCCCCHHHHHHHHHHhcCCceEEEEHHHHhhc
Confidence 8999999999999999998765 67777753
No 311
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.23 E-value=0.0037 Score=47.31 Aligned_cols=20 Identities=25% Similarity=0.225 Sum_probs=18.3
Q ss_pred CCCCChHHHHHHHHHHhCCc
Q psy11030 1 GPGSGKGTQAEKIVQKYGYT 20 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~ 20 (153)
|||+||||+|+.+|+.+++.
T Consensus 46 p~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 46 LRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred CCCCCHHHHHHHHHHHhcCC
Confidence 89999999999999999763
No 312
>KOG3078|consensus
Probab=96.22 E-value=0.0044 Score=43.27 Aligned_cols=37 Identities=30% Similarity=0.567 Sum_probs=32.1
Q ss_pred CcEeecCCccchhhhhhhhhh----------hhhHHHHHHHHhhcCC
Q psy11030 73 KGYLIDGYPREKAQGEQFERE----------DVVMELLGEKVLKELP 109 (153)
Q Consensus 73 ~~~ildg~p~~~~q~~~~~~~----------~~~~~~l~~Rl~~R~~ 109 (153)
.+|++||||++..|++.+... .||++.+.+|+..|+.
T Consensus 94 ~~~ildg~Prt~~qa~~l~~~~~~~d~Vi~l~vp~~~L~~ri~~r~i 140 (235)
T KOG3078|consen 94 KGFILDGFPRTVQQAEELLDRIAQIDLVINLKVPEEVLVDRITGRRI 140 (235)
T ss_pred cccccCCCCcchHHHHHHHHccCCcceEEEecCCHHHHHHHHhcccc
Confidence 689999999999988775544 9999999999999964
No 313
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.22 E-value=0.0037 Score=43.09 Aligned_cols=17 Identities=35% Similarity=0.640 Sum_probs=12.7
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+||||+...+...+
T Consensus 25 pPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 25 PPGTGKTTTLASIIAQL 41 (236)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHh
Confidence 89999997665565555
No 314
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.22 E-value=0.0036 Score=48.53 Aligned_cols=20 Identities=30% Similarity=0.268 Sum_probs=17.8
Q ss_pred CCCCChHHHHHHHHHHhCCc
Q psy11030 1 GPGSGKGTQAEKIVQKYGYT 20 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~ 20 (153)
|||+||||+|+.+|+.+++.
T Consensus 43 p~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 43 ASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred CCCccHHHHHHHHHHHHcCc
Confidence 79999999999999988653
No 315
>KOG0733|consensus
Probab=96.21 E-value=0.0032 Score=49.66 Aligned_cols=32 Identities=34% Similarity=0.489 Sum_probs=25.9
Q ss_pred CCCCChHHHHHHHHHHhCCceech--hHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIST--GDLLREEV 32 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~--~~l~~~~~ 32 (153)
|||||||-+|++.|++-|+-++++ -+|+..+.
T Consensus 553 PPGCGKTLlAKAVANEag~NFisVKGPELlNkYV 586 (802)
T KOG0733|consen 553 PPGCGKTLLAKAVANEAGANFISVKGPELLNKYV 586 (802)
T ss_pred CCCccHHHHHHHHhhhccCceEeecCHHHHHHHh
Confidence 899999999999999998777764 35555554
No 316
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.21 E-value=0.0046 Score=41.22 Aligned_cols=24 Identities=42% Similarity=0.577 Sum_probs=18.7
Q ss_pred CCCCChHHHHHHHHHHhC--Cceech
Q psy11030 1 GPGSGKGTQAEKIVQKYG--YTHIST 24 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~--~~~i~~ 24 (153)
|||||||++|..++...+ ..++.+
T Consensus 7 ~~~sGKS~~a~~~~~~~~~~~~y~at 32 (169)
T cd00544 7 GARSGKSRFAERLAAELGGPVTYIAT 32 (169)
T ss_pred CCCCCHHHHHHHHHHhcCCCeEEEEc
Confidence 699999999999998765 334443
No 317
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.20 E-value=0.016 Score=40.64 Aligned_cols=26 Identities=23% Similarity=0.451 Sum_probs=17.8
Q ss_pred CCCCChHHHHHHHHHHh---C--CceechhH
Q psy11030 1 GPGSGKGTQAEKIVQKY---G--YTHISTGD 26 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~---~--~~~i~~~~ 26 (153)
|||||||++|..++.+. | ..++++++
T Consensus 29 ~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 29 GPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 79999999998765542 3 44565433
No 318
>KOG2004|consensus
Probab=96.18 E-value=0.0028 Score=50.74 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=22.2
Q ss_pred CCCCChHHHHHHHHHHhCC--ceechhHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGY--THISTGDL 27 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~--~~i~~~~l 27 (153)
|||+|||++|+.+|+.+|- .-+|++-+
T Consensus 446 PPGVGKTSI~kSIA~ALnRkFfRfSvGG~ 474 (906)
T KOG2004|consen 446 PPGVGKTSIAKSIARALNRKFFRFSVGGM 474 (906)
T ss_pred CCCCCcccHHHHHHHHhCCceEEEecccc
Confidence 8999999999999999984 44566543
No 319
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.17 E-value=0.0041 Score=45.43 Aligned_cols=20 Identities=35% Similarity=0.616 Sum_probs=17.8
Q ss_pred CCCCChHHHHHHHHHHhCCc
Q psy11030 1 GPGSGKGTQAEKIVQKYGYT 20 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~ 20 (153)
|||+||||+++.+++.++..
T Consensus 51 ~~G~GKT~la~~l~~~~~~~ 70 (316)
T PHA02544 51 SPGTGKTTVAKALCNEVGAE 70 (316)
T ss_pred cCCCCHHHHHHHHHHHhCcc
Confidence 79999999999999988654
No 320
>KOG3877|consensus
Probab=96.16 E-value=0.0038 Score=44.67 Aligned_cols=30 Identities=27% Similarity=0.573 Sum_probs=23.8
Q ss_pred CCCCChHHHHHHHHHHhCCceec---hhHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIS---TGDLLRE 30 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~---~~~l~~~ 30 (153)
+-|||||++|+.||+++|+.|+. +|+++-+
T Consensus 79 nI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvd 111 (393)
T KOG3877|consen 79 NIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVD 111 (393)
T ss_pred CcccCchhHHHHHHHHhCCcccccccccceeec
Confidence 45999999999999999987764 5555433
No 321
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.0048 Score=45.07 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=21.3
Q ss_pred CCCCChHHHHHHHHHHhCCceech
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIST 24 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~ 24 (153)
|.|||||-+|+.||+.+++|+--+
T Consensus 105 PTGsGKTlLAqTLAk~LnVPFaiA 128 (408)
T COG1219 105 PTGSGKTLLAQTLAKILNVPFAIA 128 (408)
T ss_pred CCCCcHHHHHHHHHHHhCCCeeec
Confidence 789999999999999999987543
No 322
>PLN02842 nucleotide kinase
Probab=96.15 E-value=0.0058 Score=47.39 Aligned_cols=38 Identities=39% Similarity=0.662 Sum_probs=31.8
Q ss_pred CcEeecCCccchhhhhhhhhh----------hhhHHHHHHHHhhcCCC
Q psy11030 73 KGYLIDGYPREKAQGEQFERE----------DVVMELLGEKVLKELPN 110 (153)
Q Consensus 73 ~~~ildg~p~~~~q~~~~~~~----------~~~~~~l~~Rl~~R~~~ 110 (153)
.+||+||||++..|+..+... +||++++.+|+..|..+
T Consensus 77 ~G~ILDGfPRt~~Qa~~Le~~~~~PDlVI~LDvpdevlleRl~gR~~d 124 (505)
T PLN02842 77 KGWLLDGYPRSFAQAQSLEKLKIRPDIFILLDVPDEILIDRCVGRRLD 124 (505)
T ss_pred CcEEEeCCCCcHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccc
Confidence 469999999999998766533 99999999999988643
No 323
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.15 E-value=0.0041 Score=49.70 Aligned_cols=20 Identities=25% Similarity=0.252 Sum_probs=18.4
Q ss_pred CCCCChHHHHHHHHHHhCCc
Q psy11030 1 GPGSGKGTQAEKIVQKYGYT 20 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~ 20 (153)
|||+||||+|+.||+.+++.
T Consensus 45 PpGvGKTTlAriLAK~LnC~ 64 (702)
T PRK14960 45 TRGVGKTTIARILAKCLNCE 64 (702)
T ss_pred CCCCCHHHHHHHHHHHhCCC
Confidence 79999999999999999863
No 324
>KOG0989|consensus
Probab=96.14 E-value=0.0046 Score=44.82 Aligned_cols=29 Identities=21% Similarity=0.354 Sum_probs=23.1
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLR 29 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~ 29 (153)
|||+|||+.+.+++++++.+..--..++.
T Consensus 65 PpGTGKTStalafar~L~~~~~~~~rvl~ 93 (346)
T KOG0989|consen 65 PPGTGKTSTALAFARALNCEQLFPCRVLE 93 (346)
T ss_pred CCCCcHhHHHHHHHHHhcCccccccchhh
Confidence 89999999999999999885554444443
No 325
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.14 E-value=0.0042 Score=48.49 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=18.4
Q ss_pred CCCCChHHHHHHHHHHhCCc
Q psy11030 1 GPGSGKGTQAEKIVQKYGYT 20 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~ 20 (153)
|||+||||+|+.|++.+++.
T Consensus 46 p~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 46 TRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred CCCCCHHHHHHHHHHHhcCC
Confidence 79999999999999999764
No 326
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.12 E-value=0.0058 Score=35.97 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=19.7
Q ss_pred CCCChHHHHHHHHHHh---CCceechh
Q psy11030 2 PGSGKGTQAEKIVQKY---GYTHISTG 25 (153)
Q Consensus 2 pGsGKst~a~~L~~~~---~~~~i~~~ 25 (153)
+|+||||++..|+..+ |...+-++
T Consensus 8 ~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 8 GGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred CCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 5999999999999988 66665555
No 327
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.11 E-value=0.0044 Score=48.65 Aligned_cols=19 Identities=21% Similarity=0.239 Sum_probs=17.7
Q ss_pred CCCCChHHHHHHHHHHhCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGY 19 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~ 19 (153)
|||+||||+|+.+++.+++
T Consensus 46 p~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 46 TRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred CCCCCHHHHHHHHHHHhCC
Confidence 7999999999999998875
No 328
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.11 E-value=0.0039 Score=46.43 Aligned_cols=28 Identities=29% Similarity=0.527 Sum_probs=20.3
Q ss_pred CCCCChHHHHHHHHHHhC--Ccee--chhHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYG--YTHI--STGDLL 28 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~--~~~i--~~~~l~ 28 (153)
|||+|||.+|-.+++++| .|++ +.++++
T Consensus 58 ppGtGKTAlA~~ia~eLG~~~PF~~isgSEiy 89 (398)
T PF06068_consen 58 PPGTGKTALAMAIAKELGEDVPFVSISGSEIY 89 (398)
T ss_dssp -TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-
T ss_pred CCCCCchHHHHHHHHHhCCCCCeeEcccceee
Confidence 899999999999999997 5654 444443
No 329
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.10 E-value=0.008 Score=46.15 Aligned_cols=32 Identities=25% Similarity=0.276 Sum_probs=25.8
Q ss_pred CCCCChHHHHHHHHHHh-------CCceechhHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKY-------GYTHISTGDLLREEV 32 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~-------~~~~i~~~~l~~~~~ 32 (153)
|||+|||++++.++.++ .+.++++.+++.+..
T Consensus 138 ~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~ 176 (440)
T PRK14088 138 GVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLV 176 (440)
T ss_pred CCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHH
Confidence 79999999999999875 345778888777654
No 330
>PRK04328 hypothetical protein; Provisional
Probab=96.09 E-value=0.018 Score=40.76 Aligned_cols=16 Identities=31% Similarity=0.719 Sum_probs=13.5
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
|||||||++|..++.+
T Consensus 31 ~pGsGKT~l~~~fl~~ 46 (249)
T PRK04328 31 GPGTGKSIFSQQFLWN 46 (249)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 7999999999887654
No 331
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.09 E-value=0.005 Score=42.07 Aligned_cols=17 Identities=29% Similarity=0.454 Sum_probs=15.8
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||.+-+||.++
T Consensus 9 ptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 9 PTGVGKTTTIAKLAARL 25 (196)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCchHhHHHHHHHHH
Confidence 78999999999999887
No 332
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.08 E-value=0.005 Score=41.72 Aligned_cols=17 Identities=41% Similarity=0.604 Sum_probs=14.3
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||||||++-..+.+.+
T Consensus 21 p~GSGKTaLie~~~~~L 37 (202)
T COG0378 21 PPGSGKTALIEKTLRAL 37 (202)
T ss_pred CCCcCHHHHHHHHHHHH
Confidence 79999999987776666
No 333
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.08 E-value=0.0037 Score=44.52 Aligned_cols=33 Identities=24% Similarity=0.422 Sum_probs=26.4
Q ss_pred CCCCChHHHHHHHHHHhCCcee--chhHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHI--STGDLLREEVN 33 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i--~~~~l~~~~~~ 33 (153)
|||+|||-.|+.||.+.+.+++ .+..++-++..
T Consensus 159 ppGTGKTm~Akalane~kvp~l~vkat~liGehVG 193 (368)
T COG1223 159 PPGTGKTMMAKALANEAKVPLLLVKATELIGEHVG 193 (368)
T ss_pred CCCccHHHHHHHHhcccCCceEEechHHHHHHHhh
Confidence 8999999999999999987765 45566666543
No 334
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.06 E-value=0.0045 Score=48.27 Aligned_cols=19 Identities=32% Similarity=0.291 Sum_probs=17.5
Q ss_pred CCCCChHHHHHHHHHHhCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGY 19 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~ 19 (153)
|||+||||+|+.+++.+++
T Consensus 44 ppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 44 PRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 7999999999999999864
No 335
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.05 E-value=0.0048 Score=47.20 Aligned_cols=18 Identities=28% Similarity=0.373 Sum_probs=16.7
Q ss_pred CCCCChHHHHHHHHHHhC
Q psy11030 1 GPGSGKGTQAEKIVQKYG 18 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~ 18 (153)
|||+||||+|+.|+..+.
T Consensus 202 ppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 202 PPGVGKTFVARRLAYLLT 219 (459)
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 799999999999999874
No 336
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.04 E-value=0.0087 Score=42.58 Aligned_cols=32 Identities=34% Similarity=0.398 Sum_probs=26.5
Q ss_pred CCCCChHHHHHHHHHHh---C--CceechhHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKY---G--YTHISTGDLLREEV 32 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~---~--~~~i~~~~l~~~~~ 32 (153)
|||+|||.+|.+|+.++ | +.++++.+++.+..
T Consensus 113 ~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk 149 (254)
T COG1484 113 PPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLK 149 (254)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence 79999999999998887 4 34678889888854
No 337
>PRK05642 DNA replication initiation factor; Validated
Probab=96.03 E-value=0.0086 Score=42.03 Aligned_cols=30 Identities=13% Similarity=0.272 Sum_probs=23.8
Q ss_pred CCCCChHHHHHHHHHHh-----CCceechhHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKY-----GYTHISTGDLLRE 30 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~-----~~~~i~~~~l~~~ 30 (153)
|+|+|||.+++.++.++ .+.+++.++++..
T Consensus 53 ~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~ 87 (234)
T PRK05642 53 KDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR 87 (234)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh
Confidence 68999999999998654 4567888887653
No 338
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.03 E-value=0.0051 Score=45.39 Aligned_cols=17 Identities=35% Similarity=0.423 Sum_probs=15.3
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
||||||||++..|...+
T Consensus 64 ~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 64 VPGVGKSTFIEALGMHL 80 (332)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999987776
No 339
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.02 E-value=0.0046 Score=50.40 Aligned_cols=29 Identities=17% Similarity=0.357 Sum_probs=22.9
Q ss_pred CCCCChHHHHHHHHHHhCCce--echhHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTH--ISTGDLLR 29 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~--i~~~~l~~ 29 (153)
|||+|||++|+.|++.++..+ ++++++..
T Consensus 492 p~GvGKT~lA~~la~~l~~~~~~~d~se~~~ 522 (731)
T TIGR02639 492 PTGVGKTELAKQLAEALGVHLERFDMSEYME 522 (731)
T ss_pred CCCccHHHHHHHHHHHhcCCeEEEeCchhhh
Confidence 899999999999999997644 45555443
No 340
>PRK10646 ADP-binding protein; Provisional
Probab=96.01 E-value=0.0054 Score=40.16 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=16.7
Q ss_pred CCCChHHHHHHHHHHhCC
Q psy11030 2 PGSGKGTQAEKIVQKYGY 19 (153)
Q Consensus 2 pGsGKst~a~~L~~~~~~ 19 (153)
-|+||||+++.|++.+|+
T Consensus 37 LGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 37 LGAGKTTFSRGFLQALGH 54 (153)
T ss_pred CCCCHHHHHHHHHHHcCC
Confidence 499999999999999986
No 341
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.01 E-value=0.0047 Score=50.90 Aligned_cols=20 Identities=20% Similarity=0.239 Sum_probs=18.4
Q ss_pred CCCCChHHHHHHHHHHhCCc
Q psy11030 1 GPGSGKGTQAEKIVQKYGYT 20 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~ 20 (153)
|||+||||+|+.|++.+++.
T Consensus 46 PpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 46 TRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred CCCCCHHHHHHHHHHhccCc
Confidence 79999999999999999764
No 342
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.00 E-value=0.005 Score=50.49 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=19.9
Q ss_pred CCCCChHHHHHHHHHHhCCcee
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHI 22 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i 22 (153)
|||+||||+++.+++.++..++
T Consensus 357 ppG~GKTtl~~~ia~~l~~~~~ 378 (784)
T PRK10787 357 PPGVGKTSLGQSIAKATGRKYV 378 (784)
T ss_pred CCCCCHHHHHHHHHHHhCCCEE
Confidence 8999999999999999987664
No 343
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.98 E-value=0.0045 Score=48.76 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=18.3
Q ss_pred CCCCChHHHHHHHHHHhC-Ccee
Q psy11030 1 GPGSGKGTQAEKIVQKYG-YTHI 22 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~-~~~i 22 (153)
|||+||||+|+.|++-+. ++++
T Consensus 111 PpG~GKSsLa~~la~~le~~~~Y 133 (644)
T PRK15455 111 PVGGGKSSLAERLKSLMERVPIY 133 (644)
T ss_pred CCCCCchHHHHHHHHHHHhCcce
Confidence 899999999999999773 4443
No 344
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.96 E-value=0.0057 Score=40.93 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=15.8
Q ss_pred CCCCChHHHHHHHHHHhC
Q psy11030 1 GPGSGKGTQAEKIVQKYG 18 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~ 18 (153)
++||||||+.+.|...+.
T Consensus 14 ~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 14 WSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CCCChHHHHHHHHHHHHh
Confidence 689999999999988774
No 345
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.94 E-value=0.0047 Score=45.81 Aligned_cols=15 Identities=33% Similarity=0.357 Sum_probs=13.7
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
|+||||||+-+.||-
T Consensus 39 PSGcGKTTlLR~IAG 53 (352)
T COG3842 39 PSGCGKTTLLRMIAG 53 (352)
T ss_pred CCCCCHHHHHHHHhC
Confidence 899999999999964
No 346
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=95.93 E-value=0.0056 Score=42.00 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=14.4
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||||||++|+.+..-+
T Consensus 30 ppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 30 PPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -CCCTHHHHHHHHHHCS
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 79999999999998754
No 347
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.93 E-value=0.0059 Score=47.90 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=18.3
Q ss_pred CCCCChHHHHHHHHHHhCCc
Q psy11030 1 GPGSGKGTQAEKIVQKYGYT 20 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~ 20 (153)
|||+||||+|+.+++.+++.
T Consensus 46 p~G~GKTt~A~~lAk~l~c~ 65 (527)
T PRK14969 46 TRGVGKTTLARILAKSLNCE 65 (527)
T ss_pred CCCCCHHHHHHHHHHHhcCC
Confidence 79999999999999999763
No 348
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.92 E-value=0.0062 Score=43.17 Aligned_cols=17 Identities=29% Similarity=0.685 Sum_probs=15.2
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+||||+...|...|
T Consensus 37 ~PGaGKSTli~~l~~~~ 53 (266)
T PF03308_consen 37 PPGAGKSTLIDALIREL 53 (266)
T ss_dssp -TTSSHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHH
Confidence 79999999999999887
No 349
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.90 E-value=0.0072 Score=39.02 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=15.4
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.+|||||+++.|.+.+
T Consensus 8 ~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 8 PKNSGKTTLIRKLINEL 24 (140)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 57999999999998877
No 350
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.89 E-value=0.0074 Score=40.60 Aligned_cols=18 Identities=39% Similarity=0.709 Sum_probs=16.5
Q ss_pred CCCCChHHHHHHHHHHhC
Q psy11030 1 GPGSGKGTQAEKIVQKYG 18 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~ 18 (153)
|+||||+|+++.|.+.+.
T Consensus 10 psg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 10 PSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp STTSSHHHHHHHHHHHST
T ss_pred CCCCCHHHHHHHHHHhcc
Confidence 789999999999999874
No 351
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.89 E-value=0.0071 Score=39.73 Aligned_cols=17 Identities=35% Similarity=0.448 Sum_probs=15.4
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
++||||||++..|.+.+
T Consensus 7 ~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 7 PKNSGKTTLIERLVKAL 23 (155)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 58999999999999876
No 352
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.88 E-value=0.007 Score=33.32 Aligned_cols=17 Identities=35% Similarity=0.380 Sum_probs=13.5
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+-.++.--+
T Consensus 31 ~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 31 PNGSGKSTLLDAIQTVL 47 (62)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 57999999998876533
No 353
>KOG1533|consensus
Probab=95.88 E-value=0.004 Score=43.50 Aligned_cols=17 Identities=41% Similarity=0.530 Sum_probs=14.0
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
||||||||.|--+.+-|
T Consensus 10 PPgSGKsTYc~g~~~fl 26 (290)
T KOG1533|consen 10 PPGSGKSTYCNGMSQFL 26 (290)
T ss_pred CCCCCccchhhhHHHHH
Confidence 89999999997666554
No 354
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=95.87 E-value=0.0066 Score=39.40 Aligned_cols=18 Identities=33% Similarity=0.453 Sum_probs=16.4
Q ss_pred CCCChHHHHHHHHHHhCC
Q psy11030 2 PGSGKGTQAEKIVQKYGY 19 (153)
Q Consensus 2 pGsGKst~a~~L~~~~~~ 19 (153)
=|+||||+++.+++.+|.
T Consensus 34 LGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 34 LGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CcCChHHHHHHHHHHcCC
Confidence 399999999999999985
No 355
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.85 E-value=0.0068 Score=43.56 Aligned_cols=17 Identities=35% Similarity=0.429 Sum_probs=15.6
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+||||++..||..+
T Consensus 80 ~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 80 VNGVGKTTTIAKLANKL 96 (272)
T ss_pred CCCCcHHHHHHHHHHHH
Confidence 79999999999999877
No 356
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.84 E-value=0.0057 Score=42.98 Aligned_cols=15 Identities=33% Similarity=0.375 Sum_probs=13.6
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
|+||||||+-+.+|-
T Consensus 37 pSGcGKSTLLriiAG 51 (248)
T COG1116 37 PSGCGKSTLLRLIAG 51 (248)
T ss_pred CCCCCHHHHHHHHhC
Confidence 799999999998865
No 357
>KOG0735|consensus
Probab=95.84 E-value=0.0059 Score=49.00 Aligned_cols=32 Identities=31% Similarity=0.430 Sum_probs=27.2
Q ss_pred CCCCChHHHHHHHHHHhCCceechh--HHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTG--DLLREEV 32 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~--~l~~~~~ 32 (153)
|||+|||.+|.+++..+++.+||+. +++.+++
T Consensus 709 ppGcGKT~la~a~a~~~~~~fisvKGPElL~KyI 742 (952)
T KOG0735|consen 709 PPGCGKTLLASAIASNSNLRFISVKGPELLSKYI 742 (952)
T ss_pred CCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHh
Confidence 8999999999999999999999853 5666654
No 358
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.80 E-value=0.0072 Score=44.39 Aligned_cols=17 Identities=41% Similarity=0.575 Sum_probs=15.9
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||++..||..+
T Consensus 122 pnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 122 VNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCCCcHHHHHHHHHHHH
Confidence 79999999999999877
No 359
>PHA03136 thymidine kinase; Provisional
Probab=95.80 E-value=0.086 Score=39.53 Aligned_cols=21 Identities=10% Similarity=0.097 Sum_probs=17.8
Q ss_pred HhCCCCeEEEeecCcchhh-hc
Q psy11030 132 EINSPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 132 ~~~~~~~vi~l~~~~~~~~-~l 152 (153)
..+.||++||++.+.+++. |+
T Consensus 188 ~~p~pD~IIyL~l~~e~~~~RI 209 (378)
T PHA03136 188 DEPHGGNIVIMDLDECEHAERI 209 (378)
T ss_pred CCCCCCEEEEEeCCHHHHHHHH
Confidence 3457899999999999988 76
No 360
>COG4240 Predicted kinase [General function prediction only]
Probab=95.80 E-value=0.0093 Score=41.63 Aligned_cols=32 Identities=34% Similarity=0.414 Sum_probs=24.6
Q ss_pred CCCCChHHHHHHHHHHh---C---CceechhHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKY---G---YTHISTGDLLREEV 32 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~---~---~~~i~~~~l~~~~~ 32 (153)
|-||||||++..|...+ | ...+|+||++....
T Consensus 58 pQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYltha 95 (300)
T COG4240 58 PQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHA 95 (300)
T ss_pred CCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcchH
Confidence 57999999999887766 3 34679999986543
No 361
>KOG0729|consensus
Probab=95.79 E-value=0.01 Score=42.44 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=27.0
Q ss_pred CCCCChHHHHHHHHHHhCCceec--hhHHHHHHHhc
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIS--TGDLLREEVNS 34 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~--~~~l~~~~~~~ 34 (153)
|||+|||-+|++.|++-+..+|. -++++.++..+
T Consensus 219 ppgtgktl~aravanrtdacfirvigselvqkyvge 254 (435)
T KOG0729|consen 219 PPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGE 254 (435)
T ss_pred CCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhh
Confidence 89999999999999999877764 35666666544
No 362
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.78 E-value=0.0077 Score=40.12 Aligned_cols=17 Identities=24% Similarity=0.472 Sum_probs=14.4
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
+||+||||+.+.+.+.+
T Consensus 32 ~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 32 ESGSGKTSLLRALLDRL 48 (185)
T ss_dssp -TTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 68999999999887776
No 363
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.75 E-value=0.0081 Score=41.47 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=19.3
Q ss_pred CCCCChHHHHHHHHHHh-----CCceechh
Q psy11030 1 GPGSGKGTQAEKIVQKY-----GYTHISTG 25 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~-----~~~~i~~~ 25 (153)
+|||||||+|..++... +..+++++
T Consensus 27 ~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 27 PPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 69999999999998765 23466554
No 364
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=95.75 E-value=0.0096 Score=43.34 Aligned_cols=26 Identities=12% Similarity=0.061 Sum_probs=22.2
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDL 27 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l 27 (153)
|.|||||.+|-.||++ +..+||+|..
T Consensus 12 pTasGKS~LAl~LA~~-~~eIIsaDS~ 37 (300)
T PRK14729 12 PTAVGKSNILFHFPKG-KAEIINVDSI 37 (300)
T ss_pred CCccCHHHHHHHHHHh-CCcEEeccHH
Confidence 7899999999999999 5588887764
No 365
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=95.75 E-value=0.0083 Score=41.07 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=15.3
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+.+.+...+
T Consensus 9 ~~GsGKTTll~~l~~~l 25 (199)
T TIGR00101 9 PVGSGKTALIEALTRAL 25 (199)
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 68999999999998875
No 366
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.75 E-value=0.015 Score=44.04 Aligned_cols=32 Identities=22% Similarity=0.248 Sum_probs=24.9
Q ss_pred CCCCChHHHHHHHHHHh-----C--CceechhHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKY-----G--YTHISTGDLLREEV 32 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~-----~--~~~i~~~~l~~~~~ 32 (153)
|||+|||++++.+++++ + +.++++.++..+..
T Consensus 144 ~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~ 182 (405)
T TIGR00362 144 GVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFV 182 (405)
T ss_pred CCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHH
Confidence 79999999999999876 3 45678877766543
No 367
>KOG0651|consensus
Probab=95.74 E-value=0.012 Score=42.82 Aligned_cols=33 Identities=21% Similarity=0.435 Sum_probs=26.6
Q ss_pred CCCCChHHHHHHHHHHhCCc--eechhHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKYGYT--HISTGDLLREEVN 33 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~--~i~~~~l~~~~~~ 33 (153)
|||.|||-+|++++..+|+- .++++.+..+++.
T Consensus 174 ppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiG 208 (388)
T KOG0651|consen 174 PPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIG 208 (388)
T ss_pred CCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcc
Confidence 89999999999999999754 4577777766543
No 368
>KOG0736|consensus
Probab=95.73 E-value=0.0068 Score=49.01 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=22.7
Q ss_pred CCCCChHHHHHHHHHHhCCceech
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIST 24 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~ 24 (153)
|||+|||-+||++|-++.+.++|+
T Consensus 713 PPGTGKTLlAKAVATEcsL~FlSV 736 (953)
T KOG0736|consen 713 PPGTGKTLLAKAVATECSLNFLSV 736 (953)
T ss_pred CCCCchHHHHHHHHhhceeeEEee
Confidence 899999999999999999998885
No 369
>KOG2028|consensus
Probab=95.71 E-value=0.0069 Score=45.16 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=18.7
Q ss_pred CCCCChHHHHHHHHHHhC---Cceech
Q psy11030 1 GPGSGKGTQAEKIVQKYG---YTHIST 24 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~---~~~i~~ 24 (153)
|||+||||+|+.|+..-. +.+|.+
T Consensus 170 ppG~GKTtlArlia~tsk~~Syrfvel 196 (554)
T KOG2028|consen 170 PPGTGKTTLARLIASTSKKHSYRFVEL 196 (554)
T ss_pred CCCCchHHHHHHHHhhcCCCceEEEEE
Confidence 899999999999987653 345543
No 370
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.71 E-value=0.0087 Score=48.83 Aligned_cols=17 Identities=35% Similarity=0.550 Sum_probs=16.2
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+|||++++.|++++
T Consensus 211 ~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 211 EPGVGKTAIAEGLALRI 227 (731)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999999987
No 371
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=95.70 E-value=0.032 Score=41.47 Aligned_cols=95 Identities=21% Similarity=0.269 Sum_probs=54.5
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCC-HHHHHHHHHHHHhhhCCCCCcEeecC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVS-TDVVMELLGEKVLKELPNSKGYLIDG 79 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~ildg 79 (153)
+.|||||++...|.+. +..++++.++.+.. ++..|... ..-| .......+...+.... ....+++++
T Consensus 149 ~TGsGKT~iL~~L~~~-~~~vlDlE~~aehr---GS~fG~~~-------~~qpsQ~~Fe~~l~~~l~~~~-~~~~i~vE~ 216 (345)
T PRK11784 149 NTGSGKTELLQALANA-GAQVLDLEGLANHR---GSSFGRLG-------GPQPSQKDFENLLAEALLKLD-PARPIVVED 216 (345)
T ss_pred CCcccHHHHHHHHHhc-CCeEEECCchhhhc---cccccCCC-------CCCcchHHHHHHHHHHHHcCC-CCCeEEEEe
Confidence 5799999999999764 78899998877662 12222111 1111 1223344555555542 245677775
Q ss_pred Cccchhhh-------hhhhhh-----hhhHHHHHHHHhhc
Q psy11030 80 YPREKAQG-------EQFERE-----DVVMELLGEKVLKE 107 (153)
Q Consensus 80 ~p~~~~q~-------~~~~~~-----~~~~~~l~~Rl~~R 107 (153)
--+..... +.+... .+|.+.+.+|+.+-
T Consensus 217 Es~~IG~~~lP~~l~~~m~~~~~v~i~~~~e~Rv~~l~~~ 256 (345)
T PRK11784 217 ESRRIGRVHLPEALYEAMQQAPIVVVEAPLEERVERLLED 256 (345)
T ss_pred ccccccCccCCHHHHHHHhhCCEEEEECCHHHHHHHHHHH
Confidence 53332221 111111 88999999998853
No 372
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.68 E-value=0.0091 Score=40.93 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=19.8
Q ss_pred CCCCChHHHHHHHHHHh---C--CceechhH
Q psy11030 1 GPGSGKGTQAEKIVQKY---G--YTHISTGD 26 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~---~--~~~i~~~~ 26 (153)
|||||||++|..++... | ..++++..
T Consensus 20 ~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 20 PPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 79999999999988654 3 55666653
No 373
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.68 E-value=0.0081 Score=40.57 Aligned_cols=17 Identities=35% Similarity=0.487 Sum_probs=15.2
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+.+.|...+
T Consensus 33 ~tGSGKTTll~aL~~~i 49 (186)
T cd01130 33 GTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCCCCHHHHHHHHHhhc
Confidence 68999999999998765
No 374
>PRK13695 putative NTPase; Provisional
Probab=95.68 E-value=0.0094 Score=39.72 Aligned_cols=17 Identities=41% Similarity=0.499 Sum_probs=14.9
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
+|||||||+++.++..+
T Consensus 8 ~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 8 PPGVGKTTLVLKIAELL 24 (174)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 68999999999987765
No 375
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.67 E-value=0.0077 Score=48.22 Aligned_cols=20 Identities=25% Similarity=0.280 Sum_probs=18.3
Q ss_pred CCCCChHHHHHHHHHHhCCc
Q psy11030 1 GPGSGKGTQAEKIVQKYGYT 20 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~ 20 (153)
|||+||||+|+.+++.+++.
T Consensus 46 p~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 46 TRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred CCCCCHHHHHHHHHHhhhhc
Confidence 79999999999999999773
No 376
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.67 E-value=0.0098 Score=39.26 Aligned_cols=17 Identities=41% Similarity=0.505 Sum_probs=15.6
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
++||||||+++.|...+
T Consensus 9 ~~gsGKTTli~~L~~~l 25 (159)
T cd03116 9 YSGSGKTTLLEKLIPAL 25 (159)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 58999999999999987
No 377
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=95.66 E-value=0.0082 Score=41.72 Aligned_cols=17 Identities=41% Similarity=0.640 Sum_probs=15.3
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
+|||||||..+.+.+..
T Consensus 6 ~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 6 VPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 69999999999998874
No 378
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.0064 Score=42.36 Aligned_cols=21 Identities=38% Similarity=0.381 Sum_probs=17.0
Q ss_pred CCCCChHHHHHHHHHHhCCce
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTH 21 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~ 21 (153)
|.||||||++..|+-+-++.+
T Consensus 38 PNGsGKSTLa~~i~G~p~Y~V 58 (251)
T COG0396 38 PNGSGKSTLAYTIMGHPKYEV 58 (251)
T ss_pred CCCCCHHHHHHHHhCCCCceE
Confidence 789999999999977655543
No 379
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.65 E-value=0.0073 Score=41.74 Aligned_cols=14 Identities=36% Similarity=0.375 Sum_probs=12.5
Q ss_pred CCCCChHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIV 14 (153)
Q Consensus 1 ppGsGKst~a~~L~ 14 (153)
|+||||||+.+-|.
T Consensus 36 pSGSGKSTlLRclN 49 (240)
T COG1126 36 PSGSGKSTLLRCLN 49 (240)
T ss_pred CCCCCHHHHHHHHH
Confidence 89999999999873
No 380
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.64 E-value=0.0091 Score=43.18 Aligned_cols=17 Identities=35% Similarity=0.573 Sum_probs=15.1
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
+|||||||+...+.+.+
T Consensus 112 ~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 112 SPGSGKTTLLTETLMRL 128 (290)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 69999999999888875
No 381
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.63 E-value=0.0095 Score=47.24 Aligned_cols=20 Identities=20% Similarity=0.205 Sum_probs=18.1
Q ss_pred CCCCChHHHHHHHHHHhCCc
Q psy11030 1 GPGSGKGTQAEKIVQKYGYT 20 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~ 20 (153)
|||+||||+|+.+|+.+.+.
T Consensus 46 P~GvGKTTlA~~lAk~L~C~ 65 (605)
T PRK05896 46 PRGIGKTSIAKIFAKAINCL 65 (605)
T ss_pred CCCCCHHHHHHHHHHHhcCC
Confidence 79999999999999998653
No 382
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.62 E-value=0.0075 Score=44.50 Aligned_cols=15 Identities=33% Similarity=0.390 Sum_probs=13.6
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
|+||||||+-+.+|-
T Consensus 37 PSGcGKSTlLr~IAG 51 (338)
T COG3839 37 PSGCGKSTLLRMIAG 51 (338)
T ss_pred CCCCCHHHHHHHHhC
Confidence 899999999999964
No 383
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.61 E-value=0.015 Score=44.77 Aligned_cols=32 Identities=19% Similarity=0.206 Sum_probs=25.1
Q ss_pred CCCCChHHHHHHHHHHh-----C--CceechhHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKY-----G--YTHISTGDLLREEV 32 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~-----~--~~~i~~~~l~~~~~ 32 (153)
|||+|||++++.++.++ + +.++++.++..+..
T Consensus 156 ~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~ 194 (450)
T PRK00149 156 GVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFV 194 (450)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHH
Confidence 79999999999999887 2 34678877765543
No 384
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.60 E-value=0.0095 Score=41.71 Aligned_cols=17 Identities=12% Similarity=0.397 Sum_probs=12.7
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+||||+|..++..+
T Consensus 32 ~~G~GKTtl~~~~~~~~ 48 (230)
T PRK08533 32 DESTGKSILSQRLAYGF 48 (230)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 69999999985554433
No 385
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.59 E-value=0.011 Score=43.93 Aligned_cols=30 Identities=27% Similarity=0.451 Sum_probs=22.8
Q ss_pred CCCCChHHHHHHHHHHhC--Ccee--chhHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYG--YTHI--STGDLLRE 30 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~--~~~i--~~~~l~~~ 30 (153)
|||+|||-+|-.+++++| .|++ +.++++..
T Consensus 73 ppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~ 106 (450)
T COG1224 73 PPGTGKTALAMGIARELGEDVPFVAISGSEIYSL 106 (450)
T ss_pred CCCCcHHHHHHHHHHHhCCCCCceeeccceeeee
Confidence 899999999999999997 4554 44444433
No 386
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=95.56 E-value=0.0086 Score=38.74 Aligned_cols=15 Identities=40% Similarity=0.457 Sum_probs=13.4
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
|.||||||+++.|..
T Consensus 9 ~~g~GKTTL~q~L~~ 23 (143)
T PF10662_consen 9 PSGSGKTTLAQALNG 23 (143)
T ss_pred CCCCCHHHHHHHHcC
Confidence 689999999999966
No 387
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.55 E-value=0.0086 Score=41.17 Aligned_cols=17 Identities=29% Similarity=0.362 Sum_probs=14.9
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+..+
T Consensus 35 ~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 35 PSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999998754
No 388
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.55 E-value=0.009 Score=46.19 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=16.3
Q ss_pred CCCCChHHHHHHHHHHhC
Q psy11030 1 GPGSGKGTQAEKIVQKYG 18 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~ 18 (153)
|||+|||++|+.|++..+
T Consensus 47 pPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 47 PPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred CCChhHHHHHHHHHHHhc
Confidence 799999999999999764
No 389
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.55 E-value=0.0092 Score=39.86 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=13.9
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
|+||||||+-+.+|.
T Consensus 37 PSG~GKStllk~va~ 51 (223)
T COG4619 37 PSGCGKSTLLKIVAS 51 (223)
T ss_pred CCCccHHHHHHHHHh
Confidence 899999999999987
No 390
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.54 E-value=0.011 Score=47.32 Aligned_cols=20 Identities=25% Similarity=0.225 Sum_probs=18.5
Q ss_pred CCCCChHHHHHHHHHHhCCc
Q psy11030 1 GPGSGKGTQAEKIVQKYGYT 20 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~ 20 (153)
|||+||||+|+.|++.+++.
T Consensus 46 p~GvGKttlA~~lAk~L~c~ 65 (620)
T PRK14954 46 LRGVGKTTAARVFAKAVNCQ 65 (620)
T ss_pred CCCCCHHHHHHHHHHHhCCC
Confidence 79999999999999999874
No 391
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.54 E-value=0.009 Score=41.63 Aligned_cols=15 Identities=33% Similarity=0.330 Sum_probs=13.1
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
|+||||||+-..|+-
T Consensus 39 pSGSGKSTLLniig~ 53 (226)
T COG1136 39 PSGSGKSTLLNLLGG 53 (226)
T ss_pred CCCCCHHHHHHHHhc
Confidence 799999999998754
No 392
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.54 E-value=0.01 Score=47.28 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=17.9
Q ss_pred CCCCChHHHHHHHHHHhCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGY 19 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~ 19 (153)
|+|+||||+|+.|++.+++
T Consensus 46 p~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 46 TRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred CCCCCHHHHHHHHHHHhcC
Confidence 7899999999999999986
No 393
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.53 E-value=0.01 Score=44.46 Aligned_cols=17 Identities=29% Similarity=0.472 Sum_probs=15.3
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+|+||||++..|+..+
T Consensus 145 ptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 145 PTGVGKTTTTAKLAARC 161 (374)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999999764
No 394
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.53 E-value=0.0088 Score=41.26 Aligned_cols=17 Identities=29% Similarity=0.196 Sum_probs=14.9
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+..+
T Consensus 38 ~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 38 PSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCCCHHHHHHHHhCCc
Confidence 68999999999998754
No 395
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.0072 Score=47.72 Aligned_cols=29 Identities=28% Similarity=0.474 Sum_probs=23.5
Q ss_pred CCCCChHHHHHHHHHHhCCceec--hhHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIS--TGDLLR 29 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~--~~~l~~ 29 (153)
|||+|||.+|++.+-+-++++++ -++++.
T Consensus 191 pPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe 221 (596)
T COG0465 191 PPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 221 (596)
T ss_pred CCCCCcHHHHHHHhcccCCCceeccchhhhh
Confidence 89999999999999999988654 444443
No 396
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.51 E-value=0.0091 Score=41.01 Aligned_cols=17 Identities=24% Similarity=0.223 Sum_probs=14.6
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+.+.|+..+
T Consensus 33 ~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 33 PNGAGKTTLMRILATLT 49 (211)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998643
No 397
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.50 E-value=0.009 Score=41.19 Aligned_cols=17 Identities=29% Similarity=0.290 Sum_probs=14.9
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+.+.|+..+
T Consensus 37 ~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 37 HSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998754
No 398
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=95.49 E-value=0.012 Score=38.33 Aligned_cols=17 Identities=29% Similarity=0.591 Sum_probs=15.4
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
++||||||++..++..+
T Consensus 7 ~~GsGKTt~~~~l~~~~ 23 (148)
T cd03114 7 VPGAGKSTLIDALITAL 23 (148)
T ss_pred CCCCcHHHHHHHHHHHH
Confidence 58999999999999876
No 399
>PRK13768 GTPase; Provisional
Probab=95.48 E-value=0.011 Score=42.01 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=15.1
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||++..++..+
T Consensus 10 ~~G~GKTt~~~~~~~~l 26 (253)
T PRK13768 10 TAGSGKTTLTKALSDWL 26 (253)
T ss_pred CCCccHHHHHHHHHHHH
Confidence 68999999999888776
No 400
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=95.48 E-value=0.0068 Score=42.14 Aligned_cols=28 Identities=18% Similarity=0.160 Sum_probs=20.4
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLRE 30 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~ 30 (153)
+||+||||+|+.|+. ...+++.+.....
T Consensus 20 ~~G~GKtt~a~~~~~--~~~~~~~d~~~~~ 47 (220)
T TIGR01618 20 KPGTGKTSTIKYLPG--KTLVLSFDMSSKV 47 (220)
T ss_pred CCCCCHHHHHHhcCC--CCEEEeccccchh
Confidence 699999999998863 3556777665443
No 401
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.47 E-value=0.0095 Score=40.25 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=14.4
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+..+
T Consensus 26 ~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 26 ANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999997643
No 402
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=95.46 E-value=0.01 Score=42.05 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=16.4
Q ss_pred CCCCChHHHHHHHHHHhCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGY 19 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~ 19 (153)
|+|+||||+++.+++....
T Consensus 24 ~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 24 PPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCCCCHHHHHHHHHhcccc
Confidence 6899999999999987643
No 403
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=95.45 E-value=0.069 Score=42.80 Aligned_cols=33 Identities=18% Similarity=0.131 Sum_probs=25.2
Q ss_pred CCCCChHHHHHHHHHHhCCc-----------eechhHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKYGYT-----------HISTGDLLREEVN 33 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~-----------~i~~~~l~~~~~~ 33 (153)
|||+||||+|+.|++.++.. ..+.+++++....
T Consensus 45 ~pG~GKT~la~~la~~l~~~~~~~~~~~~n~~~~~~~~~~~v~~ 88 (608)
T TIGR00764 45 EPGVGKSMLAKAMAELLPDEELEDILVYPNPEDPNMPRIVEVPA 88 (608)
T ss_pred CCCCCHHHHHHHHHHHcCchhheeEEEEeCCCCCchHHHHHHHH
Confidence 79999999999999998644 2345677766554
No 404
>KOG0727|consensus
Probab=95.42 E-value=0.018 Score=40.96 Aligned_cols=35 Identities=20% Similarity=0.396 Sum_probs=27.0
Q ss_pred CCCCChHHHHHHHHHHhCCcee--chhHHHHHHHhcC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHI--STGDLLREEVNSG 35 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i--~~~~l~~~~~~~~ 35 (153)
|||+|||-++++.|.+-...+| .-++++.+++.++
T Consensus 197 ppg~gktml~kava~~t~a~firvvgsefvqkylgeg 233 (408)
T KOG0727|consen 197 PPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEG 233 (408)
T ss_pred CCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccC
Confidence 8999999999999998865544 4567777766543
No 405
>KOG0991|consensus
Probab=95.41 E-value=0.012 Score=41.34 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=16.0
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+||||....||+++
T Consensus 56 pPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 56 PPGTGKTTSILCLAREL 72 (333)
T ss_pred CCCCchhhHHHHHHHHH
Confidence 89999999999999987
No 406
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.41 E-value=0.012 Score=46.69 Aligned_cols=20 Identities=20% Similarity=0.340 Sum_probs=18.4
Q ss_pred CCCCChHHHHHHHHHHhCCc
Q psy11030 1 GPGSGKGTQAEKIVQKYGYT 20 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~ 20 (153)
|+|+||||+|+.|++.+++.
T Consensus 43 p~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 43 PRGCGKTSSARILARSLNCA 62 (584)
T ss_pred CCCCCHHHHHHHHHHHhccc
Confidence 79999999999999999864
No 407
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=95.40 E-value=0.013 Score=42.19 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=15.7
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
++||||||++..|...|
T Consensus 9 ~~gSGKTTLi~~Li~~L 25 (274)
T PRK14493 9 YKATGKTTLVERLVDRL 25 (274)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999999988
No 408
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.39 E-value=0.01 Score=40.95 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=14.7
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+.+.|+..+
T Consensus 36 ~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 36 HNGAGKTTTLKMLTGEL 52 (220)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998644
No 409
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.38 E-value=0.013 Score=42.38 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=19.6
Q ss_pred CCCCChHHHHHHHHHHh----C---CceechhH
Q psy11030 1 GPGSGKGTQAEKIVQKY----G---YTHISTGD 26 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~----~---~~~i~~~~ 26 (153)
|+||||||++..|+..+ | +.++++|.
T Consensus 202 ptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 202 PTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 78999999999998766 2 23566654
No 410
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.38 E-value=0.009 Score=37.95 Aligned_cols=17 Identities=29% Similarity=0.331 Sum_probs=14.6
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+.+.|+..+
T Consensus 19 ~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 19 PNGSGKSTLLKALAGLL 35 (137)
T ss_dssp STTSSHHHHHHHHTTSS
T ss_pred cCCCccccceeeecccc
Confidence 57999999999997655
No 411
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.38 E-value=0.011 Score=40.63 Aligned_cols=17 Identities=29% Similarity=0.237 Sum_probs=14.7
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+..+
T Consensus 35 ~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 35 PNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999997654
No 412
>PHA02624 large T antigen; Provisional
Probab=95.37 E-value=0.014 Score=46.18 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=20.9
Q ss_pred CCCCChHHHHHHHHHHhCCceech
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIST 24 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~ 24 (153)
||||||||+|..|.+.+|-..+++
T Consensus 439 PpnTGKTtf~~sLl~~L~G~vlsV 462 (647)
T PHA02624 439 PVNSGKTTLAAALLDLCGGKSLNV 462 (647)
T ss_pred CCCCCHHHHHHHHHHHcCCeEEEe
Confidence 899999999999999996666664
No 413
>KOG0734|consensus
Probab=95.36 E-value=0.0091 Score=46.55 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=22.2
Q ss_pred CCCCChHHHHHHHHHHhCCceech
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIST 24 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~ 24 (153)
|||+|||-+|+++|-+-|++++.+
T Consensus 345 PPGTGKTlLARAvAGEA~VPFF~~ 368 (752)
T KOG0734|consen 345 PPGTGKTLLARAVAGEAGVPFFYA 368 (752)
T ss_pred CCCCchhHHHHHhhcccCCCeEec
Confidence 899999999999999999998763
No 414
>PRK04296 thymidine kinase; Provisional
Probab=95.36 E-value=0.012 Score=39.87 Aligned_cols=17 Identities=29% Similarity=0.339 Sum_probs=15.2
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+||||.+..++.++
T Consensus 10 ~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 10 AMNSGKSTELLQRAYNY 26 (190)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 57999999999988877
No 415
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.35 E-value=0.011 Score=40.61 Aligned_cols=17 Identities=29% Similarity=0.253 Sum_probs=14.8
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+..+
T Consensus 34 ~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 34 PSGCGKTTTLRMIAGLE 50 (213)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998754
No 416
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.35 E-value=0.011 Score=40.53 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=14.7
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+..+
T Consensus 34 ~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 34 PNGAGKTTTIRMILGII 50 (210)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998643
No 417
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.35 E-value=0.014 Score=39.79 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=15.1
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+||||+.+.+.+.+
T Consensus 26 ~aGtGKT~~l~~~~~~~ 42 (196)
T PF13604_consen 26 PAGTGKTTLLKALAEAL 42 (196)
T ss_dssp STTSTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999887766
No 418
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.35 E-value=0.011 Score=40.67 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=14.6
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+..+
T Consensus 36 ~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 36 PSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999997653
No 419
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.35 E-value=0.028 Score=43.29 Aligned_cols=31 Identities=19% Similarity=0.198 Sum_probs=24.0
Q ss_pred CCCCChHHHHHHHHHHh---C--CceechhHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKY---G--YTHISTGDLLREE 31 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~---~--~~~i~~~~l~~~~ 31 (153)
|||+|||++++.++.++ + +.+++.+++....
T Consensus 149 ~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~ 184 (445)
T PRK12422 149 PEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHL 184 (445)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHH
Confidence 79999999999999876 2 4567777666543
No 420
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.33 E-value=0.011 Score=41.29 Aligned_cols=17 Identities=41% Similarity=0.395 Sum_probs=14.7
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+..+
T Consensus 34 ~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 34 PSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998654
No 421
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.027 Score=45.97 Aligned_cols=32 Identities=16% Similarity=0.253 Sum_probs=28.1
Q ss_pred CCCCChHHHHHHHHHHhC-----CceechhHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYG-----YTHISTGDLLREEV 32 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~-----~~~i~~~~l~~~~~ 32 (153)
|.|+|||.+|+.||+.+. +..+++++++.++.
T Consensus 529 PTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHs 565 (786)
T COG0542 529 PTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHS 565 (786)
T ss_pred CCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHH
Confidence 789999999999999983 56789999998865
No 422
>PRK14974 cell division protein FtsY; Provisional
Probab=95.32 E-value=0.014 Score=43.26 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=14.7
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
||||||||++..|+..+
T Consensus 148 ~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 148 VNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 69999999888888766
No 423
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.32 E-value=0.014 Score=42.54 Aligned_cols=17 Identities=35% Similarity=0.530 Sum_probs=15.3
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
||||||||++..|+..+
T Consensus 42 ~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 42 TPGAGKSTLLEALGMEL 58 (300)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 69999999999988866
No 424
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.32 E-value=0.012 Score=39.42 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=14.8
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+.+.|+..+
T Consensus 36 ~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 36 RSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCCCHHHHHHHHhccC
Confidence 68999999999998754
No 425
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.31 E-value=0.011 Score=41.17 Aligned_cols=17 Identities=29% Similarity=0.218 Sum_probs=15.0
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+..+
T Consensus 39 ~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 39 RSGAGKSTLIRCINGLE 55 (233)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998754
No 426
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.31 E-value=0.014 Score=42.23 Aligned_cols=17 Identities=35% Similarity=0.544 Sum_probs=16.0
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
+||+||||+...|..+|
T Consensus 59 ~PGaGKSTli~~L~~~l 75 (323)
T COG1703 59 VPGAGKSTLIEALGREL 75 (323)
T ss_pred CCCCchHHHHHHHHHHH
Confidence 69999999999999988
No 427
>KOG1534|consensus
Probab=95.31 E-value=0.01 Score=40.86 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=14.4
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||.|+.+-++-
T Consensus 11 pAgSGKSTyC~~~~~h~ 27 (273)
T KOG1534|consen 11 PAGSGKSTYCSSMYEHC 27 (273)
T ss_pred cCCCCcchHHHHHHHHH
Confidence 78999999999986554
No 428
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.31 E-value=0.011 Score=40.88 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=14.5
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+.+.|+..+
T Consensus 34 ~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 34 RNGAGKTTLLKTIMGLL 50 (222)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999997643
No 429
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=95.30 E-value=0.01 Score=41.42 Aligned_cols=17 Identities=29% Similarity=0.198 Sum_probs=14.6
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+..+
T Consensus 34 ~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 34 PNGAGKTTLFNLISGFL 50 (236)
T ss_pred CCCCCHHHHHHHHcCCC
Confidence 68999999999997643
No 430
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.30 E-value=0.012 Score=39.37 Aligned_cols=17 Identities=35% Similarity=0.265 Sum_probs=14.5
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+..+
T Consensus 34 ~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 34 PSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999997643
No 431
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.30 E-value=0.012 Score=41.39 Aligned_cols=17 Identities=29% Similarity=0.278 Sum_probs=14.7
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+..+
T Consensus 36 ~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 36 PSGAGKSTLLRCINRLV 52 (243)
T ss_pred CCCCCHHHHHHHHhCCc
Confidence 68999999999997644
No 432
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.30 E-value=0.0093 Score=47.70 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=18.5
Q ss_pred CCCCChHHHHHHHHHHhCCce
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTH 21 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~ 21 (153)
|||+||||+++.+++.++..+
T Consensus 118 P~GsGKTTl~~~la~~l~~~~ 138 (637)
T TIGR00602 118 PSGCGKSTTIKILSKELGIQV 138 (637)
T ss_pred CCCCCHHHHHHHHHHHhhhHH
Confidence 799999999999999887543
No 433
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.29 E-value=0.014 Score=47.08 Aligned_cols=20 Identities=25% Similarity=0.300 Sum_probs=18.2
Q ss_pred CCCCChHHHHHHHHHHhCCc
Q psy11030 1 GPGSGKGTQAEKIVQKYGYT 20 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~ 20 (153)
|||+||||+|+.|++.+++.
T Consensus 46 P~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 46 TRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred CCCCcHHHHHHHHHHHhccc
Confidence 78999999999999998764
No 434
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.28 E-value=0.013 Score=42.72 Aligned_cols=27 Identities=30% Similarity=0.373 Sum_probs=20.6
Q ss_pred CCCCChHHHHHHHHHHh-----CCceechhHH
Q psy11030 1 GPGSGKGTQAEKIVQKY-----GYTHISTGDL 27 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~-----~~~~i~~~~l 27 (153)
|+||||||+++.|.... +..++.+.+.
T Consensus 140 ~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~ 171 (299)
T TIGR02782 140 GTGSGKTTLANALLAEIAKNDPTDRVVIIEDT 171 (299)
T ss_pred CCCCCHHHHHHHHHHHhhccCCCceEEEECCc
Confidence 68999999999998875 3455665553
No 435
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.28 E-value=0.012 Score=40.17 Aligned_cols=17 Identities=35% Similarity=0.225 Sum_probs=14.8
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+.+.|+..+
T Consensus 32 ~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 32 ESGSGKSTLLNIIGLLE 48 (206)
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999998654
No 436
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.27 E-value=0.011 Score=41.53 Aligned_cols=16 Identities=31% Similarity=0.268 Sum_probs=13.6
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
|+||||||+.+.|+--
T Consensus 38 ~nGsGKSTL~~~l~GL 53 (235)
T COG1122 38 PNGSGKSTLLKLLNGL 53 (235)
T ss_pred CCCCCHHHHHHHHcCc
Confidence 6899999999988653
No 437
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.26 E-value=0.012 Score=41.22 Aligned_cols=17 Identities=24% Similarity=0.206 Sum_probs=14.6
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+..+
T Consensus 35 ~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 35 PSGAGKSTLLRCLNGLV 51 (241)
T ss_pred CCCCCHHHHHHHHhCCc
Confidence 68999999999998643
No 438
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.26 E-value=0.012 Score=41.25 Aligned_cols=17 Identities=35% Similarity=0.249 Sum_probs=14.8
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+..+
T Consensus 36 ~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 36 PSGSGKTTLLRLIAGLE 52 (239)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999997654
No 439
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.26 E-value=0.013 Score=38.86 Aligned_cols=17 Identities=18% Similarity=0.366 Sum_probs=14.7
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+++.|+..+
T Consensus 35 ~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 35 PSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999997654
No 440
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.25 E-value=0.014 Score=48.40 Aligned_cols=17 Identities=35% Similarity=0.589 Sum_probs=16.2
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+|||++++.|+...
T Consensus 207 ~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 207 EPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 79999999999999987
No 441
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.25 E-value=0.012 Score=40.40 Aligned_cols=17 Identities=29% Similarity=0.208 Sum_probs=14.6
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+..+
T Consensus 34 ~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 34 PSGCGKTTLLRLIAGLE 50 (213)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999997643
No 442
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.25 E-value=0.012 Score=40.22 Aligned_cols=17 Identities=29% Similarity=0.313 Sum_probs=14.7
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+..+
T Consensus 34 ~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 34 KNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999997744
No 443
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.25 E-value=0.016 Score=40.29 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=19.9
Q ss_pred CCCCChHHHHHHHHHHh-----CCceechh
Q psy11030 1 GPGSGKGTQAEKIVQKY-----GYTHISTG 25 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~-----~~~~i~~~ 25 (153)
|||||||++|..++... ++.++++.
T Consensus 31 ~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 31 PPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 79999999999998754 35567776
No 444
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.25 E-value=0.012 Score=40.34 Aligned_cols=17 Identities=35% Similarity=0.208 Sum_probs=14.7
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+-.+
T Consensus 34 ~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 34 PSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998644
No 445
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.25 E-value=0.015 Score=35.82 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=14.5
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
++||||||+.+.|....
T Consensus 7 ~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 7 DSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp STTSSHHHHHHHHHHSS
T ss_pred cCCCCHHHHHHHHhcCC
Confidence 58999999999998743
No 446
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.24 E-value=0.013 Score=41.00 Aligned_cols=17 Identities=29% Similarity=0.225 Sum_probs=14.8
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+..+
T Consensus 43 ~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 43 SSGSGKSTLLHLLGGLD 59 (233)
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999998654
No 447
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.22 E-value=0.013 Score=40.59 Aligned_cols=17 Identities=29% Similarity=0.237 Sum_probs=14.6
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+..+
T Consensus 38 ~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 38 PSGCGKSTLLRIIAGLE 54 (220)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999997643
No 448
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.21 E-value=0.013 Score=40.70 Aligned_cols=17 Identities=24% Similarity=0.243 Sum_probs=15.1
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+..+
T Consensus 34 ~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 34 PSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCCCCHHHHHHHHHhhc
Confidence 68999999999998765
No 449
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.20 E-value=0.014 Score=38.95 Aligned_cols=17 Identities=29% Similarity=0.311 Sum_probs=14.7
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+..+
T Consensus 34 ~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 34 PNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999997753
No 450
>PTZ00202 tuzin; Provisional
Probab=95.19 E-value=0.088 Score=40.64 Aligned_cols=33 Identities=33% Similarity=0.423 Sum_probs=23.4
Q ss_pred CCCCChHHHHHHHHHHhCCcee-----chhHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHI-----STGDLLREEVN 33 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i-----~~~~l~~~~~~ 33 (153)
|+|+||||+++.+....+...+ ..+++++..+.
T Consensus 294 ~~G~GKTTLlR~~~~~l~~~qL~vNprg~eElLr~LL~ 331 (550)
T PTZ00202 294 FRGCGKSSLCRSAVRKEGMPAVFVDVRGTEDTLRSVVK 331 (550)
T ss_pred CCCCCHHHHHHHHHhcCCceEEEECCCCHHHHHHHHHH
Confidence 6899999999999988874432 34555555443
No 451
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.19 E-value=0.013 Score=40.45 Aligned_cols=17 Identities=29% Similarity=0.225 Sum_probs=14.8
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+..+
T Consensus 39 ~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 39 SSGSGKSTLLHLLGGLD 55 (221)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999997654
No 452
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.18 E-value=0.015 Score=46.28 Aligned_cols=20 Identities=30% Similarity=0.425 Sum_probs=18.4
Q ss_pred CCCCChHHHHHHHHHHhCCc
Q psy11030 1 GPGSGKGTQAEKIVQKYGYT 20 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~ 20 (153)
|+|+||||+|+.|++.+++.
T Consensus 54 p~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 54 VRGVGKTTTARILARALNYE 73 (598)
T ss_pred CCCCCHHHHHHHHHHhhCcC
Confidence 79999999999999999765
No 453
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.16 E-value=0.014 Score=39.64 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=14.8
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+.+.|+..+
T Consensus 34 ~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 34 ANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999997754
No 454
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.16 E-value=0.015 Score=39.47 Aligned_cols=17 Identities=29% Similarity=0.313 Sum_probs=15.2
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+|+||||+.+.|....
T Consensus 36 pSGAGKSTllkLi~~~e 52 (223)
T COG2884 36 PSGAGKSTLLKLIYGEE 52 (223)
T ss_pred CCCCCHHHHHHHHHhhh
Confidence 78999999999997765
No 455
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.16 E-value=0.013 Score=41.11 Aligned_cols=17 Identities=29% Similarity=0.323 Sum_probs=14.8
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+..+
T Consensus 37 ~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 37 PSGAGKSTLIKLINRLI 53 (241)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998754
No 456
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.16 E-value=0.013 Score=40.78 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=14.8
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+.+.|+..+
T Consensus 34 ~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 34 RNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998654
No 457
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.15 E-value=0.017 Score=46.31 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=18.0
Q ss_pred CCCCChHHHHHHHHHHhCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGY 19 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~ 19 (153)
|+|+||||+|+.|++.+++
T Consensus 46 P~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 46 TRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred CCCCCHHHHHHHHHHHhcC
Confidence 7899999999999999987
No 458
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.14 E-value=0.012 Score=40.44 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=14.6
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+..+
T Consensus 33 ~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 33 PNGAGKSTLLKAILGLL 49 (213)
T ss_pred CCCCCHHHHHHHHcCCC
Confidence 68999999999997654
No 459
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.14 E-value=0.016 Score=44.40 Aligned_cols=17 Identities=41% Similarity=0.558 Sum_probs=15.7
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
++||||||++..||..+
T Consensus 103 ~~GsGKTTtaakLA~~L 119 (437)
T PRK00771 103 LQGSGKTTTAAKLARYF 119 (437)
T ss_pred CCCCcHHHHHHHHHHHH
Confidence 68999999999999877
No 460
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.13 E-value=0.013 Score=39.36 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=14.6
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+..+
T Consensus 33 ~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 33 PNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCChHHHHHHHHHcCC
Confidence 68999999999997643
No 461
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=95.13 E-value=0.014 Score=40.83 Aligned_cols=17 Identities=29% Similarity=0.434 Sum_probs=14.6
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+..+
T Consensus 35 ~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 35 PNGAGKSTLFSLLTRLY 51 (236)
T ss_pred CCCCCHHHHHHHHhCCc
Confidence 68999999999998643
No 462
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.12 E-value=0.017 Score=43.06 Aligned_cols=17 Identities=18% Similarity=0.433 Sum_probs=15.4
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+|||++++.+.+++
T Consensus 48 ~~GtGKT~l~~~~~~~l 64 (365)
T TIGR02928 48 KTGTGKTAVTKYVMKEL 64 (365)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999998765
No 463
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.11 E-value=0.015 Score=40.30 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=14.7
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+..+
T Consensus 34 ~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 34 PNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998643
No 464
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=95.10 E-value=0.014 Score=40.50 Aligned_cols=17 Identities=35% Similarity=0.470 Sum_probs=14.9
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+.+.|+..+
T Consensus 41 ~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 41 SSGSGKTTLLDAISGRV 57 (226)
T ss_pred CCCCCHHHHHHHHhCcc
Confidence 68999999999998654
No 465
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.10 E-value=0.017 Score=43.44 Aligned_cols=17 Identities=35% Similarity=0.704 Sum_probs=15.7
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+||||+++.+++++
T Consensus 63 ~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 63 PPGTGKTTTVKKVFEEL 79 (394)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999999876
No 466
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.09 E-value=0.015 Score=40.20 Aligned_cols=16 Identities=38% Similarity=0.524 Sum_probs=14.1
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
|.||||||+.+.|+..
T Consensus 21 ~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 21 APGSGKTTLTRLLCGL 36 (213)
T ss_pred CCCCCHHHHHHHHhCC
Confidence 6899999999999754
No 467
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=95.09 E-value=0.017 Score=41.26 Aligned_cols=17 Identities=24% Similarity=0.208 Sum_probs=15.5
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
+||+||||+|+.|+.-+
T Consensus 90 svavGKST~ar~L~~ll 106 (283)
T COG1072 90 SVAVGKSTTARILQALL 106 (283)
T ss_pred CccccHHHHHHHHHHHH
Confidence 68999999999998877
No 468
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.08 E-value=0.018 Score=41.98 Aligned_cols=17 Identities=35% Similarity=0.587 Sum_probs=15.9
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+||||+++.+++.+
T Consensus 46 ~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 46 PPGTGKTTAALALAREL 62 (319)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999999986
No 469
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=95.08 E-value=0.015 Score=40.86 Aligned_cols=17 Identities=18% Similarity=0.165 Sum_probs=14.7
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+.+.|+..+
T Consensus 36 ~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 36 PSGAGKSSLLRVLNLLE 52 (242)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998654
No 470
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=95.08 E-value=0.021 Score=35.62 Aligned_cols=17 Identities=29% Similarity=0.292 Sum_probs=15.2
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
.+|+||||++..|+..+
T Consensus 7 kgG~GKTt~a~~la~~l 23 (116)
T cd02034 7 KGGVGKTTIAALLARYL 23 (116)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999998877
No 471
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.08 E-value=0.019 Score=43.49 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=17.9
Q ss_pred CCCCChHHHHHHHHHHhCCc
Q psy11030 1 GPGSGKGTQAEKIVQKYGYT 20 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~ 20 (153)
|||+||||+|+.+++.+.+.
T Consensus 44 p~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 44 PPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred CCCCcHHHHHHHHHHHhCCC
Confidence 89999999999999988654
No 472
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.08 E-value=0.016 Score=38.55 Aligned_cols=17 Identities=35% Similarity=0.558 Sum_probs=15.0
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+.+.|+..+
T Consensus 36 ~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 36 PSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCCCCHHHHHHHHHcCC
Confidence 68999999999998764
No 473
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.08 E-value=0.02 Score=38.63 Aligned_cols=17 Identities=41% Similarity=0.546 Sum_probs=15.3
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+||||++..++..+
T Consensus 40 ~~g~GKT~~~~~l~~~~ 56 (193)
T PF13481_consen 40 PPGSGKTTLALQLAAAL 56 (193)
T ss_dssp CSTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999998876
No 474
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=95.07 E-value=0.015 Score=41.16 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=14.9
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+.+.|+..+
T Consensus 37 ~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 37 ESGSGKSTLLGCLAGRL 53 (253)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998754
No 475
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.07 E-value=0.018 Score=46.90 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=18.3
Q ss_pred CCCCChHHHHHHHHHHhCCc
Q psy11030 1 GPGSGKGTQAEKIVQKYGYT 20 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~ 20 (153)
|+|+||||+++.|++.+++.
T Consensus 46 PpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 46 TRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred CCCCCHHHHHHHHHHHhcCc
Confidence 68999999999999999864
No 476
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.07 E-value=0.016 Score=38.61 Aligned_cols=17 Identities=41% Similarity=0.434 Sum_probs=14.9
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+..+
T Consensus 36 ~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 36 PSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCCCHHHHHHHHHhcc
Confidence 68999999999998754
No 477
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.07 E-value=0.015 Score=39.08 Aligned_cols=17 Identities=24% Similarity=0.202 Sum_probs=14.9
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+.+.|+..+
T Consensus 34 ~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 34 LVGNGQTELAEALFGLR 50 (182)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998754
No 478
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.07 E-value=0.015 Score=40.50 Aligned_cols=17 Identities=35% Similarity=0.260 Sum_probs=14.5
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+..+
T Consensus 34 ~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 34 PNGAGKTTTFYMIVGLV 50 (232)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999997643
No 479
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.06 E-value=0.058 Score=42.02 Aligned_cols=15 Identities=20% Similarity=0.295 Sum_probs=13.1
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
||||||||+|..++.
T Consensus 29 ~pGsGKT~la~qfl~ 43 (484)
T TIGR02655 29 TSGTGKTLFSIQFLY 43 (484)
T ss_pred CCCCCHHHHHHHHHH
Confidence 799999999998843
No 480
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.06 E-value=0.015 Score=40.56 Aligned_cols=17 Identities=41% Similarity=0.507 Sum_probs=14.9
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+..+
T Consensus 36 ~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 36 PSGSGKSTLVNLIPRFY 52 (234)
T ss_pred CCCCCHHHHHHHHhccc
Confidence 68999999999998754
No 481
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=95.06 E-value=0.022 Score=37.61 Aligned_cols=30 Identities=37% Similarity=0.420 Sum_probs=23.0
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEV 32 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~ 32 (153)
|-.|||||++.+||..||-+ +..+..|+.+
T Consensus 16 ~ESsGKStLv~kLA~~fnt~--~~wEY~Re~v 45 (187)
T COG3172 16 GESSGKSTLVNKLANIFNTT--SAWEYGREYV 45 (187)
T ss_pred CcccChHHHHHHHHHHhCCC--chhHHHHHHH
Confidence 34799999999999999875 3456666655
No 482
>PRK13764 ATPase; Provisional
Probab=95.05 E-value=0.017 Score=45.99 Aligned_cols=18 Identities=39% Similarity=0.726 Sum_probs=16.4
Q ss_pred CCCCChHHHHHHHHHHhC
Q psy11030 1 GPGSGKGTQAEKIVQKYG 18 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~ 18 (153)
||||||||++..|+..+.
T Consensus 265 ~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 265 APGAGKSTFAQALAEFYA 282 (602)
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 799999999999998874
No 483
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=95.05 E-value=0.015 Score=41.27 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=14.9
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+++.|+..+
T Consensus 40 ~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 40 ESGSGKTTLLNALSARL 56 (258)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998754
No 484
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.05 E-value=0.015 Score=39.98 Aligned_cols=17 Identities=29% Similarity=0.284 Sum_probs=14.7
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+..+
T Consensus 31 ~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 31 ASGAGKSTLLRCIAGLE 47 (214)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999997654
No 485
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.04 E-value=0.019 Score=45.74 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=18.1
Q ss_pred CCCCChHHHHHHHHHHhCCc
Q psy11030 1 GPGSGKGTQAEKIVQKYGYT 20 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~ 20 (153)
|||+||||+|+.|++.+++.
T Consensus 46 p~G~GKTtlA~~lA~~l~c~ 65 (585)
T PRK14950 46 PRGVGKTSTARILAKAVNCT 65 (585)
T ss_pred CCCCCHHHHHHHHHHHhcCC
Confidence 79999999999999998753
No 486
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=95.04 E-value=0.016 Score=40.94 Aligned_cols=17 Identities=35% Similarity=0.179 Sum_probs=14.7
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+.+.|+..+
T Consensus 37 ~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 37 PSGSGKTTLLRCINLLE 53 (250)
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999998654
No 487
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.03 E-value=0.016 Score=39.33 Aligned_cols=15 Identities=27% Similarity=0.415 Sum_probs=13.7
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
|+||||||+.+.|+-
T Consensus 41 ~nGsGKSTLl~~l~G 55 (192)
T cd03232 41 ESGAGKTTLLDVLAG 55 (192)
T ss_pred CCCCCHHHHHHHHhC
Confidence 689999999999985
No 488
>KOG0741|consensus
Probab=95.03 E-value=0.019 Score=44.77 Aligned_cols=27 Identities=37% Similarity=0.570 Sum_probs=22.6
Q ss_pred CCCCChHHHHHHHHHHhCCcee---chhHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHI---STGDL 27 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i---~~~~l 27 (153)
|||||||++|..+|..-+++++ |..++
T Consensus 546 p~~sGKTaLAA~iA~~S~FPFvKiiSpe~m 575 (744)
T KOG0741|consen 546 PPGSGKTALAAKIALSSDFPFVKIISPEDM 575 (744)
T ss_pred CCCCChHHHHHHHHhhcCCCeEEEeChHHc
Confidence 8999999999999999888764 55444
No 489
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.02 E-value=0.025 Score=46.99 Aligned_cols=30 Identities=13% Similarity=0.295 Sum_probs=23.0
Q ss_pred CCCCChHHHHHHHHHHh---C--CceechhHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKY---G--YTHISTGDLLRE 30 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~---~--~~~i~~~~l~~~ 30 (153)
|||+||||+|+.|++.+ + +..++++++...
T Consensus 606 p~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~ 640 (857)
T PRK10865 606 PTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEK 640 (857)
T ss_pred CCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhh
Confidence 79999999999999876 2 345677666543
No 490
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.02 E-value=0.019 Score=41.00 Aligned_cols=25 Identities=12% Similarity=0.129 Sum_probs=18.8
Q ss_pred CCCCChHHHHHHHHHHh-----CCceechh
Q psy11030 1 GPGSGKGTQAEKIVQKY-----GYTHISTG 25 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~-----~~~~i~~~ 25 (153)
|||+||||+|..++.+. ...++++.
T Consensus 44 ~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 44 VSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 79999999999886653 34566654
No 491
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.02 E-value=0.016 Score=38.80 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=14.7
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+.+.|+..+
T Consensus 33 ~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 33 PNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999997754
No 492
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=95.02 E-value=0.016 Score=41.28 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=14.8
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+.+.|+..+
T Consensus 47 ~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 47 PSGCGKSTLLRTFNRMY 63 (260)
T ss_pred CCCCCHHHHHHHHhccc
Confidence 68999999999998653
No 493
>PRK10867 signal recognition particle protein; Provisional
Probab=95.01 E-value=0.019 Score=44.01 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=18.5
Q ss_pred CCCCChHHHHHHHHHHh----C--Cceechh
Q psy11030 1 GPGSGKGTQAEKIVQKY----G--YTHISTG 25 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~----~--~~~i~~~ 25 (153)
|+||||||++..||..+ | ..++++|
T Consensus 108 ~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D 138 (433)
T PRK10867 108 LQGAGKTTTAGKLAKYLKKKKKKKVLLVAAD 138 (433)
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 68999999888887755 3 3456665
No 494
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.01 E-value=0.016 Score=40.27 Aligned_cols=17 Identities=24% Similarity=0.298 Sum_probs=14.6
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+..+
T Consensus 41 ~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 41 PSGCGKSTLLKIVASLI 57 (225)
T ss_pred CCCCCHHHHHHHHhccc
Confidence 68999999999998643
No 495
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=95.01 E-value=0.015 Score=40.73 Aligned_cols=16 Identities=38% Similarity=0.491 Sum_probs=14.3
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
|.||||||+.+.|+..
T Consensus 34 ~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 34 PNGSGKSTLSKTIAGH 49 (243)
T ss_pred CCCCCHHHHHHHHhCC
Confidence 6899999999999864
No 496
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.00 E-value=0.016 Score=40.27 Aligned_cols=17 Identities=41% Similarity=0.483 Sum_probs=14.7
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+..+
T Consensus 39 ~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 39 ESGSGKSTLARAILGLL 55 (228)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998654
No 497
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.00 E-value=0.015 Score=37.55 Aligned_cols=17 Identities=29% Similarity=0.376 Sum_probs=14.7
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+.+.|+..+
T Consensus 34 ~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 34 RNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCCCHHHHHHHHcCCC
Confidence 68999999999997754
No 498
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.99 E-value=0.017 Score=39.97 Aligned_cols=17 Identities=24% Similarity=0.243 Sum_probs=14.3
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+-+.|-+-.
T Consensus 41 PSGcGKST~LR~lNRmn 57 (253)
T COG1117 41 PSGCGKSTLLRCLNRMN 57 (253)
T ss_pred CCCcCHHHHHHHHHhhc
Confidence 89999999999886543
No 499
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=94.99 E-value=0.016 Score=40.46 Aligned_cols=17 Identities=29% Similarity=0.341 Sum_probs=14.8
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+..+
T Consensus 20 ~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 20 ESGSGKSLTCLAILGLL 36 (230)
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999998754
No 500
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.98 E-value=0.017 Score=39.40 Aligned_cols=17 Identities=29% Similarity=0.309 Sum_probs=14.6
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+.+.|+..+
T Consensus 35 ~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 35 SNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999997654
Done!