Query psy11030
Match_columns 153
No_of_seqs 135 out of 1231
Neff 10.3
Searched_HMMs 29240
Date Fri Aug 16 16:21:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11030.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11030hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3umf_A Adenylate kinase; rossm 100.0 2.3E-28 7.7E-33 167.3 13.2 113 1-152 37-150 (217)
2 3sr0_A Adenylate kinase; phosp 99.9 3.5E-27 1.2E-31 160.6 10.9 105 1-109 8-126 (206)
3 3gmt_A Adenylate kinase; ssgci 99.9 3.2E-26 1.1E-30 157.3 12.4 112 1-152 16-128 (230)
4 3tlx_A Adenylate kinase 2; str 99.9 5.9E-21 2E-25 133.0 11.0 107 1-108 37-157 (243)
5 3be4_A Adenylate kinase; malar 99.8 9.1E-20 3.1E-24 125.0 12.3 107 1-108 13-133 (217)
6 3dl0_A Adenylate kinase; phosp 99.8 3.4E-20 1.2E-24 126.8 10.0 107 1-108 8-128 (216)
7 3fb4_A Adenylate kinase; psych 99.8 7.6E-20 2.6E-24 125.1 11.5 107 1-108 8-128 (216)
8 1e4v_A Adenylate kinase; trans 99.8 1.6E-19 5.5E-24 123.4 11.7 112 1-152 8-120 (214)
9 1aky_A Adenylate kinase; ATP:A 99.8 2.1E-19 7.3E-24 123.3 11.4 108 1-108 12-133 (220)
10 1ak2_A Adenylate kinase isoenz 99.8 2.9E-19 9.8E-24 123.7 11.7 107 1-108 24-144 (233)
11 2c95_A Adenylate kinase 1; tra 99.8 8.3E-19 2.8E-23 118.0 12.6 108 1-108 17-134 (196)
12 1zak_A Adenylate kinase; ATP:A 99.8 2.8E-19 9.5E-24 122.9 10.2 113 1-152 13-126 (222)
13 2xb4_A Adenylate kinase; ATP-b 99.8 9.7E-19 3.3E-23 120.4 11.9 106 1-108 8-127 (223)
14 2bwj_A Adenylate kinase 5; pho 99.8 1.9E-18 6.5E-23 116.5 12.6 109 1-109 20-138 (199)
15 2cdn_A Adenylate kinase; phosp 99.8 2.8E-18 9.6E-23 116.1 11.3 107 1-108 28-148 (201)
16 1ukz_A Uridylate kinase; trans 99.8 7.8E-18 2.7E-22 114.0 12.8 114 1-152 23-138 (203)
17 1zd8_A GTP:AMP phosphotransfer 99.8 3.9E-18 1.3E-22 117.5 11.4 106 1-108 15-129 (227)
18 1qf9_A UMP/CMP kinase, protein 99.8 1.5E-17 5.3E-22 111.4 12.6 106 1-108 14-132 (194)
19 3cm0_A Adenylate kinase; ATP-b 99.7 3.1E-17 1.1E-21 109.5 11.0 102 1-108 12-127 (186)
20 1tev_A UMP-CMP kinase; ploop, 99.7 7E-17 2.4E-21 108.3 12.8 108 1-108 11-135 (196)
21 3lw7_A Adenylate kinase relate 99.6 1.5E-15 5E-20 100.1 8.4 138 1-150 9-167 (179)
22 4i1u_A Dephospho-COA kinase; s 99.6 1E-14 3.4E-19 99.0 9.3 139 1-150 17-192 (210)
23 2bbw_A Adenylate kinase 4, AK4 99.5 2.7E-13 9.2E-18 94.3 12.2 106 1-108 35-149 (246)
24 1jjv_A Dephospho-COA kinase; P 99.4 7.6E-13 2.6E-17 89.6 8.6 32 1-33 10-41 (206)
25 3t61_A Gluconokinase; PSI-biol 99.4 4.7E-12 1.6E-16 85.4 10.8 97 1-108 26-132 (202)
26 3vaa_A Shikimate kinase, SK; s 99.4 8.7E-13 3E-17 89.0 6.7 94 1-105 33-136 (199)
27 1ly1_A Polynucleotide kinase; 99.3 6.4E-12 2.2E-16 83.0 9.2 99 1-108 10-127 (181)
28 2grj_A Dephospho-COA kinase; T 99.3 6.5E-12 2.2E-16 84.4 9.2 34 1-34 20-53 (192)
29 2pt5_A Shikimate kinase, SK; a 99.3 7.9E-12 2.7E-16 81.8 9.5 97 1-108 8-114 (168)
30 2pbr_A DTMP kinase, thymidylat 99.3 6.3E-12 2.2E-16 84.0 8.3 48 1-54 8-58 (195)
31 2f6r_A COA synthase, bifunctio 99.3 8.3E-12 2.8E-16 88.5 9.0 140 1-150 83-259 (281)
32 2z0h_A DTMP kinase, thymidylat 99.3 1.8E-11 6.3E-16 81.9 10.1 116 1-152 8-139 (197)
33 2rhm_A Putative kinase; P-loop 99.3 1.2E-11 4.1E-16 82.6 9.0 102 1-109 13-127 (193)
34 1vht_A Dephospho-COA kinase; s 99.3 1E-11 3.5E-16 84.7 8.0 33 1-34 12-44 (218)
35 1y63_A LMAJ004144AAA protein; 99.3 1.1E-11 3.9E-16 82.5 7.9 98 1-108 18-122 (184)
36 1zuh_A Shikimate kinase; alpha 99.3 1.2E-11 4.2E-16 81.0 7.6 32 1-32 15-46 (168)
37 3trf_A Shikimate kinase, SK; a 99.2 1.6E-11 5.4E-16 81.6 6.6 32 1-32 13-44 (185)
38 2if2_A Dephospho-COA kinase; a 99.2 2.6E-11 8.8E-16 81.8 7.7 32 1-33 9-40 (204)
39 4eun_A Thermoresistant glucoki 99.2 1.3E-10 4.3E-15 78.4 10.4 98 1-108 37-146 (200)
40 4eaq_A DTMP kinase, thymidylat 99.2 5.7E-11 1.9E-15 81.9 8.6 117 1-152 34-166 (229)
41 1ltq_A Polynucleotide kinase; 99.2 1E-10 3.5E-15 83.4 10.2 101 1-108 10-127 (301)
42 1nks_A Adenylate kinase; therm 99.2 3.9E-11 1.3E-15 80.0 7.5 101 1-106 9-136 (194)
43 3nwj_A ATSK2; P loop, shikimat 99.2 9.1E-11 3.1E-15 81.8 9.2 106 1-114 56-169 (250)
44 2iyv_A Shikimate kinase, SK; t 99.2 6.5E-11 2.2E-15 78.6 8.1 32 1-32 10-41 (184)
45 2wwf_A Thymidilate kinase, put 99.2 6.3E-12 2.1E-16 85.2 2.4 54 1-56 18-71 (212)
46 3iij_A Coilin-interacting nucl 99.2 5.1E-11 1.8E-15 78.9 6.0 97 1-108 19-118 (180)
47 3v9p_A DTMP kinase, thymidylat 99.2 4.9E-11 1.7E-15 82.0 6.0 123 1-152 33-169 (227)
48 1cke_A CK, MSSA, protein (cyti 99.1 2.2E-10 7.4E-15 78.4 8.8 32 1-32 13-44 (227)
49 1e6c_A Shikimate kinase; phosp 99.1 2.8E-10 9.6E-15 74.6 9.0 31 1-31 10-40 (173)
50 1kht_A Adenylate kinase; phosp 99.1 4.9E-11 1.7E-15 79.4 5.3 101 1-106 11-135 (192)
51 1knq_A Gluconate kinase; ALFA/ 99.1 7.8E-10 2.7E-14 72.8 11.0 28 1-28 16-43 (175)
52 3ake_A Cytidylate kinase; CMP 99.1 1E-09 3.5E-14 73.9 11.3 32 1-32 10-41 (208)
53 3kb2_A SPBC2 prophage-derived 99.1 3.5E-10 1.2E-14 74.0 8.7 30 1-30 9-38 (173)
54 1via_A Shikimate kinase; struc 99.1 8.1E-11 2.8E-15 77.6 5.5 31 1-31 12-42 (175)
55 1uf9_A TT1252 protein; P-loop, 99.1 4.2E-10 1.4E-14 75.6 8.8 31 1-32 16-46 (203)
56 4hlc_A DTMP kinase, thymidylat 99.1 1E-09 3.6E-14 74.3 10.1 117 1-152 10-142 (205)
57 4edh_A DTMP kinase, thymidylat 99.1 2.5E-10 8.4E-15 77.8 6.3 119 1-152 14-149 (213)
58 2v54_A DTMP kinase, thymidylat 99.1 4.4E-10 1.5E-14 75.6 7.1 48 1-53 12-60 (204)
59 3a4m_A L-seryl-tRNA(SEC) kinas 99.0 1.6E-09 5.5E-14 75.9 9.7 92 1-108 12-121 (260)
60 2plr_A DTMP kinase, probable t 99.0 4.9E-10 1.7E-14 75.7 6.6 20 1-20 12-31 (213)
61 2p5t_B PEZT; postsegregational 99.0 3.1E-10 1.1E-14 79.2 5.8 100 1-108 40-158 (253)
62 1uj2_A Uridine-cytidine kinase 99.0 1.7E-10 5.8E-15 80.5 3.7 30 1-30 30-69 (252)
63 2h92_A Cytidylate kinase; ross 99.0 9.1E-10 3.1E-14 75.0 6.9 31 1-31 11-41 (219)
64 1kag_A SKI, shikimate kinase I 99.0 6.2E-10 2.1E-14 73.0 5.6 32 1-32 12-43 (173)
65 3lv8_A DTMP kinase, thymidylat 99.0 1E-10 3.4E-15 80.9 1.6 121 1-152 35-172 (236)
66 1nn5_A Similar to deoxythymidy 99.0 2.7E-10 9.3E-15 77.2 3.5 53 1-55 17-69 (215)
67 1gvn_B Zeta; postsegregational 99.0 1.3E-09 4.3E-14 77.5 6.6 101 1-108 41-163 (287)
68 1q3t_A Cytidylate kinase; nucl 98.9 2.3E-08 7.7E-13 68.9 12.5 32 1-32 24-55 (236)
69 3ch4_B Pmkase, phosphomevalona 98.9 8.6E-09 2.9E-13 69.3 9.5 129 1-150 19-180 (202)
70 3zvl_A Bifunctional polynucleo 98.9 5.6E-10 1.9E-14 83.2 4.1 81 1-109 266-359 (416)
71 1qhx_A CPT, protein (chloramph 98.9 7.4E-09 2.5E-13 68.1 9.0 30 1-30 11-42 (178)
72 4tmk_A Protein (thymidylate ki 98.9 2.8E-09 9.5E-14 72.6 6.2 124 1-152 11-150 (213)
73 2vli_A Antibiotic resistance p 98.9 1.8E-09 6.1E-14 71.4 4.4 22 1-22 13-34 (183)
74 3ld9_A DTMP kinase, thymidylat 98.9 5.8E-10 2E-14 76.4 2.1 19 1-19 29-47 (223)
75 4e22_A Cytidylate kinase; P-lo 98.8 1.4E-08 4.7E-13 70.8 8.4 32 1-32 35-66 (252)
76 3fdi_A Uncharacterized protein 98.8 5.2E-09 1.8E-13 70.6 5.8 30 1-31 14-43 (201)
77 3hjn_A DTMP kinase, thymidylat 98.8 7.6E-09 2.6E-13 69.6 6.5 121 1-152 8-139 (197)
78 3tmk_A Thymidylate kinase; pho 98.8 3E-08 1E-12 67.6 9.4 122 1-152 13-144 (216)
79 3sr0_A Adenylate kinase; phosp 98.8 6E-09 2.1E-13 70.6 5.8 59 94-152 58-121 (206)
80 1dek_A Deoxynucleoside monopho 98.8 1.9E-08 6.4E-13 69.7 6.9 33 1-33 9-41 (241)
81 2qt1_A Nicotinamide riboside k 98.8 5.1E-09 1.8E-13 70.7 3.9 30 1-30 29-59 (207)
82 1m7g_A Adenylylsulfate kinase; 98.7 2E-08 6.9E-13 68.0 5.3 27 1-27 33-65 (211)
83 3hdt_A Putative kinase; struct 98.7 6.4E-08 2.2E-12 66.3 6.9 33 1-34 22-54 (223)
84 2jaq_A Deoxyguanosine kinase; 98.6 1.1E-07 3.7E-12 63.7 7.5 23 1-23 8-30 (205)
85 2yvu_A Probable adenylyl-sulfa 98.6 1.5E-07 5.1E-12 62.4 7.1 27 1-27 21-52 (186)
86 2ze6_A Isopentenyl transferase 98.6 3.1E-08 1.1E-12 69.1 3.8 28 1-28 9-36 (253)
87 2qor_A Guanylate kinase; phosp 98.6 3E-07 1E-11 61.8 7.9 38 71-108 102-148 (204)
88 2axn_A 6-phosphofructo-2-kinas 98.5 6.4E-07 2.2E-11 68.5 10.2 105 1-111 43-172 (520)
89 3r20_A Cytidylate kinase; stru 98.5 1.4E-07 4.9E-12 64.9 4.5 32 1-32 17-48 (233)
90 2pez_A Bifunctional 3'-phospho 98.5 3.1E-07 1.1E-11 60.5 5.8 25 1-25 13-40 (179)
91 3tr0_A Guanylate kinase, GMP k 98.4 2.2E-07 7.5E-12 62.3 3.3 68 72-149 97-176 (205)
92 1x6v_B Bifunctional 3'-phospho 98.3 8.9E-07 3.1E-11 68.9 6.8 30 1-30 60-93 (630)
93 3uie_A Adenylyl-sulfate kinase 98.3 1.8E-06 6.2E-11 57.8 7.5 28 1-28 33-65 (200)
94 1rz3_A Hypothetical protein rb 98.3 6.4E-08 2.2E-12 65.1 0.1 37 72-108 125-165 (201)
95 2gks_A Bifunctional SAT/APS ki 98.3 4.3E-06 1.5E-10 64.3 8.7 31 1-32 380-415 (546)
96 1p5z_B DCK, deoxycytidine kina 98.2 8.9E-07 3E-11 61.9 3.7 23 1-23 32-55 (263)
97 1sq5_A Pantothenate kinase; P- 98.2 2E-06 6.8E-11 61.6 5.0 27 1-27 88-121 (308)
98 3a00_A Guanylate kinase, GMP k 98.0 7.1E-07 2.4E-11 59.2 0.3 17 1-17 9-25 (186)
99 1ex7_A Guanylate kinase; subst 97.9 1.4E-06 4.7E-11 58.0 0.3 40 72-111 92-139 (186)
100 3umf_A Adenylate kinase; rossm 97.9 5.9E-05 2E-09 51.3 8.2 49 58-110 98-156 (217)
101 3crm_A TRNA delta(2)-isopenten 97.9 2.8E-06 9.4E-11 61.2 1.3 28 1-28 13-40 (323)
102 1a7j_A Phosphoribulokinase; tr 97.9 1E-06 3.6E-11 62.6 -1.1 29 1-29 13-46 (290)
103 1zp6_A Hypothetical protein AT 97.8 7.2E-06 2.5E-10 54.2 2.5 29 1-29 17-47 (191)
104 3d3q_A TRNA delta(2)-isopenten 97.8 4.8E-06 1.6E-10 60.3 1.1 27 1-27 15-41 (340)
105 3gmt_A Adenylate kinase; ssgci 97.8 2.5E-05 8.5E-10 53.6 4.1 37 73-109 87-133 (230)
106 1bif_A 6-phosphofructo-2-kinas 97.7 3.1E-05 1.1E-09 58.5 4.6 31 1-31 47-82 (469)
107 2bdt_A BH3686; alpha-beta prot 97.7 2.3E-05 8E-10 51.8 3.3 29 1-29 10-39 (189)
108 1m8p_A Sulfate adenylyltransfe 97.7 0.00011 3.8E-09 56.8 7.3 30 1-31 404-439 (573)
109 3t15_A Ribulose bisphosphate c 97.7 1.7E-05 5.9E-10 56.3 2.5 28 1-28 44-73 (293)
110 3tlx_A Adenylate kinase 2; str 97.7 8.7E-05 3E-09 51.2 5.8 43 110-152 106-153 (243)
111 4b4t_K 26S protease regulatory 97.6 2.1E-05 7.2E-10 58.7 2.6 23 1-23 214-236 (428)
112 3a8t_A Adenylate isopentenyltr 97.6 1.2E-05 4.2E-10 58.1 1.2 27 1-27 48-74 (339)
113 3asz_A Uridine kinase; cytidin 97.6 2.4E-05 8.3E-10 52.5 2.6 29 1-29 14-44 (211)
114 4b4t_J 26S protease regulatory 97.6 2.3E-05 7.8E-10 58.0 2.6 24 1-24 190-213 (405)
115 4b4t_M 26S protease regulatory 97.6 2.3E-05 8E-10 58.5 2.6 23 1-23 223-245 (434)
116 4b4t_L 26S protease subunit RP 97.6 2.5E-05 8.6E-10 58.4 2.6 23 1-23 223-245 (437)
117 3be4_A Adenylate kinase; malar 97.5 0.00017 5.9E-09 48.7 5.9 54 98-152 71-129 (217)
118 3exa_A TRNA delta(2)-isopenten 97.5 2.2E-05 7.5E-10 56.2 1.4 27 1-27 11-37 (322)
119 1p6x_A Thymidine kinase; P-loo 97.5 0.00031 1.1E-08 50.8 7.1 19 134-152 156-175 (334)
120 3foz_A TRNA delta(2)-isopenten 97.5 3.4E-05 1.2E-09 55.1 2.1 27 1-27 18-44 (316)
121 4b4t_H 26S protease regulatory 97.5 4.3E-05 1.5E-09 57.4 2.6 23 1-23 251-273 (467)
122 1lv7_A FTSH; alpha/beta domain 97.5 4.8E-05 1.6E-09 52.7 2.7 23 1-23 53-75 (257)
123 3ec2_A DNA replication protein 97.5 0.00013 4.4E-09 47.8 4.6 31 1-31 46-82 (180)
124 4b4t_I 26S protease regulatory 97.5 4.5E-05 1.5E-09 56.8 2.6 24 1-24 224-247 (437)
125 2ga8_A Hypothetical 39.9 kDa p 97.5 1.7E-05 5.7E-10 57.8 -0.0 21 1-21 32-52 (359)
126 2qz4_A Paraplegin; AAA+, SPG7, 97.4 6.1E-05 2.1E-09 52.1 2.7 23 1-23 47-69 (262)
127 3hws_A ATP-dependent CLP prote 97.4 6.4E-05 2.2E-09 54.8 2.5 23 1-23 59-81 (363)
128 1g41_A Heat shock protein HSLU 97.4 6.4E-05 2.2E-09 56.3 2.5 25 1-25 58-82 (444)
129 2r62_A Cell division protease 97.4 7.1E-05 2.4E-09 52.1 2.5 23 1-23 52-74 (268)
130 2x8a_A Nuclear valosin-contain 97.4 7.2E-05 2.5E-09 52.6 2.4 23 1-23 52-74 (274)
131 3cf0_A Transitional endoplasmi 97.4 7.4E-05 2.5E-09 53.2 2.4 32 1-32 57-90 (301)
132 3b9p_A CG5977-PA, isoform A; A 97.4 7.4E-05 2.5E-09 52.8 2.3 22 1-22 62-83 (297)
133 2c95_A Adenylate kinase 1; tra 97.4 0.00041 1.4E-08 45.7 5.8 44 109-152 86-130 (196)
134 1aky_A Adenylate kinase; ATP:A 97.4 0.00028 9.6E-09 47.7 5.0 54 99-152 71-129 (220)
135 3c8u_A Fructokinase; YP_612366 97.3 6.2E-05 2.1E-09 50.6 1.6 27 1-27 30-61 (208)
136 3h4m_A Proteasome-activating n 97.3 9.7E-05 3.3E-09 51.8 2.6 23 1-23 59-81 (285)
137 3eph_A TRNA isopentenyltransfe 97.3 8.4E-05 2.9E-09 55.0 2.3 26 1-26 10-35 (409)
138 1d2n_A N-ethylmaleimide-sensit 97.3 0.00013 4.3E-09 51.0 2.8 23 1-23 72-94 (272)
139 3eie_A Vacuolar protein sortin 97.3 0.00011 3.6E-09 52.8 2.5 28 1-28 59-88 (322)
140 2jeo_A Uridine-cytidine kinase 97.3 0.00012 4.2E-09 50.4 2.6 20 1-20 33-52 (245)
141 1gtv_A TMK, thymidylate kinase 97.3 3.1E-05 1E-09 52.0 -0.6 19 1-19 8-26 (214)
142 1g8f_A Sulfate adenylyltransfe 97.3 0.00012 4E-09 55.9 2.5 26 1-26 403-435 (511)
143 1um8_A ATP-dependent CLP prote 97.2 0.00013 4.6E-09 53.3 2.5 23 1-23 80-102 (376)
144 2j41_A Guanylate kinase; GMP, 97.2 0.00011 3.6E-09 49.0 1.8 17 1-17 14-30 (207)
145 2qp9_X Vacuolar protein sortin 97.2 0.00015 5.1E-09 52.8 2.5 28 1-28 92-121 (355)
146 1ixz_A ATP-dependent metallopr 97.2 0.00016 5.3E-09 50.0 2.5 23 1-23 57-79 (254)
147 1ofh_A ATP-dependent HSL prote 97.2 0.00017 5.7E-09 51.0 2.7 22 1-22 58-79 (310)
148 2xb4_A Adenylate kinase; ATP-b 97.2 0.00067 2.3E-08 46.0 5.5 51 100-152 68-123 (223)
149 1ak2_A Adenylate kinase isoenz 97.2 0.00061 2.1E-08 46.5 5.3 53 99-152 83-140 (233)
150 3dl0_A Adenylate kinase; phosp 97.2 0.00062 2.1E-08 45.7 5.2 53 99-152 67-124 (216)
151 2c9o_A RUVB-like 1; hexameric 97.2 0.00019 6.4E-09 54.0 2.7 23 1-23 71-95 (456)
152 2bwj_A Adenylate kinase 5; pho 97.2 0.00089 3E-08 44.2 5.8 43 110-152 90-133 (199)
153 1in4_A RUVB, holliday junction 97.2 0.00024 8.2E-09 51.3 3.1 21 1-21 59-79 (334)
154 3tau_A Guanylate kinase, GMP k 97.1 0.00017 5.7E-09 48.5 2.0 18 1-18 16-33 (208)
155 1xwi_A SKD1 protein; VPS4B, AA 97.1 0.00018 6.1E-09 51.7 2.3 22 1-22 53-75 (322)
156 3tqc_A Pantothenate kinase; bi 97.1 0.0002 6.8E-09 51.5 2.5 28 1-28 100-134 (321)
157 2w58_A DNAI, primosome compone 97.1 0.0005 1.7E-08 45.7 4.3 31 1-31 62-97 (202)
158 1kgd_A CASK, peripheral plasma 97.1 0.00021 7.1E-09 46.9 2.2 18 1-18 13-30 (180)
159 2ce7_A Cell division protein F 97.1 0.00026 8.9E-09 53.6 2.7 23 1-23 57-79 (476)
160 1iy2_A ATP-dependent metallopr 97.1 0.00027 9.1E-09 49.6 2.5 23 1-23 81-103 (278)
161 3d8b_A Fidgetin-like protein 1 97.1 0.00025 8.5E-09 51.7 2.4 22 1-22 125-146 (357)
162 1l8q_A Chromosomal replication 97.0 0.00061 2.1E-08 48.7 4.2 31 1-31 45-80 (324)
163 1jbk_A CLPB protein; beta barr 97.0 0.00036 1.2E-08 45.4 2.6 17 1-17 51-67 (195)
164 3syl_A Protein CBBX; photosynt 97.0 0.00031 1.1E-08 49.8 2.4 17 1-17 75-91 (309)
165 1osn_A Thymidine kinase, VZV-T 97.0 0.0045 1.5E-07 44.9 8.5 18 135-152 166-184 (341)
166 3cf2_A TER ATPase, transitiona 97.0 0.0002 7E-09 57.4 1.6 28 1-28 246-275 (806)
167 1ye8_A Protein THEP1, hypothet 97.0 0.00037 1.3E-08 45.8 2.6 20 1-20 8-27 (178)
168 2p65_A Hypothetical protein PF 97.0 0.00026 8.9E-09 46.0 1.7 17 1-17 51-67 (187)
169 2ocp_A DGK, deoxyguanosine kin 97.0 0.00041 1.4E-08 47.6 2.8 20 1-20 10-30 (241)
170 2qmh_A HPR kinase/phosphorylas 97.0 0.00026 8.8E-09 47.5 1.6 25 1-26 42-66 (205)
171 3pfi_A Holliday junction ATP-d 96.9 0.00037 1.3E-08 50.0 2.5 23 1-23 63-85 (338)
172 1tue_A Replication protein E1; 96.9 0.00035 1.2E-08 47.1 2.1 23 1-23 66-88 (212)
173 3vfd_A Spastin; ATPase, microt 96.9 0.00038 1.3E-08 51.2 2.4 23 1-23 156-178 (389)
174 3fb4_A Adenylate kinase; psych 96.9 0.00091 3.1E-08 44.9 4.1 53 99-152 67-124 (216)
175 1sxj_A Activator 1 95 kDa subu 96.9 0.0004 1.4E-08 53.0 2.5 23 1-23 85-107 (516)
176 4gp7_A Metallophosphoesterase; 96.8 0.00044 1.5E-08 45.0 1.9 29 1-32 17-45 (171)
177 2zan_A Vacuolar protein sortin 96.8 0.00049 1.7E-08 51.6 2.3 31 1-31 175-208 (444)
178 3pvs_A Replication-associated 96.8 0.00052 1.8E-08 51.6 2.4 24 1-24 58-81 (447)
179 2kjq_A DNAA-related protein; s 96.8 0.00033 1.1E-08 44.7 1.1 17 1-17 44-60 (149)
180 1svm_A Large T antigen; AAA+ f 96.8 0.00078 2.7E-08 49.5 3.1 23 1-23 177-199 (377)
181 2dhr_A FTSH; AAA+ protein, hex 96.8 0.00056 1.9E-08 52.1 2.4 23 1-23 72-94 (499)
182 3n70_A Transport activator; si 96.8 0.00062 2.1E-08 43.0 2.2 17 1-17 32-48 (145)
183 3u61_B DNA polymerase accessor 96.8 0.00053 1.8E-08 49.0 2.0 23 1-23 56-78 (324)
184 1lvg_A Guanylate kinase, GMP k 96.7 0.00076 2.6E-08 44.9 2.6 17 1-17 12-28 (198)
185 1odf_A YGR205W, hypothetical 3 96.7 0.00073 2.5E-08 47.9 2.6 29 1-29 39-75 (290)
186 3bos_A Putative DNA replicatio 96.7 0.00073 2.5E-08 45.7 2.5 28 1-28 60-92 (242)
187 1hqc_A RUVB; extended AAA-ATPa 96.7 0.00087 3E-08 47.7 2.9 22 1-22 46-67 (324)
188 2r44_A Uncharacterized protein 96.7 0.00051 1.7E-08 49.3 1.5 22 1-22 54-75 (331)
189 3cr8_A Sulfate adenylyltranfer 96.7 0.00047 1.6E-08 53.1 1.4 29 1-29 377-411 (552)
190 3cf2_A TER ATPase, transitiona 96.7 0.00066 2.2E-08 54.5 2.2 30 1-30 519-550 (806)
191 3ney_A 55 kDa erythrocyte memb 96.6 0.0009 3.1E-08 44.8 2.4 18 1-18 27-44 (197)
192 1zd8_A GTP:AMP phosphotransfer 96.6 0.0038 1.3E-07 42.3 5.4 50 100-152 75-125 (227)
193 3hu3_A Transitional endoplasmi 96.6 0.00082 2.8E-08 51.1 2.2 28 1-28 246-275 (489)
194 3m6a_A ATP-dependent protease 96.6 0.0011 3.9E-08 50.9 2.7 22 1-22 116-137 (543)
195 1ypw_A Transitional endoplasmi 96.5 0.001 3.6E-08 53.5 2.5 23 1-23 519-541 (806)
196 2qgz_A Helicase loader, putati 96.5 0.0016 5.5E-08 46.5 3.3 32 1-32 160-197 (308)
197 1c9k_A COBU, adenosylcobinamid 96.5 0.00073 2.5E-08 44.5 1.4 23 1-24 7-31 (180)
198 3uk6_A RUVB-like 2; hexameric 96.5 0.0012 4.1E-08 47.8 2.7 19 1-19 78-96 (368)
199 2z4s_A Chromosomal replication 96.5 0.0024 8.2E-08 47.8 4.2 31 1-31 138-175 (440)
200 3pxg_A Negative regulator of g 96.5 0.0014 4.6E-08 49.6 2.9 17 1-17 209-225 (468)
201 2v1u_A Cell division control p 96.5 0.0011 3.8E-08 48.1 2.3 17 1-17 52-68 (387)
202 3aez_A Pantothenate kinase; tr 96.5 0.0013 4.4E-08 47.1 2.5 17 1-17 98-114 (312)
203 2cdn_A Adenylate kinase; phosp 96.5 0.0029 1E-07 41.9 4.0 42 111-152 98-144 (201)
204 2chg_A Replication factor C sm 96.5 0.0015 5.1E-08 43.4 2.5 17 1-17 46-62 (226)
205 1z6g_A Guanylate kinase; struc 96.4 0.0013 4.5E-08 44.5 2.2 17 1-17 31-47 (218)
206 1ypw_A Transitional endoplasmi 96.4 0.0012 4E-08 53.2 2.1 23 1-23 246-268 (806)
207 1njg_A DNA polymerase III subu 96.4 0.0016 5.3E-08 43.9 2.5 19 1-19 53-71 (250)
208 2qby_B CDC6 homolog 3, cell di 96.4 0.0016 5.4E-08 47.4 2.6 17 1-17 53-69 (384)
209 4fcw_A Chaperone protein CLPB; 96.4 0.0016 5.4E-08 46.1 2.5 17 1-17 55-71 (311)
210 1xjc_A MOBB protein homolog; s 96.4 0.0019 6.4E-08 42.1 2.6 17 1-17 12-28 (169)
211 1znw_A Guanylate kinase, GMP k 96.4 0.0015 5.2E-08 43.7 2.2 17 1-17 28-44 (207)
212 3co5_A Putative two-component 96.4 0.00034 1.2E-08 44.2 -1.0 26 1-26 35-61 (143)
213 1qf9_A UMP/CMP kinase, protein 96.4 0.0041 1.4E-07 40.6 4.3 43 110-152 82-128 (194)
214 3lnc_A Guanylate kinase, GMP k 96.4 0.00084 2.9E-08 45.7 0.8 17 1-17 35-52 (231)
215 4a74_A DNA repair and recombin 96.4 0.0015 5E-08 44.1 2.1 17 1-17 33-49 (231)
216 2qby_A CDC6 homolog 1, cell di 96.3 0.0019 6.5E-08 46.8 2.6 17 1-17 53-69 (386)
217 2ehv_A Hypothetical protein PH 96.3 0.0017 5.9E-08 44.3 2.1 14 1-14 38-51 (251)
218 1sxj_C Activator 1 40 kDa subu 96.3 0.002 6.8E-08 46.4 2.5 17 1-17 54-70 (340)
219 1s96_A Guanylate kinase, GMP k 96.3 0.0019 6.5E-08 43.8 2.2 18 1-18 24-41 (219)
220 2w0m_A SSO2452; RECA, SSPF, un 96.2 0.0024 8.1E-08 43.0 2.5 17 1-17 31-47 (235)
221 2bjv_A PSP operon transcriptio 96.2 0.0015 5.1E-08 45.3 1.5 18 1-18 37-54 (265)
222 3pxi_A Negative regulator of g 96.2 0.0024 8.3E-08 50.9 2.9 25 1-25 209-243 (758)
223 2i3b_A HCR-ntpase, human cance 96.2 0.0028 9.5E-08 42.0 2.5 17 1-17 9-25 (189)
224 1fnn_A CDC6P, cell division co 96.1 0.0027 9.2E-08 46.2 2.6 17 1-17 52-68 (389)
225 2cvh_A DNA repair and recombin 96.1 0.0023 7.9E-08 42.8 2.1 24 1-24 28-53 (220)
226 1sxj_D Activator 1 41 kDa subu 96.1 0.0027 9.2E-08 45.6 2.5 18 1-18 66-83 (353)
227 3te6_A Regulatory protein SIR3 96.1 0.0016 5.4E-08 46.8 1.2 17 1-17 53-69 (318)
228 1np6_A Molybdopterin-guanine d 96.0 0.0036 1.2E-07 40.9 2.5 17 1-17 14-30 (174)
229 1r6b_X CLPA protein; AAA+, N-t 96.0 0.0032 1.1E-07 50.2 2.6 27 1-27 496-524 (758)
230 1g8p_A Magnesium-chelatase 38 96.0 0.0018 6.2E-08 46.5 1.0 18 1-18 53-70 (350)
231 2f1r_A Molybdopterin-guanine d 96.0 0.0016 5.3E-08 42.6 0.5 17 1-17 10-26 (171)
232 2v9p_A Replication protein E1; 96.0 0.0036 1.2E-07 44.7 2.5 18 1-18 134-151 (305)
233 1n0w_A DNA repair protein RAD5 95.9 0.0032 1.1E-07 42.8 2.1 16 1-16 32-47 (243)
234 3tqf_A HPR(Ser) kinase; transf 95.9 0.0048 1.6E-07 40.4 2.7 22 1-23 24-45 (181)
235 1htw_A HI0065; nucleotide-bind 95.9 0.004 1.4E-07 40.0 2.3 17 1-17 41-57 (158)
236 1jr3_A DNA polymerase III subu 95.9 0.0044 1.5E-07 44.8 2.8 19 1-19 46-64 (373)
237 1sxj_E Activator 1 40 kDa subu 95.9 0.0032 1.1E-07 45.4 2.0 17 1-17 44-60 (354)
238 1lw7_A Transcriptional regulat 95.9 0.0032 1.1E-07 45.9 1.9 20 1-20 178-197 (365)
239 2eyu_A Twitching motility prot 95.9 0.0044 1.5E-07 43.2 2.6 17 1-17 33-49 (261)
240 3czq_A Putative polyphosphate 95.9 0.0077 2.6E-07 42.9 3.8 17 2-18 95-111 (304)
241 2dr3_A UPF0273 protein PH0284; 95.8 0.0046 1.6E-07 42.0 2.6 17 1-17 31-47 (247)
242 1iqp_A RFCS; clamp loader, ext 95.8 0.0046 1.6E-07 43.8 2.6 17 1-17 54-70 (327)
243 2qen_A Walker-type ATPase; unk 95.8 0.0052 1.8E-07 43.9 2.8 26 1-26 39-64 (350)
244 1cr0_A DNA primase/helicase; R 95.8 0.0046 1.6E-07 43.6 2.5 17 1-17 43-59 (296)
245 1vma_A Cell division protein F 95.8 0.005 1.7E-07 44.0 2.6 17 1-17 112-128 (306)
246 1tev_A UMP-CMP kinase; ploop, 95.8 0.0064 2.2E-07 39.7 2.9 43 110-152 85-131 (196)
247 3lw7_A Adenylate kinase relate 95.7 0.021 7.1E-07 36.4 5.2 43 109-152 76-119 (179)
248 1rj9_A FTSY, signal recognitio 95.7 0.0054 1.9E-07 43.7 2.5 17 1-17 110-126 (304)
249 2onk_A Molybdate/tungstate ABC 95.7 0.0048 1.6E-07 42.5 2.1 17 1-17 32-48 (240)
250 3tif_A Uncharacterized ABC tra 95.7 0.0038 1.3E-07 42.8 1.5 17 1-17 39-55 (235)
251 1qvr_A CLPB protein; coiled co 95.7 0.0054 1.8E-07 49.7 2.6 17 1-17 199-215 (854)
252 2pcj_A ABC transporter, lipopr 95.7 0.0039 1.3E-07 42.4 1.6 17 1-17 38-54 (224)
253 3b85_A Phosphate starvation-in 95.6 0.0043 1.5E-07 41.7 1.7 16 1-16 30-45 (208)
254 2orw_A Thymidine kinase; TMTK, 95.6 0.0066 2.2E-07 40.0 2.5 17 1-17 11-27 (184)
255 2chq_A Replication factor C sm 95.6 0.006 2.1E-07 43.0 2.5 17 1-17 46-62 (319)
256 3b9q_A Chloroplast SRP recepto 95.6 0.0065 2.2E-07 43.3 2.5 17 1-17 108-124 (302)
257 1u0j_A DNA replication protein 95.6 0.0064 2.2E-07 42.5 2.4 18 1-18 112-129 (267)
258 3e70_C DPA, signal recognition 95.5 0.0068 2.3E-07 43.7 2.6 17 1-17 137-153 (328)
259 1nlf_A Regulatory protein REPA 95.5 0.007 2.4E-07 42.3 2.5 17 1-17 38-54 (279)
260 2px0_A Flagellar biosynthesis 95.5 0.0073 2.5E-07 42.9 2.5 17 1-17 113-129 (296)
261 1sxj_B Activator 1 37 kDa subu 95.4 0.0075 2.6E-07 42.6 2.5 17 1-17 50-66 (323)
262 3gfo_A Cobalt import ATP-bindi 95.4 0.0051 1.8E-07 43.2 1.6 17 1-17 42-58 (275)
263 2vp4_A Deoxynucleoside kinase; 95.4 0.003 1E-07 43.0 0.3 16 1-16 28-43 (230)
264 4g1u_C Hemin import ATP-bindin 95.4 0.0052 1.8E-07 43.0 1.6 17 1-17 45-61 (266)
265 2cbz_A Multidrug resistance-as 95.4 0.0054 1.8E-07 42.1 1.5 17 1-17 39-55 (237)
266 2d2e_A SUFC protein; ABC-ATPas 95.4 0.0069 2.4E-07 41.9 2.1 16 1-16 37-52 (250)
267 2vhj_A Ntpase P4, P4; non- hyd 95.4 0.0081 2.8E-07 43.2 2.4 24 1-24 131-156 (331)
268 1pzn_A RAD51, DNA repair and r 95.3 0.0069 2.4E-07 44.0 2.1 17 1-17 139-155 (349)
269 3hr8_A Protein RECA; alpha and 95.3 0.0086 2.9E-07 43.7 2.5 17 1-17 69-85 (356)
270 3nbx_X ATPase RAVA; AAA+ ATPas 95.3 0.0042 1.4E-07 47.3 0.9 18 1-18 49-66 (500)
271 1sgw_A Putative ABC transporte 95.3 0.0061 2.1E-07 41.2 1.6 17 1-17 43-59 (214)
272 1b0u_A Histidine permease; ABC 95.3 0.006 2.1E-07 42.5 1.6 17 1-17 40-56 (262)
273 1a5t_A Delta prime, HOLB; zinc 95.3 0.01 3.5E-07 42.7 2.8 20 1-20 32-51 (334)
274 1mv5_A LMRA, multidrug resista 95.3 0.0063 2.2E-07 41.9 1.6 17 1-17 36-52 (243)
275 3cm0_A Adenylate kinase; ATP-b 95.3 0.014 4.7E-07 38.0 3.2 40 113-152 79-123 (186)
276 1g6h_A High-affinity branched- 95.3 0.0063 2.1E-07 42.3 1.5 17 1-17 41-57 (257)
277 1ji0_A ABC transporter; ATP bi 95.2 0.0064 2.2E-07 41.8 1.5 17 1-17 40-56 (240)
278 2ff7_A Alpha-hemolysin translo 95.2 0.0064 2.2E-07 42.0 1.5 17 1-17 43-59 (247)
279 2zu0_C Probable ATP-dependent 95.2 0.0085 2.9E-07 41.8 2.1 16 1-16 54-69 (267)
280 2olj_A Amino acid ABC transpor 95.2 0.0068 2.3E-07 42.3 1.6 17 1-17 58-74 (263)
281 1vpl_A ABC transporter, ATP-bi 95.1 0.0072 2.5E-07 42.0 1.6 17 1-17 49-65 (256)
282 3k1j_A LON protease, ATP-depen 95.1 0.0083 2.9E-07 46.7 2.1 18 1-18 68-85 (604)
283 3fvq_A Fe(3+) IONS import ATP- 95.1 0.0088 3E-07 43.7 2.1 17 1-17 38-54 (359)
284 2og2_A Putative signal recogni 95.1 0.011 3.7E-07 43.2 2.5 17 1-17 165-181 (359)
285 2ewv_A Twitching motility prot 95.1 0.01 3.6E-07 43.4 2.5 17 1-17 144-160 (372)
286 3pxi_A Negative regulator of g 95.1 0.011 3.6E-07 47.3 2.7 28 1-28 529-561 (758)
287 2pze_A Cystic fibrosis transme 95.1 0.0075 2.6E-07 41.1 1.6 17 1-17 42-58 (229)
288 2ixe_A Antigen peptide transpo 95.1 0.0074 2.5E-07 42.3 1.5 17 1-17 53-69 (271)
289 2qi9_C Vitamin B12 import ATP- 95.1 0.0078 2.7E-07 41.6 1.6 17 1-17 34-50 (249)
290 2ghi_A Transport protein; mult 95.1 0.0077 2.6E-07 41.9 1.5 17 1-17 54-70 (260)
291 3kl4_A SRP54, signal recogniti 95.1 0.011 3.9E-07 44.1 2.5 17 1-17 105-121 (433)
292 3rlf_A Maltose/maltodextrin im 95.1 0.0097 3.3E-07 43.8 2.1 17 1-17 37-53 (381)
293 2zr9_A Protein RECA, recombina 95.0 0.012 4.2E-07 42.7 2.5 25 1-25 69-98 (349)
294 1z47_A CYSA, putative ABC-tran 95.0 0.01 3.5E-07 43.2 2.1 16 1-16 49-64 (355)
295 1w5s_A Origin recognition comp 95.0 0.012 4.2E-07 43.0 2.6 17 1-17 60-76 (412)
296 2ihy_A ABC transporter, ATP-bi 95.0 0.0085 2.9E-07 42.2 1.6 17 1-17 55-71 (279)
297 2yyz_A Sugar ABC transporter, 95.0 0.01 3.6E-07 43.3 2.1 17 1-17 37-53 (359)
298 2yz2_A Putative ABC transporte 95.0 0.0084 2.9E-07 41.8 1.5 17 1-17 41-57 (266)
299 1r6b_X CLPA protein; AAA+, N-t 94.9 0.013 4.5E-07 46.7 2.7 17 1-17 215-231 (758)
300 2nq2_C Hypothetical ABC transp 94.9 0.0088 3E-07 41.4 1.5 17 1-17 39-55 (253)
301 2it1_A 362AA long hypothetical 94.9 0.011 3.9E-07 43.1 2.1 17 1-17 37-53 (362)
302 3czp_A Putative polyphosphate 94.9 0.041 1.4E-06 41.9 5.2 18 2-19 52-69 (500)
303 2pjz_A Hypothetical protein ST 94.9 0.0093 3.2E-07 41.6 1.6 16 1-16 38-53 (263)
304 2r8r_A Sensor protein; KDPD, P 94.9 0.015 5.1E-07 39.7 2.5 17 1-17 14-30 (228)
305 1v43_A Sugar-binding transport 94.9 0.012 4E-07 43.2 2.1 17 1-17 45-61 (372)
306 1qvr_A CLPB protein; coiled co 94.9 0.011 3.9E-07 47.8 2.2 17 1-17 596-612 (854)
307 2qm8_A GTPase/ATPase; G protei 94.9 0.014 4.9E-07 42.1 2.5 17 1-17 63-79 (337)
308 3jvv_A Twitching mobility prot 94.8 0.014 4.8E-07 42.5 2.5 17 1-17 131-147 (356)
309 1g29_1 MALK, maltose transport 94.8 0.012 4E-07 43.2 2.1 16 1-16 37-52 (372)
310 3sop_A Neuronal-specific septi 94.8 0.015 5.1E-07 40.7 2.5 17 1-17 10-26 (270)
311 2gza_A Type IV secretion syste 94.8 0.0093 3.2E-07 43.5 1.4 18 1-18 183-200 (361)
312 2b8t_A Thymidine kinase; deoxy 94.8 0.016 5.5E-07 39.4 2.5 17 1-17 20-36 (223)
313 3lda_A DNA repair protein RAD5 94.8 0.012 4.2E-07 43.5 2.1 15 1-15 186-200 (400)
314 3tui_C Methionine import ATP-b 94.8 0.013 4.5E-07 42.8 2.1 17 1-17 62-78 (366)
315 1zu4_A FTSY; GTPase, signal re 94.7 0.016 5.6E-07 41.5 2.5 17 1-17 113-129 (320)
316 3upu_A ATP-dependent DNA helic 94.7 0.016 5.4E-07 43.6 2.5 17 1-17 53-69 (459)
317 2yhs_A FTSY, cell division pro 94.7 0.016 5.6E-07 44.0 2.6 17 1-17 301-317 (503)
318 1oix_A RAS-related protein RAB 94.7 0.016 5.5E-07 37.9 2.3 16 1-16 37-52 (191)
319 2r2a_A Uncharacterized protein 94.7 0.016 5.4E-07 38.7 2.2 16 1-16 13-28 (199)
320 3dm5_A SRP54, signal recogniti 94.6 0.018 6E-07 43.2 2.6 17 1-17 108-124 (443)
321 1yrb_A ATP(GTP)binding protein 94.6 0.018 6.3E-07 39.5 2.5 17 1-17 22-38 (262)
322 2zts_A Putative uncharacterize 94.6 0.018 6.1E-07 39.1 2.4 16 1-16 38-53 (251)
323 1e2k_A Thymidine kinase; trans 94.6 0.0092 3.2E-07 43.1 1.0 18 1-18 12-29 (331)
324 2fna_A Conserved hypothetical 94.6 0.023 8E-07 40.5 3.1 25 1-25 38-64 (357)
325 2npi_A Protein CLP1; CLP1-PCF1 94.6 0.015 5E-07 43.9 2.1 17 1-17 146-162 (460)
326 3gd7_A Fusion complex of cysti 94.6 0.015 5.1E-07 42.9 2.1 15 1-15 55-69 (390)
327 3d31_A Sulfate/molybdate ABC t 94.5 0.0093 3.2E-07 43.3 0.9 17 1-17 34-50 (348)
328 1ojl_A Transcriptional regulat 94.5 0.019 6.5E-07 40.8 2.4 17 1-17 33-49 (304)
329 2wsm_A Hydrogenase expression/ 94.5 0.023 7.8E-07 37.9 2.7 17 1-17 38-54 (221)
330 2f9l_A RAB11B, member RAS onco 94.4 0.02 6.9E-07 37.6 2.2 16 1-16 13-28 (199)
331 1p9r_A General secretion pathw 94.4 0.022 7.6E-07 42.4 2.6 18 1-18 175-192 (418)
332 1u94_A RECA protein, recombina 94.3 0.022 7.7E-07 41.5 2.5 24 1-24 71-99 (356)
333 3kta_A Chromosome segregation 94.3 0.025 8.5E-07 36.7 2.5 18 1-18 34-51 (182)
334 2pt7_A CAG-ALFA; ATPase, prote 94.3 0.011 3.9E-07 42.5 0.9 17 1-17 179-195 (330)
335 2z43_A DNA repair and recombin 94.3 0.022 7.4E-07 40.8 2.4 17 1-17 115-131 (324)
336 2v3c_C SRP54, signal recogniti 94.3 0.019 6.4E-07 43.0 2.1 17 1-17 107-123 (432)
337 1of1_A Thymidine kinase; trans 94.3 0.015 5E-07 42.7 1.5 18 1-18 57-74 (376)
338 1ls1_A Signal recognition part 94.3 0.024 8.4E-07 40.1 2.6 17 1-17 106-122 (295)
339 2bbs_A Cystic fibrosis transme 94.3 0.016 5.4E-07 41.0 1.5 17 1-17 72-88 (290)
340 1v5w_A DMC1, meiotic recombina 94.2 0.024 8.2E-07 41.0 2.5 16 1-16 130-145 (343)
341 1j8m_F SRP54, signal recogniti 94.2 0.021 7.2E-07 40.5 2.1 17 1-17 106-122 (297)
342 2yv5_A YJEQ protein; hydrolase 94.2 0.021 7.3E-07 40.5 2.1 16 1-17 173-188 (302)
343 2www_A Methylmalonic aciduria 94.1 0.026 9.1E-07 40.9 2.6 17 1-17 82-98 (349)
344 3f9v_A Minichromosome maintena 94.1 0.0071 2.4E-07 47.1 -0.5 22 1-22 335-356 (595)
345 3p32_A Probable GTPase RV1496/ 94.1 0.027 9.3E-07 40.9 2.6 17 1-17 87-103 (355)
346 3nh6_A ATP-binding cassette SU 94.1 0.01 3.5E-07 42.4 0.3 17 1-17 88-104 (306)
347 3e1s_A Exodeoxyribonuclease V, 94.0 0.027 9.1E-07 43.7 2.5 17 1-17 212-228 (574)
348 3io5_A Recombination and repai 94.0 0.028 9.7E-07 40.4 2.5 17 1-17 36-52 (333)
349 1oxx_K GLCV, glucose, ABC tran 94.0 0.01 3.4E-07 43.3 0.1 16 1-16 39-54 (353)
350 2i1q_A DNA repair and recombin 93.9 0.028 9.7E-07 40.1 2.4 16 1-16 106-121 (322)
351 1ukz_A Uridylate kinase; trans 93.9 0.11 3.9E-06 34.1 5.2 36 73-108 97-142 (203)
352 1ko7_A HPR kinase/phosphatase; 93.9 0.032 1.1E-06 39.9 2.6 22 1-23 152-173 (314)
353 1qhl_A Protein (cell division 93.9 0.015 5.1E-07 39.7 0.8 17 1-17 35-51 (227)
354 2rcn_A Probable GTPase ENGC; Y 93.9 0.026 8.9E-07 41.2 2.1 16 1-16 223-238 (358)
355 3bh0_A DNAB-like replicative h 93.9 0.033 1.1E-06 39.8 2.6 17 1-17 76-92 (315)
356 1xx6_A Thymidine kinase; NESG, 93.8 0.035 1.2E-06 36.8 2.5 17 1-17 16-32 (191)
357 2wji_A Ferrous iron transport 93.8 0.03 1E-06 35.6 2.1 15 1-15 11-25 (165)
358 2p67_A LAO/AO transport system 93.8 0.034 1.2E-06 40.1 2.5 17 1-17 64-80 (341)
359 1knx_A Probable HPR(Ser) kinas 93.7 0.031 1E-06 40.0 2.2 22 1-23 155-176 (312)
360 1e4v_A Adenylate kinase; trans 93.7 0.046 1.6E-06 36.5 2.9 31 78-108 84-124 (214)
361 1u0l_A Probable GTPase ENGC; p 93.6 0.022 7.6E-07 40.4 1.4 24 1-27 177-200 (301)
362 2r6a_A DNAB helicase, replicat 93.6 0.036 1.2E-06 41.6 2.5 17 1-17 211-227 (454)
363 3czp_A Putative polyphosphate 93.6 0.082 2.8E-06 40.3 4.4 22 3-24 310-334 (500)
364 2dyk_A GTP-binding protein; GT 93.6 0.039 1.3E-06 34.5 2.3 16 1-16 9-24 (161)
365 2hf9_A Probable hydrogenase ni 93.5 0.041 1.4E-06 36.8 2.5 17 1-17 46-62 (226)
366 2dpy_A FLII, flagellum-specifi 93.4 0.038 1.3E-06 41.4 2.4 18 1-18 165-182 (438)
367 1tf7_A KAIC; homohexamer, hexa 93.4 0.033 1.1E-06 42.6 2.1 13 1-13 47-59 (525)
368 2zej_A Dardarin, leucine-rich 93.4 0.03 1E-06 36.3 1.6 15 1-15 10-24 (184)
369 1z2a_A RAS-related protein RAB 93.4 0.042 1.4E-06 34.6 2.2 16 1-16 13-28 (168)
370 2obl_A ESCN; ATPase, hydrolase 93.3 0.041 1.4E-06 39.9 2.3 18 1-18 79-96 (347)
371 2ce2_X GTPase HRAS; signaling 93.3 0.044 1.5E-06 34.2 2.2 16 1-16 11-26 (166)
372 2j37_W Signal recognition part 93.3 0.044 1.5E-06 41.8 2.5 17 1-17 109-125 (504)
373 1xp8_A RECA protein, recombina 93.3 0.046 1.6E-06 40.0 2.5 26 1-26 82-112 (366)
374 2ffh_A Protein (FFH); SRP54, s 93.2 0.046 1.6E-06 40.8 2.6 17 1-17 106-122 (425)
375 1zak_A Adenylate kinase; ATP:A 93.2 0.063 2.2E-06 36.0 3.0 15 94-108 116-130 (222)
376 2oap_1 GSPE-2, type II secreti 93.2 0.032 1.1E-06 42.7 1.6 17 1-17 268-284 (511)
377 1tf7_A KAIC; homohexamer, hexa 93.2 0.047 1.6E-06 41.7 2.6 17 1-17 289-305 (525)
378 4b3f_X DNA-binding protein smu 93.2 0.046 1.6E-06 42.9 2.5 17 1-17 213-229 (646)
379 2wjg_A FEOB, ferrous iron tran 93.1 0.045 1.5E-06 35.3 2.1 15 1-15 15-29 (188)
380 1kao_A RAP2A; GTP-binding prot 93.0 0.052 1.8E-06 34.0 2.3 16 1-16 11-26 (167)
381 1yqt_A RNAse L inhibitor; ATP- 92.9 0.044 1.5E-06 42.1 2.1 17 1-17 55-71 (538)
382 2qag_B Septin-6, protein NEDD5 92.9 0.04 1.4E-06 41.1 1.8 16 1-16 50-65 (427)
383 2xxa_A Signal recognition part 92.9 0.054 1.9E-06 40.5 2.5 17 1-17 108-124 (433)
384 2gj8_A MNME, tRNA modification 92.9 0.05 1.7E-06 34.9 2.1 16 1-16 12-27 (172)
385 3euj_A Chromosome partition pr 92.9 0.047 1.6E-06 41.4 2.1 17 1-17 37-53 (483)
386 1tq4_A IIGP1, interferon-induc 92.8 0.048 1.6E-06 40.6 2.1 15 1-15 77-91 (413)
387 3b5x_A Lipid A export ATP-bind 92.8 0.044 1.5E-06 42.5 2.0 17 1-17 377-393 (582)
388 1u8z_A RAS-related protein RAL 92.8 0.058 2E-06 33.8 2.2 16 1-16 12-27 (168)
389 1pui_A ENGB, probable GTP-bind 92.7 0.024 8.3E-07 37.4 0.4 15 1-15 34-48 (210)
390 3b60_A Lipid A export ATP-bind 92.7 0.039 1.3E-06 42.7 1.6 17 1-17 377-393 (582)
391 2gk6_A Regulator of nonsense t 92.7 0.059 2E-06 42.1 2.5 17 1-17 203-219 (624)
392 1nij_A Hypothetical protein YJ 92.7 0.048 1.7E-06 38.9 1.9 16 1-16 12-27 (318)
393 1nrj_B SR-beta, signal recogni 92.7 0.059 2E-06 35.8 2.2 17 1-17 20-36 (218)
394 4ag6_A VIRB4 ATPase, type IV s 92.7 0.063 2.2E-06 39.3 2.6 17 1-17 43-59 (392)
395 2q6t_A DNAB replication FORK h 92.6 0.063 2.2E-06 40.1 2.5 17 1-17 208-224 (444)
396 2ged_A SR-beta, signal recogni 92.6 0.063 2.2E-06 34.8 2.3 16 1-16 56-71 (193)
397 1w36_D RECD, exodeoxyribonucle 92.6 0.062 2.1E-06 41.9 2.5 17 1-17 172-188 (608)
398 3t1o_A Gliding protein MGLA; G 92.6 0.054 1.8E-06 35.1 1.9 18 1-18 22-39 (198)
399 2nzj_A GTP-binding protein REM 92.5 0.062 2.1E-06 34.1 2.1 15 1-15 12-26 (175)
400 1ky3_A GTP-binding protein YPT 92.5 0.068 2.3E-06 34.1 2.3 16 1-16 16-31 (182)
401 3q72_A GTP-binding protein RAD 92.5 0.057 2E-06 33.9 1.9 14 1-14 10-23 (166)
402 1z0j_A RAB-22, RAS-related pro 92.5 0.069 2.4E-06 33.6 2.3 16 1-16 14-29 (170)
403 1f2t_A RAD50 ABC-ATPase; DNA d 92.4 0.065 2.2E-06 33.8 2.1 17 1-17 31-47 (149)
404 1wms_A RAB-9, RAB9, RAS-relate 92.4 0.069 2.4E-06 33.9 2.3 15 1-15 15-29 (177)
405 3q85_A GTP-binding protein REM 92.4 0.063 2.2E-06 33.9 2.1 15 1-15 10-24 (169)
406 1g16_A RAS-related protein SEC 92.4 0.069 2.4E-06 33.6 2.2 15 1-15 11-25 (170)
407 1z08_A RAS-related protein RAB 92.4 0.071 2.4E-06 33.6 2.3 16 1-16 14-29 (170)
408 1ek0_A Protein (GTP-binding pr 92.4 0.071 2.4E-06 33.5 2.2 16 1-16 11-26 (170)
409 1c1y_A RAS-related protein RAP 92.3 0.072 2.5E-06 33.4 2.2 15 1-15 11-25 (167)
410 4a1f_A DNAB helicase, replicat 92.3 0.076 2.6E-06 38.4 2.5 17 1-17 54-70 (338)
411 4dzz_A Plasmid partitioning pr 92.2 0.079 2.7E-06 34.8 2.4 24 2-25 11-39 (206)
412 3ozx_A RNAse L inhibitor; ATP 92.2 0.051 1.7E-06 41.8 1.6 17 1-17 33-49 (538)
413 2erx_A GTP-binding protein DI- 92.2 0.072 2.5E-06 33.5 2.1 15 1-15 11-25 (172)
414 1r2q_A RAS-related protein RAB 92.1 0.078 2.7E-06 33.3 2.2 15 1-15 14-28 (170)
415 1m2o_B GTP-binding protein SAR 92.1 0.077 2.6E-06 34.6 2.2 15 1-15 31-45 (190)
416 1m7b_A RND3/RHOE small GTP-bin 92.1 0.077 2.6E-06 34.2 2.2 16 1-16 15-30 (184)
417 3ozx_A RNAse L inhibitor; ATP 92.1 0.053 1.8E-06 41.7 1.6 17 1-17 302-318 (538)
418 3k53_A Ferrous iron transport 92.1 0.069 2.4E-06 37.1 2.1 16 1-16 11-26 (271)
419 2yl4_A ATP-binding cassette SU 92.0 0.043 1.5E-06 42.6 1.0 17 1-17 378-394 (595)
420 2fn4_A P23, RAS-related protei 92.0 0.083 2.9E-06 33.6 2.3 16 1-16 17-32 (181)
421 3j16_B RLI1P; ribosome recycli 92.0 0.068 2.3E-06 41.7 2.1 17 1-17 111-127 (608)
422 1byi_A Dethiobiotin synthase; 92.0 0.085 2.9E-06 35.2 2.4 16 2-17 11-26 (224)
423 3con_A GTPase NRAS; structural 92.0 0.081 2.8E-06 34.2 2.2 16 1-16 29-44 (190)
424 3qf4_B Uncharacterized ABC tra 91.9 0.047 1.6E-06 42.5 1.2 17 1-17 389-405 (598)
425 1yqt_A RNAse L inhibitor; ATP- 91.9 0.071 2.4E-06 41.0 2.1 17 1-17 320-336 (538)
426 2qnr_A Septin-2, protein NEDD5 91.9 0.06 2E-06 38.2 1.6 15 1-15 26-40 (301)
427 1zcb_A G alpha I/13; GTP-bindi 91.9 0.094 3.2E-06 38.3 2.6 17 1-17 41-57 (362)
428 1r8s_A ADP-ribosylation factor 91.8 0.096 3.3E-06 32.8 2.4 16 1-16 8-23 (164)
429 2hxs_A RAB-26, RAS-related pro 91.8 0.083 2.9E-06 33.6 2.1 15 1-15 14-28 (178)
430 1z0f_A RAB14, member RAS oncog 91.8 0.088 3E-06 33.4 2.2 16 1-16 23-38 (179)
431 3bgw_A DNAB-like replicative h 91.8 0.089 3E-06 39.5 2.5 17 1-17 205-221 (444)
432 4dsu_A GTPase KRAS, isoform 2B 91.8 0.09 3.1E-06 33.7 2.3 16 1-16 12-27 (189)
433 3bc1_A RAS-related protein RAB 91.8 0.089 3E-06 33.9 2.2 15 1-15 19-33 (195)
434 1upt_A ARL1, ADP-ribosylation 91.7 0.092 3.2E-06 33.1 2.2 15 1-15 15-29 (171)
435 2fz4_A DNA repair protein RAD2 91.7 0.12 3.9E-06 35.3 2.8 19 1-19 116-134 (237)
436 2y8e_A RAB-protein 6, GH09086P 91.7 0.093 3.2E-06 33.3 2.2 15 1-15 22-36 (179)
437 3szr_A Interferon-induced GTP- 91.7 0.076 2.6E-06 41.4 2.1 15 1-15 53-67 (608)
438 4akg_A Glutathione S-transfera 91.7 0.083 2.9E-06 47.8 2.5 21 1-21 653-673 (2695)
439 1t9h_A YLOQ, probable GTPase E 91.7 0.023 7.7E-07 40.6 -0.8 15 1-15 181-195 (307)
440 3clv_A RAB5 protein, putative; 91.7 0.095 3.3E-06 33.9 2.3 16 1-16 15-30 (208)
441 3tw8_B RAS-related protein RAB 91.6 0.082 2.8E-06 33.6 1.9 15 1-15 17-31 (181)
442 2bme_A RAB4A, RAS-related prot 91.6 0.094 3.2E-06 33.6 2.2 16 1-16 18-33 (186)
443 3bk7_A ABC transporter ATP-bin 91.6 0.079 2.7E-06 41.4 2.1 17 1-17 390-406 (607)
444 3ice_A Transcription terminati 91.6 0.09 3.1E-06 38.9 2.2 17 1-17 182-198 (422)
445 1ega_A Protein (GTP-binding pr 91.5 0.084 2.9E-06 37.4 2.0 15 1-15 16-30 (301)
446 3bk7_A ABC transporter ATP-bin 91.5 0.067 2.3E-06 41.8 1.6 17 1-17 125-141 (607)
447 2lkc_A Translation initiation 91.5 0.095 3.3E-06 33.3 2.1 15 1-15 16-30 (178)
448 2gno_A DNA polymerase III, gam 91.4 0.072 2.5E-06 37.9 1.6 17 1-17 26-42 (305)
449 2a9k_A RAS-related protein RAL 91.4 0.1 3.5E-06 33.3 2.2 16 1-16 26-41 (187)
450 2efe_B Small GTP-binding prote 91.4 0.11 3.6E-06 33.2 2.3 16 1-16 20-35 (181)
451 1ly1_A Polynucleotide kinase; 91.4 0.28 9.6E-06 31.3 4.3 44 109-152 76-123 (181)
452 2g6b_A RAS-related protein RAB 91.4 0.11 3.6E-06 33.1 2.2 16 1-16 18-33 (180)
453 1svi_A GTP-binding protein YSX 91.3 0.088 3E-06 34.1 1.8 16 1-16 31-46 (195)
454 1mh1_A RAC1; GTP-binding, GTPa 91.3 0.11 3.6E-06 33.3 2.2 15 1-15 13-27 (186)
455 3j16_B RLI1P; ribosome recycli 91.3 0.089 3.1E-06 41.1 2.1 17 1-17 386-402 (608)
456 3kkq_A RAS-related protein M-R 91.3 0.11 3.7E-06 33.3 2.2 16 1-16 26-41 (183)
457 2cxx_A Probable GTP-binding pr 91.3 0.09 3.1E-06 33.8 1.8 15 1-15 9-23 (190)
458 2wjy_A Regulator of nonsense t 91.3 0.11 3.6E-06 42.0 2.5 17 1-17 379-395 (800)
459 2oil_A CATX-8, RAS-related pro 91.3 0.11 3.7E-06 33.7 2.2 16 1-16 33-48 (193)
460 3cwq_A Para family chromosome 91.2 0.12 4E-06 34.5 2.4 16 2-17 10-25 (209)
461 1z6t_A APAF-1, apoptotic prote 91.2 0.092 3.2E-06 40.4 2.1 15 1-15 155-169 (591)
462 2qag_C Septin-7; cell cycle, c 91.1 0.08 2.7E-06 39.4 1.6 16 1-16 39-54 (418)
463 1vg8_A RAS-related protein RAB 91.0 0.12 4.1E-06 33.8 2.3 16 1-16 16-31 (207)
464 4a82_A Cystic fibrosis transme 91.0 0.042 1.4E-06 42.6 -0.0 17 1-17 375-391 (578)
465 2a5y_B CED-4; apoptosis; HET: 91.0 0.11 3.6E-06 40.0 2.2 15 1-15 160-174 (549)
466 1fzq_A ADP-ribosylation factor 91.0 0.1 3.5E-06 33.6 1.9 16 1-16 24-39 (181)
467 3ihw_A Centg3; RAS, centaurin, 90.9 0.12 4.2E-06 33.4 2.3 15 1-15 28-42 (184)
468 3lxx_A GTPase IMAP family memb 90.9 0.11 3.8E-06 35.2 2.1 15 1-15 37-51 (239)
469 2j9r_A Thymidine kinase; TK1, 90.9 0.14 4.7E-06 34.6 2.5 17 1-17 36-52 (214)
470 3pqc_A Probable GTP-binding pr 90.9 0.1 3.5E-06 33.6 1.8 16 1-16 31-46 (195)
471 3dz8_A RAS-related protein RAB 90.9 0.13 4.6E-06 33.3 2.4 17 1-17 31-47 (191)
472 2atv_A RERG, RAS-like estrogen 90.9 0.13 4.4E-06 33.5 2.3 16 1-16 36-51 (196)
473 3qf4_A ABC transporter, ATP-bi 90.8 0.053 1.8E-06 42.1 0.4 17 1-17 377-393 (587)
474 2gf9_A RAS-related protein RAB 90.8 0.13 4.4E-06 33.3 2.2 16 1-16 30-45 (189)
475 1gwn_A RHO-related GTP-binding 90.8 0.13 4.3E-06 34.1 2.2 16 1-16 36-51 (205)
476 3tkl_A RAS-related protein RAB 90.8 0.13 4.4E-06 33.3 2.2 16 1-16 24-39 (196)
477 2bbw_A Adenylate kinase 4, AK4 90.8 0.26 8.9E-06 33.5 3.9 41 111-152 104-145 (246)
478 2fg5_A RAB-22B, RAS-related pr 90.8 0.13 4.5E-06 33.4 2.3 16 1-16 31-46 (192)
479 3rhf_A Putative polyphosphate 90.7 0.54 1.8E-05 33.2 5.4 19 2-20 84-102 (289)
480 3bwd_D RAC-like GTP-binding pr 90.7 0.13 4.5E-06 32.7 2.2 16 1-16 16-31 (182)
481 2ew1_A RAS-related protein RAB 90.7 0.13 4.5E-06 33.9 2.2 16 1-16 34-49 (201)
482 3oes_A GTPase rhebl1; small GT 90.6 0.13 4.6E-06 33.6 2.2 16 1-16 32-47 (201)
483 1f6b_A SAR1; gtpases, N-termin 90.6 0.092 3.1E-06 34.4 1.4 15 1-15 33-47 (198)
484 2bov_A RAla, RAS-related prote 90.6 0.13 4.6E-06 33.5 2.2 16 1-16 22-37 (206)
485 3t5g_A GTP-binding protein RHE 90.6 0.13 4.3E-06 32.9 2.1 15 1-15 14-28 (181)
486 1g3q_A MIND ATPase, cell divis 90.6 0.15 5E-06 34.3 2.4 16 2-17 12-27 (237)
487 1z06_A RAS-related protein RAB 90.5 0.14 4.9E-06 33.0 2.3 15 1-15 28-42 (189)
488 1ksh_A ARF-like protein 2; sma 90.5 0.12 4.1E-06 33.2 1.9 15 1-15 26-40 (186)
489 2xzl_A ATP-dependent helicase 90.5 0.14 4.7E-06 41.4 2.5 15 1-15 383-397 (802)
490 1x3s_A RAS-related protein RAB 90.5 0.14 4.8E-06 33.0 2.2 16 1-16 23-38 (195)
491 3c5c_A RAS-like protein 12; GD 90.4 0.15 5E-06 33.0 2.3 16 1-16 29-44 (187)
492 3zq6_A Putative arsenical pump 90.4 0.15 5E-06 36.5 2.4 16 2-17 23-38 (324)
493 1zd9_A ADP-ribosylation factor 90.4 0.14 5E-06 33.0 2.2 15 1-15 30-44 (188)
494 2gf0_A GTP-binding protein DI- 90.4 0.15 5.1E-06 33.1 2.3 15 1-15 16-30 (199)
495 1ni3_A YCHF GTPase, YCHF GTP-b 90.4 0.13 4.6E-06 37.9 2.2 15 1-15 28-42 (392)
496 3ea0_A ATPase, para family; al 90.4 0.15 5.3E-06 34.4 2.4 17 2-18 14-30 (245)
497 2a5j_A RAS-related protein RAB 90.4 0.15 5E-06 33.1 2.2 15 1-15 29-43 (191)
498 3k9g_A PF-32 protein; ssgcid, 90.3 0.15 5.1E-06 35.1 2.3 16 2-17 37-52 (267)
499 3q9l_A Septum site-determining 90.3 0.16 5.3E-06 34.7 2.4 16 2-17 12-27 (260)
500 2fh5_B SR-beta, signal recogni 90.3 0.15 5.1E-06 33.6 2.2 16 1-16 15-30 (214)
No 1
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=99.96 E-value=2.3e-28 Score=167.32 Aligned_cols=113 Identities=50% Similarity=0.849 Sum_probs=100.9
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
||||||||+|+.|+++||++|||+++++|+.+..+++.|..+..++..|..+|++.+..++.+++.+..
T Consensus 37 pPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l~~~~----------- 105 (217)
T 3umf_A 37 GPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMIKLV----------- 105 (217)
T ss_dssp CTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHT-----------
T ss_pred CCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcc-----------
Confidence 899999999999999999999999999999999999999999999999999999999888877776542
Q ss_pred ccchhhhhhhhhhhhhHHHHHHHHhhcCCCCcceeecCCCCCchHHHHHHHHhCCCCeEEEeecCcchhh-hc
Q psy11030 81 PREKAQGEQFEREDVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQFEREINSPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 81 p~~~~q~~~~~~~~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~vi~l~~~~~~~~-~l 152 (153)
....+|++|||||+..|++.|++.+..+++||++++|+++++ ||
T Consensus 106 ----------------------------~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl 150 (217)
T 3umf_A 106 ----------------------------DKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRL 150 (217)
T ss_dssp ----------------------------TTCSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHH
T ss_pred ----------------------------ccccCcccccCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHH
Confidence 233456777788888899999888889999999999999998 86
No 2
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=99.95 E-value=3.5e-27 Score=160.58 Aligned_cols=105 Identities=36% Similarity=0.624 Sum_probs=96.8
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
||||||+|+|+.|+++||++|+|+++++|+.+..+++.|..+..++..|..+|++.+..++.+.+.. ..+||+|||
T Consensus 8 pPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~----~~~~ilDGf 83 (206)
T 3sr0_A 8 PPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPK----HGNVIFDGF 83 (206)
T ss_dssp STTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCS----SSCEEEESC
T ss_pred CCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhcc----CCceEecCC
Confidence 8999999999999999999999999999999999999999999999999999999999998888744 468999999
Q ss_pred ccchhhhhhhhhh--------------hhhHHHHHHHHhhcCC
Q psy11030 81 PREKAQGEQFERE--------------DVVMELLGEKVLKELP 109 (153)
Q Consensus 81 p~~~~q~~~~~~~--------------~~~~~~l~~Rl~~R~~ 109 (153)
|++..|++.+... +||++++.+|+..|+.
T Consensus 84 PRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~ 126 (206)
T 3sr0_A 84 PRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRI 126 (206)
T ss_dssp CCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEE
T ss_pred chhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCcc
Confidence 9999999877533 8999999999999863
No 3
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=99.94 E-value=3.2e-26 Score=157.32 Aligned_cols=112 Identities=34% Similarity=0.610 Sum_probs=97.5
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
||||||||+|+.|+++||++|+++++++|+.+..+++.|..+.+++..|..+|++.+..++.+.+.+.
T Consensus 16 ~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~------------ 83 (230)
T 3gmt_A 16 APGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEA------------ 83 (230)
T ss_dssp CTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSG------------
T ss_pred CCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCc------------
Confidence 79999999999999999999999999999999999999999999999999999999888887777543
Q ss_pred ccchhhhhhhhhhhhhHHHHHHHHhhcCCCCcceeecCCCCCchHHHHHHHHhCCCCeEEEeecCcchhh-hc
Q psy11030 81 PREKAQGEQFEREDVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQFEREINSPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 81 p~~~~q~~~~~~~~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~vi~l~~~~~~~~-~l 152 (153)
.+..+|++|||||+..|++.|++....+|+||+|++|+++++ ||
T Consensus 84 ----------------------------~~~~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl 128 (230)
T 3gmt_A 84 ----------------------------DCANGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERM 128 (230)
T ss_dssp ----------------------------GGTTCEEEESCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHH
T ss_pred ----------------------------ccCCCeEecCCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHH
Confidence 112356667777777788888776678999999999999998 86
No 4
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.85 E-value=5.9e-21 Score=133.04 Aligned_cols=107 Identities=36% Similarity=0.657 Sum_probs=96.3
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
||||||||+|+.|++++|+.|+++++++++.+..+++.|..+.+++..|..++++.+..++...+... ....+||+|||
T Consensus 37 ~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~-~~~~~~ildg~ 115 (243)
T 3tlx_A 37 APGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTP-QCKKGFILDGY 115 (243)
T ss_dssp CTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTSG-GGSSEEEEESC
T ss_pred CCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcc-cccCCEEecCC
Confidence 79999999999999999999999999999999889999999999999999999999988888888764 34678999999
Q ss_pred ccchhhhhhhhhh--------------hhhHHHHHHHHhhcC
Q psy11030 81 PREKAQGEQFERE--------------DVVMELLGEKVLKEL 108 (153)
Q Consensus 81 p~~~~q~~~~~~~--------------~~~~~~l~~Rl~~R~ 108 (153)
|++..|+..+... .+|++++.+|+..|.
T Consensus 116 p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~ 157 (243)
T 3tlx_A 116 PRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRL 157 (243)
T ss_dssp CCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred CCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCC
Confidence 9999988765321 999999999999986
No 5
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.83 E-value=9.1e-20 Score=124.97 Aligned_cols=107 Identities=34% Similarity=0.633 Sum_probs=91.7
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
+|||||||+|+.|++++|+.++++|+++++....+++.|..+.+++..|..++++...+++...+... ..+.++|+|||
T Consensus 13 ~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~-~~~~~~i~dg~ 91 (217)
T 3be4_A 13 APGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLG-VCVNGFVLDGF 91 (217)
T ss_dssp CTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTT-TTTTCEEEESC
T ss_pred CCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhcc-ccCCCEEEeCC
Confidence 69999999999999999999999999999988888889999999998899999998888888777653 44679999999
Q ss_pred ccchhhhhhhhh----------h----hhhHHHHHHHHhhcC
Q psy11030 81 PREKAQGEQFER----------E----DVVMELLGEKVLKEL 108 (153)
Q Consensus 81 p~~~~q~~~~~~----------~----~~~~~~l~~Rl~~R~ 108 (153)
|++..|+..+.. . ++|++++.+|+..|.
T Consensus 92 ~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~ 133 (217)
T 3be4_A 92 PRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRC 133 (217)
T ss_dssp CCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred CCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 999877765542 1 899999999999885
No 6
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.83 E-value=3.4e-20 Score=126.83 Aligned_cols=107 Identities=37% Similarity=0.665 Sum_probs=95.1
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
||||||||+|+.|++++|+.++++|+++++.+..+++.|..+.+++..|..++++.+..++...+... ....++|+|||
T Consensus 8 ~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~-~~~~~~ildg~ 86 (216)
T 3dl0_A 8 LPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKD-DCERGFLLDGF 86 (216)
T ss_dssp STTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSG-GGTTCEEEESC
T ss_pred CCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcc-cccCCEEEeCC
Confidence 79999999999999999999999999999999999999999999999999999998888888888764 34678999999
Q ss_pred ccchhhhhhhhhh--------------hhhHHHHHHHHhhcC
Q psy11030 81 PREKAQGEQFERE--------------DVVMELLGEKVLKEL 108 (153)
Q Consensus 81 p~~~~q~~~~~~~--------------~~~~~~l~~Rl~~R~ 108 (153)
|++..++..+... .+|++++.+|+.+|+
T Consensus 87 p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 128 (216)
T 3dl0_A 87 PRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRR 128 (216)
T ss_dssp CCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEE
T ss_pred CCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCC
Confidence 9999887655431 899999999999983
No 7
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.83 E-value=7.6e-20 Score=125.06 Aligned_cols=107 Identities=37% Similarity=0.668 Sum_probs=94.9
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
||||||||+|+.|++++|+.++++|+++++.+..+++.|..+.+++..|..++++.+..++.+.+... ....++|+||+
T Consensus 8 ~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~-~~~~~~ildg~ 86 (216)
T 3fb4_A 8 LPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKD-DCQKGFLLDGF 86 (216)
T ss_dssp STTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSG-GGTTCEEEESC
T ss_pred CCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcc-cCCCcEEEeCC
Confidence 79999999999999999999999999999999989999999999999999999998888888888764 33678999999
Q ss_pred ccchhhhhhhhhh--------------hhhHHHHHHHHhhcC
Q psy11030 81 PREKAQGEQFERE--------------DVVMELLGEKVLKEL 108 (153)
Q Consensus 81 p~~~~q~~~~~~~--------------~~~~~~l~~Rl~~R~ 108 (153)
|++..++..+... .+|++++.+|+.+|+
T Consensus 87 p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 128 (216)
T 3fb4_A 87 PRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRW 128 (216)
T ss_dssp CCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEE
T ss_pred CCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 9998887655431 899999999999983
No 8
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.82 E-value=1.6e-19 Score=123.45 Aligned_cols=112 Identities=38% Similarity=0.686 Sum_probs=87.8
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
||||||||+|+.|++++|+.++++|+++++.+..+++.|..+.+++..|..++++.+..++...+... ....
T Consensus 8 ~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~-~~~~------- 79 (214)
T 1e4v_A 8 APVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQE-DCRN------- 79 (214)
T ss_dssp STTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSG-GGGG-------
T ss_pred CCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhcc-ccCC-------
Confidence 79999999999999999999999999999988888888988888888888888887777666655432 1112
Q ss_pred ccchhhhhhhhhhhhhHHHHHHHHhhcCCCCcceeecCCCCCchHHHHHHHHhCCCCeEEEeecCcchhh-hc
Q psy11030 81 PREKAQGEQFEREDVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQFEREINSPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 81 p~~~~q~~~~~~~~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~vi~l~~~~~~~~-~l 152 (153)
++++||||+...|+..+.+....||+||++++|.+++. |+
T Consensus 80 --------------------------------~~i~dg~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~R~ 120 (214)
T 1e4v_A 80 --------------------------------GFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRI 120 (214)
T ss_dssp --------------------------------CEEEESCCCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHHH
T ss_pred --------------------------------CEEEeCCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHH
Confidence 34555666665566555544457899999999999888 75
No 9
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.81 E-value=2.1e-19 Score=123.28 Aligned_cols=108 Identities=33% Similarity=0.697 Sum_probs=91.8
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
||||||||+|+.|++++++.++++|+++++....+++.|..+.+++..|..++++.+..++.+.+......+.+||+|||
T Consensus 12 ~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~i~dg~ 91 (220)
T 1aky_A 12 PPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPACKNGFILDGF 91 (220)
T ss_dssp CTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGGGGSCEEEESC
T ss_pred CCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhccccCCCeEEeCC
Confidence 69999999999999999999999999999988888889999999999999999998888888877622234578999999
Q ss_pred ccchhhhhhhhh-----------h---hhhHHHHHHHHhhcC
Q psy11030 81 PREKAQGEQFER-----------E---DVVMELLGEKVLKEL 108 (153)
Q Consensus 81 p~~~~q~~~~~~-----------~---~~~~~~l~~Rl~~R~ 108 (153)
|++..|+..+.. . ++|++++.+|+..|.
T Consensus 92 ~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~ 133 (220)
T 1aky_A 92 PRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRL 133 (220)
T ss_dssp CCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred CCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCC
Confidence 998877643321 1 899999999999875
No 10
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.81 E-value=2.9e-19 Score=123.72 Aligned_cols=107 Identities=38% Similarity=0.662 Sum_probs=92.1
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
+|||||||+|+.|+++|++.++++++++++.+..++..|..+.+++..|..++++.+.+++...+... ....+||+|||
T Consensus 24 ~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~-~~~~g~ildg~ 102 (233)
T 1ak2_A 24 PPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETP-PCKNGFLLDGF 102 (233)
T ss_dssp CTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSG-GGTTCEEEESC
T ss_pred CCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhcc-cccCcEEEeCC
Confidence 69999999999999999999999999999988888889999999999999999998888888877654 23578999999
Q ss_pred ccchhhhhhhhhh--------------hhhHHHHHHHHhhcC
Q psy11030 81 PREKAQGEQFERE--------------DVVMELLGEKVLKEL 108 (153)
Q Consensus 81 p~~~~q~~~~~~~--------------~~~~~~l~~Rl~~R~ 108 (153)
|++..|+..+... ++|++++.+|+..|.
T Consensus 103 ~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~ 144 (233)
T 1ak2_A 103 PRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRL 144 (233)
T ss_dssp CCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCE
T ss_pred CCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 9998776543211 899999999999874
No 11
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.80 E-value=8.3e-19 Score=117.99 Aligned_cols=108 Identities=59% Similarity=0.972 Sum_probs=92.5
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
||||||||+|+.|++++|++++++|++++.....++..|..+.+++..|..++.+....++...+......+.++|+||+
T Consensus 17 ~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~vi~d~~ 96 (196)
T 2c95_A 17 GPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKVNTSKGFLIDGY 96 (196)
T ss_dssp CTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTTCSCEEEESC
T ss_pred CCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhccccCCcEEEeCC
Confidence 69999999999999999999999999999988777888888888888899999888888888877766556789999999
Q ss_pred ccchhhhhhhhhh----------hhhHHHHHHHHhhcC
Q psy11030 81 PREKAQGEQFERE----------DVVMELLGEKVLKEL 108 (153)
Q Consensus 81 p~~~~q~~~~~~~----------~~~~~~l~~Rl~~R~ 108 (153)
|+...+...+... ++|++++.+|+.+|.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~ 134 (196)
T 2c95_A 97 PREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRG 134 (196)
T ss_dssp CCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccC
Confidence 9988776543211 999999999999885
No 12
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.80 E-value=2.8e-19 Score=122.86 Aligned_cols=113 Identities=37% Similarity=0.679 Sum_probs=86.8
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
||||||||+|+.|++++++.++++|++++.....++..|..+.+++..|..++++....++.+.+........+
T Consensus 13 ~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------ 86 (222)
T 1zak_A 13 APASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQENG------ 86 (222)
T ss_dssp STTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHHHHTC------
T ss_pred CCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhccccCCc------
Confidence 79999999999999999999999999999988778888999999988898888887666555554321101123
Q ss_pred ccchhhhhhhhhhhhhHHHHHHHHhhcCCCCcceeecCCCCCchHHHHHHHHhCCCCeEEEeecCcchhh-hc
Q psy11030 81 PREKAQGEQFEREDVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQFEREINSPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 81 p~~~~q~~~~~~~~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~vi~l~~~~~~~~-~l 152 (153)
+++||||++..+++.+......|++||+|+++.+++. |+
T Consensus 87 ---------------------------------~vidg~~~~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~ 126 (222)
T 1zak_A 87 ---------------------------------WLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERV 126 (222)
T ss_dssp ---------------------------------EEEESCCCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHH
T ss_pred ---------------------------------EEEECCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHH
Confidence 4445666665555555544457899999999999988 76
No 13
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.79 E-value=9.7e-19 Score=120.36 Aligned_cols=106 Identities=27% Similarity=0.535 Sum_probs=91.6
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
||||||||+|+.|++++|+.++++|+++++.+..+++.|..+.+++..|..++++.+..++...+.... +.++|+||+
T Consensus 8 ~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~--g~~vIlDg~ 85 (223)
T 2xb4_A 8 PNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESKG--KDGWLLDGF 85 (223)
T ss_dssp CTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHC--TTCEEEESC
T ss_pred CCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhccc--CCeEEEeCC
Confidence 799999999999999999999999999999877778888889999989999999988888888877642 679999999
Q ss_pred ccchhhhhhhhh----------h----hhhHHHHHHHHhhcC
Q psy11030 81 PREKAQGEQFER----------E----DVVMELLGEKVLKEL 108 (153)
Q Consensus 81 p~~~~q~~~~~~----------~----~~~~~~l~~Rl~~R~ 108 (153)
|++..++..+.. . ++|++++.+|+..|.
T Consensus 86 ~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 127 (223)
T 2xb4_A 86 PRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRR 127 (223)
T ss_dssp CCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBC
T ss_pred cCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHccc
Confidence 998777655421 1 899999999999886
No 14
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.79 E-value=1.9e-18 Score=116.49 Aligned_cols=109 Identities=50% Similarity=0.883 Sum_probs=92.8
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
||||||||+|+.|++++|+.++++|++++.....+++.+..+.+++..|..++++....++.+.+......+..+|+||+
T Consensus 20 ~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~vi~dg~ 99 (199)
T 2bwj_A 20 GPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASLGDTRGFLIDGY 99 (199)
T ss_dssp CTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTSCSCEEEETC
T ss_pred CCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcccccCccEEEeCC
Confidence 69999999999999999999999999999988777788888888888899899988888887777766556789999999
Q ss_pred ccchhhhhhhhh---h-------hhhHHHHHHHHhhcCC
Q psy11030 81 PREKAQGEQFER---E-------DVVMELLGEKVLKELP 109 (153)
Q Consensus 81 p~~~~q~~~~~~---~-------~~~~~~l~~Rl~~R~~ 109 (153)
|.+..+...+.. . +||++++.+|+.+|..
T Consensus 100 ~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~ 138 (199)
T 2bwj_A 100 PREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSR 138 (199)
T ss_dssp CSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCC
Confidence 998777654432 1 9999999999998853
No 15
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.78 E-value=2.8e-18 Score=116.12 Aligned_cols=107 Identities=34% Similarity=0.630 Sum_probs=89.4
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
||||||||+|+.|++.+|++++++|+++++.+..++..|..+.+++..|..++++....++.+.+... ....++|+||+
T Consensus 28 ~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~vIldg~ 106 (201)
T 2cdn_A 28 PPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNP-DAANGFILDGY 106 (201)
T ss_dssp CTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSG-GGTTCEEEESC
T ss_pred CCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHHhcc-cCCCeEEEECC
Confidence 69999999999999999999999999999988878888888889888899999888777777766543 34578999999
Q ss_pred ccchhhhhhhhh----------h----hhhHHHHHHHHhhcC
Q psy11030 81 PREKAQGEQFER----------E----DVVMELLGEKVLKEL 108 (153)
Q Consensus 81 p~~~~q~~~~~~----------~----~~~~~~l~~Rl~~R~ 108 (153)
|++..+...+.. . +||++++.+|+..|.
T Consensus 107 ~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~ 148 (201)
T 2cdn_A 107 PRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRG 148 (201)
T ss_dssp CCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 988766543221 1 899999999999884
No 16
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.77 E-value=7.8e-18 Score=114.01 Aligned_cols=114 Identities=40% Similarity=0.787 Sum_probs=86.2
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHh-cCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVN-SGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDG 79 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg 79 (153)
||||||||+|+.|++++|+.++++|++++.... .++..+..+..++..|...+++....++.+.+.....
T Consensus 23 ~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~l~--------- 93 (203)
T 1ukz_A 23 GPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDNVK--------- 93 (203)
T ss_dssp STTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH---------
T ss_pred CCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhhc---------
Confidence 699999999999999999999999999998754 4677777787777788877776655555444432111
Q ss_pred CccchhhhhhhhhhhhhHHHHHHHHhhcCCCCcceeecCCCCCchHHHHHHHHhCCCCeEEEeecCcchhh-hc
Q psy11030 80 YPREKAQGEQFEREDVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQFEREINSPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 80 ~p~~~~q~~~~~~~~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~vi~l~~~~~~~~-~l 152 (153)
....++++||+|+...++..++.....+|++|++++|.+++. |+
T Consensus 94 -----------------------------~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl 138 (203)
T 1ukz_A 94 -----------------------------ANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERL 138 (203)
T ss_dssp -----------------------------TTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHH
T ss_pred -----------------------------cCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHH
Confidence 111346667777777777777766667899999999999887 75
No 17
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.77 E-value=3.9e-18 Score=117.50 Aligned_cols=106 Identities=30% Similarity=0.586 Sum_probs=90.3
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
||||||||+|+.|++++|+.++++|++++.....+++.|..+.+++..|..++++....++.+.+... ...+||+|++
T Consensus 15 ~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~--~~~~~vid~~ 92 (227)
T 1zd8_A 15 APGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNL--TQYSWLLDGF 92 (227)
T ss_dssp CTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTC--TTSCEEEESC
T ss_pred CCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcc--cCCCEEEeCC
Confidence 79999999999999999999999999999988778888999999998899999887777777776542 3578999999
Q ss_pred ccchhhhhhhhhh---------hhhHHHHHHHHhhcC
Q psy11030 81 PREKAQGEQFERE---------DVVMELLGEKVLKEL 108 (153)
Q Consensus 81 p~~~~q~~~~~~~---------~~~~~~l~~Rl~~R~ 108 (153)
|.+..|...+... ++|.+++.+|+..|.
T Consensus 93 ~~~~~~~~~l~~~~~~~~vi~L~~~~~~~~~R~~~R~ 129 (227)
T 1zd8_A 93 PRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTARW 129 (227)
T ss_dssp CCSHHHHHHHHTTSCCCEEEEEECCHHHHHHHHTCEE
T ss_pred CCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHcCc
Confidence 9988776554322 999999999999874
No 18
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.76 E-value=1.5e-17 Score=111.38 Aligned_cols=106 Identities=38% Similarity=0.743 Sum_probs=90.1
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
+|||||||+|+.|++.+|+.++++|+++++....+++.+..+.+++..|...+++....++...+... .+..+|+||+
T Consensus 14 ~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~--~~~~vi~d~~ 91 (194)
T 1qf9_A 14 GPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDAN--QGKNFLVDGF 91 (194)
T ss_dssp STTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTS--TTCCEEEETC
T ss_pred CCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc--CCCCEEEeCc
Confidence 69999999999999999999999999999988778888899999998999888888778777777653 4578999999
Q ss_pred ccchhhhhhh----hh--h-------hhhHHHHHHHHhhcC
Q psy11030 81 PREKAQGEQF----ER--E-------DVVMELLGEKVLKEL 108 (153)
Q Consensus 81 p~~~~q~~~~----~~--~-------~~~~~~l~~Rl~~R~ 108 (153)
|++..+...+ .. . ++|++++.+|+..|.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~ 132 (194)
T 1qf9_A 92 PRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRG 132 (194)
T ss_dssp CCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhcc
Confidence 9987766544 21 1 999999999999885
No 19
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.73 E-value=3.1e-17 Score=109.50 Aligned_cols=102 Identities=38% Similarity=0.727 Sum_probs=84.1
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
||||||||+|+.|++++|+.++++|+++++.+..+++.|..+.+++..|...+++.....+...+. .++|+||+
T Consensus 12 ~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~------~~~i~dg~ 85 (186)
T 3cm0_A 12 PPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELA------ERVIFDGF 85 (186)
T ss_dssp CTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCC------SEEEEESC
T ss_pred CCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhc------CCEEEeCC
Confidence 799999999999999999999999999999877778888888899988998998877766655542 24999999
Q ss_pred ccchhhhhhhhh----------h----hhhHHHHHHHHhhcC
Q psy11030 81 PREKAQGEQFER----------E----DVVMELLGEKVLKEL 108 (153)
Q Consensus 81 p~~~~q~~~~~~----------~----~~~~~~l~~Rl~~R~ 108 (153)
|++..+...+.. . ++|++++.+|+..|.
T Consensus 86 ~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~ 127 (186)
T 3cm0_A 86 PRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRA 127 (186)
T ss_dssp CCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence 988766543211 1 899999999999884
No 20
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.73 E-value=7e-17 Score=108.31 Aligned_cols=108 Identities=37% Similarity=0.679 Sum_probs=85.6
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhc-CCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhh---CCCCCcEe
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNS-GSARGADLSKVMKDGGLVSTDVVMELLGEKVLKE---LPNSKGYL 76 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~i 76 (153)
+|||||||+|+.|++++|++++++|++++..... ++..+..+.+++..|...+++....++...+... ......+|
T Consensus 11 ~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~vi 90 (196)
T 1tev_A 11 GPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAANAQKNKFL 90 (196)
T ss_dssp CTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred CCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhhhccccCCCeEE
Confidence 6999999999999999999999999999987754 5667777888888888888887766665554432 23467899
Q ss_pred ecCCccchhhhhhhhh----------h---hhhHHHHHHHHhhcC
Q psy11030 77 IDGYPREKAQGEQFER----------E---DVVMELLGEKVLKEL 108 (153)
Q Consensus 77 ldg~p~~~~q~~~~~~----------~---~~~~~~l~~Rl~~R~ 108 (153)
+||+|.+..+...+.. . ++|++++.+|+.+|.
T Consensus 91 ~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~ 135 (196)
T 1tev_A 91 IDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERG 135 (196)
T ss_dssp EESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHccc
Confidence 9999998776543321 1 899999999999885
No 21
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.62 E-value=1.5e-15 Score=100.07 Aligned_cols=138 Identities=19% Similarity=0.184 Sum_probs=85.1
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcC----CcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEe
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSG----SARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYL 76 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i 76 (153)
||||||||+|+.| +++|+.++++++++++..... ...+.....+... .+.......+...+.. .....+|
T Consensus 9 ~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~--~~~~~vi 82 (179)
T 3lw7_A 9 MPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREI---YGDGVVARLCVEELGT--SNHDLVV 82 (179)
T ss_dssp CTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHH---HCTTHHHHHHHHHHCS--CCCSCEE
T ss_pred CCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhh---CCHHHHHHHHHHHHHh--cCCCeEE
Confidence 7999999999999 999999999999999976542 1222223232221 1122234444444432 4467899
Q ss_pred ecCCccchhhhhhhhhh----------hhhHHHHHHHHhhcCCCCcceeecCCCCCchHHHH-------HHHHhCCCCeE
Q psy11030 77 IDGYPREKAQGEQFERE----------DVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQ-------FEREINSPTGI 139 (153)
Q Consensus 77 ldg~p~~~~q~~~~~~~----------~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~-------~~~~~~~~~~v 139 (153)
+||+ ....+...+... ++|++++.+|+..|.... ++........+. .......+|++
T Consensus 83 ~dg~-~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~-----~~~~~~~~~~r~~~~~~~~~~~~~~~ad~v 156 (179)
T 3lw7_A 83 FDGV-RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSD-----DSKEISELIRRDREELKLGIGEVIAMADYI 156 (179)
T ss_dssp EECC-CCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC---------CCCHHHHHHHHHHHHHHTHHHHHHTCSEE
T ss_pred EeCC-CCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCC-----CcchHHHHHHHHHhhhccChHhHHHhCCEE
Confidence 9999 777666554432 899999999999885321 111111111110 12233478999
Q ss_pred EEeecCcchhh
Q psy11030 140 VYFEVPDDVMT 150 (153)
Q Consensus 140 i~l~~~~~~~~ 150 (153)
|.++.+.+++.
T Consensus 157 Id~~~~~~~~~ 167 (179)
T 3lw7_A 157 ITNDSNYEEFK 167 (179)
T ss_dssp EECCSCHHHHH
T ss_pred EECCCCHHHHH
Confidence 99887766543
No 22
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.58 E-value=1e-14 Score=99.03 Aligned_cols=139 Identities=15% Similarity=0.232 Sum_probs=89.2
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcC-----CCCCHH------------------HH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDG-----GLVSTD------------------VV 57 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~------------------~~ 57 (153)
++||||||+++.|++ +|++++++|.+.++.+..+...-..+.+.+..+ ..+... ++
T Consensus 17 gigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~~~~L~~i~ 95 (210)
T 4i1u_A 17 GIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDARRRLEAIT 95 (210)
T ss_dssp CTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHHHHHHHHHh
Confidence 479999999999988 999999999999998877666555555555322 223332 23
Q ss_pred HHHHHHHHhhhC-CCCCc-EeecCCccchh-hh--hhhhhh---hhhHHHHHHHHhhcCCCCcceeecCCCCCchHHHH-
Q psy11030 58 MELLGEKVLKEL-PNSKG-YLIDGYPREKA-QG--EQFERE---DVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQ- 128 (153)
Q Consensus 58 ~~~l~~~~~~~~-~~~~~-~ildg~p~~~~-q~--~~~~~~---~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~- 128 (153)
...+.+.+.... ..... +|+| .|...+ .. ..++.. .||++++.+|+++|+ |++......+.
T Consensus 96 HP~I~~~~~~~~~~~~~~~vv~d-~pLL~E~~~~~~~~D~vi~V~ap~e~r~~Rl~~Rd---------g~s~eea~~ri~ 165 (210)
T 4i1u_A 96 HPLIRAETEREARDAQGPYVIFV-VPLLVESRNWKARCDRVLVVDCPVDTQIARVMQRN---------GFTREQVEAIIA 165 (210)
T ss_dssp HHHHHHHHHHHHHTCCSSSEEEE-CTTCTTCHHHHHHCSEEEEEECCHHHHHHHHHHHH---------CCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCEEEEE-EecccccCCccccCCeEEEEECCHHHHHHHHHhcC---------CCCHHHHHHHHH
Confidence 333333333221 12233 4555 455444 21 223333 999999999999994 55554443332
Q ss_pred ----HHHHhCCCCeEEEee-cCcchhh
Q psy11030 129 ----FEREINSPTGIVYFE-VPDDVMT 150 (153)
Q Consensus 129 ----~~~~~~~~~~vi~l~-~~~~~~~ 150 (153)
.++....+|.||.++ .+.+.+.
T Consensus 166 ~Q~~~eek~~~AD~VIdN~~gsle~l~ 192 (210)
T 4i1u_A 166 RQATREARLAAADDVIVNDAATPDALA 192 (210)
T ss_dssp HSCCHHHHHHTCSEEEECSSCCHHHHH
T ss_pred HcCChHHHHHhCCEEEECCCCCHHHHH
Confidence 245556899999999 8877664
No 23
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.51 E-value=2.7e-13 Score=94.32 Aligned_cols=106 Identities=28% Similarity=0.586 Sum_probs=81.5
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
||||||||+++.|++++|+.+++.|++++.........+..+..++..+...++..+.+.+...+... ...+|++||+
T Consensus 35 ~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~--~~~~~il~g~ 112 (246)
T 2bbw_A 35 PPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR--RGQHWLLDGF 112 (246)
T ss_dssp CTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC--TTSCEEEESC
T ss_pred CCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc--CCCeEEEECC
Confidence 79999999999999999999999999998865545556666777777788888876666666555432 3467899999
Q ss_pred ccchhhhhhhhhh---------hhhHHHHHHHHhhcC
Q psy11030 81 PREKAQGEQFERE---------DVVMELLGEKVLKEL 108 (153)
Q Consensus 81 p~~~~q~~~~~~~---------~~~~~~l~~Rl~~R~ 108 (153)
|+...++..+... ++|++++.+|+..|.
T Consensus 113 ~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~ 149 (246)
T 2bbw_A 113 PRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRW 149 (246)
T ss_dssp CCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred CCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCC
Confidence 9876655444211 889999999998764
No 24
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.42 E-value=7.6e-13 Score=89.57 Aligned_cols=32 Identities=34% Similarity=0.422 Sum_probs=28.8
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVN 33 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~ 33 (153)
||||||||+++.|++ +|++++++|++.+....
T Consensus 10 ~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~ 41 (206)
T 1jjv_A 10 GIGSGKTTIANLFTD-LGVPLVDADVVAREVVA 41 (206)
T ss_dssp STTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHH-CCCcccchHHHHHHHcc
Confidence 799999999999988 99999999999887543
No 25
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.39 E-value=4.7e-12 Score=85.43 Aligned_cols=97 Identities=19% Similarity=0.252 Sum_probs=61.3
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
||||||||+|+.|++.+|+.+++.|++...... .....|....+......+ ..+......+..+|+|+.
T Consensus 26 ~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~----------~~~~~g~~~~~~~~~~~~-~~l~~~~~~~~~vivd~~ 94 (202)
T 3t61_A 26 VSGSGKSSVGEAIAEACGYPFIEGDALHPPENI----------RKMSEGIPLTDDDRWPWL-AAIGERLASREPVVVSCS 94 (202)
T ss_dssp STTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHH----------HHHHHTCCCCHHHHHHHH-HHHHHHHTSSSCCEEECC
T ss_pred CCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhH----------HHHhcCCCCCchhhHHHH-HHHHHHHhcCCCEEEECC
Confidence 699999999999999999999999887533111 111123333332222221 222222244678999987
Q ss_pred ccchhhhhhhhh------h----hhhHHHHHHHHhhcC
Q psy11030 81 PREKAQGEQFER------E----DVVMELLGEKVLKEL 108 (153)
Q Consensus 81 p~~~~q~~~~~~------~----~~~~~~l~~Rl~~R~ 108 (153)
+........+.. . ++|.+++.+|+.+|.
T Consensus 95 ~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~ 132 (202)
T 3t61_A 95 ALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRT 132 (202)
T ss_dssp CCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhh
Confidence 655544444332 1 899999999999985
No 26
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.38 E-value=8.7e-13 Score=88.96 Aligned_cols=94 Identities=18% Similarity=0.202 Sum_probs=58.4
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHc-CCCCCHHHHHHHHHHHHhhhCCCCCcEeec-
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKD-GGLVSTDVVMELLGEKVLKELPNSKGYLID- 78 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~ild- 78 (153)
||||||||+++.|++.+|+.++++|+++..... ..+..++.. |... ....-...+... ....++|++
T Consensus 33 ~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~g------~~i~~~~~~~~~~~----~~~~e~~~l~~l-~~~~~~vi~~ 101 (199)
T 3vaa_A 33 YMGAGKTTLGKAFARKLNVPFIDLDWYIEERFH------KTVGELFTERGEAG----FRELERNMLHEV-AEFENVVIST 101 (199)
T ss_dssp CTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHT------SCHHHHHHHHHHHH----HHHHHHHHHHHH-TTCSSEEEEC
T ss_pred CCCCCHHHHHHHHHHHcCCCEEcchHHHHHHhC------CcHHHHHHhcChHH----HHHHHHHHHHHH-hhcCCcEEEC
Confidence 799999999999999999999999999877532 222222211 1111 111111222222 234677777
Q ss_pred --CCccchhhhhhhhhh------hhhHHHHHHHHh
Q psy11030 79 --GYPREKAQGEQFERE------DVVMELLGEKVL 105 (153)
Q Consensus 79 --g~p~~~~q~~~~~~~------~~~~~~l~~Rl~ 105 (153)
|.+........+... ++|.+++.+|+.
T Consensus 102 ggg~~~~~~~~~~l~~~~~vi~L~~~~e~l~~Rl~ 136 (199)
T 3vaa_A 102 GGGAPCFYDNMEFMNRTGKTVFLNVHPDVLFRRLR 136 (199)
T ss_dssp CTTGGGSTTHHHHHHHHSEEEEEECCHHHHHHHHH
T ss_pred CCcEEccHHHHHHHHcCCEEEEEECCHHHHHHHHh
Confidence 455544444443322 999999999998
No 27
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.34 E-value=6.4e-12 Score=82.99 Aligned_cols=99 Identities=22% Similarity=0.247 Sum_probs=60.3
Q ss_pred CCCCChHHHHHHHHH-HhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCC--HHHHHHHHHHHHhhhC---CCCCc
Q psy11030 1 GPGSGKGTQAEKIVQ-KYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVS--TDVVMELLGEKVLKEL---PNSKG 74 (153)
Q Consensus 1 ppGsGKst~a~~L~~-~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~---~~~~~ 74 (153)
||||||||+|+.|++ .+++.+++++. ++..+...+. +. . ..... .......+...+.... ..+.+
T Consensus 10 ~~GsGKST~a~~L~~~~~~~~~i~~d~-~r~~~~~~~~-~~-~------~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~ 80 (181)
T 1ly1_A 10 CPGSGKSTWAREFIAKNPGFYNINRDD-YRQSIMAHEE-RD-E------YKYTKKKEGIVTGMQFDTAKSILYGGDSVKG 80 (181)
T ss_dssp CTTSSHHHHHHHHHHHSTTEEEECHHH-HHHHHTTSCC-GG-G------CCCCHHHHHHHHHHHHHHHHHHHTSCSSCCE
T ss_pred CCCCCHHHHHHHHHhhcCCcEEecHHH-HHHHhhCCCc-cc-h------hhhchhhhhHHHHHHHHHHHHHHhhccCCCe
Confidence 799999999999999 68999999855 4444332111 10 0 00000 0111222223333332 45678
Q ss_pred EeecCCccchhhhhhhhh---------h----hhhHHHHHHHHhhcC
Q psy11030 75 YLIDGYPREKAQGEQFER---------E----DVVMELLGEKVLKEL 108 (153)
Q Consensus 75 ~ildg~p~~~~q~~~~~~---------~----~~~~~~l~~Rl~~R~ 108 (153)
+|+|+++....+...+.. . +||.+++.+|+..|.
T Consensus 81 vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~ 127 (181)
T 1ly1_A 81 VIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRG 127 (181)
T ss_dssp EEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCG
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhccc
Confidence 999999876555433321 1 889999999999875
No 28
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.34 E-value=6.5e-12 Score=84.35 Aligned_cols=34 Identities=26% Similarity=0.392 Sum_probs=31.4
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhc
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNS 34 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~ 34 (153)
++||||||+|+.|++.+|++++++|+++++.+..
T Consensus 20 ~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~ 53 (192)
T 2grj_A 20 KIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEE 53 (192)
T ss_dssp STTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHH
Confidence 6899999999999999999999999999997754
No 29
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.34 E-value=7.9e-12 Score=81.79 Aligned_cols=97 Identities=13% Similarity=0.156 Sum_probs=57.1
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHc-CCCCCHHHHHHHHHHHHhhhCCCCCcEeec-
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKD-GGLVSTDVVMELLGEKVLKELPNSKGYLID- 78 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~ild- 78 (153)
+|||||||+|+.|++++|++++++|++.+... |..+.+++.. |. .....+-...+... .....+|++
T Consensus 8 ~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~------g~~~~~~~~~~~~----~~~~~~~~~~l~~l-~~~~~~Vi~~ 76 (168)
T 2pt5_A 8 FMCSGKSTVGSLLSRSLNIPFYDVDEEVQKRE------GLSIPQIFEKKGE----AYFRKLEFEVLKDL-SEKENVVIST 76 (168)
T ss_dssp CTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH------TSCHHHHHHHSCH----HHHHHHHHHHHHHH-TTSSSEEEEC
T ss_pred CCCCCHHHHHHHHHHHhCCCEEECcHHHHHHc------CCCHHHHHHHhCh----HHHHHHHHHHHHHH-hccCCeEEEC
Confidence 68999999999999999999999999988754 2223333221 21 11111111122222 224566765
Q ss_pred CC--ccchhhhhhhhh---h---hhhHHHHHHHHhhcC
Q psy11030 79 GY--PREKAQGEQFER---E---DVVMELLGEKVLKEL 108 (153)
Q Consensus 79 g~--p~~~~q~~~~~~---~---~~~~~~l~~Rl~~R~ 108 (153)
|. +........+.. . ++|++++.+|+..|.
T Consensus 77 g~~~~~~~~~~~~l~~~~~~i~l~~~~e~~~~R~~~r~ 114 (168)
T 2pt5_A 77 GGGLGANEEALNFMKSRGTTVFIDIPFEVFLERCKDSK 114 (168)
T ss_dssp CHHHHTCHHHHHHHHTTSEEEEEECCHHHHHHHCBCTT
T ss_pred CCCEeCCHHHHHHHHcCCEEEEEECCHHHHHHHHhCCC
Confidence 42 222222222221 1 999999999999864
No 30
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.32 E-value=6.3e-12 Score=83.98 Aligned_cols=48 Identities=29% Similarity=0.341 Sum_probs=34.3
Q ss_pred CCCCChHHHHHHHHHHh---CCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCH
Q psy11030 1 GPGSGKGTQAEKIVQKY---GYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVST 54 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~---~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 54 (153)
+|||||||+|+.|++++ |++++++++ ...+..|..+.+++..|...+.
T Consensus 8 ~~GsGKsT~~~~L~~~l~~~g~~~i~~d~------~~~~~~~~~i~~~~~~g~~~~~ 58 (195)
T 2pbr_A 8 IDGSGKTTQAKKLYEYLKQKGYFVSLYRE------PGGTKVGEVLREILLTEELDER 58 (195)
T ss_dssp STTSCHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEEeC------CCCCchHHHHHHHHcCCCCCHH
Confidence 69999999999999998 999998853 1233445556666655654443
No 31
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.32 E-value=8.3e-12 Score=88.53 Aligned_cols=140 Identities=14% Similarity=0.118 Sum_probs=76.9
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcC-----CCCCHHHH------------------
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDG-----GLVSTDVV------------------ 57 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~------------------ 57 (153)
+|||||||+|+.|+ .+|++++++|++.++.+..+......+.+.+... ..+....+
T Consensus 83 ~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~~~~~~~l~~i~ 161 (281)
T 2f6r_A 83 ISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGNKKQMKILTDIV 161 (281)
T ss_dssp CTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCCHHHHHHhhccc
Confidence 68999999999999 6999999999999887655443333333222111 11111111
Q ss_pred HHHH----HHHHhhhC-CCCCcEeecCCccchhhh-hhhhhh---hhhHHHHHHHHhhcCCCCcceeecCCCCCchHHHH
Q psy11030 58 MELL----GEKVLKEL-PNSKGYLIDGYPREKAQG-EQFERE---DVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQ 128 (153)
Q Consensus 58 ~~~l----~~~~~~~~-~~~~~~ildg~p~~~~q~-~~~~~~---~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~ 128 (153)
...+ .+.+.... .....+|+||........ ..++.. +||++++.+|+.+|. |.+......+.
T Consensus 162 ~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~~~~~~~~d~vI~l~a~~ev~~~Rl~~R~---------g~s~e~~~~ri 232 (281)
T 2f6r_A 162 WPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEAGWQSMVHEVWTVVIPETEAVRRIVERD---------GLSEAAAQSRL 232 (281)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHHHHHH---------CCCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhccCCCEEEEEechhhccchHHhCCEEEEEcCCHHHHHHHHHHcC---------CCCHHHHHHHH
Confidence 1111 12221111 113578999864332211 111112 999999999999884 33322111111
Q ss_pred -----HHHHhCCCCeEEEeecCcchhh
Q psy11030 129 -----FEREINSPTGIVYFEVPDDVMT 150 (153)
Q Consensus 129 -----~~~~~~~~~~vi~l~~~~~~~~ 150 (153)
..+....+|+||.++.+.+++.
T Consensus 233 ~~q~~~~~~~~~AD~vIdn~~s~eel~ 259 (281)
T 2f6r_A 233 QSQMSGQQLVEQSNVVLSTLWESHVTQ 259 (281)
T ss_dssp HTSCCHHHHHHTCSEEEECSSCHHHHH
T ss_pred HHcCChHhhHhhCCEEEECCCCHHHHH
Confidence 1222236899988887666543
No 32
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.31 E-value=1.8e-11 Score=81.93 Aligned_cols=116 Identities=21% Similarity=0.302 Sum_probs=65.2
Q ss_pred CCCCChHHHHHHHHHHh---CCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHH-------HHHHHHhhhCC
Q psy11030 1 GPGSGKGTQAEKIVQKY---GYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVME-------LLGEKVLKELP 70 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~---~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~ 70 (153)
||||||||+|+.|++.+ |+.++.+.. ..+++.|..+.+++..+...+.....- .+.. +.....
T Consensus 8 ~~GsGKsT~~~~L~~~l~~~g~~v~~~~~------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-i~~~l~ 80 (197)
T 2z0h_A 8 IDGSGKSTQIQLLAQYLEKRGKKVILKRE------PGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE-IKQYLS 80 (197)
T ss_dssp STTSSHHHHHHHHHHHHHHCCC-EEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH-HTTC--
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEeeC------CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHHh
Confidence 68999999999999999 999886633 223455566666655555444321111 1112 322223
Q ss_pred CCCcEeecCCccchhhhhhhhhhhhhHHHHHHHHhhcCCCCcceeecCCCCCchH-----HHHHHHHhCCCCeEEEeecC
Q psy11030 71 NSKGYLIDGYPREKAQGEQFEREDVVMELLGEKVLKELPNSKGYLIDGYPREKAQ-----GEQFEREINSPTGIVYFEVP 145 (153)
Q Consensus 71 ~~~~~ildg~p~~~~q~~~~~~~~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~-----~~~~~~~~~~~~~vi~l~~~ 145 (153)
.+..+|+|.+... ++..+|+++.... ...+......||++|++++|
T Consensus 81 ~g~~vi~dr~~~s-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~ 131 (197)
T 2z0h_A 81 EGYAVLLDRYTDS-----------------------------SVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVD 131 (197)
T ss_dssp --CEEEEESCHHH-----------------------------HHHHTTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECC
T ss_pred CCCEEEECCChhH-----------------------------HHHHHHhccCCCHHHHHHHHHHhcCCCCCCEEEEEeCC
Confidence 3455666765210 0111245544322 22223334579999999999
Q ss_pred cchhh-hc
Q psy11030 146 DDVMT-IL 152 (153)
Q Consensus 146 ~~~~~-~l 152 (153)
++++. |+
T Consensus 132 ~e~~~~Rl 139 (197)
T 2z0h_A 132 VETALKRK 139 (197)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99988 86
No 33
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.31 E-value=1.2e-11 Score=82.59 Aligned_cols=102 Identities=13% Similarity=0.171 Sum_probs=58.8
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
+|||||||+|+.|++++|+.+++.|.+...........+......+. ......+...+......+.++|+|++
T Consensus 13 ~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~g~~vi~d~~ 85 (193)
T 2rhm_A 13 HPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRRVG-------ATAIMMLYHTAATILQSGQSLIMESN 85 (193)
T ss_dssp STTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHCCCSHHHHHHHH-------HHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHhcCccchHHHHHhh-------HHHHHHHHHHHHHHHhCCCeEEEecC
Confidence 69999999999999999999999977755433210000111000000 00112222233332234678999998
Q ss_pred ccchhhhhh---hhh------h----hhhHHHHHHHHhhcCC
Q psy11030 81 PREKAQGEQ---FER------E----DVVMELLGEKVLKELP 109 (153)
Q Consensus 81 p~~~~q~~~---~~~------~----~~~~~~l~~Rl~~R~~ 109 (153)
+........ +.. . ++|++++.+|+.+|..
T Consensus 86 ~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~ 127 (193)
T 2rhm_A 86 FRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIA 127 (193)
T ss_dssp CCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcC
Confidence 732211111 111 1 8999999999998853
No 34
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.29 E-value=1e-11 Score=84.71 Aligned_cols=33 Identities=33% Similarity=0.461 Sum_probs=29.4
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhc
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNS 34 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~ 34 (153)
++||||||+++.|++ +|++++++|++++.....
T Consensus 12 ~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~ 44 (218)
T 1vht_A 12 GIGSGKSTVANAFAD-LGINVIDADIIARQVVEP 44 (218)
T ss_dssp CTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTST
T ss_pred CCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcC
Confidence 689999999999988 999999999999886543
No 35
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.29 E-value=1.1e-11 Score=82.52 Aligned_cols=98 Identities=20% Similarity=0.331 Sum_probs=57.6
Q ss_pred CCCCChHHHHHHHHHH-hCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCC---CHHHHHHHHHHHHhhhCCCCCcEe
Q psy11030 1 GPGSGKGTQAEKIVQK-YGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLV---STDVVMELLGEKVLKELPNSKGYL 76 (153)
Q Consensus 1 ppGsGKst~a~~L~~~-~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~i 76 (153)
||||||||+|+.|++. +|++++++|+++++... ....+. .+.. ..+ +.+.....+...+. ...++|
T Consensus 18 ~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~~~-~~~~~~----~~~~-~~~~r~~~~~~~~~l~~~~~----~~g~~v 87 (184)
T 1y63_A 18 TPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHF-YTEYDT----ELDT-HIIEEKDEDRLLDFMEPIMV----SRGNHV 87 (184)
T ss_dssp STTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTC-SCC----------C-CCCCHHHHHHHHHHHHHHHT----SSSEEE
T ss_pred CCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHhhh-hhhHHH----Hhhh-cccCCCCHHHHHHHHHHHHh----ccCCEE
Confidence 6999999999999999 79999999999988411 111111 1111 112 22222233333221 245788
Q ss_pred ecCCccchhhhhhhhhh---hhhHHHHHHHHhhcC
Q psy11030 77 IDGYPREKAQGEQFERE---DVVMELLGEKVLKEL 108 (153)
Q Consensus 77 ldg~p~~~~q~~~~~~~---~~~~~~l~~Rl~~R~ 108 (153)
+|+.............. +||.+++.+|+..|.
T Consensus 88 i~~~~~~~~~~~~~~~vi~l~~~~e~~~~Rl~~R~ 122 (184)
T 1y63_A 88 VDYHSSELFPERWFHMVVVLHTSTEVLFERLTKRQ 122 (184)
T ss_dssp EECSCCTTSCGGGCSEEEEEECCHHHHHHHHHHTT
T ss_pred EeCchHhhhhhccCCEEEEEECCHHHHHHHHHhCC
Confidence 88764322111111111 999999999999883
No 36
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.28 E-value=1.2e-11 Score=81.02 Aligned_cols=32 Identities=25% Similarity=0.279 Sum_probs=29.9
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEV 32 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~ 32 (153)
+|||||||+|+.|++++|++++++|+++++..
T Consensus 15 ~~GsGKSTva~~La~~lg~~~id~D~~~~~~~ 46 (168)
T 1zuh_A 15 FMGSGKSSLAQELGLALKLEVLDTDMIISERV 46 (168)
T ss_dssp CTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEChHHHHHHh
Confidence 69999999999999999999999999998754
No 37
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.24 E-value=1.6e-11 Score=81.61 Aligned_cols=32 Identities=9% Similarity=0.114 Sum_probs=29.7
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEV 32 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~ 32 (153)
||||||||+|+.|++++|++++++|+++++..
T Consensus 13 ~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~ 44 (185)
T 3trf_A 13 LMGAGKTSVGSQLAKLTKRILYDSDKEIEKRT 44 (185)
T ss_dssp STTSSHHHHHHHHHHHHCCCEEEHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEChHHHHHHc
Confidence 69999999999999999999999999988754
No 38
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.24 E-value=2.6e-11 Score=81.84 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=29.1
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVN 33 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~ 33 (153)
|+||||||+++.|++ +|++++++|+++++.+.
T Consensus 9 ~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~ 40 (204)
T 2if2_A 9 NIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYR 40 (204)
T ss_dssp CTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGS
T ss_pred CCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhc
Confidence 689999999999999 99999999999887553
No 39
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.22 E-value=1.3e-10 Score=78.37 Aligned_cols=98 Identities=16% Similarity=0.129 Sum_probs=56.0
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHH---HHHHHHHhhhCCCCCcEee
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVM---ELLGEKVLKELPNSKGYLI 77 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~il 77 (153)
||||||||+++.|+..+|..+++.+++...... .....|....+.... ..+...+......+..+|+
T Consensus 37 ~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~~----------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~vii 106 (200)
T 4eun_A 37 VSGSGKTTIAHGVADETGLEFAEADAFHSPENI----------ATMQRGIPLTDEDRWPWLRSLAEWMDARADAGVSTII 106 (200)
T ss_dssp CTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHHH----------HHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCCHHHHHHHHHHhhCCeEEcccccccHHHH----------HHHhcCCCCCCcccccHHHHHHHHHHHHHhcCCCEEE
Confidence 799999999999999999999998876432110 001112222221111 1112222222123457788
Q ss_pred cCCccchhhhhhhhh---------hhhhHHHHHHHHhhcC
Q psy11030 78 DGYPREKAQGEQFER---------EDVVMELLGEKVLKEL 108 (153)
Q Consensus 78 dg~p~~~~q~~~~~~---------~~~~~~~l~~Rl~~R~ 108 (153)
|.........+.+.. .+||.+++.+|+.+|.
T Consensus 107 d~~~~~~~~~~~l~~~~~~~~vv~l~~~~e~l~~Rl~~R~ 146 (200)
T 4eun_A 107 TCSALKRTYRDVLREGPPSVDFLHLDGPAEVIKGRMSKRE 146 (200)
T ss_dssp EECCCCHHHHHHHTTSSSCCEEEEEECCHHHHHHHHTTCS
T ss_pred EchhhhHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHhcc
Confidence 764333333333332 1999999999999885
No 40
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.22 E-value=5.7e-11 Score=81.86 Aligned_cols=117 Identities=25% Similarity=0.346 Sum_probs=65.1
Q ss_pred CCCCChHHHHHHHHHHhC--CceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHH-HHHHhh-------hCC
Q psy11030 1 GPGSGKGTQAEKIVQKYG--YTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL-GEKVLK-------ELP 70 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~--~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l-~~~~~~-------~~~ 70 (153)
||||||||+++.|++.++ +.++.+. ...+++.|..+.+++..+.........-++ ...... ...
T Consensus 34 ~~GsGKsT~~~~l~~~l~~~~~~~~~~------~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~~~~~~i~~~l~ 107 (229)
T 4eaq_A 34 PEGSGKTTVINEVYHRLVKDYDVIMTR------EPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVIPALK 107 (229)
T ss_dssp CTTSCHHHHHHHHHHHHTTTSCEEEEC------TTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcCCCceeec------CCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999996 4444432 123456677777777666543333222221 112111 111
Q ss_pred CCCcEeecCCccchhhhhhhhhhhhhHHHHHHHHhhcCCCCcceeecCCCCCchHHH--H---HHHHhCCCCeEEEeecC
Q psy11030 71 NSKGYLIDGYPREKAQGEQFEREDVVMELLGEKVLKELPNSKGYLIDGYPREKAQGE--Q---FEREINSPTGIVYFEVP 145 (153)
Q Consensus 71 ~~~~~ildg~p~~~~q~~~~~~~~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~--~---~~~~~~~~~~vi~l~~~ 145 (153)
.+..+|+|.+.- ++..| -|+|+...+.. . +......||+||+|++|
T Consensus 108 ~g~~Vi~DRy~~---------------------------s~~ay--qg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~ 158 (229)
T 4eaq_A 108 EGKVVLCDRYID---------------------------SSLAY--QGYARGIGVEEVRALNEFAINGLYPDLTIYLNVS 158 (229)
T ss_dssp TTCEEEEECCHH---------------------------HHCCC--CCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECC
T ss_pred CCCEEEECCchh---------------------------HHHHH--HHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCC
Confidence 234556665410 00011 16766554432 2 33334689999999999
Q ss_pred cchhh-hc
Q psy11030 146 DDVMT-IL 152 (153)
Q Consensus 146 ~~~~~-~l 152 (153)
++++. |+
T Consensus 159 ~e~~~~R~ 166 (229)
T 4eaq_A 159 AEVGRERI 166 (229)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988 75
No 41
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.22 E-value=1e-10 Score=83.40 Aligned_cols=101 Identities=24% Similarity=0.268 Sum_probs=61.6
Q ss_pred CCCCChHHHHHHHHHHh-CCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhC---CCCCcEe
Q psy11030 1 GPGSGKGTQAEKIVQKY-GYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKEL---PNSKGYL 76 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~-~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~i 76 (153)
+|||||||+|+.|++++ |+.++++| .++..+...+. |.. ..+...+ .....+.+...+.... ..+.++|
T Consensus 10 ~~GsGKST~a~~L~~~~~~~~~i~~D-~~r~~~~~~~~-g~~-~~~~~~~----~~~~~~~~~~~~~~~l~~~~~g~~vi 82 (301)
T 1ltq_A 10 CPGSGKSTWAREFIAKNPGFYNINRD-DYRQSIMAHEE-RDE-YKYTKKK----EGIVTGMQFDTAKSILYGGDSVKGVI 82 (301)
T ss_dssp CTTSSHHHHHHHHHHHSTTEEEECHH-HHHHHHTTSCC-CC----CCHHH----HHHHHHHHHHHHHHHTTSCTTCCEEE
T ss_pred CCCCCHHHHHHHHHHhCCCcEEeccc-HHHHHhccCCc-ccc-cccchhh----hhHHHHHHHHHHHHHHhhccCCCEEE
Confidence 69999999999999985 89999998 45554432111 110 0000000 1112223333344433 4567899
Q ss_pred ecCCccchhhhhhhhh---------h----hhhHHHHHHHHhhcC
Q psy11030 77 IDGYPREKAQGEQFER---------E----DVVMELLGEKVLKEL 108 (153)
Q Consensus 77 ldg~p~~~~q~~~~~~---------~----~~~~~~l~~Rl~~R~ 108 (153)
+|+++....+...+.. . ++|.+++.+|+.+|.
T Consensus 83 ~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~ 127 (301)
T 1ltq_A 83 ISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRG 127 (301)
T ss_dssp ECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCG
T ss_pred EeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhcc
Confidence 9998877554433321 1 889999999999885
No 42
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.21 E-value=3.9e-11 Score=79.98 Aligned_cols=101 Identities=15% Similarity=0.114 Sum_probs=60.4
Q ss_pred CCCCChHHHHHHHHHHhC-----CceechhHHHHHHHh-cCCcchhHHHHHHHcCCCCCH--HHHHHHHHHHHhhhC--C
Q psy11030 1 GPGSGKGTQAEKIVQKYG-----YTHISTGDLLREEVN-SGSARGADLSKVMKDGGLVST--DVVMELLGEKVLKEL--P 70 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~-----~~~i~~~~l~~~~~~-~~~~~g~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~--~ 70 (153)
||||||||+|+.|+++++ +.+++.++++++.+. .....+. .. .+...+. ..+...+...+.... .
T Consensus 9 ~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~i~~~l~~~ 83 (194)
T 1nks_A 9 IPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDR--DE---MRKLSVEKQKKLQIDAAKGIAEEARAG 83 (194)
T ss_dssp CTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSH--HH---HTTSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccch--hh---hhcCCHHHHHHHHHHHHHHHHHHhhcc
Confidence 699999999999999998 889999999987663 2221111 00 0122222 222222333333332 4
Q ss_pred CCCcEeecCCccchhh--------hhhhhh---h-----hhhHHHHHHH-Hhh
Q psy11030 71 NSKGYLIDGYPREKAQ--------GEQFER---E-----DVVMELLGEK-VLK 106 (153)
Q Consensus 71 ~~~~~ildg~p~~~~q--------~~~~~~---~-----~~~~~~l~~R-l~~ 106 (153)
.+..+|+|+++....| ...+.. . ++|++++.+| +..
T Consensus 84 ~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~~~~~~rr~~~ 136 (194)
T 1nks_A 84 GEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFLLEADPKIILSRQKRD 136 (194)
T ss_dssp CSSEEEEEECSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHHC
T ss_pred CCCEEEECCchhhccccccccCCCHHHHHhcCCCEEEEEeCCHHHHHHHHHhh
Confidence 4678999998654333 111111 1 8999988866 766
No 43
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.20 E-value=9.1e-11 Score=81.81 Aligned_cols=106 Identities=20% Similarity=0.265 Sum_probs=60.4
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHc-CCCCCHHHHHHHHHHHHhhhCCCCCcEeec-
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKD-GGLVSTDVVMELLGEKVLKELPNSKGYLID- 78 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~ild- 78 (153)
||||||||+++.|++.+|+.+++++++++.... |..+..++.. |.....+...+.+.+..... ...+|.+
T Consensus 56 ~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~-----g~~i~~i~~~~ge~~fr~~e~~~l~~l~~~~---~~~Via~G 127 (250)
T 3nwj_A 56 MMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMK-----GTSVAEIFEHFGESVFREKETEALKKLSLMY---HQVVVSTG 127 (250)
T ss_dssp STTSCHHHHHHHHHHHHTCEEEEHHHHHHHHST-----TSCHHHHHHHHCHHHHHHHHHHHHHHHHHHC---SSEEEECC
T ss_pred CCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhc-----CccHHHHHHHhCcHHHHHHHHHHHHHHHhhc---CCcEEecC
Confidence 699999999999999999999999999988551 2233443322 33323332223333322220 2344444
Q ss_pred -CCccchhhhhhhhhh-----hhhHHHHHHHHhhcCCCCcce
Q psy11030 79 -GYPREKAQGEQFERE-----DVVMELLGEKVLKELPNSKGY 114 (153)
Q Consensus 79 -g~p~~~~q~~~~~~~-----~~~~~~l~~Rl~~R~~~~~~~ 114 (153)
|.+........+... ++|.+++.+|+..+....++.
T Consensus 128 gG~v~~~~~~~~l~~~~vV~L~a~~e~l~~Rl~~~~~~~Rpl 169 (250)
T 3nwj_A 128 GGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTGSRPL 169 (250)
T ss_dssp GGGGGSHHHHHHHTTSEEEEEECCHHHHHHHHHC--------
T ss_pred CCeecCHHHHHHHhCCcEEEEECCHHHHHHHHhhcCCCCCCc
Confidence 344444444433222 899999999998643333333
No 44
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.20 E-value=6.5e-11 Score=78.60 Aligned_cols=32 Identities=25% Similarity=0.418 Sum_probs=29.8
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEV 32 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~ 32 (153)
+|||||||+|+.|++++|++++++|+++++..
T Consensus 10 ~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~ 41 (184)
T 2iyv_A 10 LPGSGKSTIGRRLAKALGVGLLDTDVAIEQRT 41 (184)
T ss_dssp STTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCEEeCchHHHHHc
Confidence 69999999999999999999999999988764
No 45
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.18 E-value=6.3e-12 Score=85.21 Aligned_cols=54 Identities=24% Similarity=0.214 Sum_probs=34.6
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDV 56 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 56 (153)
+|||||||+|+.|+++++..+++++ +++.. ..++..|..+..++..+..++...
T Consensus 18 ~~GsGKST~~~~L~~~l~~~~~~~~-~~~~~-~~~~~~g~~i~~~~~~~~~~~~~~ 71 (212)
T 2wwf_A 18 LDRSGKSTQSKLLVEYLKNNNVEVK-HLYFP-NRETGIGQIISKYLKMENSMSNET 71 (212)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEE-EEESS-CTTSHHHHHHHHHHTTSSCCCHHH
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcEE-EEecC-CCCCcHHHHHHHHHhcCCCCCHHH
Confidence 6899999999999999987777762 32211 112444555555665555555443
No 46
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.16 E-value=5.1e-11 Score=78.87 Aligned_cols=97 Identities=24% Similarity=0.280 Sum_probs=59.0
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
||||||||+++.|++.+|+.++++++++++... ....+... .......+.+...+...+.. .++|+|..
T Consensus 19 ~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-----g~~vv~~~ 87 (180)
T 3iij_A 19 TPGVGKTTLGKELASKSGLKYINVGDLAREEQL-YDGYDEEY-----DCPILDEDRVVDELDNQMRE-----GGVIVDYH 87 (180)
T ss_dssp STTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTC-EEEEETTT-----TEEEECHHHHHHHHHHHHHH-----CCEEEECS
T ss_pred CCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcch-hhhhhhhh-----cCccCChHHHHHHHHHHHhc-----CCEEEEec
Confidence 699999999999999999999999999888511 00111100 00112223233333333322 46777765
Q ss_pred ccchhhhhhhhhh---hhhHHHHHHHHhhcC
Q psy11030 81 PREKAQGEQFERE---DVVMELLGEKVLKEL 108 (153)
Q Consensus 81 p~~~~q~~~~~~~---~~~~~~l~~Rl~~R~ 108 (153)
.+......+.... +||.+++.+|+..|.
T Consensus 88 ~~~~~~~~~~~~vi~L~~~~e~l~~R~~~r~ 118 (180)
T 3iij_A 88 GCDFFPERWFHIVFVLRTDTNVLYERLETRG 118 (180)
T ss_dssp CCTTSCGGGCSEEEEEECCHHHHHHHHHHTT
T ss_pred hhhhcchhcCCEEEEEECCHHHHHHHHHHcC
Confidence 4433222211111 999999999999884
No 47
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=99.16 E-value=4.9e-11 Score=82.00 Aligned_cols=123 Identities=19% Similarity=0.258 Sum_probs=64.4
Q ss_pred CCCCChHHHHHHHHHHhCCceechhH---HHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHH-------HhhhCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGD---LLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEK-------VLKELP 70 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~---l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~ 70 (153)
|+||||||+++.|++.++..+++++. +.+. ..+++.|..+.+++..+...+.....-.+.++ +.....
T Consensus 33 ~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~re--p~~t~~g~~ir~~l~~~~~~~~~~~llf~a~R~~~~~~~i~p~l~ 110 (227)
T 3v9p_A 33 IDGAGKTTHLQWFCDRLQERLGPAGRHVVVTRE--PGGTRLGETLREILLNQPMDLETEALLMFAGRREHLALVIEPALA 110 (227)
T ss_dssp CC---CHHHHHHHHHHHHHHHGGGTCCEEEEES--SSSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhhccccceeeeeecC--CCCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999998433222110 1111 23566777777777776544433222222222 222223
Q ss_pred CCCcEeecCCccchhhhhhhhhhhhhHHHHHHHHhhcCCCCcceeecCCCCCchHHHHHHH---HhCCCCeEEEeecCcc
Q psy11030 71 NSKGYLIDGYPREKAQGEQFEREDVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQFER---EINSPTGIVYFEVPDD 147 (153)
Q Consensus 71 ~~~~~ildg~p~~~~q~~~~~~~~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~~~~---~~~~~~~vi~l~~~~~ 147 (153)
.+..+|.|.|.-. ....+.. .| |.+. .....++. ..+.||++|+|++|++
T Consensus 111 ~g~~VI~DRy~~S--------------~~ayq~~-~~----------gl~~--~~~~~l~~~~~~~~~PDl~I~Ldv~~e 163 (227)
T 3v9p_A 111 RGDWVVSDRFTDA--------------TFAYQGG-GR----------GLPR--DKLEALERWVQGGFQPDLTVLFDVPPQ 163 (227)
T ss_dssp TTCEEEEECCHHH--------------HHHHHTT-TT----------CCCH--HHHHHHHHHHHTTCCCSEEEEEECCSS
T ss_pred cCCEEEEeccHhH--------------HHHHhhh-cc----------CCCH--HHHHHHHHHHhcCCCCCEEEEEeCCHH
Confidence 4566788888321 1111100 01 2211 22233332 3478999999999999
Q ss_pred hhh-hc
Q psy11030 148 VMT-IL 152 (153)
Q Consensus 148 ~~~-~l 152 (153)
++. |+
T Consensus 164 ~~~~Ri 169 (227)
T 3v9p_A 164 IASARR 169 (227)
T ss_dssp CGGGTT
T ss_pred HHHHHH
Confidence 998 86
No 48
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.14 E-value=2.2e-10 Score=78.40 Aligned_cols=32 Identities=22% Similarity=0.458 Sum_probs=30.1
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEV 32 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~ 32 (153)
||||||||+++.|++.+|++++++|++++...
T Consensus 13 ~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~ 44 (227)
T 1cke_A 13 PSGAGKGTLCKAMAEALQWHLLDSGAIYRVLA 44 (227)
T ss_dssp CTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhCCCcccCcceeehhh
Confidence 79999999999999999999999999999764
No 49
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.14 E-value=2.8e-10 Score=74.64 Aligned_cols=31 Identities=19% Similarity=0.439 Sum_probs=29.1
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREE 31 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~ 31 (153)
+|||||||+|+.|++.+|++++++|+++++.
T Consensus 10 ~~GsGKsT~a~~La~~lg~~~id~d~~~~~~ 40 (173)
T 1e6c_A 10 ARGCGMTTVGRELARALGYEFVDTDIFMQHT 40 (173)
T ss_dssp CTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhCCcEEcccHHHHHH
Confidence 6899999999999999999999999998875
No 50
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.14 E-value=4.9e-11 Score=79.39 Aligned_cols=101 Identities=12% Similarity=0.171 Sum_probs=58.5
Q ss_pred CCCCChHHHHHHHHHHhC-----CceechhHHHHHHHhcCCcchhHHHHHHHcCCCCC--HHHHHHHHHHHHhhhCCCCC
Q psy11030 1 GPGSGKGTQAEKIVQKYG-----YTHISTGDLLREEVNSGSARGADLSKVMKDGGLVS--TDVVMELLGEKVLKELPNSK 73 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~-----~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~ 73 (153)
||||||||+|+.|+++++ +.++++++++++........ ....+. ....+ ...+...+.+.+... ....
T Consensus 11 ~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~i~~~-~~~~ 85 (192)
T 1kht_A 11 VPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLV-SDRDQM---RKMDPETQKRIQKMAGRKIAEM-AKES 85 (192)
T ss_dssp CTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSC-SSGGGG---SSCCHHHHHHHHHHHHHHHHHH-HTTS
T ss_pred CCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCC-CCHHHH---hcCCHHHHHHHHHHHHHHHHhh-ccCC
Confidence 699999999999999998 99999999998865431100 000000 01111 111222222333332 2346
Q ss_pred cEeecCCccchhhh--------hhhhh-----h---hhhHHHHHH-HHhh
Q psy11030 74 GYLIDGYPREKAQG--------EQFER-----E---DVVMELLGE-KVLK 106 (153)
Q Consensus 74 ~~ildg~p~~~~q~--------~~~~~-----~---~~~~~~l~~-Rl~~ 106 (153)
.+|+||++....+. ..+.. . ++|++++.+ |+..
T Consensus 86 ~viid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~rRl~~ 135 (192)
T 1kht_A 86 PVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVETTGDEILMRRMSD 135 (192)
T ss_dssp CEEEECCSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHTS
T ss_pred eEEEccceeccccccccccCcHHHHhccCCCEEEEEeCCHHHHHHHHhhh
Confidence 89999976421111 11111 1 899999996 9987
No 51
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.14 E-value=7.8e-10 Score=72.76 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=25.9
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLL 28 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~ 28 (153)
||||||||+++.|+..+|..+++.+++.
T Consensus 16 ~~GsGKSTl~~~l~~~~g~~~i~~d~~~ 43 (175)
T 1knq_A 16 VSGSGKSAVASEVAHQLHAAFLDGDFLH 43 (175)
T ss_dssp STTSCHHHHHHHHHHHHTCEEEEGGGGC
T ss_pred CCCCCHHHHHHHHHHhhCcEEEeCcccc
Confidence 6999999999999999999999998874
No 52
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.12 E-value=1e-09 Score=73.94 Aligned_cols=32 Identities=28% Similarity=0.429 Sum_probs=29.9
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEV 32 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~ 32 (153)
+|||||||+|+.|++.+|+++++.|++.+...
T Consensus 10 ~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~ 41 (208)
T 3ake_A 10 PSASGKSSVARRVAAALGVPYLSSGLLYRAAA 41 (208)
T ss_dssp STTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCCceeccchHHHhhh
Confidence 68999999999999999999999999998764
No 53
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.12 E-value=3.5e-10 Score=74.00 Aligned_cols=30 Identities=20% Similarity=0.122 Sum_probs=27.5
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLRE 30 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~ 30 (153)
||||||||+|+.|++++++++++.+.+...
T Consensus 9 ~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~ 38 (173)
T 3kb2_A 9 PDCCFKSTVAAKLSKELKYPIIKGSSFELA 38 (173)
T ss_dssp SSSSSHHHHHHHHHHHHCCCEEECCCHHHH
T ss_pred CCCCCHHHHHHHHHHHhCCeeecCcccccc
Confidence 799999999999999999999999877655
No 54
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.12 E-value=8.1e-11 Score=77.61 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=29.2
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREE 31 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~ 31 (153)
||||||||+|+.|++++|+++++.|++++..
T Consensus 12 ~~GsGKsTla~~La~~l~~~~~d~d~~~~~~ 42 (175)
T 1via_A 12 FMGSGKSTLARALAKDLDLVFLDSDFLIEQK 42 (175)
T ss_dssp CTTSCHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCEEcccHHHHHH
Confidence 7999999999999999999999999998874
No 55
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.11 E-value=4.2e-10 Score=75.57 Aligned_cols=31 Identities=29% Similarity=0.330 Sum_probs=28.7
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEV 32 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~ 32 (153)
+|||||||+|+.|++. |++++++|++++...
T Consensus 16 ~~GsGKST~~~~La~~-g~~~id~d~~~~~~~ 46 (203)
T 1uf9_A 16 NIGSGKSTVAALLRSW-GYPVLDLDALAARAR 46 (203)
T ss_dssp CTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHC-CCEEEcccHHHHHhc
Confidence 6899999999999998 999999999998765
No 56
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=99.09 E-value=1e-09 Score=74.29 Aligned_cols=117 Identities=23% Similarity=0.342 Sum_probs=64.3
Q ss_pred CCCCChHHHHHHHHHHh--CCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHH--------HHHhhhCC
Q psy11030 1 GPGSGKGTQAEKIVQKY--GYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLG--------EKVLKELP 70 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~--~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~--------~~~~~~~~ 70 (153)
+.||||||+++.|++.+ |+.++.+.. ..+++.|..+.+++..+...+.....-++. +.+.....
T Consensus 10 ~dGsGKsTq~~~L~~~L~~~~~v~~~~e------P~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~~~i~p~l~ 83 (205)
T 4hlc_A 10 PEGSGKTTVINEVYHRLVKDYDVIMTRE------PGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVIPALK 83 (205)
T ss_dssp CTTSCHHHHHHHHHHHHTTTSCEEEEES------STTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHCCCCEEEeeC------CCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999988 455443211 124556666666666555555443322221 12222223
Q ss_pred CCCcEeecCCccchhhhhhhhhhhhhHHHHHHHHhhcCCCCcceeecCCCCC--chHHHHHH---HHhCCCCeEEEeecC
Q psy11030 71 NSKGYLIDGYPREKAQGEQFEREDVVMELLGEKVLKELPNSKGYLIDGYPRE--KAQGEQFE---REINSPTGIVYFEVP 145 (153)
Q Consensus 71 ~~~~~ildg~p~~~~q~~~~~~~~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~--~~~~~~~~---~~~~~~~~vi~l~~~ 145 (153)
.+..+|.|.|.-. -+... |+.+. ......+. .....||++|+||+|
T Consensus 84 ~g~~Vi~DRy~~S-------------------~~ayq----------~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~ 134 (205)
T 4hlc_A 84 EGKVVLCDRYIDS-------------------SLAYQ----------GYARGIGVEEVRALNEFAINGLYPDLTIYLNVS 134 (205)
T ss_dssp TTCEEEEECCHHH-------------------HHHHT----------TTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECC
T ss_pred cCCEEEecCcccc-------------------hHHHH----------hccccchHHHHHHHHHHHhcCCCCCEEeeeCCC
Confidence 4556677877211 01101 22222 12222222 234579999999999
Q ss_pred cchhh-hc
Q psy11030 146 DDVMT-IL 152 (153)
Q Consensus 146 ~~~~~-~l 152 (153)
++++. |+
T Consensus 135 ~e~~~~Ri 142 (205)
T 4hlc_A 135 AEVGRERI 142 (205)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988 75
No 57
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=99.07 E-value=2.5e-10 Score=77.83 Aligned_cols=119 Identities=15% Similarity=0.215 Sum_probs=65.5
Q ss_pred CCCCChHHHHHHHHHHhC---CceechhHHHHHHHhcCCcchhHHHHHHHcCC--CCCHHHHHHH-HHH-------HHhh
Q psy11030 1 GPGSGKGTQAEKIVQKYG---YTHISTGDLLREEVNSGSARGADLSKVMKDGG--LVSTDVVMEL-LGE-------KVLK 67 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~---~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~-l~~-------~~~~ 67 (153)
|+||||||+++.|++.++ +.++.+.. ..+++.|..+.+++..+. ........-+ +.+ .+..
T Consensus 14 ~~gsGKsT~~~~l~~~l~~~~~~v~~~~~------p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~~~~~~~i~p 87 (213)
T 4edh_A 14 PEGAGKSTNRDYLAERLRERGIEVQLTRE------PGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLAGVIRP 87 (213)
T ss_dssp STTSSHHHHHHHHHHHHHTTTCCEEEEES------SCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccccC------CCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999884 45544321 235667777777776653 2332221111 111 1222
Q ss_pred hCCCCCcEeecCCccchhhhhhhhhhhhhHHHHHHHHhhcCCCCcceeecCCCCCchHHHHHH---HHhCCCCeEEEeec
Q psy11030 68 ELPNSKGYLIDGYPREKAQGEQFEREDVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQFE---REINSPTGIVYFEV 144 (153)
Q Consensus 68 ~~~~~~~~ildg~p~~~~q~~~~~~~~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~~~---~~~~~~~~vi~l~~ 144 (153)
....+..+|.|.|.-. ....+.. .| |.+ ......+. ...+.||++|+|++
T Consensus 88 ~l~~g~~Vi~DRy~~S--------------~~ayq~~-~~----------g~~--~~~~~~l~~~~~~~~~PDlvi~Ld~ 140 (213)
T 4edh_A 88 ALARGAVVLCDRFTDA--------------TYAYQGG-GR----------GLP--EARIAALESFVQGDLRPDLTLVFDL 140 (213)
T ss_dssp HHHTTCEEEEESCHHH--------------HHHHTTT-TT----------CCC--HHHHHHHHHHHHTTCCCSEEEEEEC
T ss_pred HHHCCCEEEECccHhH--------------HHHHhhh-cc----------CCC--HHHHHHHHHHHhcCCCCCEEEEEeC
Confidence 2234566777887211 0011000 01 221 12223333 23478999999999
Q ss_pred Ccchhh-hc
Q psy11030 145 PDDVMT-IL 152 (153)
Q Consensus 145 ~~~~~~-~l 152 (153)
|++++. |+
T Consensus 141 ~~e~~~~Ri 149 (213)
T 4edh_A 141 PVEIGLARA 149 (213)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 999998 76
No 58
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.06 E-value=4.4e-10 Score=75.61 Aligned_cols=48 Identities=17% Similarity=0.061 Sum_probs=31.9
Q ss_pred CCCCChHHHHHHHHHHh-CCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCC
Q psy11030 1 GPGSGKGTQAEKIVQKY-GYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVS 53 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~-~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 53 (153)
||||||||+|+.|++++ |+.+++++... ..+..|..+.+++..+...+
T Consensus 12 ~~GsGKsT~~~~L~~~l~g~~~~~~~~~~-----~~~~~g~~i~~~~~~~~~~~ 60 (204)
T 2v54_A 12 LDKSGKTTQCMNIMESIPANTIKYLNFPQ-----RSTVTGKMIDDYLTRKKTYN 60 (204)
T ss_dssp CTTSSHHHHHHHHHHTSCGGGEEEEESSC-----TTSHHHHHHHHHHTSSCCCC
T ss_pred CCCCCHHHHHHHHHHHHCCCceEEEecCC-----CCCcHHHHHHHHHhcCCCCC
Confidence 68999999999999998 58777753211 02334556666665544333
No 59
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.04 E-value=1.6e-09 Score=75.88 Aligned_cols=92 Identities=11% Similarity=0.090 Sum_probs=54.1
Q ss_pred CCCCChHHHHHHHHHH---hCCcee--chhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcE
Q psy11030 1 GPGSGKGTQAEKIVQK---YGYTHI--STGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGY 75 (153)
Q Consensus 1 ppGsGKst~a~~L~~~---~~~~~i--~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 75 (153)
+|||||||+|+.|++. +|+.++ +.|.+... +..-...+.. .........+...... ..+
T Consensus 12 ~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~-l~~~~~~~e~--------------~~~~~~~~~i~~~l~~-~~v 75 (260)
T 3a4m_A 12 LPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRES-FPVWKEKYEE--------------FIKKSTYRLIDSALKN-YWV 75 (260)
T ss_dssp CTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTT-SSSCCGGGHH--------------HHHHHHHHHHHHHHTT-SEE
T ss_pred CCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHH-HhhhhHHHHH--------------HHHHHHHHHHHHHhhC-CEE
Confidence 6999999999999998 688777 76654322 2110111111 1111112222222233 789
Q ss_pred eecCCccchhhhhhhhh---------h----hhhHHHHHHHHhhcC
Q psy11030 76 LIDGYPREKAQGEQFER---------E----DVVMELLGEKVLKEL 108 (153)
Q Consensus 76 ildg~p~~~~q~~~~~~---------~----~~~~~~l~~Rl~~R~ 108 (153)
|+|+.+........+.. . +||.+++.+|+..|.
T Consensus 76 IiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~ 121 (260)
T 3a4m_A 76 IVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERG 121 (260)
T ss_dssp EECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTT
T ss_pred EEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCC
Confidence 99987655444332221 1 899999999999874
No 60
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.03 E-value=4.9e-10 Score=75.71 Aligned_cols=20 Identities=30% Similarity=0.257 Sum_probs=18.3
Q ss_pred CCCCChHHHHHHHHHHhCCc
Q psy11030 1 GPGSGKGTQAEKIVQKYGYT 20 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~ 20 (153)
+|||||||+|+.|+++++..
T Consensus 12 ~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 12 IDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CTTSSHHHHHHHHHHHHTTT
T ss_pred CCCCCHHHHHHHHHHHHhhc
Confidence 69999999999999999864
No 61
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.03 E-value=3.1e-10 Score=79.18 Aligned_cols=100 Identities=19% Similarity=0.166 Sum_probs=55.1
Q ss_pred CCCCChHHHHHHHHHHhC--CceechhHHHHHHHhc----CCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCc
Q psy11030 1 GPGSGKGTQAEKIVQKYG--YTHISTGDLLREEVNS----GSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKG 74 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~--~~~i~~~~l~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 74 (153)
||||||||+|+.|++.++ +.+++.|.+ +..... ....|..+..+... .....+...+......+.+
T Consensus 40 ~~GsGKSTla~~L~~~l~~~~~~~~~D~~-r~~~~~~~~i~~~~g~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~ 111 (253)
T 2p5t_B 40 QSGAGKTTIHRIKQKEFQGNIVIIDGDSF-RSQHPHYLELQQEYGKDSVEYTKD-------FAGKMVESLVTKLSSLGYN 111 (253)
T ss_dssp CGGGTTHHHHHHHHHHTTTCCEEECGGGG-GTTSTTHHHHHTTCSSTTHHHHHH-------HHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHhcCCCcEEEecHHH-HHhchhHHHHHHHcCchHHHHhhH-------HHHHHHHHHHHHHHhcCCC
Confidence 699999999999999997 455666544 331110 01112221121110 0111112222222123468
Q ss_pred EeecCCccchhhhhh----hhhh---------hhhHHHHHHHHhhcC
Q psy11030 75 YLIDGYPREKAQGEQ----FERE---------DVVMELLGEKVLKEL 108 (153)
Q Consensus 75 ~ildg~p~~~~q~~~----~~~~---------~~~~~~l~~Rl~~R~ 108 (153)
+|+|+++....+... +... .+|.+++.+|+..|.
T Consensus 112 vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R~ 158 (253)
T 2p5t_B 112 LLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLIRY 158 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHHH
Confidence 999999887654322 1111 779999999998874
No 62
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.01 E-value=1.7e-10 Score=80.46 Aligned_cols=30 Identities=37% Similarity=0.500 Sum_probs=27.1
Q ss_pred CCCCChHHHHHHHHHHhCCc----------eechhHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYT----------HISTGDLLRE 30 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~----------~i~~~~l~~~ 30 (153)
||||||||+|+.|++.+|++ ++++|++++.
T Consensus 30 ~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~ 69 (252)
T 1uj2_A 30 GTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRV 69 (252)
T ss_dssp STTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCC
T ss_pred CCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccc
Confidence 68999999999999999988 7999998763
No 63
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.00 E-value=9.1e-10 Score=74.96 Aligned_cols=31 Identities=23% Similarity=0.394 Sum_probs=29.4
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREE 31 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~ 31 (153)
+|||||||+|+.|++.+|++++++|++++..
T Consensus 11 ~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~ 41 (219)
T 2h92_A 11 PAAAGKSTIAKRVASELSMIYVDTGAMYRAL 41 (219)
T ss_dssp CTTSSHHHHHHHHHHHTTCEEEEHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCCceecCChHHHHH
Confidence 6899999999999999999999999999875
No 64
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.99 E-value=6.2e-10 Score=73.01 Aligned_cols=32 Identities=16% Similarity=0.296 Sum_probs=29.2
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEV 32 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~ 32 (153)
||||||||+++.|+..+++.+++.|+++++..
T Consensus 12 ~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~ 43 (173)
T 1kag_A 12 PMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT 43 (173)
T ss_dssp CTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhCCCEEeccHHHHHHh
Confidence 79999999999999999999999999887643
No 65
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=98.98 E-value=1e-10 Score=80.90 Aligned_cols=121 Identities=15% Similarity=0.102 Sum_probs=63.5
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcC---CCCCHHHHHHH--------HHHHHhhhC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDG---GLVSTDVVMEL--------LGEKVLKEL 69 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~--------l~~~~~~~~ 69 (153)
|+||||||+++.|++.++...+++..+.+. ..+++.|..+.+++..+ .........-+ +.+.+....
T Consensus 35 ~~GsGKsT~~~~l~~~l~~~~~~~~~~~re--p~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~~~~~~I~paL 112 (236)
T 3lv8_A 35 LEGAGKSTAIQVVVETLQQNGIDHITRTRE--PGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQLVENVIKPAL 112 (236)
T ss_dssp STTSCHHHHHHHHHHHHHHTTCCCEEEEES--SCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCeeeeecC--CCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999985433331111121 23566777777776422 22332211111 112222222
Q ss_pred CCCCcEeecCCccchhhhhhhhhhhhhHHHHHHHHhhcCCCCcceeecCCCCCc--hHHHH---HHHHhCCCCeEEEeec
Q psy11030 70 PNSKGYLIDGYPREKAQGEQFEREDVVMELLGEKVLKELPNSKGYLIDGYPREK--AQGEQ---FEREINSPTGIVYFEV 144 (153)
Q Consensus 70 ~~~~~~ildg~p~~~~q~~~~~~~~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~--~~~~~---~~~~~~~~~~vi~l~~ 144 (153)
..+..+|.|.|.-. ....+ |+.+.. ..... +....+.||+||+|++
T Consensus 113 ~~g~~VI~DRy~~S--------------~~AYq---------------~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv 163 (236)
T 3lv8_A 113 ARGEWVVGDRHDMS--------------SQAYQ---------------GGGRQIAPSTMQSLKQTALGDFKPDLTLYLDI 163 (236)
T ss_dssp HTTCEEEEESCHHH--------------HHHHT---------------TTTTCCCHHHHHHHHHHHHTTCCCSEEEEEEC
T ss_pred HcCCEEEEeeecch--------------HHhhh---------------hhccCCCHHHHHHHHHHHhcCCCCCEEEEEeC
Confidence 34566777877211 01110 222211 12222 2223468999999999
Q ss_pred Ccchhh-hc
Q psy11030 145 PDDVMT-IL 152 (153)
Q Consensus 145 ~~~~~~-~l 152 (153)
|++++. |+
T Consensus 164 ~~e~~~~Ri 172 (236)
T 3lv8_A 164 DPKLGLERA 172 (236)
T ss_dssp CHHHHHHC-
T ss_pred CHHHHHHHH
Confidence 999998 76
No 66
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.98 E-value=2.7e-10 Score=77.18 Aligned_cols=53 Identities=23% Similarity=0.179 Sum_probs=30.7
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTD 55 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 55 (153)
+|||||||+|+.|+++++..+++++.+ ++. ..++..|..+..++..+...+..
T Consensus 17 ~~GsGKsT~~~~L~~~l~~~~~~v~~~-~~~-~~~~~~~~~i~~~~~~~~~~~~~ 69 (215)
T 1nn5_A 17 VDRAGKSTQSRKLVEALCAAGHRAELL-RFP-ERSTEIGKLLSSYLQKKSDVEDH 69 (215)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEEEE-ESS-CTTSHHHHHHHHHHTTSSCCCHH
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEe-eCC-CCCCcHHHHHHHHHhcCCCCCHH
Confidence 689999999999999987655554211 110 00233444555555544444443
No 67
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.96 E-value=1.3e-09 Score=77.51 Aligned_cols=101 Identities=17% Similarity=0.124 Sum_probs=54.8
Q ss_pred CCCCChHHHHHHHHHHh--CCceechhHHHHHHHhcCCcchhHHHHHHHcCCCC---CHHHHHHHHHHHHhhhCCCCCcE
Q psy11030 1 GPGSGKGTQAEKIVQKY--GYTHISTGDLLREEVNSGSARGADLSKVMKDGGLV---STDVVMELLGEKVLKELPNSKGY 75 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~--~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~ 75 (153)
||||||||+|+.|++++ ++.++|.|.+ +..... ...+...+ +... .......+....+......+..+
T Consensus 41 ~sGsGKSTla~~L~~~~~~~~~~Is~D~~-R~~~~~----~~~~~~~~--~~~a~~~~~~~~~~~~~~~v~~~l~~g~~v 113 (287)
T 1gvn_B 41 QPGSGKTSLRSAIFEETQGNVIVIDNDTF-KQQHPN----FDELVKLY--EKDVVKHVTPYSNRMTEAIISRLSDQGYNL 113 (287)
T ss_dssp CTTSCTHHHHHHHHHHTTTCCEEECTHHH-HTTSTT----HHHHHHHH--GGGCHHHHHHHHHHHHHHHHHHHHHHTCCE
T ss_pred CCCCCHHHHHHHHHHHhCCCeEEEechHh-HHhchh----hHHHHHHc--cchhhhhhhHHHHHHHHHHHHHHHhcCCeE
Confidence 79999999999999998 7888987554 321110 00000000 0000 01111111222222222335789
Q ss_pred eecCCccchhhhhh----hhhh---------hhhHHHH----HHHHhhcC
Q psy11030 76 LIDGYPREKAQGEQ----FERE---------DVVMELL----GEKVLKEL 108 (153)
Q Consensus 76 ildg~p~~~~q~~~----~~~~---------~~~~~~l----~~Rl~~R~ 108 (153)
|+|+.+....+... +... .+|++++ .+|+..|.
T Consensus 114 Ild~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R~ 163 (287)
T 1gvn_B 114 VIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMY 163 (287)
T ss_dssp EECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHHH
Confidence 99998877553322 1111 7899998 88887653
No 68
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=98.95 E-value=2.3e-08 Score=68.95 Aligned_cols=32 Identities=34% Similarity=0.592 Sum_probs=29.8
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEV 32 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~ 32 (153)
+|||||||+++.|++++|+++++.|++++...
T Consensus 24 ~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~ 55 (236)
T 1q3t_A 24 PASSGKSTVAKIIAKDFGFTYLDTGAMYRAAT 55 (236)
T ss_dssp SSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCceecCCCeeEcce
Confidence 68999999999999999999999999998753
No 69
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=98.93 E-value=8.6e-09 Score=69.28 Aligned_cols=129 Identities=11% Similarity=0.066 Sum_probs=73.5
Q ss_pred CCCCChHHHHHHHHHHhC---CceechhHHHHHHHhc--CCcchh-------------HHHHH----HHcCCCCCHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYG---YTHISTGDLLREEVNS--GSARGA-------------DLSKV----MKDGGLVSTDVVM 58 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~---~~~i~~~~l~~~~~~~--~~~~g~-------------~~~~~----~~~~~~~~~~~~~ 58 (153)
.|||||+|+|+.+.+.+| ++++++++.+++.... +-+... .++.. ...+.. .++
T Consensus 19 k~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R~~d~~----~~~ 94 (202)
T 3ch4_B 19 KRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADPG----FFC 94 (202)
T ss_dssp CTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHHHHHHCTT----TTH
T ss_pred CCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHHHhcCch----HHH
Confidence 489999999999988884 7889999999964432 111111 11100 000000 011
Q ss_pred HHHHHHHhhhCCCCCcEeecCCccchhhhhhhhhh----------hhhHHHHHHHHhhcCCCCcceeecCCCCCchHHHH
Q psy11030 59 ELLGEKVLKELPNSKGYLIDGYPREKAQGEQFERE----------DVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQ 128 (153)
Q Consensus 59 ~~l~~~~~~~~~~~~~~ildg~p~~~~q~~~~~~~----------~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~ 128 (153)
++ +... .....|||||. |...+.++|... .++++++.+|...+ +..++..+-+.
T Consensus 95 ~~----~~~~-~~~~~vII~dv-R~~~Ev~~fr~~~g~~~~iirI~as~~~R~~Rg~~~----------~~~~Dd~esE~ 158 (202)
T 3ch4_B 95 RK----IVEG-ISQPIWLVSDT-RRVSDIQWFREAYGAVTQTVRVVALEQSRQQRGWVF----------TPGVDDAESEC 158 (202)
T ss_dssp HH----HSBT-CCCSEEEECCC-CSHHHHHHHHHHHGGGEEEEEEEECHHHHHHTTCCC----------CTTTTTSHHHH
T ss_pred HH----HHHh-cCCCcEEEeCC-CCHHHHHHHHHhCCCcEEEEEEECCHHHHHHHhhhc----------ccccccccccc
Confidence 11 1111 22357999998 555555555432 88999999994211 11122222222
Q ss_pred -HHHHhCCCCeEEEeecCcchhh
Q psy11030 129 -FEREINSPTGIVYFEVPDDVMT 150 (153)
Q Consensus 129 -~~~~~~~~~~vi~l~~~~~~~~ 150 (153)
+... ..+|++|.||++.+++.
T Consensus 159 gL~~~-~~~D~vI~Ndgt~eel~ 180 (202)
T 3ch4_B 159 GLDNF-GDFDWVIENHGVEQRLE 180 (202)
T ss_dssp TTTTC-CCCSEEEEECSCHHHHH
T ss_pred CCCCC-CcCCEEEEeCCCHHHHH
Confidence 2222 47899999999988765
No 70
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.93 E-value=5.6e-10 Score=83.17 Aligned_cols=81 Identities=16% Similarity=0.159 Sum_probs=56.1
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHHHHHHHHhhhCCCCCcEeecCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKGYLIDGY 80 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ildg~ 80 (153)
+|||||||+|+.|++.+++.+++.|++- ... .+...+...+ ..+..+|+|+.
T Consensus 266 ~pGSGKSTla~~L~~~~~~~~i~~D~~~------------~~~------------~~~~~~~~~l----~~g~~vIiD~~ 317 (416)
T 3zvl_A 266 FPGAGKSTFIQEHLVSAGYVHVNRDTLG------------SWQ------------RCVSSCQAAL----RQGKRVVIDNT 317 (416)
T ss_dssp CTTSSHHHHHHHHTGGGTCEECCGGGSC------------SHH------------HHHHHHHHHH----HTTCCEEEESC
T ss_pred CCCCCHHHHHHHHHHhcCcEEEccchHH------------HHH------------HHHHHHHHHH----hcCCcEEEeCC
Confidence 6999999999999999999999998750 000 1122222333 23568999988
Q ss_pred ccchhhhhhhhhh-------------hhhHHHHHHHHhhcCC
Q psy11030 81 PREKAQGEQFERE-------------DVVMELLGEKVLKELP 109 (153)
Q Consensus 81 p~~~~q~~~~~~~-------------~~~~~~l~~Rl~~R~~ 109 (153)
+....+...+... .+|.+++.+|+..|..
T Consensus 318 ~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~ 359 (416)
T 3zvl_A 318 NPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREM 359 (416)
T ss_dssp CCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhcc
Confidence 7665544332211 8899999999999853
No 71
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.93 E-value=7.4e-09 Score=68.13 Aligned_cols=30 Identities=13% Similarity=0.215 Sum_probs=24.7
Q ss_pred CCCCChHHHHHHHHHHhCCcee--chhHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHI--STGDLLRE 30 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i--~~~~l~~~ 30 (153)
||||||||+|+.|+++++..++ +.|+++..
T Consensus 11 ~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~ 42 (178)
T 1qhx_A 11 GSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEA 42 (178)
T ss_dssp CTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCCCeEEeccchHhhh
Confidence 6999999999999999987655 57776654
No 72
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=98.90 E-value=2.8e-09 Score=72.60 Aligned_cols=124 Identities=16% Similarity=0.116 Sum_probs=63.0
Q ss_pred CCCCChHHHHHHHHHHhCCcee-chhHHHHHHHhcCCcchhHHHHHHHcC-----CCCCHHHHHHHH--------HHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHI-STGDLLREEVNSGSARGADLSKVMKDG-----GLVSTDVVMELL--------GEKVL 66 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i-~~~~l~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~~~~l--------~~~~~ 66 (153)
++||||||+++.|++.+.-..+ +. .+.++ ..+++.|..+.+++... .........-++ .+.+.
T Consensus 11 ~~gsGKsT~~~~l~~~l~~~~~~~v-~~~re--p~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~~~~~~~i~ 87 (213)
T 4tmk_A 11 LEGAGKTTARNVVVETLEQLGIRDM-VFTRE--PGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQLVETVIK 87 (213)
T ss_dssp CTTSCHHHHHHHHHHHHHHTTCCCE-EEEES--SCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHHHHHHTHH
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCcc-eeeeC--CCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999998832222 10 00011 23566777777776522 223332111111 11222
Q ss_pred hhCCCCCcEeecCCccchhhhhhhhhhhhhHHHHHHHHhhcCCCCcceeecCCCCCc-hHHHHHHHHhCCCCeEEEeecC
Q psy11030 67 KELPNSKGYLIDGYPREKAQGEQFEREDVVMELLGEKVLKELPNSKGYLIDGYPREK-AQGEQFEREINSPTGIVYFEVP 145 (153)
Q Consensus 67 ~~~~~~~~~ildg~p~~~~q~~~~~~~~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~-~~~~~~~~~~~~~~~vi~l~~~ 145 (153)
.....+..+|.|.|.-. ....+.. .| |.+.+. .+.+.+....+.||+||+|++|
T Consensus 88 paL~~g~~VI~DRy~~S--------------~~AYq~~-~~----------g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~ 142 (213)
T 4tmk_A 88 PALANGTWVIGDRHDLS--------------TQAYQGG-GR----------GIDQHMLATLRDAVLGDFRPDLTLYLDVT 142 (213)
T ss_dssp HHHHTTCEEEEECCHHH--------------HHHHTTT-TT----------CCCHHHHHHHHHHHHTTCCCSEEEEEECC
T ss_pred HHHHCCCEEEEcCcHhH--------------HHHHccc-cc----------CCCHHHHHHHHHHhccCCCCCEEEEEeCC
Confidence 22244566787887211 1111000 01 222211 1122233335689999999999
Q ss_pred cchhh-hc
Q psy11030 146 DDVMT-IL 152 (153)
Q Consensus 146 ~~~~~-~l 152 (153)
++++. |+
T Consensus 143 ~e~~~~Ri 150 (213)
T 4tmk_A 143 PEVGLKRA 150 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988 75
No 73
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=98.87 E-value=1.8e-09 Score=71.39 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=16.9
Q ss_pred CCCCChHHHHHHHHHHhCCcee
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHI 22 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i 22 (153)
+|||||||+|+.|+++++++++
T Consensus 13 ~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 13 PFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CC----CHHHHHHHHHSTTCEE
T ss_pred CCCCCHHHHHHHHHHhcCCCEE
Confidence 6999999999999999999988
No 74
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=98.87 E-value=5.8e-10 Score=76.38 Aligned_cols=19 Identities=32% Similarity=0.302 Sum_probs=16.8
Q ss_pred CCCCChHHHHHHHHHHhCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGY 19 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~ 19 (153)
++||||||+++.|++.++.
T Consensus 29 ~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 29 IDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp STTSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 5899999999999998754
No 75
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.84 E-value=1.4e-08 Score=70.82 Aligned_cols=32 Identities=22% Similarity=0.482 Sum_probs=29.7
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEV 32 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~ 32 (153)
|+||||||+++.|++++|+.+++.|.+++...
T Consensus 35 ~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~ 66 (252)
T 4e22_A 35 PSGAGKGTLCKALAESLNWRLLDSGAIYRVLA 66 (252)
T ss_dssp CTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCCCcCCCCceehHhH
Confidence 78999999999999999999999999997754
No 76
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=98.83 E-value=5.2e-09 Score=70.63 Aligned_cols=30 Identities=33% Similarity=0.398 Sum_probs=27.7
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREE 31 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~ 31 (153)
|+||||||+|+.||+++|+++++ +++++..
T Consensus 14 ~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~ 43 (201)
T 3fdi_A 14 EFGSGGHLVAKKLAEHYNIPLYS-KELLDEV 43 (201)
T ss_dssp CTTSSHHHHHHHHHHHTTCCEEC-HHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhCcCEEC-HHHHHHH
Confidence 68999999999999999999999 8888764
No 77
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=98.83 E-value=7.6e-09 Score=69.63 Aligned_cols=121 Identities=19% Similarity=0.248 Sum_probs=60.3
Q ss_pred CCCCChHHHHHHHHHHh---CCceechhHHHHHHHhcCCcchhHHHHHHHcCCCCCHHHHHH------HHHHHHhhhCCC
Q psy11030 1 GPGSGKGTQAEKIVQKY---GYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVME------LLGEKVLKELPN 71 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~---~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~l~~~~~~~~~~ 71 (153)
+-||||||+++.|++.| |+.++.+.. ..++..+..+..++......+.....- .....+......
T Consensus 8 ~DGsGKsTq~~~L~~~L~~~g~~v~~tre------P~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~L~~ 81 (197)
T 3hjn_A 8 IDGSGKSTQIQLLAQYLEKRGKKVILKRE------PGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYLSE 81 (197)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcEEEEEC------CCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 36999999999999988 565553311 113334444444443333322221111 111223333344
Q ss_pred CCcEeecCCccchhhhhhhhhhhhhHHHHHHHHhhcCCCCcceeecCCCCCc-hHHHHHHHHhCCCCeEEEeecCcchhh
Q psy11030 72 SKGYLIDGYPREKAQGEQFEREDVVMELLGEKVLKELPNSKGYLIDGYPREK-AQGEQFEREINSPTGIVYFEVPDDVMT 150 (153)
Q Consensus 72 ~~~~ildg~p~~~~q~~~~~~~~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~-~~~~~~~~~~~~~~~vi~l~~~~~~~~ 150 (153)
+..+|.|.|.-. ....+ ...+ |.+... .+...+......||+++++|+|+++..
T Consensus 82 g~~Vi~DRy~~S--------------~~ayq-~~~~----------~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~ 136 (197)
T 3hjn_A 82 GYAVLLDRYTDS--------------SVAYQ-GFGR----------NLGKEIVEELNDFATDGLIPDLTFYIDVDVETAL 136 (197)
T ss_dssp TCEEEEESCHHH--------------HHHHH-TTTT----------CSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHH
T ss_pred CCeEEecccchH--------------HHHHH-Hhcc----------CCCHHHHHHHHhhhhcCCCCCceeecCcChHHHH
Confidence 566777877211 00110 0001 222211 122223333457999999999999887
Q ss_pred -hc
Q psy11030 151 -IL 152 (153)
Q Consensus 151 -~l 152 (153)
|.
T Consensus 137 ~R~ 139 (197)
T 3hjn_A 137 KRK 139 (197)
T ss_dssp HHC
T ss_pred HhC
Confidence 64
No 78
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=98.83 E-value=3e-08 Score=67.63 Aligned_cols=122 Identities=16% Similarity=0.127 Sum_probs=65.0
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhcCCcchhHHHHHHHcCC-CCCHHHHHHHH-HH------HHhhhCCCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGG-LVSTDVVMELL-GE------KVLKELPNS 72 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~l-~~------~~~~~~~~~ 72 (153)
++||||||+++.|++.++....-+ +. ...+++.|..+.+++.... ........-++ .+ .+......+
T Consensus 13 ~~g~GKst~~~~l~~~l~~~~~~~----~e-p~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~~~I~paL~~g 87 (216)
T 3tmk_A 13 LDRTGKTTQCNILYKKLQPNCKLL----KF-PERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVDKIKKDLLEG 87 (216)
T ss_dssp CSSSSHHHHHHHHHHHHCSSEEEE----ES-SCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHhcccceEE----Ee-cCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 689999999999999998632111 11 1125667777777766543 22222111111 11 222222345
Q ss_pred CcEeecCCccchhhhhhhhhhhhhHHHHHHHHhhcCCCCcceeecCCCCCchHHHHHHHHhCCCCeEEEe-ecCcchhh-
Q psy11030 73 KGYLIDGYPREKAQGEQFEREDVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQFEREINSPTGIVYF-EVPDDVMT- 150 (153)
Q Consensus 73 ~~~ildg~p~~~~q~~~~~~~~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~vi~l-~~~~~~~~- 150 (153)
..+|.|.|.- .....+. .+. +++ ....+...+....+.||++|+| |+|++++.
T Consensus 88 ~~VI~DRy~~--------------S~~ayq~--~~~-------l~~--~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~ 142 (216)
T 3tmk_A 88 KNIVMDRYVY--------------SGVAYSA--AKG-------TNG--MDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAE 142 (216)
T ss_dssp CEEEEESCHH--------------HHHHHHH--TTC-------CTT--CCHHHHHGGGTTSBCCSEEEEEECSCCSCGGG
T ss_pred CEEEEeccHh--------------HHHHHHH--hcC-------CCH--HHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHH
Confidence 5677788721 1112221 111 111 1222222333445689999999 99999988
Q ss_pred hc
Q psy11030 151 IL 152 (153)
Q Consensus 151 ~l 152 (153)
|+
T Consensus 143 R~ 144 (216)
T 3tmk_A 143 KS 144 (216)
T ss_dssp CC
T ss_pred Hh
Confidence 75
No 79
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=98.82 E-value=6e-09 Score=70.58 Aligned_cols=59 Identities=27% Similarity=0.465 Sum_probs=49.3
Q ss_pred hhhHHHHHHHHhhcCCCCcceeecCCCCCchHHHHHHHHh----CCCCeEEEeecCcchhh-hc
Q psy11030 94 DVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQFEREI----NSPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 94 ~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~~~~~~----~~~~~vi~l~~~~~~~~-~l 152 (153)
-+|+++..+-+..+-....+|++|||||+..||+.|+..+ ..+++||++++|+++++ ||
T Consensus 58 lvpd~iv~~lv~~~l~~~~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl 121 (206)
T 3sr0_A 58 LVPDDLIIALIEEVFPKHGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERL 121 (206)
T ss_dssp CCCHHHHHHHHHHHCCSSSCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHH
T ss_pred cCCHHHHHHHHHHhhccCCceEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHH
Confidence 5677777777777766677899999999999999986443 47999999999999998 86
No 80
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=98.77 E-value=1.9e-08 Score=69.68 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=29.7
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVN 33 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~ 33 (153)
++||||||+|+.|++++|+++++.++.+++.+.
T Consensus 9 ~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~~~~ 41 (241)
T 1dek_A 9 VKRSGKDTTADFIMSNYSAVKYQLAGPIKDALA 41 (241)
T ss_dssp CTTSSHHHHHHHHHHHSCEEECCTTHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCCeEEecChHHHHHHH
Confidence 589999999999999899999999998887654
No 81
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.76 E-value=5.1e-09 Score=70.69 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=27.0
Q ss_pred CCCCChHHHHHHHHHHh-CCceechhHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKY-GYTHISTGDLLRE 30 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~-~~~~i~~~~l~~~ 30 (153)
||||||||+++.|++.+ ++.+++.|+++..
T Consensus 29 ~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~ 59 (207)
T 2qt1_A 29 VTNSGKTTLAKNLQKHLPNCSVISQDDFFKP 59 (207)
T ss_dssp STTSSHHHHHHHHHTTSTTEEEEEGGGGBCC
T ss_pred CCCCCHHHHHHHHHHhcCCcEEEeCCccccC
Confidence 68999999999999988 8999999988753
No 82
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.70 E-value=2e-08 Score=68.05 Aligned_cols=27 Identities=19% Similarity=0.195 Sum_probs=22.1
Q ss_pred CCCCChHHHHHHHHHHhC------CceechhHH
Q psy11030 1 GPGSGKGTQAEKIVQKYG------YTHISTGDL 27 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~------~~~i~~~~l 27 (153)
+|||||||+++.|++.++ +.+++.+.+
T Consensus 33 ~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 33 LSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp STTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 689999999999999886 667775443
No 83
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=98.66 E-value=6.4e-08 Score=66.29 Aligned_cols=33 Identities=21% Similarity=0.353 Sum_probs=28.9
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHHhc
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNS 34 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~~~ 34 (153)
++||||||+|+.||+++|+++++ +++++.....
T Consensus 22 ~~gsGk~~i~~~la~~lg~~~~d-~~~~~~~a~~ 54 (223)
T 3hdt_A 22 EYGSGGRIVGKKLAEELGIHFYD-DDILKLASEK 54 (223)
T ss_dssp CTTSCHHHHHHHHHHHHTCEEEC-HHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHcCCcEEc-HHHHHHHHHH
Confidence 68999999999999999999999 7777776543
No 84
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.64 E-value=1.1e-07 Score=63.69 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=20.9
Q ss_pred CCCCChHHHHHHHHHHhCCceec
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIS 23 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~ 23 (153)
+|||||||+++.|+++++..+++
T Consensus 8 ~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 8 TVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp CTTSCHHHHHHHHHHHHCCEEEC
T ss_pred CCccCHHHHHHHHHHhcCCcEEc
Confidence 69999999999999999987764
No 85
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.59 E-value=1.5e-07 Score=62.38 Aligned_cols=27 Identities=26% Similarity=0.245 Sum_probs=21.0
Q ss_pred CCCCChHHHHHHHHHHhC-----CceechhHH
Q psy11030 1 GPGSGKGTQAEKIVQKYG-----YTHISTGDL 27 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~-----~~~i~~~~l 27 (153)
+|||||||+++.|++.++ +.+++.+.+
T Consensus 21 ~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 21 LPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 689999999999999884 345665443
No 86
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.59 E-value=3.1e-08 Score=69.06 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=26.3
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLL 28 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~ 28 (153)
||||||||+|+.|++++++.++++|++.
T Consensus 9 ~~GSGKSTla~~La~~~~~~~i~~D~~~ 36 (253)
T 2ze6_A 9 PTCSGKTDMAIQIAQETGWPVVALDRVQ 36 (253)
T ss_dssp CTTSSHHHHHHHHHHHHCCCEEECCSGG
T ss_pred CCCcCHHHHHHHHHhcCCCeEEeccHHh
Confidence 7999999999999999999999998864
No 87
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.56 E-value=3e-07 Score=61.85 Aligned_cols=38 Identities=11% Similarity=-0.019 Sum_probs=25.9
Q ss_pred CCCcEeecCCccchhhhhh-hh--h-h----h-hhHHHHHHHHhhcC
Q psy11030 71 NSKGYLIDGYPREKAQGEQ-FE--R-E----D-VVMELLGEKVLKEL 108 (153)
Q Consensus 71 ~~~~~ildg~p~~~~q~~~-~~--~-~----~-~~~~~l~~Rl~~R~ 108 (153)
.+..+|+|+.+....+... +. . . . +|.+++.+|+..|.
T Consensus 102 ~g~~vi~d~~~~~~~~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~ 148 (204)
T 2qor_A 102 EGKICLFEMNINGVKQLKESKHIQDGIYIFVKPPSIDILLGRLKNRN 148 (204)
T ss_dssp TTCEEEEECCHHHHHHHHHCSSCSCCEEEEEECSCHHHHHHHHHTCT
T ss_pred cCCeEEEEECHHHHHHHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcC
Confidence 3578899887655544432 22 1 1 5 89999999999875
No 88
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=98.54 E-value=6.4e-07 Score=68.51 Aligned_cols=105 Identities=14% Similarity=0.156 Sum_probs=56.3
Q ss_pred CCCCChHHHHHHHHHHhCCc-----eechhHHHHHHHhcCCcchhHHHHHHHcCCC----CCHHHHHHHHHHHHhhhC--
Q psy11030 1 GPGSGKGTQAEKIVQKYGYT-----HISTGDLLREEVNSGSARGADLSKVMKDGGL----VSTDVVMELLGEKVLKEL-- 69 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~-----~i~~~~l~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~-- 69 (153)
+|||||||+|+.|++.++.. +++.|++.+........ . .++..... .........+ ..+....
T Consensus 43 lpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~-~----~~f~~~~~~~~~~re~~~~~~l-~~~~~~L~~ 116 (520)
T 2axn_A 43 LPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSS-Y----NFFRPDNEEAMKVRKQCALAAL-RDVKSYLAK 116 (520)
T ss_dssp CTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCC-G----GGGCTTCHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCcc-c----cccCcccHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 59999999999999998533 46888866664432111 0 11100000 0001111111 1111111
Q ss_pred CCCCcEeecCCccchhhhhhhhhh-------------hhh-HHHHHHHHhhcCCCC
Q psy11030 70 PNSKGYLIDGYPREKAQGEQFERE-------------DVV-MELLGEKVLKELPNS 111 (153)
Q Consensus 70 ~~~~~~ildg~p~~~~q~~~~~~~-------------~~~-~~~l~~Rl~~R~~~~ 111 (153)
..+..+|+|+......+...+... .|+ ++++.+|+..|....
T Consensus 117 ~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~~~r 172 (520)
T 2axn_A 117 EGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVKISS 172 (520)
T ss_dssp SCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHTTTS
T ss_pred cCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhhhcC
Confidence 345689999987665554332111 555 788889997775443
No 89
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.47 E-value=1.4e-07 Score=64.91 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=30.0
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEV 32 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~ 32 (153)
||||||||+|+.|++++|+.+++.+.+++...
T Consensus 17 ~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~ 48 (233)
T 3r20_A 17 PAGTGKSSVSRGLARALGARYLDTGAMYRIAT 48 (233)
T ss_dssp CTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhCCCcccCCcHHHHHH
Confidence 79999999999999999999999999988854
No 90
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.46 E-value=3.1e-07 Score=60.46 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=21.6
Q ss_pred CCCCChHHHHHHHHHHh---CCceechh
Q psy11030 1 GPGSGKGTQAEKIVQKY---GYTHISTG 25 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~---~~~~i~~~ 25 (153)
++||||||+++.|++.+ |++++.++
T Consensus 13 ~~GsGKST~~~~L~~~l~~~g~~~i~~d 40 (179)
T 2pez_A 13 LSGAGKTTVSMALEEYLVCHGIPCYTLD 40 (179)
T ss_dssp CTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCHHHHHHHHHHHHhhCCCcEEEEC
Confidence 68999999999999988 88877554
No 91
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.36 E-value=2.2e-07 Score=62.29 Aligned_cols=68 Identities=12% Similarity=0.021 Sum_probs=38.0
Q ss_pred CCcEeecCCccchhhhhhh-hhh------hhhHHHHHHHHhhcCCCCcceeecCCCCCchHHHH-----HHHHhCCCCeE
Q psy11030 72 SKGYLIDGYPREKAQGEQF-ERE------DVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQ-----FEREINSPTGI 139 (153)
Q Consensus 72 ~~~~ildg~p~~~~q~~~~-~~~------~~~~~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~-----~~~~~~~~~~v 139 (153)
+..+|+|+.+....+.... ... ..+.+++.+|+.+|...+ ....+.+. .......+|.|
T Consensus 97 g~~vi~d~~~~~~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~~~---------~~~i~~rl~~~~~~~~~~~~~d~v 167 (205)
T 3tr0_A 97 GRDVLLEIDWQGARQIRELFPPALSIFILPPSIEALRERLIKRRQDD---------TAIIEQRLALAREEMAHYKEFDYL 167 (205)
T ss_dssp TCEEEEECCHHHHHHHHHHCTTCEEEEEECSCHHHHHHHHHTCTTSC---------SSTHHHHHHHHHHHHTTGGGCSEE
T ss_pred CCeEEEEECHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHHHhcccCCCEE
Confidence 4567888765554443221 111 346999999999985322 22222221 12223468999
Q ss_pred EEeecCcchh
Q psy11030 140 VYFEVPDDVM 149 (153)
Q Consensus 140 i~l~~~~~~~ 149 (153)
|.++ +.+.+
T Consensus 168 i~n~-~~~~~ 176 (205)
T 3tr0_A 168 VVND-NFDQA 176 (205)
T ss_dssp EECS-SHHHH
T ss_pred EECC-CHHHH
Confidence 9988 65544
No 92
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=98.35 E-value=8.9e-07 Score=68.90 Aligned_cols=30 Identities=23% Similarity=0.310 Sum_probs=24.6
Q ss_pred CCCCChHHHHHHHHHHh---CCceechh-HHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKY---GYTHISTG-DLLRE 30 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~---~~~~i~~~-~l~~~ 30 (153)
+|||||||+|+.|++.+ |+.++.++ +.++.
T Consensus 60 lsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~ 93 (630)
T 1x6v_B 60 LSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQ 93 (630)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhh
Confidence 58999999999999999 88887764 44443
No 93
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.35 E-value=1.8e-06 Score=57.84 Aligned_cols=28 Identities=29% Similarity=0.262 Sum_probs=23.1
Q ss_pred CCCCChHHHHHHHHHHh---CCc--eechhHHH
Q psy11030 1 GPGSGKGTQAEKIVQKY---GYT--HISTGDLL 28 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~---~~~--~i~~~~l~ 28 (153)
|+||||||+++.|+..+ |.. +++.+++.
T Consensus 33 ~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 33 LSGSGKSTLACALNQMLYQKGKLCYILDGDNVR 65 (200)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhcCceEEEecCchhh
Confidence 78999999999999998 555 77776653
No 94
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.33 E-value=6.4e-08 Score=65.12 Aligned_cols=37 Identities=16% Similarity=0.125 Sum_probs=12.7
Q ss_pred CCcEeecCCccchhhhh-hhhhh---hhhHHHHHHHHhhcC
Q psy11030 72 SKGYLIDGYPREKAQGE-QFERE---DVVMELLGEKVLKEL 108 (153)
Q Consensus 72 ~~~~ildg~p~~~~q~~-~~~~~---~~~~~~l~~Rl~~R~ 108 (153)
...+|+||......... .++.. +||.+++.+|+.+|+
T Consensus 125 ~~~vIveg~~l~~~~~~~~~d~~i~v~~~~~~~~~R~~~R~ 165 (201)
T 1rz3_A 125 SDMIMIEGVFLQRKEWRPFFDFVVYLDCPREIRFARENDQV 165 (201)
T ss_dssp CSEEEEEETTTTSTTTGGGCSEEEEECCC------------
T ss_pred CcEEEEechhhccHHHHhhcCEEEEEeCCHHHHHHHHhcCC
Confidence 35678888643322221 12222 999999999999985
No 95
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=98.26 E-value=4.3e-06 Score=64.30 Aligned_cols=31 Identities=26% Similarity=0.259 Sum_probs=23.8
Q ss_pred CCCCChHHHHHHHHHHhCC-----ceechhHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGY-----THISTGDLLREEV 32 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~-----~~i~~~~l~~~~~ 32 (153)
+|||||||+|+.|++.++. .+++.|. +++.+
T Consensus 380 ~~GsGKSTia~~La~~L~~~G~~~~~ld~D~-ir~~l 415 (546)
T 2gks_A 380 LPCAGKSTIAEILATMLQARGRKVTLLDGDV-VRTHL 415 (546)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEEEECHHH-HHHHT
T ss_pred CCCCCHHHHHHHHHHHhhhcCCeEEEECchH-hhhhh
Confidence 5899999999999998863 6677654 45543
No 96
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=98.21 E-value=8.9e-07 Score=61.88 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=19.5
Q ss_pred CCCCChHHHHHHHHHHh-CCceec
Q psy11030 1 GPGSGKGTQAEKIVQKY-GYTHIS 23 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~-~~~~i~ 23 (153)
++||||||+++.|++.+ ++.++.
T Consensus 32 ~~GsGKST~~~~L~~~l~~~~~i~ 55 (263)
T 1p5z_B 32 NIAAGKSTFVNILKQLCEDWEVVP 55 (263)
T ss_dssp STTSSHHHHHTTTGGGCTTEEEEC
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEe
Confidence 58999999999999998 566663
No 97
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.18 E-value=2e-06 Score=61.60 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=22.2
Q ss_pred CCCCChHHHHHHHHHHhC-------CceechhHH
Q psy11030 1 GPGSGKGTQAEKIVQKYG-------YTHISTGDL 27 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~-------~~~i~~~~l 27 (153)
|+||||||+++.|+..++ +.+++++..
T Consensus 88 ~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 88 SVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 689999999999999876 566666654
No 98
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.04 E-value=7.1e-07 Score=59.21 Aligned_cols=17 Identities=35% Similarity=0.646 Sum_probs=15.5
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+++.|+..+
T Consensus 9 psGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 9 PSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp SSSSSHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 78999999999999765
No 99
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.94 E-value=1.4e-06 Score=58.00 Aligned_cols=40 Identities=10% Similarity=0.018 Sum_probs=26.1
Q ss_pred CCcEeecCCccchhhhhhhhh-h-------hhhHHHHHHHHhhcCCCC
Q psy11030 72 SKGYLIDGYPREKAQGEQFER-E-------DVVMELLGEKVLKELPNS 111 (153)
Q Consensus 72 ~~~~ildg~p~~~~q~~~~~~-~-------~~~~~~l~~Rl~~R~~~~ 111 (153)
+..+|+|..+.-..+...... . ..+.+++.+||..|..++
T Consensus 92 g~~vil~id~~g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~Rg~e~ 139 (186)
T 1ex7_A 92 GKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTET 139 (186)
T ss_dssp TSEEEEECCHHHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHCCSC
T ss_pred CCEEEecCCHHHHHHHHHhcccCceEEEEeCCCHHHHHHHHHhcCCCC
Confidence 467788877655555543211 1 557789999999996544
No 100
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.92 E-value=5.9e-05 Score=51.31 Aligned_cols=49 Identities=43% Similarity=0.632 Sum_probs=36.8
Q ss_pred HHHHHHHHhhhCCCCCcEeecCCccchhhhhhhhhh----------hhhHHHHHHHHhhcCCC
Q psy11030 58 MELLGEKVLKELPNSKGYLIDGYPREKAQGEQFERE----------DVVMELLGEKVLKELPN 110 (153)
Q Consensus 58 ~~~l~~~~~~~~~~~~~~ildg~p~~~~q~~~~~~~----------~~~~~~l~~Rl~~R~~~ 110 (153)
.+.+.+..... .+||+||||++..|++.+... +||++++.+|+..|...
T Consensus 98 ~~~l~~~~~~~----~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~~ 156 (217)
T 3umf_A 98 KEAMIKLVDKN----CHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAET 156 (217)
T ss_dssp HHHHHHHTTTC----SEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC---
T ss_pred HHHHhhccccc----cCcccccCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhccccc
Confidence 33444444444 689999999999999888665 89999999999998643
No 101
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.90 E-value=2.8e-06 Score=61.16 Aligned_cols=28 Identities=21% Similarity=0.194 Sum_probs=25.9
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLL 28 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~ 28 (153)
|+||||||+|+.|+++++..++++|.+.
T Consensus 13 ptGsGKTtla~~La~~l~~~iis~Ds~q 40 (323)
T 3crm_A 13 PTAAGKTDLAMALADALPCELISVDSAL 40 (323)
T ss_dssp CTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred CCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence 7999999999999999999999998763
No 102
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.89 E-value=1e-06 Score=62.57 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=23.4
Q ss_pred CCCCChHHHHHHHHHHhC-----CceechhHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYG-----YTHISTGDLLR 29 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~-----~~~i~~~~l~~ 29 (153)
|+||||||+|+.|++.++ +.++++|++.+
T Consensus 13 ~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 13 SSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp CC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 689999999999999887 78999999875
No 103
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.84 E-value=7.2e-06 Score=54.23 Aligned_cols=29 Identities=41% Similarity=0.585 Sum_probs=23.3
Q ss_pred CCCCChHHHHHHHHHHhCCc--eechhHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYT--HISTGDLLR 29 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~--~i~~~~l~~ 29 (153)
||||||||+++.|+..++.. +++.+++..
T Consensus 17 ~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~ 47 (191)
T 1zp6_A 17 HPGSGKSTIAEALANLPGVPKVHFHSDDLWG 47 (191)
T ss_dssp CTTSCHHHHHHHHHTCSSSCEEEECTTHHHH
T ss_pred CCCCCHHHHHHHHHhccCCCeEEEcccchhh
Confidence 79999999999999976544 677777643
No 104
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.79 E-value=4.8e-06 Score=60.29 Aligned_cols=27 Identities=22% Similarity=0.291 Sum_probs=25.5
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDL 27 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l 27 (153)
|+||||||+|..|++.++..++++|++
T Consensus 15 ptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 15 PTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp STTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred CCcCcHHHHHHHHHHHcCCceeccccc
Confidence 789999999999999999999999886
No 105
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=97.76 E-value=2.5e-05 Score=53.58 Aligned_cols=37 Identities=32% Similarity=0.583 Sum_probs=32.7
Q ss_pred CcEeecCCccchhhhhhhhhh----------hhhHHHHHHHHhhcCC
Q psy11030 73 KGYLIDGYPREKAQGEQFERE----------DVVMELLGEKVLKELP 109 (153)
Q Consensus 73 ~~~ildg~p~~~~q~~~~~~~----------~~~~~~l~~Rl~~R~~ 109 (153)
.+||+||||++..|++.+... +||++++.+|+..|+.
T Consensus 87 ~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~~ 133 (230)
T 3gmt_A 87 NGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRRT 133 (230)
T ss_dssp TCEEEESCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEEE
T ss_pred CCeEecCCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCCc
Confidence 489999999999999877643 9999999999999973
No 106
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.72 E-value=3.1e-05 Score=58.51 Aligned_cols=31 Identities=19% Similarity=0.296 Sum_probs=23.7
Q ss_pred CCCCChHHHHHHHHHHhC-----CceechhHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYG-----YTHISTGDLLREE 31 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~-----~~~i~~~~l~~~~ 31 (153)
.|||||||+++.|++.++ ..+++.+++.+..
T Consensus 47 lpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~ 82 (469)
T 1bif_A 47 LPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDM 82 (469)
T ss_dssp CTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhh
Confidence 589999999999999875 3456676755553
No 107
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.71 E-value=2.3e-05 Score=51.75 Aligned_cols=29 Identities=17% Similarity=0.260 Sum_probs=23.8
Q ss_pred CCCCChHHHHHHHHHHhCC-ceechhHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGY-THISTGDLLR 29 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~-~~i~~~~l~~ 29 (153)
||||||||+++.|+..++. .+++.+++.+
T Consensus 10 ~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~ 39 (189)
T 2bdt_A 10 PAGVGKSTTCKRLAAQLDNSAYIEGDIINH 39 (189)
T ss_dssp STTSSHHHHHHHHHHHSSSEEEEEHHHHHT
T ss_pred CCCCcHHHHHHHHhcccCCeEEEcccchhh
Confidence 7999999999999987765 6788776643
No 108
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=97.69 E-value=0.00011 Score=56.85 Aligned_cols=30 Identities=23% Similarity=0.211 Sum_probs=22.3
Q ss_pred CCCCChHHHHHHHHHHhC----C--ceechhHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYG----Y--THISTGDLLREE 31 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~----~--~~i~~~~l~~~~ 31 (153)
+|||||||+|+.|+++++ . .+++. +.++..
T Consensus 404 lsGSGKSTiA~~La~~L~~~G~~~~~~lD~-D~ir~~ 439 (573)
T 1m8p_A 404 YMNSGKDAIARALQVTLNQQGGRSVSLLLG-DTVRHE 439 (573)
T ss_dssp STTSSHHHHHHHHHHHHHHHCSSCEEEEEH-HHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcccCCceEEEECc-HHHHHH
Confidence 589999999999999986 3 34554 445543
No 109
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.68 E-value=1.7e-05 Score=56.28 Aligned_cols=28 Identities=43% Similarity=0.665 Sum_probs=23.0
Q ss_pred CCCCChHHHHHHHHHHhCCcee--chhHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHI--STGDLL 28 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i--~~~~l~ 28 (153)
|||+|||++|+.+|++++.+++ +.+++.
T Consensus 44 ppGtGKT~la~aiA~~l~~~~i~v~~~~l~ 73 (293)
T 3t15_A 44 GKGQGKSFQCELVFRKMGINPIMMSAGELE 73 (293)
T ss_dssp CTTSCHHHHHHHHHHHHTCCCEEEEHHHHH
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEEeHHHhh
Confidence 8999999999999999987654 555553
No 110
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.66 E-value=8.7e-05 Score=51.21 Aligned_cols=43 Identities=37% Similarity=0.861 Sum_probs=36.6
Q ss_pred CCcceeecCCCCCchHHHHHHHHh----CCCCeEEEeecCcchhh-hc
Q psy11030 110 NSKGYLIDGYPREKAQGEQFEREI----NSPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 110 ~~~~~~~dg~~~~~~~~~~~~~~~----~~~~~vi~l~~~~~~~~-~l 152 (153)
...++++||||++..|++.+.+.+ ..+|.||++++|+++++ ||
T Consensus 106 ~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl 153 (243)
T 3tlx_A 106 CKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRI 153 (243)
T ss_dssp GSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHH
T ss_pred ccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHH
Confidence 357899999999999998876543 57999999999999988 76
No 111
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.65 E-value=2.1e-05 Score=58.72 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=21.2
Q ss_pred CCCCChHHHHHHHHHHhCCceec
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIS 23 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~ 23 (153)
|||+|||++|+++|.+++++++.
T Consensus 214 PPGtGKT~lakAiA~~~~~~~~~ 236 (428)
T 4b4t_K 214 PPGTGKTMLVKAVANSTKAAFIR 236 (428)
T ss_dssp CTTTTHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCHHHHHHHHHHHhCCCeEE
Confidence 89999999999999999987764
No 112
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.64 E-value=1.2e-05 Score=58.09 Aligned_cols=27 Identities=15% Similarity=0.378 Sum_probs=25.4
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDL 27 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l 27 (153)
|+||||||+|..||++++..+||+|.+
T Consensus 48 PTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 48 ATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp STTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 789999999999999999999998876
No 113
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.63 E-value=2.4e-05 Score=52.54 Aligned_cols=29 Identities=24% Similarity=0.429 Sum_probs=25.0
Q ss_pred CCCCChHHHHHHHHHHhC--CceechhHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYG--YTHISTGDLLR 29 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~--~~~i~~~~l~~ 29 (153)
|+||||||+++.|+..++ +.+++.+..++
T Consensus 14 ~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~ 44 (211)
T 3asz_A 14 GTASGKTTLAQALARTLGERVALLPMDHYYK 44 (211)
T ss_dssp STTSSHHHHHHHHHHHHGGGEEEEEGGGCBC
T ss_pred CCCCCHHHHHHHHHHHhCCCeEEEecCcccc
Confidence 689999999999999988 88888776543
No 114
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.63 E-value=2.3e-05 Score=57.98 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.7
Q ss_pred CCCCChHHHHHHHHHHhCCceech
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIST 24 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~ 24 (153)
|||+|||++|+++|.+++.+++++
T Consensus 190 PPGTGKTllAkAiA~e~~~~f~~v 213 (405)
T 4b4t_J 190 PPGTGKTLLARAVAHHTDCKFIRV 213 (405)
T ss_dssp CSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCHHHHHHHHHHhhCCCceEE
Confidence 899999999999999999887653
No 115
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.63 E-value=2.3e-05 Score=58.53 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=21.1
Q ss_pred CCCCChHHHHHHHHHHhCCceec
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIS 23 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~ 23 (153)
|||+|||++|+++|.+++++++.
T Consensus 223 PPGTGKTllAkAiA~e~~~~f~~ 245 (434)
T 4b4t_M 223 PPGTGKTLLARACAAQTNATFLK 245 (434)
T ss_dssp CTTSSHHHHHHHHHHHHTCEEEE
T ss_pred cCCCCHHHHHHHHHHHhCCCEEE
Confidence 89999999999999999987754
No 116
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.61 E-value=2.5e-05 Score=58.43 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=21.2
Q ss_pred CCCCChHHHHHHHHHHhCCceec
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIS 23 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~ 23 (153)
|||+|||++|+++|.++|++++.
T Consensus 223 PPGtGKTllAkAiA~e~~~~~~~ 245 (437)
T 4b4t_L 223 PPGTGKTLLAKAVAATIGANFIF 245 (437)
T ss_dssp CTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCCcHHHHHHHHHHHhCCCEEE
Confidence 89999999999999999987764
No 117
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.54 E-value=0.00017 Score=48.72 Aligned_cols=54 Identities=30% Similarity=0.498 Sum_probs=40.2
Q ss_pred HHHHHHHhhcCCCCcceeecCCCCCchHHHHHHH----HhCCCCeEEEeecCcchhh-hc
Q psy11030 98 ELLGEKVLKELPNSKGYLIDGYPREKAQGEQFER----EINSPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 98 ~~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~~~~----~~~~~~~vi~l~~~~~~~~-~l 152 (153)
+.+..++.. .....++++||||++..|++.+.. ....||+||+|++|++++. |+
T Consensus 71 ~~i~~~l~~-~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl 129 (217)
T 3be4_A 71 GLVKEKFDL-GVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERI 129 (217)
T ss_dssp HHHHHHHHT-TTTTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHH
T ss_pred HHHHHHHhc-cccCCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHH
Confidence 334445543 334578999999999888887653 3347999999999999998 76
No 118
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.54 E-value=2.2e-05 Score=56.23 Aligned_cols=27 Identities=15% Similarity=0.181 Sum_probs=25.1
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDL 27 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l 27 (153)
|+||||||+|..|+++++..+||+|..
T Consensus 11 ptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 11 PTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp CTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred CCcCCHHHHHHHHHHhCccceeecCcc
Confidence 789999999999999999999988875
No 119
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=97.52 E-value=0.00031 Score=50.80 Aligned_cols=19 Identities=16% Similarity=-0.006 Sum_probs=16.7
Q ss_pred CCCCeEEEeecCcchhh-hc
Q psy11030 134 NSPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 134 ~~~~~vi~l~~~~~~~~-~l 152 (153)
..||++|||++|.++.. |+
T Consensus 156 ~~PDLtIyLd~~pe~~l~RI 175 (334)
T 1p6x_A 156 PQGGNIVVTTLNVEEHIRRL 175 (334)
T ss_dssp CTTEEEEEEECCHHHHHHHH
T ss_pred CCCCEEEEEECCHHHHHHHH
Confidence 36999999999999988 75
No 120
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.51 E-value=3.4e-05 Score=55.15 Aligned_cols=27 Identities=22% Similarity=0.137 Sum_probs=24.5
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDL 27 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l 27 (153)
|+||||||+|..|+++++..++|+|..
T Consensus 18 ptgsGKt~la~~La~~~~~~iis~Ds~ 44 (316)
T 3foz_A 18 PTASGKTALAIELRKILPVELISVDSA 44 (316)
T ss_dssp CTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred CCccCHHHHHHHHHHhCCCcEEecccc
Confidence 789999999999999999988888763
No 121
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.51 E-value=4.3e-05 Score=57.41 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=21.2
Q ss_pred CCCCChHHHHHHHHHHhCCceec
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIS 23 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~ 23 (153)
|||+|||++|+++|.+++++++.
T Consensus 251 PPGTGKTlLAkAiA~e~~~~fi~ 273 (467)
T 4b4t_H 251 PPGTGKTLCARAVANRTDATFIR 273 (467)
T ss_dssp CTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCCcHHHHHHHHHhccCCCeEE
Confidence 89999999999999999988764
No 122
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.50 E-value=4.8e-05 Score=52.71 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.2
Q ss_pred CCCCChHHHHHHHHHHhCCceec
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIS 23 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~ 23 (153)
|||+||||+|+.++..++.+++.
T Consensus 53 ~~GtGKT~la~~la~~~~~~~~~ 75 (257)
T 1lv7_A 53 PPGTGKTLLAKAIAGEAKVPFFT 75 (257)
T ss_dssp CTTSCHHHHHHHHHHHHTCCEEE
T ss_pred cCCCCHHHHHHHHHHHcCCCEEE
Confidence 79999999999999999866554
No 123
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.50 E-value=0.00013 Score=47.77 Aligned_cols=31 Identities=29% Similarity=0.340 Sum_probs=24.5
Q ss_pred CCCCChHHHHHHHHHHh----C--CceechhHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKY----G--YTHISTGDLLREE 31 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~----~--~~~i~~~~l~~~~ 31 (153)
||||||||+++.++..+ | +.+++..+++...
T Consensus 46 ~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~ 82 (180)
T 3ec2_A 46 SPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRL 82 (180)
T ss_dssp SSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 79999999999998877 4 3567777776653
No 124
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.50 E-value=4.5e-05 Score=56.83 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.6
Q ss_pred CCCCChHHHHHHHHHHhCCceech
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIST 24 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~ 24 (153)
|||+|||++|+++|.+++++++.+
T Consensus 224 PPGTGKTlLAkAiA~e~~~~fi~v 247 (437)
T 4b4t_I 224 APGTGKTLLAKAVANQTSATFLRI 247 (437)
T ss_dssp STTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CCCchHHHHHHHHHHHhCCCEEEE
Confidence 899999999999999999887653
No 125
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.47 E-value=1.7e-05 Score=57.76 Aligned_cols=21 Identities=43% Similarity=0.526 Sum_probs=19.9
Q ss_pred CCCCChHHHHHHHHHHhCCce
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTH 21 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~ 21 (153)
||||||||+++.|++.+++.+
T Consensus 32 ~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 32 SPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CTTSSHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhCCCe
Confidence 699999999999999999887
No 126
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.45 E-value=6.1e-05 Score=52.09 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.4
Q ss_pred CCCCChHHHHHHHHHHhCCceec
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIS 23 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~ 23 (153)
|||+||||+|+.++++++.+++.
T Consensus 47 ~~GtGKT~la~~la~~~~~~~~~ 69 (262)
T 2qz4_A 47 PPGCGKTLLAKAVATEAQVPFLA 69 (262)
T ss_dssp CTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCCCHHHHHHHHHHHhCCCEEE
Confidence 79999999999999999876653
No 127
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.41 E-value=6.4e-05 Score=54.80 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=20.8
Q ss_pred CCCCChHHHHHHHHHHhCCceec
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIS 23 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~ 23 (153)
|||+|||++|+.|++.++.+++.
T Consensus 59 ppGtGKT~la~~ia~~~~~~~~~ 81 (363)
T 3hws_A 59 PTGSGKTLLAETLARLLDVPFTM 81 (363)
T ss_dssp CTTSSHHHHHHHHHHHTTCCEEE
T ss_pred CCCCCHHHHHHHHHHHcCCCEEE
Confidence 79999999999999999877764
No 128
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.41 E-value=6.4e-05 Score=56.34 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=22.1
Q ss_pred CCCCChHHHHHHHHHHhCCceechh
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTG 25 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~ 25 (153)
|||+||||+|+.||+.++.+++.++
T Consensus 58 ppGtGKT~lar~lA~~l~~~~~~v~ 82 (444)
T 1g41_A 58 PTGVGKTEIARRLAKLANAPFIKVE 82 (444)
T ss_dssp CTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCHHHHHHHHHHHcCCCceeec
Confidence 7999999999999999998876543
No 129
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.40 E-value=7.1e-05 Score=52.10 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.4
Q ss_pred CCCCChHHHHHHHHHHhCCceec
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIS 23 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~ 23 (153)
|||+||||+|+.++++++.+++.
T Consensus 52 ~~GtGKT~la~~la~~~~~~~~~ 74 (268)
T 2r62_A 52 PPGTGKTLLAKAVAGEAHVPFFS 74 (268)
T ss_dssp SSCSSHHHHHHHHHHHHTCCCCC
T ss_pred CCCCcHHHHHHHHHHHhCCCEEE
Confidence 79999999999999999876654
No 130
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.38 E-value=7.2e-05 Score=52.59 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=19.9
Q ss_pred CCCCChHHHHHHHHHHhCCceec
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIS 23 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~ 23 (153)
||||||||+++.|+..++..++.
T Consensus 52 p~GtGKTtLakala~~~~~~~i~ 74 (274)
T 2x8a_A 52 PPGCGKTLLAKAVANESGLNFIS 74 (274)
T ss_dssp STTSCHHHHHHHHHHHTTCEEEE
T ss_pred CCCCcHHHHHHHHHHHcCCCEEE
Confidence 89999999999999998865543
No 131
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.38 E-value=7.4e-05 Score=53.16 Aligned_cols=32 Identities=28% Similarity=0.315 Sum_probs=25.6
Q ss_pred CCCCChHHHHHHHHHHhCCcee--chhHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHI--STGDLLREEV 32 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i--~~~~l~~~~~ 32 (153)
|||+||||+|+.++..++..++ +..++.....
T Consensus 57 p~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~ 90 (301)
T 3cf0_A 57 PPGCGKTLLAKAIANECQANFISIKGPELLTMWF 90 (301)
T ss_dssp SSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhc
Confidence 7999999999999999987654 5667665544
No 132
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.37 E-value=7.4e-05 Score=52.77 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.8
Q ss_pred CCCCChHHHHHHHHHHhCCcee
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHI 22 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i 22 (153)
|||+||||+|+.+++.++.+++
T Consensus 62 p~GtGKT~la~~la~~~~~~~~ 83 (297)
T 3b9p_A 62 PPGNGKTLLARAVATECSATFL 83 (297)
T ss_dssp SSSSCHHHHHHHHHHHTTCEEE
T ss_pred cCCCCHHHHHHHHHHHhCCCeE
Confidence 7999999999999999987654
No 133
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.36 E-value=0.00041 Score=45.73 Aligned_cols=44 Identities=55% Similarity=0.927 Sum_probs=37.4
Q ss_pred CCCcceeecCCCCCchHHHHHHHHhCCCCeEEEeecCcchhh-hc
Q psy11030 109 PNSKGYLIDGYPREKAQGEQFEREINSPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 109 ~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~vi~l~~~~~~~~-~l 152 (153)
....++++||+|+...+.+.+......++++|++++|.+++. |+
T Consensus 86 ~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~ 130 (196)
T 2c95_A 86 NTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRL 130 (196)
T ss_dssp TTCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHH
T ss_pred ccCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHH
Confidence 345789999999998888877776678999999999999988 75
No 134
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.36 E-value=0.00028 Score=47.68 Aligned_cols=54 Identities=17% Similarity=0.465 Sum_probs=39.0
Q ss_pred HHHHHHhhcCCCCcceeecCCCCCchHHHHHHHH----hCCCCeEEEeecCcchhh-hc
Q psy11030 99 LLGEKVLKELPNSKGYLIDGYPREKAQGEQFERE----INSPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 99 ~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~~~~~----~~~~~~vi~l~~~~~~~~-~l 152 (153)
.+.+++........++++||||+...|++.+... ...||+||++++|.+++. |+
T Consensus 71 ~l~~~l~~~~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~ 129 (220)
T 1aky_A 71 MIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARI 129 (220)
T ss_dssp HHHHHHHHCGGGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHH
T ss_pred HHHHHHHhccccCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHH
Confidence 3445554222334679999999998887765432 357999999999999988 75
No 135
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.34 E-value=6.2e-05 Score=50.59 Aligned_cols=27 Identities=22% Similarity=0.407 Sum_probs=21.8
Q ss_pred CCCCChHHHHHHHHHHhC-----CceechhHH
Q psy11030 1 GPGSGKGTQAEKIVQKYG-----YTHISTGDL 27 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~-----~~~i~~~~l 27 (153)
|+||||||+++.|+..+. ..+++.+..
T Consensus 30 ~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~ 61 (208)
T 3c8u_A 30 APGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61 (208)
T ss_dssp CTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred CCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence 789999999999999885 556666543
No 136
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.33 E-value=9.7e-05 Score=51.83 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.6
Q ss_pred CCCCChHHHHHHHHHHhCCceec
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIS 23 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~ 23 (153)
|||+||||+|+.+++.++.+++.
T Consensus 59 ~~GtGKT~la~~la~~~~~~~~~ 81 (285)
T 3h4m_A 59 PPGTGKTLLAKAVATETNATFIR 81 (285)
T ss_dssp SSSSSHHHHHHHHHHHTTCEEEE
T ss_pred CCCCcHHHHHHHHHHHhCCCEEE
Confidence 79999999999999999877654
No 137
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.33 E-value=8.4e-05 Score=54.98 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=24.2
Q ss_pred CCCCChHHHHHHHHHHhCCceechhH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGD 26 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~ 26 (153)
|+||||||+|..|+++++..++|+|.
T Consensus 10 ptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 10 TTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp CSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cchhhHHHHHHHHHHHCCCeEeecCc
Confidence 78999999999999999998898876
No 138
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.30 E-value=0.00013 Score=51.03 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=20.6
Q ss_pred CCCCChHHHHHHHHHHhCCceec
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIS 23 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~ 23 (153)
|||+|||++|+.+++.++.+++.
T Consensus 72 ~~GtGKT~la~~ia~~~~~~~~~ 94 (272)
T 1d2n_A 72 PPHSGKTALAAKIAEESNFPFIK 94 (272)
T ss_dssp STTSSHHHHHHHHHHHHTCSEEE
T ss_pred CCCCcHHHHHHHHHHHhCCCEEE
Confidence 79999999999999999987654
No 139
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.30 E-value=0.00011 Score=52.83 Aligned_cols=28 Identities=32% Similarity=0.509 Sum_probs=22.9
Q ss_pred CCCCChHHHHHHHHHHhCCcee--chhHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHI--STGDLL 28 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i--~~~~l~ 28 (153)
|||+|||++|+.++++++.+++ +..++.
T Consensus 59 ppGtGKT~la~aia~~~~~~~~~v~~~~l~ 88 (322)
T 3eie_A 59 PPGTGKSYLAKAVATEANSTFFSVSSSDLV 88 (322)
T ss_dssp SSSSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred CCCCcHHHHHHHHHHHHCCCEEEEchHHHh
Confidence 7999999999999999987654 555543
No 140
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.28 E-value=0.00012 Score=50.40 Aligned_cols=20 Identities=45% Similarity=0.642 Sum_probs=18.1
Q ss_pred CCCCChHHHHHHHHHHhCCc
Q psy11030 1 GPGSGKGTQAEKIVQKYGYT 20 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~ 20 (153)
|+||||||+++.|+..+|..
T Consensus 33 ~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 33 GTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp STTSSHHHHHHHHHHHHTGG
T ss_pred CCCCCHHHHHHHHHHHhchh
Confidence 68999999999999988865
No 141
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.27 E-value=3.1e-05 Score=52.04 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=17.0
Q ss_pred CCCCChHHHHHHHHHHhCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGY 19 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~ 19 (153)
|+||||||+++.|++.++.
T Consensus 8 ~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 8 VDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEHHHHHHHHHHHHHE
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999853
No 142
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.26 E-value=0.00012 Score=55.88 Aligned_cols=26 Identities=0% Similarity=0.003 Sum_probs=22.1
Q ss_pred CCCCChHHHHHHHHHHhCC-------ceechhH
Q psy11030 1 GPGSGKGTQAEKIVQKYGY-------THISTGD 26 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~-------~~i~~~~ 26 (153)
+|||||||+|+.|+++++. .+++.|.
T Consensus 403 lsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 403 SLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp TCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred cCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 5899999999999999986 5676655
No 143
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.23 E-value=0.00013 Score=53.30 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=20.4
Q ss_pred CCCCChHHHHHHHHHHhCCceec
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIS 23 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~ 23 (153)
|||+||||+|+.|++.++.+++.
T Consensus 80 p~GtGKT~la~~la~~l~~~~~~ 102 (376)
T 1um8_A 80 PTGSGKTLMAQTLAKHLDIPIAI 102 (376)
T ss_dssp CTTSSHHHHHHHHHHHTTCCEEE
T ss_pred CCCCCHHHHHHHHHHHhCCCEEE
Confidence 79999999999999999876654
No 144
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.23 E-value=0.00011 Score=49.03 Aligned_cols=17 Identities=35% Similarity=0.556 Sum_probs=15.8
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+++.|+..+
T Consensus 14 ~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 14 PSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp STTSCHHHHHHHHHHCT
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 79999999999999876
No 145
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.21 E-value=0.00015 Score=52.82 Aligned_cols=28 Identities=32% Similarity=0.509 Sum_probs=23.0
Q ss_pred CCCCChHHHHHHHHHHhCCcee--chhHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHI--STGDLL 28 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i--~~~~l~ 28 (153)
|||+|||++|+.++++++.+++ +..+++
T Consensus 92 ppGtGKT~la~ala~~~~~~~~~v~~~~l~ 121 (355)
T 2qp9_X 92 PPGTGKSYLAKAVATEANSTFFSVSSSDLV 121 (355)
T ss_dssp STTSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred CCCCcHHHHHHHHHHHhCCCEEEeeHHHHh
Confidence 7999999999999999987765 454543
No 146
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.21 E-value=0.00016 Score=50.00 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=19.5
Q ss_pred CCCCChHHHHHHHHHHhCCceec
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIS 23 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~ 23 (153)
||||||||+++.++..++..++.
T Consensus 57 ~~G~GKTtl~~~i~~~~~~~~i~ 79 (254)
T 1ixz_A 57 PPGVGKTHLARAVAGEARVPFIT 79 (254)
T ss_dssp CTTSSHHHHHHHHHHHTTCCEEE
T ss_pred CCCCCHHHHHHHHHHHhCCCEEE
Confidence 79999999999999988755443
No 147
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.21 E-value=0.00017 Score=51.03 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=19.7
Q ss_pred CCCCChHHHHHHHHHHhCCcee
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHI 22 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i 22 (153)
|||+|||++|+.+++.++.+++
T Consensus 58 ~~GtGKT~la~~la~~l~~~~~ 79 (310)
T 1ofh_A 58 PTGVGKTEIARRLAKLANAPFI 79 (310)
T ss_dssp CTTSSHHHHHHHHHHHHTCCEE
T ss_pred CCCCCHHHHHHHHHHHhCCCEE
Confidence 7999999999999999986654
No 148
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.19 E-value=0.00067 Score=46.04 Aligned_cols=51 Identities=20% Similarity=0.345 Sum_probs=38.9
Q ss_pred HHHHHhhcCCCCcceeecCCCCCchHHHHHHHH----hCCCCeEEEeecCcchhh-hc
Q psy11030 100 LGEKVLKELPNSKGYLIDGYPREKAQGEQFERE----INSPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 100 l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~~~~~----~~~~~~vi~l~~~~~~~~-~l 152 (153)
+..++.... ..++++||||+...+++.+.+. ...||+||++++|++++. |+
T Consensus 68 i~~~l~~~~--g~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl 123 (223)
T 2xb4_A 68 VLETLESKG--KDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRI 123 (223)
T ss_dssp HHHHHHHHC--TTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHH
T ss_pred HHHHHhccc--CCeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHH
Confidence 444454322 5689999999998888877643 247999999999999988 76
No 149
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.19 E-value=0.00061 Score=46.49 Aligned_cols=53 Identities=25% Similarity=0.617 Sum_probs=38.9
Q ss_pred HHHHHHhhcCCCCcceeecCCCCCchHHHHHHHHh----CCCCeEEEeecCcchhh-hc
Q psy11030 99 LLGEKVLKELPNSKGYLIDGYPREKAQGEQFEREI----NSPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 99 ~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~~~~~~----~~~~~vi~l~~~~~~~~-~l 152 (153)
.+..++... ....++++||||++..|++.+.+.+ ..+|+||++++|++++. |+
T Consensus 83 ~i~~~l~~~-~~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl 140 (233)
T 1ak2_A 83 LIEKNLETP-PCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRI 140 (233)
T ss_dssp HHHHHHTSG-GGTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHH
T ss_pred HHHHHHhcc-cccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHH
Confidence 344455432 2346799999999988887665432 46999999999999988 75
No 150
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.18 E-value=0.00062 Score=45.74 Aligned_cols=53 Identities=30% Similarity=0.574 Sum_probs=40.2
Q ss_pred HHHHHHhhcCCCCcceeecCCCCCchHHHHHHHHh----CCCCeEEEeecCcchhh-hc
Q psy11030 99 LLGEKVLKELPNSKGYLIDGYPREKAQGEQFEREI----NSPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 99 ~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~~~~~~----~~~~~vi~l~~~~~~~~-~l 152 (153)
.+.+++... ....++++||||++..+++.+.+.. ..+|.||++++|.+++. ||
T Consensus 67 ~~~~~l~~~-~~~~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl 124 (216)
T 3dl0_A 67 IVKERLGKD-DCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERL 124 (216)
T ss_dssp HHHHHHTSG-GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHH
T ss_pred HHHHHHhcc-cccCCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHH
Confidence 344455432 3357899999999999888876543 36899999999999998 76
No 151
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.17 E-value=0.00019 Score=54.03 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=20.2
Q ss_pred CCCCChHHHHHHHHHHhC--Cceec
Q psy11030 1 GPGSGKGTQAEKIVQKYG--YTHIS 23 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~--~~~i~ 23 (153)
|||+|||++|+.+++.++ ++++.
T Consensus 71 ppGtGKT~la~ala~~l~~~~~~~~ 95 (456)
T 2c9o_A 71 PPGTGKTALALAIAQELGSKVPFCP 95 (456)
T ss_dssp CTTSSHHHHHHHHHHHHCTTSCEEE
T ss_pred CCcCCHHHHHHHHHHHhCCCceEEE
Confidence 899999999999999998 66554
No 152
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.16 E-value=0.00089 Score=44.18 Aligned_cols=43 Identities=47% Similarity=0.900 Sum_probs=36.6
Q ss_pred CCcceeecCCCCCchHHHHHHHHhCCCCeEEEeecCcchhh-hc
Q psy11030 110 NSKGYLIDGYPREKAQGEQFEREINSPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 110 ~~~~~~~dg~~~~~~~~~~~~~~~~~~~~vi~l~~~~~~~~-~l 152 (153)
....+++||+|....++..+...+..+|++|++++|.+++. |+
T Consensus 90 ~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~ 133 (199)
T 2bwj_A 90 DTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRL 133 (199)
T ss_dssp SCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHH
T ss_pred cCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHH
Confidence 45678999999998888888766668999999999999988 75
No 153
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.16 E-value=0.00024 Score=51.26 Aligned_cols=21 Identities=33% Similarity=0.346 Sum_probs=18.7
Q ss_pred CCCCChHHHHHHHHHHhCCce
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTH 21 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~ 21 (153)
|||+||||+++.++..++..+
T Consensus 59 p~G~GKTTLa~~ia~~l~~~~ 79 (334)
T 1in4_A 59 PPGLGKTTLAHIIASELQTNI 79 (334)
T ss_dssp STTSSHHHHHHHHHHHHTCCE
T ss_pred CCCCcHHHHHHHHHHHhCCCE
Confidence 799999999999999997643
No 154
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.14 E-value=0.00017 Score=48.53 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=16.5
Q ss_pred CCCCChHHHHHHHHHHhC
Q psy11030 1 GPGSGKGTQAEKIVQKYG 18 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~ 18 (153)
|+||||||+++.|+..+.
T Consensus 16 psGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 16 PSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CTTSCHHHHHHHHHHSTT
T ss_pred cCCCCHHHHHHHHHhhCC
Confidence 799999999999999874
No 155
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.14 E-value=0.00018 Score=51.71 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.1
Q ss_pred CCCCChHHHHHHHHHHh-CCcee
Q psy11030 1 GPGSGKGTQAEKIVQKY-GYTHI 22 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~-~~~~i 22 (153)
|||+|||++|+.+++++ +..++
T Consensus 53 ppGtGKT~la~ala~~~~~~~~~ 75 (322)
T 1xwi_A 53 PPGTGKSYLAKAVATEANNSTFF 75 (322)
T ss_dssp SSSSCHHHHHHHHHHHTTSCEEE
T ss_pred CCCccHHHHHHHHHHHcCCCcEE
Confidence 79999999999999998 65554
No 156
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.13 E-value=0.0002 Score=51.53 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=22.6
Q ss_pred CCCCChHHHHHHHHHHhC-------CceechhHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYG-------YTHISTGDLL 28 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~-------~~~i~~~~l~ 28 (153)
|+||||||+++.|+..++ +.+++.|.+.
T Consensus 100 psGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~ 134 (321)
T 3tqc_A 100 SVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL 134 (321)
T ss_dssp CTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence 789999999999998875 4557777654
No 157
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.12 E-value=0.0005 Score=45.68 Aligned_cols=31 Identities=23% Similarity=0.232 Sum_probs=24.0
Q ss_pred CCCCChHHHHHHHHHHh---CC--ceechhHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKY---GY--THISTGDLLREE 31 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~---~~--~~i~~~~l~~~~ 31 (153)
|||+||||+++.++..+ +. .++++.+++...
T Consensus 62 ~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~ 97 (202)
T 2w58_A 62 SFGVGKTYLLAAIANELAKRNVSSLIVYVPELFREL 97 (202)
T ss_dssp STTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHH
Confidence 79999999999999987 33 346777766554
No 158
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.11 E-value=0.00021 Score=46.93 Aligned_cols=18 Identities=17% Similarity=0.316 Sum_probs=16.0
Q ss_pred CCCCChHHHHHHHHHHhC
Q psy11030 1 GPGSGKGTQAEKIVQKYG 18 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~ 18 (153)
|+||||||+++.|+..+.
T Consensus 13 psGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 13 AHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CTTSSHHHHHHHHHHHCT
T ss_pred CCCCCHHHHHHHHHhhCC
Confidence 789999999999998763
No 159
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.07 E-value=0.00026 Score=53.58 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.8
Q ss_pred CCCCChHHHHHHHHHHhCCceec
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIS 23 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~ 23 (153)
|||+||||+|+.++.+++.+++.
T Consensus 57 ppGtGKT~Laraia~~~~~~f~~ 79 (476)
T 2ce7_A 57 PPGTGKTLLARAVAGEANVPFFH 79 (476)
T ss_dssp CTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCCCHHHHHHHHHHHcCCCeee
Confidence 79999999999999999887654
No 160
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.06 E-value=0.00027 Score=49.57 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=19.5
Q ss_pred CCCCChHHHHHHHHHHhCCceec
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIS 23 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~ 23 (153)
||||||||+++.|+..++..++.
T Consensus 81 p~GtGKTtl~~~i~~~~~~~~i~ 103 (278)
T 1iy2_A 81 PPGVGKTHLARAVAGEARVPFIT 103 (278)
T ss_dssp CTTSSHHHHHHHHHHHTTCCEEE
T ss_pred CCcChHHHHHHHHHHHcCCCEEE
Confidence 79999999999999988655543
No 161
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.06 E-value=0.00025 Score=51.66 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=20.0
Q ss_pred CCCCChHHHHHHHHHHhCCcee
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHI 22 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i 22 (153)
|||+||||+|+.+++.++.+++
T Consensus 125 ppGtGKT~la~aia~~~~~~~~ 146 (357)
T 3d8b_A 125 PPGTGKTLIGKCIASQSGATFF 146 (357)
T ss_dssp STTSSHHHHHHHHHHHTTCEEE
T ss_pred CCCCCHHHHHHHHHHHcCCeEE
Confidence 7999999999999999987665
No 162
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.03 E-value=0.00061 Score=48.72 Aligned_cols=31 Identities=23% Similarity=0.291 Sum_probs=24.3
Q ss_pred CCCCChHHHHHHHHHHh---CC--ceechhHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKY---GY--THISTGDLLREE 31 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~---~~--~~i~~~~l~~~~ 31 (153)
|||+||||+++.+++.+ +. .++++.++....
T Consensus 45 ~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~ 80 (324)
T 1l8q_A 45 SVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAM 80 (324)
T ss_dssp SSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHH
Confidence 79999999999999987 54 456777765443
No 163
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.01 E-value=0.00036 Score=45.42 Aligned_cols=17 Identities=35% Similarity=0.589 Sum_probs=16.0
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+||||+++.+++.+
T Consensus 51 ~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 51 EPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999999986
No 164
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.01 E-value=0.00031 Score=49.78 Aligned_cols=17 Identities=41% Similarity=0.552 Sum_probs=16.2
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+|||++|+.+++.+
T Consensus 75 ~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 75 NPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999999988
No 165
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=97.00 E-value=0.0045 Score=44.87 Aligned_cols=18 Identities=17% Similarity=0.017 Sum_probs=16.4
Q ss_pred CCCeEEEeecCcchhh-hc
Q psy11030 135 SPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 135 ~~~~vi~l~~~~~~~~-~l 152 (153)
.||++|+++++.++.. |+
T Consensus 166 ~PDltI~Ld~~pe~~l~RI 184 (341)
T 1osn_A 166 PGTNLVVCTVSLPSHLSRV 184 (341)
T ss_dssp SCCEEEEEECCHHHHHHHC
T ss_pred CCCeEEEEeCCHHHHHHHH
Confidence 6999999999999988 76
No 166
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.00 E-value=0.0002 Score=57.36 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=23.2
Q ss_pred CCCCChHHHHHHHHHHhCCceec--hhHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIS--TGDLL 28 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~--~~~l~ 28 (153)
|||+|||++|+.+|.++|.+++. ..+++
T Consensus 246 PPGTGKT~LAraiA~elg~~~~~v~~~~l~ 275 (806)
T 3cf2_A 246 PPGTGKTLIARAVANETGAFFFLINGPEIM 275 (806)
T ss_dssp CTTSCHHHHHHHHHTTTTCEEEEEEHHHHH
T ss_pred CCCCCHHHHHHHHHHHhCCeEEEEEhHHhh
Confidence 89999999999999999987654 44443
No 167
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.99 E-value=0.00037 Score=45.85 Aligned_cols=20 Identities=45% Similarity=0.710 Sum_probs=17.8
Q ss_pred CCCCChHHHHHHHHHHhCCc
Q psy11030 1 GPGSGKGTQAEKIVQKYGYT 20 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~ 20 (153)
|+||||||+.+.|+..+++.
T Consensus 8 ~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 8 EPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp CTTSSHHHHHHHHHHHHGGG
T ss_pred CCCCCHHHHHHHHHHHhCCc
Confidence 79999999999999988744
No 168
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.98 E-value=0.00026 Score=45.99 Aligned_cols=17 Identities=35% Similarity=0.526 Sum_probs=16.0
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+||||+++.+++.+
T Consensus 51 ~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 51 DPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CGGGCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 78999999999999987
No 169
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.97 E-value=0.00041 Score=47.56 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=17.4
Q ss_pred CCCCChHHHHHHHHHHh-CCc
Q psy11030 1 GPGSGKGTQAEKIVQKY-GYT 20 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~-~~~ 20 (153)
++||||||+++.|++.+ +..
T Consensus 10 ~~g~GKtt~~~~l~~~l~~~~ 30 (241)
T 2ocp_A 10 NIAVGKSTFVKLLTKTYPEWH 30 (241)
T ss_dssp CTTSSHHHHHHHHHHHCTTSE
T ss_pred CCCCCHHHHHHHHHHHcCCCe
Confidence 58999999999999998 443
No 170
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.97 E-value=0.00026 Score=47.47 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.0
Q ss_pred CCCCChHHHHHHHHHHhCCceechhH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGD 26 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~ 26 (153)
|+||||||+|..|+++.+ .+++.|.
T Consensus 42 psGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 42 DSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp CCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred CCCCCHHHHHHHHHHhCC-eEEecch
Confidence 799999999999999866 7776654
No 171
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.94 E-value=0.00037 Score=50.04 Aligned_cols=23 Identities=26% Similarity=0.179 Sum_probs=20.3
Q ss_pred CCCCChHHHHHHHHHHhCCceec
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIS 23 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~ 23 (153)
|||+|||++|+.+++.++.+++.
T Consensus 63 ~~GtGKT~la~~ia~~~~~~~~~ 85 (338)
T 3pfi_A 63 PAGLGKTTLANIISYEMSANIKT 85 (338)
T ss_dssp STTSSHHHHHHHHHHHTTCCEEE
T ss_pred cCCCCHHHHHHHHHHHhCCCeEE
Confidence 79999999999999999876654
No 172
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.94 E-value=0.00035 Score=47.06 Aligned_cols=23 Identities=17% Similarity=0.089 Sum_probs=19.6
Q ss_pred CCCCChHHHHHHHHHHhCCceec
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIS 23 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~ 23 (153)
|||+||||+|..|++.++-.+++
T Consensus 66 PPGtGKTt~a~ala~~l~g~i~~ 88 (212)
T 1tue_A 66 PANTGKSYFGMSFIHFIQGAVIS 88 (212)
T ss_dssp CGGGCHHHHHHHHHHHHTCEECC
T ss_pred CCCCCHHHHHHHHHHHhCCCeee
Confidence 89999999999999998655544
No 173
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.93 E-value=0.00038 Score=51.20 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.5
Q ss_pred CCCCChHHHHHHHHHHhCCceec
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIS 23 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~ 23 (153)
|||+|||++|+.++++++.+++.
T Consensus 156 ppGtGKT~la~aia~~~~~~~~~ 178 (389)
T 3vfd_A 156 PPGNGKTMLAKAVAAESNATFFN 178 (389)
T ss_dssp STTSCHHHHHHHHHHHTTCEEEE
T ss_pred CCCCCHHHHHHHHHHhhcCcEEE
Confidence 79999999999999999877653
No 174
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.92 E-value=0.00091 Score=44.89 Aligned_cols=53 Identities=25% Similarity=0.479 Sum_probs=39.7
Q ss_pred HHHHHHhhcCCCCcceeecCCCCCchHHHHHHHHh----CCCCeEEEeecCcchhh-hc
Q psy11030 99 LLGEKVLKELPNSKGYLIDGYPREKAQGEQFEREI----NSPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 99 ~l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~~~~~~----~~~~~vi~l~~~~~~~~-~l 152 (153)
.+.+++.. .....++++||||+...+++.+.+.. ..+|.||++++|.+++. ||
T Consensus 67 ~~~~~l~~-~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl 124 (216)
T 3fb4_A 67 IVHERLSK-DDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRL 124 (216)
T ss_dssp HHHHHHTS-GGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHH
T ss_pred HHHHHHhc-ccCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHH
Confidence 34444443 23356899999999999888876543 35899999999999988 76
No 175
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.90 E-value=0.0004 Score=53.05 Aligned_cols=23 Identities=39% Similarity=0.650 Sum_probs=20.7
Q ss_pred CCCCChHHHHHHHHHHhCCceec
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIS 23 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~ 23 (153)
|||+||||+|+.+++++|+.++.
T Consensus 85 ppGtGKTtla~~la~~l~~~~i~ 107 (516)
T 1sxj_A 85 PPGIGKTTAAHLVAQELGYDILE 107 (516)
T ss_dssp STTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCCCCHHHHHHHHHHHcCCCEEE
Confidence 79999999999999999887654
No 176
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.83 E-value=0.00044 Score=45.01 Aligned_cols=29 Identities=34% Similarity=0.361 Sum_probs=19.6
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEV 32 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l~~~~~ 32 (153)
|+||||||+++.+.. +...++.+ .++..+
T Consensus 17 ~nGsGKSTl~~~~~~--~~~~~~~d-~~~g~~ 45 (171)
T 4gp7_A 17 SSGSGKSTFAKKHFK--PTEVISSD-FCRGLM 45 (171)
T ss_dssp CTTSCHHHHHHHHSC--GGGEEEHH-HHHHHH
T ss_pred CCCCCHHHHHHHHcc--CCeEEccH-HHHHHh
Confidence 799999999997542 45556554 444444
No 177
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.82 E-value=0.00049 Score=51.64 Aligned_cols=31 Identities=32% Similarity=0.457 Sum_probs=20.9
Q ss_pred CCCCChHHHHHHHHHHh-CCce--echhHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKY-GYTH--ISTGDLLREE 31 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~-~~~~--i~~~~l~~~~ 31 (153)
|||+|||++|+.++..+ +.++ ++..+++...
T Consensus 175 ppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~ 208 (444)
T 2zan_A 175 PPGTGKSYLAKAVATEANNSTFFSISSSDLVSKW 208 (444)
T ss_dssp STTSSHHHHHHHHHHHCCSSEEEEECCC------
T ss_pred CCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhh
Confidence 79999999999999998 6554 4666665543
No 178
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.82 E-value=0.00052 Score=51.57 Aligned_cols=24 Identities=33% Similarity=0.307 Sum_probs=20.9
Q ss_pred CCCCChHHHHHHHHHHhCCceech
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIST 24 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~ 24 (153)
|||+||||+|+.|++.++..++.+
T Consensus 58 ppGtGKTtlAr~ia~~~~~~f~~l 81 (447)
T 3pvs_A 58 PPGTGKTTLAEVIARYANADVERI 81 (447)
T ss_dssp STTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCcHHHHHHHHHHHhCCCeEEE
Confidence 799999999999999998766543
No 179
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.81 E-value=0.00033 Score=44.70 Aligned_cols=17 Identities=24% Similarity=0.306 Sum_probs=15.9
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+++.++..+
T Consensus 44 ~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 44 EEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp SSTTTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999999977
No 180
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.79 E-value=0.00078 Score=49.51 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=20.3
Q ss_pred CCCCChHHHHHHHHHHhCCceec
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIS 23 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~ 23 (153)
||||||||+++.|+..++..++.
T Consensus 177 ~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 177 PIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp STTSSHHHHHHHHHHHHCCEEEC
T ss_pred CCCCCHHHHHHHHHhhcCCcEEE
Confidence 79999999999999988776655
No 181
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.79 E-value=0.00056 Score=52.10 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=19.9
Q ss_pred CCCCChHHHHHHHHHHhCCceec
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIS 23 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~ 23 (153)
|||+||||+++.++...+.+++.
T Consensus 72 ppGtGKTtLaraIa~~~~~~~i~ 94 (499)
T 2dhr_A 72 PPGVGKTHLARAVAGEARVPFIT 94 (499)
T ss_dssp SSSSSHHHHHHHHHHHTTCCEEE
T ss_pred CCCCCHHHHHHHHHHHhCCCEEE
Confidence 79999999999999998766543
No 182
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.77 E-value=0.00062 Score=43.02 Aligned_cols=17 Identities=35% Similarity=0.401 Sum_probs=15.4
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+|||++|+.+++..
T Consensus 32 ~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 32 APGTGRMTGARYLHQFG 48 (145)
T ss_dssp STTSSHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 79999999999998864
No 183
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.76 E-value=0.00053 Score=48.97 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.2
Q ss_pred CCCCChHHHHHHHHHHhCCceec
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIS 23 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~ 23 (153)
|||+||||+++.+++.++..++.
T Consensus 56 ~~G~GKT~la~~la~~l~~~~~~ 78 (324)
T 3u61_B 56 SPGTGKTTVAKALCHDVNADMMF 78 (324)
T ss_dssp STTSSHHHHHHHHHHHTTEEEEE
T ss_pred cCCCCHHHHHHHHHHHhCCCEEE
Confidence 69999999999999999876654
No 184
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.74 E-value=0.00076 Score=44.94 Aligned_cols=17 Identities=35% Similarity=0.499 Sum_probs=15.5
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+.+.|...+
T Consensus 12 psGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 12 PSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 78999999999998865
No 185
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.74 E-value=0.00073 Score=47.91 Aligned_cols=29 Identities=24% Similarity=0.199 Sum_probs=22.4
Q ss_pred CCCCChHHHHHHHHHHhC-------Ccee-chhHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYG-------YTHI-STGDLLR 29 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~-------~~~i-~~~~l~~ 29 (153)
|+||||||+++.|+..++ ...+ +.|+++.
T Consensus 39 ~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~ 75 (290)
T 1odf_A 39 PQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYL 75 (290)
T ss_dssp CTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBC
T ss_pred CCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccC
Confidence 689999999999999885 3345 7776543
No 186
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.74 E-value=0.00073 Score=45.74 Aligned_cols=28 Identities=14% Similarity=-0.002 Sum_probs=21.4
Q ss_pred CCCCChHHHHHHHHHHhC-----CceechhHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYG-----YTHISTGDLL 28 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~-----~~~i~~~~l~ 28 (153)
|||+||||+++.+++.++ +.+++.+++.
T Consensus 60 ~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~ 92 (242)
T 3bos_A 60 PVKSGRTHLIHAACARANELERRSFYIPLGIHA 92 (242)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGG
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 799999999999998874 3456665543
No 187
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.72 E-value=0.00087 Score=47.71 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=19.5
Q ss_pred CCCCChHHHHHHHHHHhCCcee
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHI 22 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i 22 (153)
|||+||||+|+.+++.++.+++
T Consensus 46 ~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 46 PPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp CTTCCCHHHHHHHHHHHTCCEE
T ss_pred CCCCCHHHHHHHHHHHhCCCEE
Confidence 7999999999999999987654
No 188
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.69 E-value=0.00051 Score=49.26 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=19.4
Q ss_pred CCCCChHHHHHHHHHHhCCcee
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHI 22 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i 22 (153)
|||+|||++|+.+++.++.+++
T Consensus 54 ~pGtGKT~la~~la~~~~~~~~ 75 (331)
T 2r44_A 54 VPGLAKTLSVNTLAKTMDLDFH 75 (331)
T ss_dssp CCCHHHHHHHHHHHHHTTCCEE
T ss_pred CCCCcHHHHHHHHHHHhCCCeE
Confidence 7999999999999999986543
No 189
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.69 E-value=0.00047 Score=53.13 Aligned_cols=29 Identities=24% Similarity=0.248 Sum_probs=23.0
Q ss_pred CCCCChHHHHHHHHHHhC------CceechhHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYG------YTHISTGDLLR 29 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~------~~~i~~~~l~~ 29 (153)
++||||||+++.|+..++ +.+++.+++..
T Consensus 377 ~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~ 411 (552)
T 3cr8_A 377 LSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRR 411 (552)
T ss_dssp SSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHH
T ss_pred CCCChHHHHHHHHHHhhcccCCceEEEECCcHHHH
Confidence 689999999999999984 44577766543
No 190
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.68 E-value=0.00066 Score=54.48 Aligned_cols=30 Identities=30% Similarity=0.382 Sum_probs=24.6
Q ss_pred CCCCChHHHHHHHHHHhCCcee--chhHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHI--STGDLLRE 30 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i--~~~~l~~~ 30 (153)
|||+|||.+|+.+|.+++.+++ +..+++..
T Consensus 519 PPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~ 550 (806)
T 3cf2_A 519 PPGCGKTLLAKAIANECQANFISIKGPELLTM 550 (806)
T ss_dssp STTSSHHHHHHHHHHTTTCEEEECCHHHHHTT
T ss_pred CCCCCchHHHHHHHHHhCCceEEeccchhhcc
Confidence 8999999999999999998776 44555544
No 191
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.64 E-value=0.0009 Score=44.76 Aligned_cols=18 Identities=11% Similarity=0.324 Sum_probs=16.4
Q ss_pred CCCCChHHHHHHHHHHhC
Q psy11030 1 GPGSGKGTQAEKIVQKYG 18 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~ 18 (153)
|+||||||+++.|.+.+.
T Consensus 27 PSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 27 ASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CTTSSHHHHHHHHHHHCT
T ss_pred cCCCCHHHHHHHHHhhCC
Confidence 799999999999998764
No 192
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.61 E-value=0.0038 Score=42.28 Aligned_cols=50 Identities=24% Similarity=0.441 Sum_probs=38.3
Q ss_pred HHHHHhhcCCCCcceeecCCCCCchHHHHHHHHhCCCCeEEEeecCcchhh-hc
Q psy11030 100 LGEKVLKELPNSKGYLIDGYPREKAQGEQFEREINSPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 100 l~~Rl~~R~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~vi~l~~~~~~~~-~l 152 (153)
+.+++.+. ...++++||||++..|++.+... ..+|++|+|++|.+++. |+
T Consensus 75 ~~~~l~~~--~~~~~vid~~~~~~~~~~~l~~~-~~~~~vi~L~~~~~~~~~R~ 125 (227)
T 1zd8_A 75 ALHELKNL--TQYSWLLDGFPRTLPQAEALDRA-YQIDTVINLNVPFEVIKQRL 125 (227)
T ss_dssp HHHHHHTC--TTSCEEEESCCCSHHHHHHHHTT-SCCCEEEEEECCHHHHHHHH
T ss_pred HHHHHhcc--cCCCEEEeCCCCCHHHHHHHHHh-cCCCEEEEEECCHHHHHHHH
Confidence 44555531 34678899999998887777653 57899999999999988 75
No 193
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.61 E-value=0.00082 Score=51.06 Aligned_cols=28 Identities=21% Similarity=0.415 Sum_probs=22.9
Q ss_pred CCCCChHHHHHHHHHHhCCcee--chhHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHI--STGDLL 28 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i--~~~~l~ 28 (153)
|||+|||++|+.++++++.+++ +..++.
T Consensus 246 ppGtGKT~lAraia~~~~~~fv~vn~~~l~ 275 (489)
T 3hu3_A 246 PPGTGKTLIARAVANETGAFFFLINGPEIM 275 (489)
T ss_dssp STTSSHHHHHHHHHHHCSSEEEEEEHHHHH
T ss_pred cCCCCHHHHHHHHHHHhCCCEEEEEchHhh
Confidence 7999999999999999987665 555554
No 194
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.56 E-value=0.0011 Score=50.94 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=19.3
Q ss_pred CCCCChHHHHHHHHHHhCCcee
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHI 22 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i 22 (153)
|||+||||+++.|+..++.+++
T Consensus 116 p~GtGKTtlar~ia~~l~~~~~ 137 (543)
T 3m6a_A 116 PPGVGKTSLAKSIAKSLGRKFV 137 (543)
T ss_dssp SSSSSHHHHHHHHHHHHTCEEE
T ss_pred CCCCCHHHHHHHHHHhcCCCeE
Confidence 8999999999999999876543
No 195
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.55 E-value=0.001 Score=53.47 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=20.2
Q ss_pred CCCCChHHHHHHHHHHhCCceec
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIS 23 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~ 23 (153)
|||+||||+|+.++..++..++.
T Consensus 519 ppGtGKT~Lakala~~~~~~~i~ 541 (806)
T 1ypw_A 519 PPGCGKTLLAKAIANECQANFIS 541 (806)
T ss_dssp CTTSSHHHHHHHHHHHHTCCCCC
T ss_pred CCCCCHHHHHHHHHHHhCCCEEE
Confidence 79999999999999999766554
No 196
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.54 E-value=0.0016 Score=46.49 Aligned_cols=32 Identities=13% Similarity=0.099 Sum_probs=24.4
Q ss_pred CCCCChHHHHHHHHHHhC----C--ceechhHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKYG----Y--THISTGDLLREEV 32 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~----~--~~i~~~~l~~~~~ 32 (153)
|||+|||++|..++..+. . .++++.+++.+..
T Consensus 160 ~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~ 197 (308)
T 2qgz_A 160 DMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVK 197 (308)
T ss_dssp STTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHH
Confidence 799999999999998653 3 3467877776643
No 197
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.54 E-value=0.00073 Score=44.53 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=18.4
Q ss_pred CCCCChHHHHHHHHHHhCCc--eech
Q psy11030 1 GPGSGKGTQAEKIVQKYGYT--HIST 24 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~--~i~~ 24 (153)
++||||||+|..|+.. +.+ |+.+
T Consensus 7 g~~SGKS~~A~~la~~-~~~~~yiaT 31 (180)
T 1c9k_A 7 GARSGKSRHAEALIGD-APQVLYIAT 31 (180)
T ss_dssp CTTSSHHHHHHHHHCS-CSSEEEEEC
T ss_pred CCCCcHHHHHHHHHhc-CCCeEEEec
Confidence 6899999999999987 654 4444
No 198
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.54 E-value=0.0012 Score=47.84 Aligned_cols=19 Identities=37% Similarity=0.524 Sum_probs=17.7
Q ss_pred CCCCChHHHHHHHHHHhCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGY 19 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~ 19 (153)
|||+|||++|+.+++.++.
T Consensus 78 ppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 78 QPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp STTSSHHHHHHHHHHHHCS
T ss_pred CCCCCHHHHHHHHHHHhcc
Confidence 7999999999999999974
No 199
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.52 E-value=0.0024 Score=47.85 Aligned_cols=31 Identities=23% Similarity=0.272 Sum_probs=24.1
Q ss_pred CCCCChHHHHHHHHHHh-----CC--ceechhHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQKY-----GY--THISTGDLLREE 31 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~-----~~--~~i~~~~l~~~~ 31 (153)
|||+||||+++.++..+ +. .+++..++..+.
T Consensus 138 p~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~ 175 (440)
T 2z4s_A 138 GVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDL 175 (440)
T ss_dssp SSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHH
Confidence 79999999999999977 43 456777765543
No 200
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.52 E-value=0.0014 Score=49.56 Aligned_cols=17 Identities=41% Similarity=0.610 Sum_probs=16.2
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+|||++++.|++.+
T Consensus 209 ~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 209 EPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp CTTTTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999999997
No 201
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.50 E-value=0.0011 Score=48.07 Aligned_cols=17 Identities=24% Similarity=0.421 Sum_probs=16.1
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+||||+++.+++.+
T Consensus 52 ~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 52 LTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999999987
No 202
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.50 E-value=0.0013 Score=47.10 Aligned_cols=17 Identities=24% Similarity=0.216 Sum_probs=15.7
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+++.|+..+
T Consensus 98 ~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 98 SVAVGKSTTARVLQALL 114 (312)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhhc
Confidence 78999999999999876
No 203
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.47 E-value=0.0029 Score=41.93 Aligned_cols=42 Identities=26% Similarity=0.644 Sum_probs=33.6
Q ss_pred CcceeecCCCCCchHHHHHHHHh----CCCCeEEEeecCcchhh-hc
Q psy11030 111 SKGYLIDGYPREKAQGEQFEREI----NSPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 111 ~~~~~~dg~~~~~~~~~~~~~~~----~~~~~vi~l~~~~~~~~-~l 152 (153)
..++++||+|+...+++.+...+ ..++++|++++|.+++. |+
T Consensus 98 ~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl 144 (201)
T 2cdn_A 98 ANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERL 144 (201)
T ss_dssp TTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHH
Confidence 45789999999988777665433 35899999999999988 75
No 204
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.45 E-value=0.0015 Score=43.42 Aligned_cols=17 Identities=29% Similarity=0.542 Sum_probs=15.7
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+||||+++.+++.+
T Consensus 46 ~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 46 PPGTGKTATAIALARDL 62 (226)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999999876
No 205
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.44 E-value=0.0013 Score=44.47 Aligned_cols=17 Identities=35% Similarity=0.724 Sum_probs=15.5
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+.+.|+..+
T Consensus 31 psGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 31 PSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp STTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 78999999999999865
No 206
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.42 E-value=0.0012 Score=53.17 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.2
Q ss_pred CCCCChHHHHHHHHHHhCCceec
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIS 23 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~ 23 (153)
||||||||+|+.|+..++..++.
T Consensus 246 p~GtGKTtLarala~~l~~~~i~ 268 (806)
T 1ypw_A 246 PPGTGKTLIARAVANETGAFFFL 268 (806)
T ss_dssp CTTSSHHHHHHHHHHTTTCEEEE
T ss_pred cCCCCHHHHHHHHHHHcCCcEEE
Confidence 79999999999999999876554
No 207
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.42 E-value=0.0016 Score=43.86 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=16.9
Q ss_pred CCCCChHHHHHHHHHHhCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGY 19 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~ 19 (153)
|||+||||+++.+++.++.
T Consensus 53 ~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 53 TRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp STTSCHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhcC
Confidence 7999999999999998743
No 208
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.41 E-value=0.0016 Score=47.37 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=16.0
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+||||+++.+++.+
T Consensus 53 ~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 53 LTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999999987
No 209
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.40 E-value=0.0016 Score=46.09 Aligned_cols=17 Identities=24% Similarity=0.347 Sum_probs=16.2
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+||||+|+.|++.+
T Consensus 55 ~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 55 PTGVGKTELAKTLAATL 71 (311)
T ss_dssp CSSSSHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHH
Confidence 79999999999999987
No 210
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.38 E-value=0.0019 Score=42.13 Aligned_cols=17 Identities=41% Similarity=0.212 Sum_probs=15.3
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
++||||||++..|...+
T Consensus 12 ~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 12 YKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 58999999999999876
No 211
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.38 E-value=0.0015 Score=43.67 Aligned_cols=17 Identities=18% Similarity=0.231 Sum_probs=15.5
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+.+.|+..+
T Consensus 28 pnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 28 PSAVGKSTVVRCLRERI 44 (207)
T ss_dssp STTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 78999999999998866
No 212
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.37 E-value=0.00034 Score=44.19 Aligned_cols=26 Identities=15% Similarity=0.029 Sum_probs=19.1
Q ss_pred CCCCChHHHHHHHHHHhC-CceechhH
Q psy11030 1 GPGSGKGTQAEKIVQKYG-YTHISTGD 26 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~-~~~i~~~~ 26 (153)
|||+|||++|+.+++..+ +.++++.+
T Consensus 35 ~~GtGKt~lA~~i~~~~~~~~~~~~~~ 61 (143)
T 3co5_A 35 EAGSPFETVARYFHKNGTPWVSPARVE 61 (143)
T ss_dssp ETTCCHHHHHGGGCCTTSCEECCSSTT
T ss_pred CCCccHHHHHHHHHHhCCCeEEechhh
Confidence 699999999999988765 33344433
No 213
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.37 E-value=0.0041 Score=40.59 Aligned_cols=43 Identities=30% Similarity=0.788 Sum_probs=35.2
Q ss_pred CCcceeecCCCCCchHHHHHHHHhC---CCCeEEEeecCcchhh-hc
Q psy11030 110 NSKGYLIDGYPREKAQGEQFEREIN---SPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 110 ~~~~~~~dg~~~~~~~~~~~~~~~~---~~~~vi~l~~~~~~~~-~l 152 (153)
....+++||+|+...++..+..... .+|++|++++|.+++. |+
T Consensus 82 ~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~ 128 (194)
T 1qf9_A 82 QGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRL 128 (194)
T ss_dssp TTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHH
T ss_pred CCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHH
Confidence 4567889999999888777765444 6899999999999988 75
No 214
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.36 E-value=0.00084 Score=45.69 Aligned_cols=17 Identities=35% Similarity=0.534 Sum_probs=9.5
Q ss_pred CCCCChHHHHHHHH-HHh
Q psy11030 1 GPGSGKGTQAEKIV-QKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~-~~~ 17 (153)
|+||||||+++.|+ ..+
T Consensus 35 p~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 35 PSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp SCC----CHHHHHHC---
T ss_pred CCCCCHHHHHHHHHhcCC
Confidence 78999999999999 655
No 215
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.36 E-value=0.0015 Score=44.07 Aligned_cols=17 Identities=29% Similarity=0.259 Sum_probs=15.0
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+++.|+..+
T Consensus 33 ~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 33 EFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp STTSSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999998743
No 216
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.32 E-value=0.0019 Score=46.77 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=16.0
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+||||+++.+++.+
T Consensus 53 ~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 53 LTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999999987
No 217
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.28 E-value=0.0017 Score=44.29 Aligned_cols=14 Identities=43% Similarity=0.748 Sum_probs=13.2
Q ss_pred CCCCChHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIV 14 (153)
Q Consensus 1 ppGsGKst~a~~L~ 14 (153)
|+||||||+++.|+
T Consensus 38 pnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 38 GTGTGKTTFAAQFI 51 (251)
T ss_dssp CTTSSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH
Confidence 79999999999888
No 218
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.28 E-value=0.002 Score=46.43 Aligned_cols=17 Identities=24% Similarity=0.513 Sum_probs=16.0
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+||||+++.+++.+
T Consensus 54 p~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 54 PPGTGKTSTIVALAREI 70 (340)
T ss_dssp SSSSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999999986
No 219
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.27 E-value=0.0019 Score=43.85 Aligned_cols=18 Identities=17% Similarity=0.372 Sum_probs=16.0
Q ss_pred CCCCChHHHHHHHHHHhC
Q psy11030 1 GPGSGKGTQAEKIVQKYG 18 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~ 18 (153)
|+||||||+.+.|+..+.
T Consensus 24 psGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 24 PSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CTTSCHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHhccCC
Confidence 789999999999988764
No 220
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.22 E-value=0.0024 Score=43.02 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=14.8
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
||||||||+++.++..+
T Consensus 31 ~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 31 EPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 78999999999998654
No 221
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.22 E-value=0.0015 Score=45.30 Aligned_cols=18 Identities=22% Similarity=0.242 Sum_probs=16.2
Q ss_pred CCCCChHHHHHHHHHHhC
Q psy11030 1 GPGSGKGTQAEKIVQKYG 18 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~ 18 (153)
|||+|||++|+.+++..+
T Consensus 37 ~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 37 ERGTGKELIASRLHYLSS 54 (265)
T ss_dssp CTTSCHHHHHHHHHHTST
T ss_pred CCCCcHHHHHHHHHHhcC
Confidence 799999999999998763
No 222
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.22 E-value=0.0024 Score=50.95 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=20.6
Q ss_pred CCCCChHHHHHHHHHHh----------CCceechh
Q psy11030 1 GPGSGKGTQAEKIVQKY----------GYTHISTG 25 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~----------~~~~i~~~ 25 (153)
|||+|||++|+.|++.+ +..++.++
T Consensus 209 ~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 243 (758)
T 3pxi_A 209 EPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (758)
T ss_dssp CTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred CCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEec
Confidence 79999999999999997 66666543
No 223
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.16 E-value=0.0028 Score=42.04 Aligned_cols=17 Identities=35% Similarity=0.436 Sum_probs=15.7
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+.+.|+..+
T Consensus 9 ~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 9 PPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCSSCHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHhhc
Confidence 68999999999999877
No 224
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.15 E-value=0.0027 Score=46.15 Aligned_cols=17 Identities=35% Similarity=0.655 Sum_probs=16.2
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+||||+++.+++.+
T Consensus 52 ~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 52 RPGTGKTVTLRKLWELY 68 (389)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999999988
No 225
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.13 E-value=0.0023 Score=42.80 Aligned_cols=24 Identities=29% Similarity=0.130 Sum_probs=18.0
Q ss_pred CCCCChHHHHHHHHHHhC--Cceech
Q psy11030 1 GPGSGKGTQAEKIVQKYG--YTHIST 24 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~--~~~i~~ 24 (153)
||||||||++..++...+ ..+++.
T Consensus 28 ~~GsGKTtl~~~l~~~~~~~v~~i~~ 53 (220)
T 2cvh_A 28 PYASGKTTLALQTGLLSGKKVAYVDT 53 (220)
T ss_dssp STTSSHHHHHHHHHHHHCSEEEEEES
T ss_pred CCCCCHHHHHHHHHHHcCCcEEEEEC
Confidence 799999999999987444 344554
No 226
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.12 E-value=0.0027 Score=45.61 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=16.3
Q ss_pred CCCCChHHHHHHHHHHhC
Q psy11030 1 GPGSGKGTQAEKIVQKYG 18 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~ 18 (153)
|||+||||+++.+++.++
T Consensus 66 ~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 66 PPGTGKTSTILALTKELY 83 (353)
T ss_dssp STTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 799999999999999864
No 227
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.10 E-value=0.0016 Score=46.78 Aligned_cols=17 Identities=12% Similarity=0.114 Sum_probs=16.3
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+|||++++.+++++
T Consensus 53 pPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 53 ADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp CCSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999999998
No 228
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.02 E-value=0.0036 Score=40.94 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=15.0
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+++.|...+
T Consensus 14 ~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 14 WSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 68999999999998865
No 229
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.99 E-value=0.0032 Score=50.23 Aligned_cols=27 Identities=15% Similarity=0.298 Sum_probs=21.7
Q ss_pred CCCCChHHHHHHHHHHhCCcee--chhHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHI--STGDL 27 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i--~~~~l 27 (153)
|||+|||++|+.|++.++.+++ +++++
T Consensus 496 ~~GtGKT~la~~la~~l~~~~~~i~~s~~ 524 (758)
T 1r6b_X 496 PTGVGKTEVTVQLSKALGIELLRFDMSEY 524 (758)
T ss_dssp STTSSHHHHHHHHHHHHTCEEEEEEGGGC
T ss_pred CCCCcHHHHHHHHHHHhcCCEEEEechhh
Confidence 7999999999999999986554 44443
No 230
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.99 E-value=0.0018 Score=46.52 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=16.8
Q ss_pred CCCCChHHHHHHHHHHhC
Q psy11030 1 GPGSGKGTQAEKIVQKYG 18 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~ 18 (153)
|||+|||++|+.+++.++
T Consensus 53 ~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 53 DRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CGGGCTTHHHHHHHHHSC
T ss_pred CCCccHHHHHHHHHHhCc
Confidence 799999999999999876
No 231
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.96 E-value=0.0016 Score=42.58 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=15.5
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+++.|...+
T Consensus 10 ~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 10 TSDSGKTTLITRMMPIL 26 (171)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 68999999999999876
No 232
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.95 E-value=0.0036 Score=44.67 Aligned_cols=18 Identities=22% Similarity=0.516 Sum_probs=16.2
Q ss_pred CCCCChHHHHHHHHHHhC
Q psy11030 1 GPGSGKGTQAEKIVQKYG 18 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~ 18 (153)
|+||||||+++.|+.-+.
T Consensus 134 psGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 134 PPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp SSSSSHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHhhhcC
Confidence 789999999999998773
No 233
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.94 E-value=0.0032 Score=42.75 Aligned_cols=16 Identities=13% Similarity=0.111 Sum_probs=14.7
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
||||||||++..|+..
T Consensus 32 ~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 32 EFRTGKTQICHTLAVT 47 (243)
T ss_dssp CTTSSHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHH
Confidence 7999999999999984
No 234
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.92 E-value=0.0048 Score=40.44 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=18.2
Q ss_pred CCCCChHHHHHHHHHHhCCceec
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIS 23 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~ 23 (153)
++|+||||+|..|.+ .|+.+++
T Consensus 24 ~SGaGKStlal~L~~-rG~~lva 45 (181)
T 3tqf_A 24 EANIGKSELSLALID-RGHQLVC 45 (181)
T ss_dssp SSSSSHHHHHHHHHH-TTCEEEE
T ss_pred CCCCCHHHHHHHHHH-cCCeEec
Confidence 689999999999987 4776654
No 235
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.91 E-value=0.004 Score=40.03 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=15.4
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+..+
T Consensus 41 ~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 41 DLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp STTSSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 67999999999998876
No 236
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.90 E-value=0.0044 Score=44.83 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=17.4
Q ss_pred CCCCChHHHHHHHHHHhCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGY 19 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~ 19 (153)
|||+||||+++.+++.++.
T Consensus 46 ~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 46 TRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CTTSSHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHhCC
Confidence 7999999999999998864
No 237
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.89 E-value=0.0032 Score=45.37 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=15.7
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+||||+++.|++.+
T Consensus 44 p~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 44 PNGTGKKTRCMALLESI 60 (354)
T ss_dssp STTSSHHHHHHTHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999999965
No 238
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.87 E-value=0.0032 Score=45.92 Aligned_cols=20 Identities=30% Similarity=0.478 Sum_probs=17.3
Q ss_pred CCCCChHHHHHHHHHHhCCc
Q psy11030 1 GPGSGKGTQAEKIVQKYGYT 20 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~ 20 (153)
|+||||||+++.|+..+...
T Consensus 178 ~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 178 GESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CTTSHHHHHHHHHHHHTTCE
T ss_pred CCCCCHHHHHHHHHHHhCCC
Confidence 68999999999999987643
No 239
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.86 E-value=0.0044 Score=43.17 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=15.2
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+.+.|+..+
T Consensus 33 p~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 33 PTGSGKSTTIASMIDYI 49 (261)
T ss_dssp STTCSHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHhC
Confidence 78999999999998765
No 240
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=95.86 E-value=0.0077 Score=42.86 Aligned_cols=17 Identities=18% Similarity=0.304 Sum_probs=15.3
Q ss_pred CCCChHHHHHHHHHHhC
Q psy11030 2 PGSGKGTQAEKIVQKYG 18 (153)
Q Consensus 2 pGsGKst~a~~L~~~~~ 18 (153)
-||||||+.+.|.+.++
T Consensus 95 DgAGKgt~Ik~L~e~Ld 111 (304)
T 3czq_A 95 DAAGKGGAIHATTANMN 111 (304)
T ss_dssp TTSSHHHHHHHHHTTSC
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 38999999999999884
No 241
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.84 E-value=0.0046 Score=42.01 Aligned_cols=17 Identities=29% Similarity=0.569 Sum_probs=14.3
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
||||||||+|..++...
T Consensus 31 ~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 31 GPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999998887653
No 242
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.81 E-value=0.0046 Score=43.79 Aligned_cols=17 Identities=35% Similarity=0.538 Sum_probs=16.0
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+||||+++.+++.+
T Consensus 54 ~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 54 PPGVGKTTAALALAREL 70 (327)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHh
Confidence 79999999999999986
No 243
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.81 E-value=0.0052 Score=43.88 Aligned_cols=26 Identities=12% Similarity=0.028 Sum_probs=21.7
Q ss_pred CCCCChHHHHHHHHHHhCCceechhH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGD 26 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~ 26 (153)
|+|+||||+++.+++..+..++++..
T Consensus 39 ~~G~GKT~Ll~~~~~~~~~~~~~~~~ 64 (350)
T 2qen_A 39 IRRVGKSSLLRAFLNERPGILIDCRE 64 (350)
T ss_dssp CTTSSHHHHHHHHHHHSSEEEEEHHH
T ss_pred CCcCCHHHHHHHHHHHcCcEEEEeec
Confidence 68999999999999988766676644
No 244
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.81 E-value=0.0046 Score=43.56 Aligned_cols=17 Identities=29% Similarity=0.521 Sum_probs=15.2
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
||||||||+++.|+..+
T Consensus 43 ~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 43 GSGMGKSTFVRQQALQW 59 (296)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999988765
No 245
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.77 E-value=0.005 Score=43.96 Aligned_cols=17 Identities=29% Similarity=0.516 Sum_probs=15.6
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||++..|+..+
T Consensus 112 ~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 112 VNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHH
Confidence 68999999999999876
No 246
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.76 E-value=0.0064 Score=39.74 Aligned_cols=43 Identities=16% Similarity=0.540 Sum_probs=33.7
Q ss_pred CCcceeecCCCCCchHHHHHHHHhC---CCCeEEEeecCcchhh-hc
Q psy11030 110 NSKGYLIDGYPREKAQGEQFEREIN---SPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 110 ~~~~~~~dg~~~~~~~~~~~~~~~~---~~~~vi~l~~~~~~~~-~l 152 (153)
....+++||+|+...+...+..... .+|++|++++|++++. |+
T Consensus 85 ~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~ 131 (196)
T 1tev_A 85 QKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERC 131 (196)
T ss_dssp TCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHH
T ss_pred CCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHH
Confidence 3567889999999887766654332 5789999999999988 75
No 247
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.72 E-value=0.021 Score=36.41 Aligned_cols=43 Identities=26% Similarity=0.336 Sum_probs=36.8
Q ss_pred CCCcceeecCCCCCchHHHHHHHHhCCCCeEEEeecCcchhh-hc
Q psy11030 109 PNSKGYLIDGYPREKAQGEQFEREINSPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 109 ~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~vi~l~~~~~~~~-~l 152 (153)
.....+++||+ +...+.+.+.+....++++|++++|.+++. |+
T Consensus 76 ~~~~~vi~dg~-~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~ 119 (179)
T 3lw7_A 76 SNHDLVVFDGV-RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRM 119 (179)
T ss_dssp CCCSCEEEECC-CCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHH
T ss_pred cCCCeEEEeCC-CCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHH
Confidence 44567899999 888888888887778999999999999988 75
No 248
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.70 E-value=0.0054 Score=43.71 Aligned_cols=17 Identities=35% Similarity=0.427 Sum_probs=15.5
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+++.|+..+
T Consensus 110 ~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 110 VNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHH
Confidence 68999999999999876
No 249
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.68 E-value=0.0048 Score=42.48 Aligned_cols=17 Identities=29% Similarity=0.276 Sum_probs=14.6
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+.-+
T Consensus 32 ~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 32 PTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CTTSSHHHHHHHHHTSS
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 78999999999997643
No 250
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.66 E-value=0.0038 Score=42.81 Aligned_cols=17 Identities=35% Similarity=0.204 Sum_probs=14.4
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+.-+
T Consensus 39 ~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 39 PSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp STTSSHHHHHHHHTTSS
T ss_pred CCCCcHHHHHHHHhcCC
Confidence 78999999999997543
No 251
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.66 E-value=0.0054 Score=49.67 Aligned_cols=17 Identities=35% Similarity=0.589 Sum_probs=16.2
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+||||+++.+++.+
T Consensus 199 ~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 199 EPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999999987
No 252
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.65 E-value=0.0039 Score=42.40 Aligned_cols=17 Identities=29% Similarity=0.155 Sum_probs=14.4
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+.-+
T Consensus 38 ~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 38 ASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CTTSCHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 78999999999997543
No 253
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.62 E-value=0.0043 Score=41.75 Aligned_cols=16 Identities=31% Similarity=0.225 Sum_probs=14.1
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
|.||||||+.+.|+..
T Consensus 30 ~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 30 PAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CTTSSTTHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhcC
Confidence 6899999999999763
No 254
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.61 E-value=0.0066 Score=39.98 Aligned_cols=17 Identities=35% Similarity=0.296 Sum_probs=14.0
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
||||||||++-.++.++
T Consensus 11 ~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 11 PMYSGKTTELLSFVEIY 27 (184)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 68999999997677665
No 255
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.60 E-value=0.006 Score=43.04 Aligned_cols=17 Identities=29% Similarity=0.542 Sum_probs=15.9
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+||||+++.+++.+
T Consensus 46 ~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 46 PPGTGKTATAIALARDL 62 (319)
T ss_dssp SSSSSHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHh
Confidence 79999999999999986
No 256
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.57 E-value=0.0065 Score=43.25 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=15.5
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+++.|+..+
T Consensus 108 ~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 108 VNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 68999999999999876
No 257
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.57 E-value=0.0064 Score=42.53 Aligned_cols=18 Identities=28% Similarity=0.274 Sum_probs=16.4
Q ss_pred CCCCChHHHHHHHHHHhC
Q psy11030 1 GPGSGKGTQAEKIVQKYG 18 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~ 18 (153)
|||+|||++|..|+..++
T Consensus 112 ppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 112 PATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp STTSSHHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHhhhc
Confidence 899999999999999754
No 258
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.54 E-value=0.0068 Score=43.69 Aligned_cols=17 Identities=35% Similarity=0.323 Sum_probs=15.5
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+++.|+..+
T Consensus 137 ~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 137 FNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 68999999999999876
No 259
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.52 E-value=0.007 Score=42.32 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=14.6
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
||||||||++..++...
T Consensus 38 ~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 38 PGGAGKSMLALQLAAQI 54 (279)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999988643
No 260
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.48 E-value=0.0073 Score=42.86 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=15.0
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||++..|+..+
T Consensus 113 ~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 113 STGAGKTTTLAKLAAIS 129 (296)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 68999999999998765
No 261
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.45 E-value=0.0075 Score=42.63 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=15.9
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+||||+++.+++.+
T Consensus 50 ~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 50 MPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHh
Confidence 79999999999999986
No 262
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.44 E-value=0.0051 Score=43.22 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=14.5
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+.-+
T Consensus 42 pnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 42 GNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp CTTSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHHcCC
Confidence 78999999999997643
No 263
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.43 E-value=0.003 Score=43.01 Aligned_cols=16 Identities=31% Similarity=0.312 Sum_probs=14.5
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
|.||||||+++.|+..
T Consensus 28 ~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 28 NIGSGKTTYLNHFEKY 43 (230)
T ss_dssp STTSCHHHHHHTTGGG
T ss_pred CCCCCHHHHHHHHHhc
Confidence 5799999999999886
No 264
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.43 E-value=0.0052 Score=42.96 Aligned_cols=17 Identities=24% Similarity=0.259 Sum_probs=14.4
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+.-+
T Consensus 45 ~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 45 PNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CTTSCHHHHHHHHTSSS
T ss_pred CCCCcHHHHHHHHhcCC
Confidence 68999999999997643
No 265
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.39 E-value=0.0054 Score=42.09 Aligned_cols=17 Identities=18% Similarity=0.354 Sum_probs=14.4
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+.-+
T Consensus 39 ~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 39 QVGCGKSSLLSALLAEM 55 (237)
T ss_dssp STTSSHHHHHHHHTTCS
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999996643
No 266
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.37 E-value=0.0069 Score=41.87 Aligned_cols=16 Identities=25% Similarity=0.383 Sum_probs=14.2
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
|.||||||+.+.|+.-
T Consensus 37 ~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 37 PNGAGKSTLGKILAGD 52 (250)
T ss_dssp STTSSHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHhCC
Confidence 6899999999999763
No 267
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.35 E-value=0.0081 Score=43.24 Aligned_cols=24 Identities=17% Similarity=0.147 Sum_probs=19.3
Q ss_pred CCCCChHHHHHHHHHHhC--Cceech
Q psy11030 1 GPGSGKGTQAEKIVQKYG--YTHIST 24 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~--~~~i~~ 24 (153)
|||+||||+|..++...| +.++++
T Consensus 131 pPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 131 KGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp SCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 799999999999988643 446666
No 268
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.34 E-value=0.0069 Score=43.98 Aligned_cols=17 Identities=29% Similarity=0.259 Sum_probs=15.7
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
||||||||++..++...
T Consensus 139 ~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 139 EFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp STTSSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 79999999999999876
No 269
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.33 E-value=0.0086 Score=43.65 Aligned_cols=17 Identities=29% Similarity=0.237 Sum_probs=15.4
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
||||||||+|..++..+
T Consensus 69 ppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 69 QESSGKTTLALHAIAEA 85 (356)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999998875
No 270
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.33 E-value=0.0042 Score=47.32 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=16.5
Q ss_pred CCCCChHHHHHHHHHHhC
Q psy11030 1 GPGSGKGTQAEKIVQKYG 18 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~ 18 (153)
|||+|||++|+.|++.++
T Consensus 49 pPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 49 PPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp CSSSSHHHHHHHGGGGBS
T ss_pred CchHHHHHHHHHHHHHHh
Confidence 799999999999999774
No 271
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.32 E-value=0.0061 Score=41.22 Aligned_cols=17 Identities=29% Similarity=0.255 Sum_probs=14.4
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+.-+
T Consensus 43 ~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 43 PNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CTTSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999996643
No 272
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.31 E-value=0.006 Score=42.50 Aligned_cols=17 Identities=35% Similarity=0.208 Sum_probs=14.5
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+.-+
T Consensus 40 ~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 40 SSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999997644
No 273
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.30 E-value=0.01 Score=42.67 Aligned_cols=20 Identities=15% Similarity=0.119 Sum_probs=18.0
Q ss_pred CCCCChHHHHHHHHHHhCCc
Q psy11030 1 GPGSGKGTQAEKIVQKYGYT 20 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~ 20 (153)
|||+||||+|+.+++.+...
T Consensus 32 ~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 32 LPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp CTTSCHHHHHHHHHHHHTCS
T ss_pred CCCchHHHHHHHHHHHHhCC
Confidence 79999999999999998654
No 274
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.27 E-value=0.0063 Score=41.86 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=14.6
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+.-+
T Consensus 36 ~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 36 PSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999997644
No 275
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.26 E-value=0.014 Score=37.98 Aligned_cols=40 Identities=33% Similarity=0.649 Sum_probs=31.1
Q ss_pred ceeecCCCCCchHHHHHHHHh----CCCCeEEEeecCcchhh-hc
Q psy11030 113 GYLIDGYPREKAQGEQFEREI----NSPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 113 ~~~~dg~~~~~~~~~~~~~~~----~~~~~vi~l~~~~~~~~-~l 152 (153)
++++||+++...+...+...+ ..++.||++++|.+++. |+
T Consensus 79 ~~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~ 123 (186)
T 3cm0_A 79 RVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRI 123 (186)
T ss_dssp EEEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHH
T ss_pred CEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHH
Confidence 388999999887766554322 24899999999999988 75
No 276
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.25 E-value=0.0063 Score=42.25 Aligned_cols=17 Identities=35% Similarity=0.305 Sum_probs=14.5
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+.-+
T Consensus 41 ~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 41 PNGSGKSTLINVITGFL 57 (257)
T ss_dssp STTSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999997643
No 277
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.24 E-value=0.0064 Score=41.78 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=14.5
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+.-+
T Consensus 40 ~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 40 ANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp STTSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999997643
No 278
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.24 E-value=0.0064 Score=41.98 Aligned_cols=17 Identities=41% Similarity=0.540 Sum_probs=14.6
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+.-+
T Consensus 43 ~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 43 RSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp STTSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999997644
No 279
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.21 E-value=0.0085 Score=41.85 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=14.2
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
|.||||||+.+.|+.-
T Consensus 54 ~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 54 PNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTSSHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHhCC
Confidence 6899999999999774
No 280
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.20 E-value=0.0068 Score=42.30 Aligned_cols=17 Identities=29% Similarity=0.165 Sum_probs=14.5
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+.-+
T Consensus 58 ~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 58 PSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTSSHHHHHHHHTTSS
T ss_pred CCCCcHHHHHHHHHcCC
Confidence 68999999999997644
No 281
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.15 E-value=0.0072 Score=41.98 Aligned_cols=17 Identities=29% Similarity=0.270 Sum_probs=14.4
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+.-+
T Consensus 49 ~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 49 PNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999997643
No 282
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.14 E-value=0.0083 Score=46.70 Aligned_cols=18 Identities=22% Similarity=0.470 Sum_probs=16.5
Q ss_pred CCCCChHHHHHHHHHHhC
Q psy11030 1 GPGSGKGTQAEKIVQKYG 18 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~ 18 (153)
|||+||||+++.|+..++
T Consensus 68 p~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 68 EPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CTTSSHHHHHHHHHHTSC
T ss_pred CCCCCHHHHHHHHhccCC
Confidence 799999999999999774
No 283
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.14 E-value=0.0088 Score=43.66 Aligned_cols=17 Identities=24% Similarity=0.188 Sum_probs=14.6
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+.+.|+--.
T Consensus 38 psGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 38 ASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp STTSSHHHHHHHHHTSS
T ss_pred CCCchHHHHHHHHhcCC
Confidence 78999999999997643
No 284
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.14 E-value=0.011 Score=43.19 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=15.5
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+++.|+..+
T Consensus 165 ~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 165 VNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHhhc
Confidence 68999999999999876
No 285
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.13 E-value=0.01 Score=43.44 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=15.4
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+.+.|+..+
T Consensus 144 ~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 144 PTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSSSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhhc
Confidence 78999999999998866
No 286
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.13 E-value=0.011 Score=47.30 Aligned_cols=28 Identities=18% Similarity=0.315 Sum_probs=21.3
Q ss_pred CCCCChHHHHHHHHHHh---C--CceechhHHH
Q psy11030 1 GPGSGKGTQAEKIVQKY---G--YTHISTGDLL 28 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~---~--~~~i~~~~l~ 28 (153)
|||+|||++|+.|++.+ + +..++++++.
T Consensus 529 p~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~ 561 (758)
T 3pxi_A 529 PTGVGKTELARALAESIFGDEESMIRIDMSEYM 561 (758)
T ss_dssp CTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGC
T ss_pred CCCCCHHHHHHHHHHHhcCCCcceEEEechhcc
Confidence 79999999999999987 3 3445555543
No 287
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.12 E-value=0.0075 Score=41.11 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=14.6
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+.-+
T Consensus 42 ~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 42 STGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CTTSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999997654
No 288
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.10 E-value=0.0074 Score=42.26 Aligned_cols=17 Identities=41% Similarity=0.501 Sum_probs=14.6
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+.-+
T Consensus 53 ~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 53 PNGSGKSTVAALLQNLY 69 (271)
T ss_dssp STTSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999997654
No 289
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.08 E-value=0.0078 Score=41.63 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=14.4
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+.-+
T Consensus 34 ~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 34 PNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CTTSSHHHHHHHHTTSS
T ss_pred CCCCcHHHHHHHHhCCC
Confidence 68999999999987643
No 290
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.07 E-value=0.0077 Score=41.91 Aligned_cols=17 Identities=41% Similarity=0.540 Sum_probs=14.6
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+.-+
T Consensus 54 ~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 54 HTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp STTSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhccC
Confidence 68999999999997644
No 291
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.06 E-value=0.011 Score=44.13 Aligned_cols=17 Identities=47% Similarity=0.530 Sum_probs=15.4
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||++..|+..+
T Consensus 105 ~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 105 VQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 68999999999999776
No 292
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.06 E-value=0.0097 Score=43.77 Aligned_cols=17 Identities=29% Similarity=0.251 Sum_probs=14.6
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+.+.|+--+
T Consensus 37 psGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 37 PSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTSSHHHHHHHHHTSS
T ss_pred CCCchHHHHHHHHHcCC
Confidence 78999999999997643
No 293
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.01 E-value=0.012 Score=42.70 Aligned_cols=25 Identities=28% Similarity=0.129 Sum_probs=19.0
Q ss_pred CCCCChHHHHHHHHHHh-----CCceechh
Q psy11030 1 GPGSGKGTQAEKIVQKY-----GYTHISTG 25 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~-----~~~~i~~~ 25 (153)
||||||||+|..++... .+.++++.
T Consensus 69 ~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 69 PESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 79999999999998654 24556654
No 294
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.99 E-value=0.01 Score=43.25 Aligned_cols=16 Identities=38% Similarity=0.314 Sum_probs=14.1
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
|+||||||+.+.|+--
T Consensus 49 pnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 49 PSGSGKTTILRLIAGL 64 (355)
T ss_dssp STTSSHHHHHHHHHTS
T ss_pred CCCCcHHHHHHHHhCC
Confidence 7899999999999754
No 295
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.99 E-value=0.012 Score=42.99 Aligned_cols=17 Identities=35% Similarity=0.350 Sum_probs=15.6
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+||||+++.+++.+
T Consensus 60 ~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 60 RVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CCSSSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 79999999999998876
No 296
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.99 E-value=0.0085 Score=42.16 Aligned_cols=17 Identities=24% Similarity=0.104 Sum_probs=14.6
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+.-+
T Consensus 55 ~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 55 LNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CTTSSHHHHHHHHTTSS
T ss_pred CCCCcHHHHHHHHhCCC
Confidence 68999999999997644
No 297
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.97 E-value=0.01 Score=43.28 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=14.5
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+.+.|+--.
T Consensus 37 pnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 37 PSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp STTSSHHHHHHHHHTSS
T ss_pred CCCchHHHHHHHHHCCC
Confidence 78999999999997643
No 298
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.97 E-value=0.0084 Score=41.83 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=14.4
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+.-+
T Consensus 41 ~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 41 NTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp STTSSHHHHHHHHTTSS
T ss_pred CCCCcHHHHHHHHhCCC
Confidence 68999999999997643
No 299
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.95 E-value=0.013 Score=46.72 Aligned_cols=17 Identities=29% Similarity=0.388 Sum_probs=16.1
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+||||+++.|++.+
T Consensus 215 ~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 215 ESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999999987
No 300
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.93 E-value=0.0088 Score=41.45 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=14.4
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+.-+
T Consensus 39 ~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 39 QNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CSSSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999997643
No 301
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.91 E-value=0.011 Score=43.14 Aligned_cols=17 Identities=41% Similarity=0.466 Sum_probs=14.6
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+.+.|+--+
T Consensus 37 pnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 37 PSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTSSHHHHHHHHHTSS
T ss_pred CCCchHHHHHHHHhcCC
Confidence 78999999999997643
No 302
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=94.91 E-value=0.041 Score=41.94 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=15.8
Q ss_pred CCCChHHHHHHHHHHhCC
Q psy11030 2 PGSGKGTQAEKIVQKYGY 19 (153)
Q Consensus 2 pGsGKst~a~~L~~~~~~ 19 (153)
-||||+|+.+.|.+.++-
T Consensus 52 D~AGKg~~Ik~l~~~l~p 69 (500)
T 3czp_A 52 EGAGKGETVKLLNEWMDP 69 (500)
T ss_dssp TTSSHHHHHHHHHHHSCG
T ss_pred CCCCHHHHHHHHHHhcCc
Confidence 389999999999999853
No 303
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.90 E-value=0.0093 Score=41.61 Aligned_cols=16 Identities=38% Similarity=0.306 Sum_probs=14.1
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
|.||||||+.+.|+.-
T Consensus 38 ~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 38 PNGSGKTTLLRAISGL 53 (263)
T ss_dssp CTTSSHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHhCC
Confidence 6899999999999764
No 304
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.88 E-value=0.015 Score=39.69 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=14.7
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
+||+||||++-.++..+
T Consensus 14 kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 14 APGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHH
Confidence 69999999988888766
No 305
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.87 E-value=0.012 Score=43.21 Aligned_cols=17 Identities=29% Similarity=0.253 Sum_probs=14.6
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+.+.|+--+
T Consensus 45 pnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 45 PSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTSSHHHHHHHHHTSS
T ss_pred CCCChHHHHHHHHHcCC
Confidence 78999999999997643
No 306
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.86 E-value=0.011 Score=47.79 Aligned_cols=17 Identities=24% Similarity=0.347 Sum_probs=16.2
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+|||++|+.|++.+
T Consensus 596 p~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 596 PTGVGKTELAKTLAATL 612 (854)
T ss_dssp CSSSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 79999999999999987
No 307
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.86 E-value=0.014 Score=42.09 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=15.0
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
||||||||+.+.|+..+
T Consensus 63 ~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 63 VPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 79999999999998654
No 308
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.85 E-value=0.014 Score=42.51 Aligned_cols=17 Identities=29% Similarity=0.423 Sum_probs=15.1
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+.+.|...+
T Consensus 131 ptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 131 PTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp STTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhcc
Confidence 78999999999997765
No 309
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.84 E-value=0.012 Score=43.20 Aligned_cols=16 Identities=31% Similarity=0.324 Sum_probs=14.1
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
|+||||||+.+.|+--
T Consensus 37 pnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 37 PSGCGKTTTLRMIAGL 52 (372)
T ss_dssp STTSSHHHHHHHHHTS
T ss_pred CCCcHHHHHHHHHHcC
Confidence 7899999999999754
No 310
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.81 E-value=0.015 Score=40.69 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=15.2
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+.+.|+...
T Consensus 10 ~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 10 QSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp SSSSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998765
No 311
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.80 E-value=0.0093 Score=43.48 Aligned_cols=18 Identities=33% Similarity=0.442 Sum_probs=15.8
Q ss_pred CCCCChHHHHHHHHHHhC
Q psy11030 1 GPGSGKGTQAEKIVQKYG 18 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~ 18 (153)
|.||||||+.+.|...+.
T Consensus 183 ~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 183 ETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp SSSSCHHHHHHHHHTTSC
T ss_pred CCCCCHHHHHHHHHhcCC
Confidence 689999999999988763
No 312
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.78 E-value=0.016 Score=39.42 Aligned_cols=17 Identities=12% Similarity=0.100 Sum_probs=15.0
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
||||||||.+-.++.++
T Consensus 20 ~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 20 PMFAGKTAELIRRLHRL 36 (223)
T ss_dssp STTSCHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHH
Confidence 57999999999888877
No 313
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.78 E-value=0.012 Score=43.51 Aligned_cols=15 Identities=13% Similarity=0.155 Sum_probs=13.2
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
||||||||++..|+-
T Consensus 186 ~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 186 EFRTGKSQLCHTLAV 200 (400)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHH
Confidence 799999999998763
No 314
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.76 E-value=0.013 Score=42.84 Aligned_cols=17 Identities=24% Similarity=0.218 Sum_probs=14.4
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+.-+
T Consensus 62 pnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 62 ASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTSSHHHHHHHHHTSS
T ss_pred CCCchHHHHHHHHhcCC
Confidence 78999999999997643
No 315
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.72 E-value=0.016 Score=41.55 Aligned_cols=17 Identities=35% Similarity=0.516 Sum_probs=15.3
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||++..|+..+
T Consensus 113 ~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 113 VNGTGKTTSLAKMANYY 129 (320)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 58999999999999876
No 316
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.72 E-value=0.016 Score=43.57 Aligned_cols=17 Identities=24% Similarity=0.388 Sum_probs=15.7
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
||||||||++..+++.+
T Consensus 53 ~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 53 PAGTGATTLTKFIIEAL 69 (459)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999998887
No 317
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.70 E-value=0.016 Score=44.03 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=15.3
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+++.|+..+
T Consensus 301 pNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 301 VNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHh
Confidence 68999999999999876
No 318
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.69 E-value=0.016 Score=37.95 Aligned_cols=16 Identities=19% Similarity=0.422 Sum_probs=14.1
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
++||||||+.+.|+..
T Consensus 37 ~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 37 DSGVGKSNLLSRFTRN 52 (191)
T ss_dssp CTTSSHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHhcC
Confidence 6899999999999764
No 319
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=94.69 E-value=0.016 Score=38.73 Aligned_cols=16 Identities=31% Similarity=0.551 Sum_probs=13.0
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
+||||||+.|..+...
T Consensus 13 ~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 13 TPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CTTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 6999999999886443
No 320
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.63 E-value=0.018 Score=43.24 Aligned_cols=17 Identities=35% Similarity=0.511 Sum_probs=15.4
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
+|||||||++..|+..+
T Consensus 108 ~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 108 IQGSGKTTTVAKLARYF 124 (443)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 68999999999999866
No 321
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.62 E-value=0.018 Score=39.52 Aligned_cols=17 Identities=29% Similarity=0.309 Sum_probs=14.9
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
.+||||||++..|+..+
T Consensus 22 kgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 22 TAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999999765
No 322
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.62 E-value=0.018 Score=39.10 Aligned_cols=16 Identities=44% Similarity=0.686 Sum_probs=13.3
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
+||+|||++|..++.+
T Consensus 38 ~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 38 GTGTGKTTFAAQFIYK 53 (251)
T ss_dssp CTTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 6999999999887543
No 323
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=94.61 E-value=0.0092 Score=43.05 Aligned_cols=18 Identities=28% Similarity=0.265 Sum_probs=13.7
Q ss_pred CCCCChHHHHHHHHHHhC
Q psy11030 1 GPGSGKGTQAEKIVQKYG 18 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~ 18 (153)
+-||||||+++.|++.++
T Consensus 12 ~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 12 PHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp CTTSSHHHHHHHHTC---
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 359999999999999874
No 324
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=94.60 E-value=0.023 Score=40.51 Aligned_cols=25 Identities=8% Similarity=0.034 Sum_probs=19.3
Q ss_pred CCCCChHHHHHHHHHHhCC--ceechh
Q psy11030 1 GPGSGKGTQAEKIVQKYGY--THISTG 25 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~--~~i~~~ 25 (153)
|+|+||||+++.+++..+. .+++..
T Consensus 38 ~~G~GKT~L~~~~~~~~~~~~~~~~~~ 64 (357)
T 2fna_A 38 LRRTGKSSIIKIGINELNLPYIYLDLR 64 (357)
T ss_dssp STTSSHHHHHHHHHHHHTCCEEEEEGG
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEEEch
Confidence 6899999999999998743 345543
No 325
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.58 E-value=0.015 Score=43.90 Aligned_cols=17 Identities=18% Similarity=0.323 Sum_probs=14.9
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+++.|+.-+
T Consensus 146 pnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 146 GSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp STTSSHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHhCcc
Confidence 68999999999998754
No 326
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.57 E-value=0.015 Score=42.91 Aligned_cols=15 Identities=33% Similarity=0.488 Sum_probs=13.7
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
|+||||||+.+.|+.
T Consensus 55 psGsGKSTLLr~iaG 69 (390)
T 3gd7_A 55 RTGSGKSTLLSAFLR 69 (390)
T ss_dssp STTSSHHHHHHHHHT
T ss_pred CCCChHHHHHHHHhC
Confidence 789999999999975
No 327
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.52 E-value=0.0093 Score=43.35 Aligned_cols=17 Identities=29% Similarity=0.176 Sum_probs=14.5
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+.+.|+--.
T Consensus 34 pnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 34 PTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CCTHHHHHHHHHHHTSS
T ss_pred CCCccHHHHHHHHHcCC
Confidence 78999999999997643
No 328
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.50 E-value=0.019 Score=40.78 Aligned_cols=17 Identities=24% Similarity=0.259 Sum_probs=15.4
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+|||++|+.+++..
T Consensus 33 e~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 33 DSGTGKELVARALHACS 49 (304)
T ss_dssp CTTSCHHHHHHHHHHHS
T ss_pred CCCchHHHHHHHHHHhC
Confidence 69999999999999854
No 329
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.47 E-value=0.023 Score=37.94 Aligned_cols=17 Identities=29% Similarity=0.476 Sum_probs=15.2
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
++||||||+...|+..+
T Consensus 38 ~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 38 AIGSGKTLLIERTIERI 54 (221)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999998875
No 330
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.40 E-value=0.02 Score=37.63 Aligned_cols=16 Identities=19% Similarity=0.422 Sum_probs=14.1
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
++||||||+.+.|...
T Consensus 13 ~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 13 DSGVGKSNLLSRFTRN 28 (199)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHhcC
Confidence 6899999999999864
No 331
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.39 E-value=0.022 Score=42.40 Aligned_cols=18 Identities=33% Similarity=0.322 Sum_probs=16.1
Q ss_pred CCCCChHHHHHHHHHHhC
Q psy11030 1 GPGSGKGTQAEKIVQKYG 18 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~ 18 (153)
|.||||||+.+.|...++
T Consensus 175 pnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 175 PTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp STTSCHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHhhcC
Confidence 789999999999988774
No 332
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.33 E-value=0.022 Score=41.45 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=19.1
Q ss_pred CCCCChHHHHHHHHHHh-----CCceech
Q psy11030 1 GPGSGKGTQAEKIVQKY-----GYTHIST 24 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~-----~~~~i~~ 24 (153)
||||||||+|..++... .+.++++
T Consensus 71 ~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 71 PESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 69999999999998764 3456766
No 333
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.33 E-value=0.025 Score=36.65 Aligned_cols=18 Identities=33% Similarity=0.521 Sum_probs=15.4
Q ss_pred CCCCChHHHHHHHHHHhC
Q psy11030 1 GPGSGKGTQAEKIVQKYG 18 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~ 18 (153)
|.||||||+.++|.--++
T Consensus 34 ~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 34 ANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp CTTSSHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHc
Confidence 679999999999987654
No 334
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.32 E-value=0.011 Score=42.52 Aligned_cols=17 Identities=41% Similarity=0.565 Sum_probs=15.2
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+.+.|+..+
T Consensus 179 ~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 179 GTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp STTSCHHHHHHHGGGGS
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999998765
No 335
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.31 E-value=0.022 Score=40.82 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=15.3
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
||||||||+|..++...
T Consensus 115 ~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 115 EFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp STTSSHHHHHHHHHHHT
T ss_pred CCCCCHhHHHHHHHHHH
Confidence 79999999999998764
No 336
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.30 E-value=0.019 Score=42.98 Aligned_cols=17 Identities=41% Similarity=0.442 Sum_probs=15.4
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
+|||||||++..|+..+
T Consensus 107 ~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 107 IQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CSSSSTTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 58999999999999876
No 337
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=94.29 E-value=0.015 Score=42.70 Aligned_cols=18 Identities=28% Similarity=0.265 Sum_probs=13.6
Q ss_pred CCCCChHHHHHHHHHHhC
Q psy11030 1 GPGSGKGTQAEKIVQKYG 18 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~ 18 (153)
+-||||||+++.|++.++
T Consensus 57 ~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 57 PHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp STTSSHHHHHHHHHC---
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 359999999999999874
No 338
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.28 E-value=0.024 Score=40.11 Aligned_cols=17 Identities=47% Similarity=0.550 Sum_probs=15.3
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
++|+||||++..|+..+
T Consensus 106 ~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 106 LQGSGKTTTAAKLALYY 122 (295)
T ss_dssp CTTTTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 58999999999998876
No 339
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.25 E-value=0.016 Score=41.03 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=14.4
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+.-+
T Consensus 72 ~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 72 STGAGKTSLLMMIMGEL 88 (290)
T ss_dssp STTSSHHHHHHHHTTSS
T ss_pred CCCCcHHHHHHHHhcCC
Confidence 68999999999997643
No 340
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.23 E-value=0.024 Score=41.00 Aligned_cols=16 Identities=13% Similarity=0.127 Sum_probs=14.9
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
||||||||+|..++..
T Consensus 130 ~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 130 EFRTGKTQLSHTLCVT 145 (343)
T ss_dssp CTTCTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 7999999999999986
No 341
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.18 E-value=0.021 Score=40.50 Aligned_cols=17 Identities=41% Similarity=0.516 Sum_probs=15.3
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
++|+||||++..|+..+
T Consensus 106 ~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 106 VQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SSCSSTTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 68999999999999776
No 342
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.15 E-value=0.021 Score=40.51 Aligned_cols=16 Identities=19% Similarity=0.312 Sum_probs=14.1
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+.+.|. ..
T Consensus 173 ~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 173 PSGVGKSSILSRLT-GE 188 (302)
T ss_dssp STTSSHHHHHHHHH-SC
T ss_pred CCCCCHHHHHHHHH-Hh
Confidence 68999999999998 43
No 343
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.14 E-value=0.026 Score=40.89 Aligned_cols=17 Identities=35% Similarity=0.438 Sum_probs=15.1
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
+|||||||+...|...+
T Consensus 82 ~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 82 PPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 69999999999998754
No 344
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=94.12 E-value=0.0071 Score=47.05 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=18.4
Q ss_pred CCCCChHHHHHHHHHHhCCcee
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHI 22 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i 22 (153)
|||+|||++|+.+++.++...+
T Consensus 335 ppGtGKT~LAr~la~~~~r~~~ 356 (595)
T 3f9v_A 335 DPGTAKSQMLQFISRVAPRAVY 356 (595)
T ss_dssp SSCCTHHHHHHSSSTTCSCEEC
T ss_pred CCchHHHHHHHHHHHhCCCcee
Confidence 7999999999999998764443
No 345
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.11 E-value=0.027 Score=40.87 Aligned_cols=17 Identities=35% Similarity=0.470 Sum_probs=15.4
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
+||+||||++..|+..+
T Consensus 87 ~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 87 VPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 58999999999998876
No 346
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.08 E-value=0.01 Score=42.37 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=14.8
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+.-+
T Consensus 88 ~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 88 PSGAGKSTILRLLFRFY 104 (306)
T ss_dssp SSCHHHHHHHHHHTTSS
T ss_pred CCCchHHHHHHHHHcCC
Confidence 68999999999997754
No 347
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.04 E-value=0.027 Score=43.68 Aligned_cols=17 Identities=35% Similarity=0.710 Sum_probs=15.2
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+||||++..+...+
T Consensus 212 ~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 212 GPGTGKSTTTKAVADLA 228 (574)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999998765
No 348
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.02 E-value=0.028 Score=40.40 Aligned_cols=17 Identities=24% Similarity=0.159 Sum_probs=14.2
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
||||||||+|-.++...
T Consensus 36 ~pGsGKTtL~Lq~~~~~ 52 (333)
T 3io5_A 36 PSKSFKSNFGLTMVSSY 52 (333)
T ss_dssp SSSSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999988876554
No 349
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.00 E-value=0.01 Score=43.26 Aligned_cols=16 Identities=31% Similarity=0.287 Sum_probs=14.1
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
|+||||||+.+.|+--
T Consensus 39 pnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 39 PSGAGKTTFMRIIAGL 54 (353)
T ss_dssp SCHHHHHHHHHHHHTS
T ss_pred CCCCcHHHHHHHHhCC
Confidence 7899999999999764
No 350
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=93.95 E-value=0.028 Score=40.06 Aligned_cols=16 Identities=25% Similarity=0.152 Sum_probs=14.6
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
||||||||+|..++..
T Consensus 106 ~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 106 VFGSGKTQIMHQSCVN 121 (322)
T ss_dssp STTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 7999999999999875
No 351
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.94 E-value=0.11 Score=34.08 Aligned_cols=36 Identities=36% Similarity=0.682 Sum_probs=28.6
Q ss_pred CcEeecCCccchhhhhhhhhh----------hhhHHHHHHHHhhcC
Q psy11030 73 KGYLIDGYPREKAQGEQFERE----------DVVMELLGEKVLKEL 108 (153)
Q Consensus 73 ~~~ildg~p~~~~q~~~~~~~----------~~~~~~l~~Rl~~R~ 108 (153)
.+||+||+|++..+...+... ++|++++.+|+.+|.
T Consensus 97 ~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~ 142 (203)
T 1ukz_A 97 HKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERG 142 (203)
T ss_dssp CEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHH
T ss_pred CeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc
Confidence 578999999988766544321 999999999999874
No 352
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=93.94 E-value=0.032 Score=39.92 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=18.1
Q ss_pred CCCCChHHHHHHHHHHhCCceec
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIS 23 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~ 23 (153)
++|+||||+|..|.++ |...++
T Consensus 152 ~sG~GKSt~a~~l~~~-g~~lv~ 173 (314)
T 1ko7_A 152 DSGIGKSETALELIKR-GHRLVA 173 (314)
T ss_dssp STTSSHHHHHHHHHHT-TCEEEE
T ss_pred CCCCCHHHHHHHHHhc-CCceec
Confidence 6899999999999774 776664
No 353
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=93.92 E-value=0.015 Score=39.69 Aligned_cols=17 Identities=35% Similarity=0.569 Sum_probs=15.2
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+--+
T Consensus 35 pnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 35 GNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp CCSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhccc
Confidence 78999999999998765
No 354
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.89 E-value=0.026 Score=41.16 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=14.0
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
|+||||||+.+.|+..
T Consensus 223 ~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 223 QSGVGKSSLLNALLGL 238 (358)
T ss_dssp CTTSSHHHHHHHHHCC
T ss_pred CCCccHHHHHHHHhcc
Confidence 7899999999999653
No 355
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.87 E-value=0.033 Score=39.78 Aligned_cols=17 Identities=29% Similarity=0.304 Sum_probs=15.1
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
+||+||||+|..++...
T Consensus 76 ~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 76 RPSMGKTAFALKQAKNM 92 (315)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 69999999999998765
No 356
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.84 E-value=0.035 Score=36.78 Aligned_cols=17 Identities=18% Similarity=0.149 Sum_probs=15.1
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||.+-.++.++
T Consensus 16 ~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 16 PMYSGKSEELIRRIRRA 32 (191)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHH
Confidence 46999999999998887
No 357
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.79 E-value=0.03 Score=35.62 Aligned_cols=15 Identities=27% Similarity=0.406 Sum_probs=13.3
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
+||+||||+...|..
T Consensus 11 ~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 11 NPNVGKSTIFNALTG 25 (165)
T ss_dssp STTSSHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHhC
Confidence 589999999999965
No 358
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.76 E-value=0.034 Score=40.11 Aligned_cols=17 Identities=35% Similarity=0.411 Sum_probs=15.1
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
+||+||||+...|+..+
T Consensus 64 ~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 64 TPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 69999999999998765
No 359
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=93.73 E-value=0.031 Score=40.00 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=17.6
Q ss_pred CCCCChHHHHHHHHHHhCCceec
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHIS 23 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~ 23 (153)
++|+||||+|-.|.+ .|+..++
T Consensus 155 ~sG~GKStlal~l~~-~G~~lv~ 176 (312)
T 1knx_A 155 RSGIGKSECALDLIN-KNHLFVG 176 (312)
T ss_dssp SSSSSHHHHHHHHHT-TTCEEEE
T ss_pred CCCCCHHHHHHHHHH-cCCEEEe
Confidence 689999999998865 5776654
No 360
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.68 E-value=0.046 Score=36.47 Aligned_cols=31 Identities=29% Similarity=0.576 Sum_probs=21.2
Q ss_pred cCCccchhhhhhhhhh----------hhhHHHHHHHHhhcC
Q psy11030 78 DGYPREKAQGEQFERE----------DVVMELLGEKVLKEL 108 (153)
Q Consensus 78 dg~p~~~~q~~~~~~~----------~~~~~~l~~Rl~~R~ 108 (153)
||+|++..++..+... ++|++++.+|+..|.
T Consensus 84 dg~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~R~~~R~ 124 (214)
T 1e4v_A 84 DGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRR 124 (214)
T ss_dssp ESCCCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTEE
T ss_pred eCCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHCCc
Confidence 4566666555433221 899999999999875
No 361
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.64 E-value=0.022 Score=40.37 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=15.3
Q ss_pred CCCCChHHHHHHHHHHhCCceechhHH
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTHISTGDL 27 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~i~~~~l 27 (153)
|+||||||+.+.|+. ....+.+.+
T Consensus 177 ~sG~GKSTll~~l~g---~~~~~~G~i 200 (301)
T 1u0l_A 177 LSGVGKSSLLNAINP---GLKLRVSEV 200 (301)
T ss_dssp STTSSHHHHHHHHST---TCCCC----
T ss_pred CCCCcHHHHHHHhcc---cccccccce
Confidence 789999999998854 333444444
No 362
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.63 E-value=0.036 Score=41.59 Aligned_cols=17 Identities=35% Similarity=0.386 Sum_probs=14.9
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
+||+||||++..++...
T Consensus 211 ~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 211 RPSVGKTAFALNIAQNV 227 (454)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 69999999999987754
No 363
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=93.56 E-value=0.082 Score=40.30 Aligned_cols=22 Identities=18% Similarity=0.469 Sum_probs=17.5
Q ss_pred CCChHHHHHHHHHHhC---Cceech
Q psy11030 3 GSGKGTQAEKIVQKYG---YTHIST 24 (153)
Q Consensus 3 GsGKst~a~~L~~~~~---~~~i~~ 24 (153)
||||+|+.+.|.+.++ +.++.+
T Consensus 310 aAGKg~~Ik~l~~~ldprg~~V~~~ 334 (500)
T 3czp_A 310 AAGKGGAIRRVTDALDPRQYHIVPI 334 (500)
T ss_dssp TSCHHHHHHHHHTTSCGGGCEEEEC
T ss_pred CCCHHHHHHHHHHhcCccCCeEEEe
Confidence 8999999999999884 444443
No 364
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.55 E-value=0.039 Score=34.52 Aligned_cols=16 Identities=25% Similarity=0.557 Sum_probs=13.8
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
++||||||+...|...
T Consensus 9 ~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 9 RPNVGKSSLFNRLLKK 24 (161)
T ss_dssp CTTSSHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHhCC
Confidence 5899999999999764
No 365
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.53 E-value=0.041 Score=36.77 Aligned_cols=17 Identities=35% Similarity=0.513 Sum_probs=15.0
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
++||||||+...|+..+
T Consensus 46 ~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 46 AIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 48999999999998875
No 366
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.45 E-value=0.038 Score=41.37 Aligned_cols=18 Identities=22% Similarity=0.315 Sum_probs=16.1
Q ss_pred CCCCChHHHHHHHHHHhC
Q psy11030 1 GPGSGKGTQAEKIVQKYG 18 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~ 18 (153)
|+||||||+.+.|+....
T Consensus 165 ~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 165 GSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp CTTSSHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHhcccC
Confidence 789999999999999764
No 367
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.43 E-value=0.033 Score=42.61 Aligned_cols=13 Identities=23% Similarity=0.337 Sum_probs=11.8
Q ss_pred CCCCChHHHHHHH
Q psy11030 1 GPGSGKGTQAEKI 13 (153)
Q Consensus 1 ppGsGKst~a~~L 13 (153)
|+||||||+++.+
T Consensus 47 ~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 47 TSGTGKTLFSIQF 59 (525)
T ss_dssp STTSSHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 7999999999983
No 368
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.37 E-value=0.03 Score=36.25 Aligned_cols=15 Identities=33% Similarity=0.596 Sum_probs=13.3
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
+|||||||+...|+.
T Consensus 10 ~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 10 NTGSGKTTLLQQLMK 24 (184)
T ss_dssp CTTSSHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHhc
Confidence 589999999998865
No 369
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.36 E-value=0.042 Score=34.56 Aligned_cols=16 Identities=13% Similarity=0.258 Sum_probs=13.7
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
++||||||+...|...
T Consensus 13 ~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 13 NGAVGKSSMIQRYCKG 28 (168)
T ss_dssp STTSSHHHHHHHHHHC
T ss_pred cCCCCHHHHHHHHHcC
Confidence 5899999999998763
No 370
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.30 E-value=0.041 Score=39.94 Aligned_cols=18 Identities=33% Similarity=0.411 Sum_probs=16.1
Q ss_pred CCCCChHHHHHHHHHHhC
Q psy11030 1 GPGSGKGTQAEKIVQKYG 18 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~ 18 (153)
|+||||||+.+.|+....
T Consensus 79 ~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 79 GSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp CTTSSHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHhcCCC
Confidence 689999999999999764
No 371
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.28 E-value=0.044 Score=34.24 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=13.7
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
++||||||+...|...
T Consensus 11 ~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 11 AGGVGKSALTIQLIQN 26 (166)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHhC
Confidence 4899999999998764
No 372
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.26 E-value=0.044 Score=41.79 Aligned_cols=17 Identities=41% Similarity=0.515 Sum_probs=15.1
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
+|||||||++..|+..+
T Consensus 109 ~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 109 LQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 58999999999999766
No 373
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.26 E-value=0.046 Score=39.98 Aligned_cols=26 Identities=27% Similarity=0.227 Sum_probs=19.7
Q ss_pred CCCCChHHHHHHHHHHh-----CCceechhH
Q psy11030 1 GPGSGKGTQAEKIVQKY-----GYTHISTGD 26 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~-----~~~~i~~~~ 26 (153)
||||||||+|..++... .+.++++..
T Consensus 82 ~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 82 PESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 79999999999988764 345666543
No 374
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.25 E-value=0.046 Score=40.78 Aligned_cols=17 Identities=47% Similarity=0.550 Sum_probs=15.5
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||++..|+..+
T Consensus 106 ~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 106 LQGSGKTTTAAKLALYY 122 (425)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 58999999999999877
No 375
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.21 E-value=0.063 Score=35.97 Aligned_cols=15 Identities=47% Similarity=0.450 Sum_probs=13.5
Q ss_pred hhhHHHHHHHHhhcC
Q psy11030 94 DVVMELLGEKVLKEL 108 (153)
Q Consensus 94 ~~~~~~l~~Rl~~R~ 108 (153)
++|++++.+|+..|.
T Consensus 116 ~~~~~~~~~R~~~r~ 130 (222)
T 1zak_A 116 DVPDELLVERVVGRR 130 (222)
T ss_dssp ECCHHHHHHHHTTEE
T ss_pred ECCHHHHHHHHHcCC
Confidence 899999999999875
No 376
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.20 E-value=0.032 Score=42.66 Aligned_cols=17 Identities=29% Similarity=0.258 Sum_probs=15.0
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+.+.|...+
T Consensus 268 ptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 268 ETASGKTTTLNAIMMFI 284 (511)
T ss_dssp STTSSHHHHHHHHGGGS
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 78999999999997755
No 377
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.17 E-value=0.047 Score=41.74 Aligned_cols=17 Identities=24% Similarity=0.436 Sum_probs=15.0
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
||||||||+++.++...
T Consensus 289 ~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 289 ATGTGKTLLVSRFVENA 305 (525)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999999998654
No 378
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.15 E-value=0.046 Score=42.87 Aligned_cols=17 Identities=35% Similarity=0.579 Sum_probs=11.8
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+|||++.-.+...+
T Consensus 213 PPGTGKT~ti~~~I~~l 229 (646)
T 4b3f_X 213 PPGTGKTTTVVEIILQA 229 (646)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 89999997655444433
No 379
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.08 E-value=0.045 Score=35.32 Aligned_cols=15 Identities=27% Similarity=0.406 Sum_probs=13.5
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
++|+||||+...|..
T Consensus 15 ~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 15 NPNVGKSTIFNALTG 29 (188)
T ss_dssp STTSSHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHhC
Confidence 589999999999976
No 380
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.04 E-value=0.052 Score=33.99 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=13.4
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
+|||||||+...|...
T Consensus 11 ~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 11 SGGVGKSALTVQFVTG 26 (167)
T ss_dssp CTTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHcC
Confidence 5899999999888753
No 381
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.94 E-value=0.044 Score=42.13 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=14.5
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+-.+
T Consensus 55 ~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 55 PNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSSHHHHHHHHHTSS
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999997643
No 382
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.93 E-value=0.04 Score=41.11 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=13.9
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
|+||||||+.+.|+..
T Consensus 50 ~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 50 ETGLGKSTLMDTLFNT 65 (427)
T ss_dssp STTSSSHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHhCc
Confidence 6899999999999653
No 383
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.92 E-value=0.054 Score=40.51 Aligned_cols=17 Identities=29% Similarity=0.290 Sum_probs=14.9
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
++||||||++..|+..+
T Consensus 108 ~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 108 LQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999999766
No 384
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.90 E-value=0.05 Score=34.90 Aligned_cols=16 Identities=19% Similarity=0.461 Sum_probs=13.8
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
+||+||||+...|...
T Consensus 12 ~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 12 RPNAGKSSLLNALAGR 27 (172)
T ss_dssp STTSSHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHhCC
Confidence 5899999999999753
No 385
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.86 E-value=0.047 Score=41.44 Aligned_cols=17 Identities=35% Similarity=0.556 Sum_probs=15.1
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+.-+
T Consensus 37 ~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 37 GNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHhcCC
Confidence 78999999999998755
No 386
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.85 E-value=0.048 Score=40.57 Aligned_cols=15 Identities=27% Similarity=0.384 Sum_probs=13.8
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
|+||||||+.+.|+.
T Consensus 77 ~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 77 ETGSGKSSFINTLRG 91 (413)
T ss_dssp CTTSSHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHhC
Confidence 689999999999976
No 387
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=92.84 E-value=0.044 Score=42.47 Aligned_cols=17 Identities=41% Similarity=0.534 Sum_probs=15.1
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+.-+
T Consensus 377 ~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 377 RSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999998765
No 388
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.77 E-value=0.058 Score=33.79 Aligned_cols=16 Identities=19% Similarity=0.300 Sum_probs=13.6
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
++||||||+...|...
T Consensus 12 ~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 12 SGGVGKSALTLQFMYD 27 (168)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHhC
Confidence 5899999999998753
No 389
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.73 E-value=0.024 Score=37.40 Aligned_cols=15 Identities=13% Similarity=0.350 Sum_probs=12.8
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
++||||||+.+.|..
T Consensus 34 ~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 34 RSNAGKSSALNTLTN 48 (210)
T ss_dssp CTTSSHHHHHTTTCC
T ss_pred CCCCCHHHHHHHHhC
Confidence 689999999998754
No 390
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=92.73 E-value=0.039 Score=42.74 Aligned_cols=17 Identities=47% Similarity=0.579 Sum_probs=15.1
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+.-+
T Consensus 377 ~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 377 RSGSGKSTIASLITRFY 393 (582)
T ss_dssp CTTSSHHHHHHHHTTTT
T ss_pred CCCCCHHHHHHHHhhcc
Confidence 68999999999998765
No 391
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=92.70 E-value=0.059 Score=42.15 Aligned_cols=17 Identities=35% Similarity=0.595 Sum_probs=13.8
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+||||+...+...+
T Consensus 203 ppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 203 PPGTGKTVTSATIVYHL 219 (624)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 89999999877776654
No 392
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.68 E-value=0.048 Score=38.93 Aligned_cols=16 Identities=31% Similarity=0.362 Sum_probs=14.1
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
|.||||||+.+.|...
T Consensus 12 ~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 12 FLGAGKTTLLRHILNE 27 (318)
T ss_dssp SSSSSCHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHhh
Confidence 5799999999999864
No 393
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.67 E-value=0.059 Score=35.77 Aligned_cols=17 Identities=18% Similarity=0.147 Sum_probs=14.6
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
++||||||+...|....
T Consensus 20 ~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 20 PQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp STTSSHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 58999999999998753
No 394
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=92.66 E-value=0.063 Score=39.33 Aligned_cols=17 Identities=29% Similarity=0.538 Sum_probs=14.7
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||+++.|...+
T Consensus 43 ~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 43 KPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 68999999999987654
No 395
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.62 E-value=0.063 Score=40.15 Aligned_cols=17 Identities=35% Similarity=0.345 Sum_probs=14.9
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
+||+||||+|..++...
T Consensus 208 ~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 208 RPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 69999999999988754
No 396
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.60 E-value=0.063 Score=34.78 Aligned_cols=16 Identities=19% Similarity=0.196 Sum_probs=13.9
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
++||||||+...|...
T Consensus 56 ~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 56 PQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CTTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHhcC
Confidence 5899999999998764
No 397
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=92.58 E-value=0.062 Score=41.90 Aligned_cols=17 Identities=41% Similarity=0.800 Sum_probs=13.9
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+||||++..+...+
T Consensus 172 ~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 172 GPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp CTTSTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 79999999888776554
No 398
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.55 E-value=0.054 Score=35.06 Aligned_cols=18 Identities=33% Similarity=0.124 Sum_probs=14.9
Q ss_pred CCCCChHHHHHHHHHHhC
Q psy11030 1 GPGSGKGTQAEKIVQKYG 18 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~ 18 (153)
+|||||||+.+.+...+.
T Consensus 22 ~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 22 PGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp STTSSHHHHHHHHHHTSC
T ss_pred CCCCCHHHHHHHHHhhcc
Confidence 589999999998877653
No 399
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.51 E-value=0.062 Score=34.06 Aligned_cols=15 Identities=33% Similarity=0.501 Sum_probs=13.0
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
+||+||||+...|..
T Consensus 12 ~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 12 DPGVGKTSLASLFAG 26 (175)
T ss_dssp CTTSSHHHHHHHHHC
T ss_pred CCCccHHHHHHHHhc
Confidence 589999999998864
No 400
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.49 E-value=0.068 Score=34.07 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=13.5
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
++||||||+...|...
T Consensus 16 ~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 16 DSGVGKTSLMHRYVND 31 (182)
T ss_dssp CTTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHhC
Confidence 5899999999988653
No 401
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.46 E-value=0.057 Score=33.94 Aligned_cols=14 Identities=36% Similarity=0.508 Sum_probs=12.2
Q ss_pred CCCCChHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIV 14 (153)
Q Consensus 1 ppGsGKst~a~~L~ 14 (153)
+|||||||+...|.
T Consensus 10 ~~~~GKSsli~~l~ 23 (166)
T 3q72_A 10 APGVGKSALARIFG 23 (166)
T ss_dssp STTSSHHHHHHHHC
T ss_pred CCCCCHHHHHHHHc
Confidence 58999999998874
No 402
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.45 E-value=0.069 Score=33.60 Aligned_cols=16 Identities=25% Similarity=0.416 Sum_probs=13.7
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
++||||||+...|...
T Consensus 14 ~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 14 DTGVGKSSIMWRFVED 29 (170)
T ss_dssp CTTSSHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHcC
Confidence 5899999999998764
No 403
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.45 E-value=0.065 Score=33.85 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=13.9
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+..+|.--+
T Consensus 31 ~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 31 QNGSGKSSLLDAILVGL 47 (149)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 67999999999886543
No 404
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.44 E-value=0.069 Score=33.94 Aligned_cols=15 Identities=27% Similarity=0.441 Sum_probs=13.2
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
++||||||+...|..
T Consensus 15 ~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 15 DGGVGKSSLMNRYVT 29 (177)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHc
Confidence 589999999998865
No 405
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.42 E-value=0.063 Score=33.85 Aligned_cols=15 Identities=33% Similarity=0.328 Sum_probs=12.8
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
+|||||||+...|..
T Consensus 10 ~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 10 ESGVGKSTLAGTFGG 24 (169)
T ss_dssp STTSSHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHh
Confidence 589999999998853
No 406
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.41 E-value=0.069 Score=33.61 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=13.1
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
++||||||+...|..
T Consensus 11 ~~~~GKssli~~l~~ 25 (170)
T 1g16_A 11 DSGVGKSCLLVRFVE 25 (170)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHh
Confidence 589999999998875
No 407
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.37 E-value=0.071 Score=33.59 Aligned_cols=16 Identities=13% Similarity=0.106 Sum_probs=13.7
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
++||||||+...|...
T Consensus 14 ~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 14 EGCVGKTSLVLRYCEN 29 (170)
T ss_dssp CTTSCHHHHHHHHHHC
T ss_pred cCCCCHHHHHHHHHcC
Confidence 5899999999988754
No 408
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.36 E-value=0.071 Score=33.51 Aligned_cols=16 Identities=19% Similarity=0.297 Sum_probs=13.4
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
++||||||+...|...
T Consensus 11 ~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 11 EAAVGKSSIVLRFVSN 26 (170)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHhcC
Confidence 5899999999988653
No 409
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.31 E-value=0.072 Score=33.40 Aligned_cols=15 Identities=33% Similarity=0.466 Sum_probs=13.2
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
++||||||+...|..
T Consensus 11 ~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 11 SGGVGKSALTVQFVQ 25 (167)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHc
Confidence 589999999999875
No 410
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.31 E-value=0.076 Score=38.40 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=15.1
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
+||+||||++..++...
T Consensus 54 ~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 54 RPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 69999999999998764
No 411
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=92.23 E-value=0.079 Score=34.79 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=18.2
Q ss_pred CCCChHHHHHHHHHHh---C--Cceechh
Q psy11030 2 PGSGKGTQAEKIVQKY---G--YTHISTG 25 (153)
Q Consensus 2 pGsGKst~a~~L~~~~---~--~~~i~~~ 25 (153)
.|+||||+|-.|+..+ | ...+++|
T Consensus 11 gG~GKTt~a~~la~~la~~g~~vlliD~D 39 (206)
T 4dzz_A 11 GGSGKTTAVINIATALSRSGYNIAVVDTD 39 (206)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCccHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 6999999999998876 3 3445654
No 412
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.21 E-value=0.051 Score=41.82 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=14.4
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+..+
T Consensus 33 pNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 33 KNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CTTSSHHHHHHHHTTSS
T ss_pred CCCCcHHHHHHHHhcCC
Confidence 67999999999997643
No 413
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.17 E-value=0.072 Score=33.53 Aligned_cols=15 Identities=27% Similarity=0.457 Sum_probs=13.1
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
++||||||+...|..
T Consensus 11 ~~~~GKssli~~l~~ 25 (172)
T 2erx_A 11 AGGVGKSSLVLRFVK 25 (172)
T ss_dssp CTTSSHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHc
Confidence 589999999998865
No 414
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.14 E-value=0.078 Score=33.31 Aligned_cols=15 Identities=20% Similarity=0.337 Sum_probs=13.2
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
++||||||+...|..
T Consensus 14 ~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 14 ESAVGKSSLVLRFVK 28 (170)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHc
Confidence 589999999998875
No 415
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.14 E-value=0.077 Score=34.56 Aligned_cols=15 Identities=20% Similarity=0.127 Sum_probs=13.5
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
+|||||||+...|..
T Consensus 31 ~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 31 LDNAGKTTLLHMLKN 45 (190)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhc
Confidence 589999999999976
No 416
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.13 E-value=0.077 Score=34.21 Aligned_cols=16 Identities=13% Similarity=0.167 Sum_probs=13.9
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
++||||||+...|...
T Consensus 15 ~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 15 DSQCGKTALLHVFAKD 30 (184)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHhcC
Confidence 5899999999998764
No 417
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.11 E-value=0.053 Score=41.71 Aligned_cols=17 Identities=35% Similarity=0.341 Sum_probs=14.4
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+..+
T Consensus 302 ~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 302 PNGIGKTTFARILVGEI 318 (538)
T ss_dssp CTTSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999997643
No 418
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=92.09 E-value=0.069 Score=37.06 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=13.8
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
+|||||||+...|...
T Consensus 11 ~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 11 NPNVGKTTIFNALTGL 26 (271)
T ss_dssp CSSSSHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHhCC
Confidence 6899999999999653
No 419
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=92.03 E-value=0.043 Score=42.63 Aligned_cols=17 Identities=35% Similarity=0.540 Sum_probs=15.0
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+.-+
T Consensus 378 ~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 378 PSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp CTTSSSTHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhcCc
Confidence 68999999999997755
No 420
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.02 E-value=0.083 Score=33.59 Aligned_cols=16 Identities=31% Similarity=0.545 Sum_probs=13.8
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
++||||||+...|...
T Consensus 17 ~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 17 GGGVGKSALTIQFIQS 32 (181)
T ss_dssp CTTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHhC
Confidence 4799999999998764
No 421
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.00 E-value=0.068 Score=41.74 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=14.5
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+-.+
T Consensus 111 pNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 111 TNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CTTSSHHHHHHHHHTSS
T ss_pred CCCChHHHHHHHHhcCC
Confidence 68999999999997643
No 422
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=92.00 E-value=0.085 Score=35.23 Aligned_cols=16 Identities=19% Similarity=0.194 Sum_probs=14.3
Q ss_pred CCCChHHHHHHHHHHh
Q psy11030 2 PGSGKGTQAEKIVQKY 17 (153)
Q Consensus 2 pGsGKst~a~~L~~~~ 17 (153)
+|+||||++--|+..+
T Consensus 11 gGvGKTt~a~nLa~~l 26 (224)
T 1byi_A 11 TEVGKTVASCALLQAA 26 (224)
T ss_dssp TTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 6999999999998776
No 423
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.99 E-value=0.081 Score=34.16 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=13.7
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
++||||||+...|...
T Consensus 29 ~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 29 AGGVGKSALTIQLIQN 44 (190)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHcC
Confidence 4799999999999764
No 424
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.94 E-value=0.047 Score=42.47 Aligned_cols=17 Identities=35% Similarity=0.509 Sum_probs=14.9
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+..+
T Consensus 389 ~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 389 PTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CTTSSTTHHHHHHTTSS
T ss_pred CCCCcHHHHHHHHhcCc
Confidence 68999999999997755
No 425
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.93 E-value=0.071 Score=41.00 Aligned_cols=17 Identities=24% Similarity=0.165 Sum_probs=14.6
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+..+
T Consensus 320 ~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 320 PNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp CTTSSHHHHHHHHHTSS
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 68999999999997643
No 426
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=91.92 E-value=0.06 Score=38.18 Aligned_cols=15 Identities=27% Similarity=0.373 Sum_probs=12.9
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
|+|+||||+.+.|..
T Consensus 26 ~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 26 ESGLGKSTLINSLFL 40 (301)
T ss_dssp ETTSSHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHhC
Confidence 589999999998753
No 427
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=91.86 E-value=0.094 Score=38.27 Aligned_cols=17 Identities=24% Similarity=0.124 Sum_probs=13.9
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
++||||||+++.+.-.+
T Consensus 41 ~~~SGKST~~kq~~i~~ 57 (362)
T 1zcb_A 41 AGESGKSTFLKQMRIIH 57 (362)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHh
Confidence 47999999999995444
No 428
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.83 E-value=0.096 Score=32.79 Aligned_cols=16 Identities=25% Similarity=0.075 Sum_probs=13.6
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
++||||||+...|...
T Consensus 8 ~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 8 LDAAGKTTILYKLKLG 23 (164)
T ss_dssp STTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHcC
Confidence 5899999999998653
No 429
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.83 E-value=0.083 Score=33.58 Aligned_cols=15 Identities=27% Similarity=0.253 Sum_probs=13.1
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
+|||||||+...|..
T Consensus 14 ~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 14 DGASGKTSLTTCFAQ 28 (178)
T ss_dssp CTTSSHHHHHHHHHG
T ss_pred cCCCCHHHHHHHHHh
Confidence 589999999998865
No 430
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=91.83 E-value=0.088 Score=33.40 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=13.7
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
++||||||+...|...
T Consensus 23 ~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 23 DMGVGKSCLLHQFTEK 38 (179)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHcC
Confidence 4799999999998764
No 431
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.82 E-value=0.089 Score=39.45 Aligned_cols=17 Identities=29% Similarity=0.304 Sum_probs=15.1
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
+||+||||+|..++...
T Consensus 205 ~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 205 RPSMGKTAFALKQAKNM 221 (444)
T ss_dssp CSSSSHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHH
Confidence 69999999999998766
No 432
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.81 E-value=0.09 Score=33.72 Aligned_cols=16 Identities=25% Similarity=0.489 Sum_probs=13.7
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
++||||||+...|...
T Consensus 12 ~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 12 ADGVGKSALTIQLIQN 27 (189)
T ss_dssp CTTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHhC
Confidence 5899999999999753
No 433
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=91.79 E-value=0.089 Score=33.86 Aligned_cols=15 Identities=20% Similarity=0.282 Sum_probs=13.3
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
++||||||+...|..
T Consensus 19 ~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 19 DSGVGKTSVLYQYTD 33 (195)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhc
Confidence 589999999999875
No 434
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.73 E-value=0.092 Score=33.08 Aligned_cols=15 Identities=27% Similarity=0.235 Sum_probs=13.1
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
++||||||+...|..
T Consensus 15 ~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 15 LDGAGKTTILYRLQV 29 (171)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhc
Confidence 589999999999865
No 435
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=91.72 E-value=0.12 Score=35.28 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=16.2
Q ss_pred CCCCChHHHHHHHHHHhCC
Q psy11030 1 GPGSGKGTQAEKIVQKYGY 19 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~ 19 (153)
|+|+|||.++..++..++.
T Consensus 116 ~tG~GKT~~a~~~~~~~~~ 134 (237)
T 2fz4_A 116 PTGSGKTHVAMAAINELST 134 (237)
T ss_dssp SSSTTHHHHHHHHHHHSCS
T ss_pred CCCCCHHHHHHHHHHHcCC
Confidence 7899999999988887753
No 436
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.71 E-value=0.093 Score=33.30 Aligned_cols=15 Identities=13% Similarity=0.217 Sum_probs=13.1
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
++||||||+...|..
T Consensus 22 ~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 22 EQSVGKTSLITRFMY 36 (179)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHc
Confidence 589999999998874
No 437
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=91.70 E-value=0.076 Score=41.44 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=13.5
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
|+||||||+.+.|+.
T Consensus 53 ~nGsGKSTLL~~I~G 67 (608)
T 3szr_A 53 DQSSGKSSVLEALSG 67 (608)
T ss_dssp CTTSCHHHHHHHHHS
T ss_pred CCCChHHHHHHHHhC
Confidence 689999999999965
No 438
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=91.68 E-value=0.083 Score=47.82 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=19.1
Q ss_pred CCCCChHHHHHHHHHHhCCce
Q psy11030 1 GPGSGKGTQAEKIVQKYGYTH 21 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~~~~~ 21 (153)
|||+|||++++.||+.+|.++
T Consensus 653 paGtGKTe~vk~LA~~lg~~~ 673 (2695)
T 4akg_A 653 PAGTGKTETVKAFGQNLGRVV 673 (2695)
T ss_dssp CTTSCHHHHHHHHHHTTTCCC
T ss_pred CCCCCcHHHHHHHHHHhCCcE
Confidence 799999999999999998654
No 439
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=91.68 E-value=0.023 Score=40.60 Aligned_cols=15 Identities=27% Similarity=0.384 Sum_probs=13.1
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
||||||||+.+.|..
T Consensus 181 ~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 181 QSGVGKSSLLNAISP 195 (307)
T ss_dssp SHHHHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHhcc
Confidence 689999999998854
No 440
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.65 E-value=0.095 Score=33.94 Aligned_cols=16 Identities=13% Similarity=0.285 Sum_probs=14.0
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
++||||||+...|...
T Consensus 15 ~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 15 ESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CTTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHhC
Confidence 5899999999999764
No 441
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.64 E-value=0.082 Score=33.63 Aligned_cols=15 Identities=20% Similarity=0.377 Sum_probs=12.6
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
++||||||+...|..
T Consensus 17 ~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 17 DSGVGKSSLLLRFAD 31 (181)
T ss_dssp CTTSCHHHHHHHHCS
T ss_pred CCCCCHHHHHHHHhc
Confidence 589999999998853
No 442
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.64 E-value=0.094 Score=33.63 Aligned_cols=16 Identities=25% Similarity=0.555 Sum_probs=13.6
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
++||||||+...|...
T Consensus 18 ~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 18 NAGTGKSCLLHQFIEK 33 (186)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHcC
Confidence 5899999999988753
No 443
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.64 E-value=0.079 Score=41.37 Aligned_cols=17 Identities=24% Similarity=0.165 Sum_probs=14.6
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+..+
T Consensus 390 ~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 390 PNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp CTTSSHHHHHHHHHTSS
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 68999999999997643
No 444
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=91.57 E-value=0.09 Score=38.95 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=14.8
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+||||+++.|++..
T Consensus 182 ~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 182 PPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CSSSSHHHHHHHHHHHH
T ss_pred CCCCChhHHHHHHHHHH
Confidence 79999999999988753
No 445
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=91.51 E-value=0.084 Score=37.37 Aligned_cols=15 Identities=33% Similarity=0.525 Sum_probs=13.4
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
+||+||||+...|..
T Consensus 16 ~~nvGKSTLln~L~g 30 (301)
T 1ega_A 16 RPNVGKSTLLNKLLG 30 (301)
T ss_dssp SSSSSHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHC
Confidence 689999999999965
No 446
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.51 E-value=0.067 Score=41.77 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=14.4
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+-.+
T Consensus 125 ~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 125 PNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CTTSSHHHHHHHHTTSS
T ss_pred CCCChHHHHHHHHhCCC
Confidence 68999999999997643
No 447
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.50 E-value=0.095 Score=33.31 Aligned_cols=15 Identities=27% Similarity=0.237 Sum_probs=13.0
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
++||||||+...|..
T Consensus 16 ~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 16 HVDHGKTTLLDAIRH 30 (178)
T ss_dssp CTTTTHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHhC
Confidence 589999999998865
No 448
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=91.41 E-value=0.072 Score=37.88 Aligned_cols=17 Identities=6% Similarity=-0.230 Sum_probs=15.4
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+||||+|+.|++.+
T Consensus 26 p~G~GKtt~a~~la~~~ 42 (305)
T 2gno_A 26 EDLSYPREVSLELPEYV 42 (305)
T ss_dssp SSSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 79999999999999863
No 449
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=91.41 E-value=0.1 Score=33.33 Aligned_cols=16 Identities=19% Similarity=0.300 Sum_probs=13.6
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
++||||||+...|...
T Consensus 26 ~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 26 SGGVGKSALTLQFMYD 41 (187)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHhhC
Confidence 5799999999998753
No 450
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.40 E-value=0.11 Score=33.19 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=13.4
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
++||||||+...|...
T Consensus 20 ~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 20 DVGAGKSSLVLRFVKD 35 (181)
T ss_dssp CTTSCHHHHHHHHHHC
T ss_pred cCCCCHHHHHHHHHcC
Confidence 5899999999988753
No 451
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=91.40 E-value=0.28 Score=31.26 Aligned_cols=44 Identities=16% Similarity=0.095 Sum_probs=32.3
Q ss_pred CCCcceeecCCCCCchHHHHHHHH---hCCCCeEEEeecCcchhh-hc
Q psy11030 109 PNSKGYLIDGYPREKAQGEQFERE---INSPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 109 ~~~~~~~~dg~~~~~~~~~~~~~~---~~~~~~vi~l~~~~~~~~-~l 152 (153)
.....+++|+++....+...+.+. ...+..+|++++|.+++. |+
T Consensus 76 ~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~ 123 (181)
T 1ly1_A 76 DSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRN 123 (181)
T ss_dssp SSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHH
T ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHH
Confidence 345678999999887766655432 224558999999999988 76
No 452
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.35 E-value=0.11 Score=33.15 Aligned_cols=16 Identities=19% Similarity=0.239 Sum_probs=13.5
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
++||||||+...|...
T Consensus 18 ~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 18 DSGVGKTCLLVRFKDG 33 (180)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHhC
Confidence 5899999999988653
No 453
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.34 E-value=0.088 Score=34.10 Aligned_cols=16 Identities=13% Similarity=0.364 Sum_probs=13.4
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
++||||||+...|...
T Consensus 31 ~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 31 RSNVGKSSFINSLINR 46 (195)
T ss_dssp BTTSSHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHhCC
Confidence 4899999999988653
No 454
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.33 E-value=0.11 Score=33.28 Aligned_cols=15 Identities=13% Similarity=0.005 Sum_probs=13.1
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
++||||||+...|..
T Consensus 13 ~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 13 DGAVGKTCLLISYTT 27 (186)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHc
Confidence 589999999998875
No 455
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.32 E-value=0.089 Score=41.08 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=14.4
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+.-+
T Consensus 386 ~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 386 ENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp CTTSSHHHHHHHHHTSS
T ss_pred CCCCcHHHHHHHHhcCC
Confidence 68999999999997643
No 456
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=91.31 E-value=0.11 Score=33.31 Aligned_cols=16 Identities=31% Similarity=0.412 Sum_probs=13.6
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
++||||||+...|...
T Consensus 26 ~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 26 DGGVGKSALTIQFFQK 41 (183)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHhC
Confidence 5899999999998753
No 457
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.29 E-value=0.09 Score=33.82 Aligned_cols=15 Identities=20% Similarity=0.244 Sum_probs=13.1
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
++||||||+...|..
T Consensus 9 ~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 9 RSNVGKSTLIYRLTG 23 (190)
T ss_dssp BTTSSHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHhC
Confidence 489999999998865
No 458
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=91.29 E-value=0.11 Score=42.01 Aligned_cols=17 Identities=35% Similarity=0.595 Sum_probs=13.8
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|||+||||+...+...+
T Consensus 379 ppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 379 PPGTGKTVTSATIVYHL 395 (800)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 89999999877776654
No 459
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.28 E-value=0.11 Score=33.69 Aligned_cols=16 Identities=19% Similarity=0.372 Sum_probs=13.6
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
++||||||+...|...
T Consensus 33 ~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 33 ESGVGKTNLLSRFTRN 48 (193)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHhcC
Confidence 5899999999988763
No 460
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=91.23 E-value=0.12 Score=34.47 Aligned_cols=16 Identities=31% Similarity=0.331 Sum_probs=14.6
Q ss_pred CCCChHHHHHHHHHHh
Q psy11030 2 PGSGKGTQAEKIVQKY 17 (153)
Q Consensus 2 pGsGKst~a~~L~~~~ 17 (153)
.|+||||++..||..+
T Consensus 10 GGvGKTT~a~~LA~~l 25 (209)
T 3cwq_A 10 GGVGKTTTAVHLSAYL 25 (209)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHH
Confidence 5999999999999877
No 461
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=91.21 E-value=0.092 Score=40.43 Aligned_cols=15 Identities=33% Similarity=0.441 Sum_probs=13.0
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
|+|+||||+|..++.
T Consensus 155 ~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 155 MAGCGKSVLAAEAVR 169 (591)
T ss_dssp CTTSSHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHh
Confidence 689999999998853
No 462
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.10 E-value=0.08 Score=39.42 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=13.7
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
|+||||||+.+.|+..
T Consensus 39 ~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 39 ESGLGKSTLINSLFLT 54 (418)
T ss_dssp CTTSSHHHHHHHHTTC
T ss_pred CCCCcHHHHHHHHhCC
Confidence 6899999999998653
No 463
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.00 E-value=0.12 Score=33.78 Aligned_cols=16 Identities=31% Similarity=0.480 Sum_probs=13.7
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
++||||||+...|...
T Consensus 16 ~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 16 DSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CTTSSHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHcC
Confidence 5899999999998764
No 464
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=91.00 E-value=0.042 Score=42.58 Aligned_cols=17 Identities=35% Similarity=0.417 Sum_probs=14.8
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+..+
T Consensus 375 ~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 375 MSGGGKSTLINLIPRFY 391 (578)
T ss_dssp STTSSHHHHHTTTTTSS
T ss_pred CCCChHHHHHHHHhcCC
Confidence 68999999999987755
No 465
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=90.99 E-value=0.11 Score=39.98 Aligned_cols=15 Identities=33% Similarity=0.483 Sum_probs=13.7
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
++|+||||+|+.+++
T Consensus 160 ~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 160 RAGSGKSVIASQALS 174 (549)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 579999999999996
No 466
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=90.96 E-value=0.1 Score=33.60 Aligned_cols=16 Identities=19% Similarity=0.248 Sum_probs=13.5
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
++||||||+...|...
T Consensus 24 ~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 24 LDNAGKTTLLKQLASE 39 (181)
T ss_dssp STTSSHHHHHHHHCCS
T ss_pred CCCCCHHHHHHHHhcC
Confidence 5899999999988653
No 467
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=90.95 E-value=0.12 Score=33.39 Aligned_cols=15 Identities=20% Similarity=0.317 Sum_probs=12.6
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
++||||||+...+..
T Consensus 28 ~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 28 NLSSGKSALVHRYLT 42 (184)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhc
Confidence 479999999987765
No 468
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=90.94 E-value=0.11 Score=35.16 Aligned_cols=15 Identities=27% Similarity=0.530 Sum_probs=13.0
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
++||||||+...|..
T Consensus 37 ~~g~GKStlin~l~g 51 (239)
T 3lxx_A 37 KTGAGKSATGNSILG 51 (239)
T ss_dssp CTTSSHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHcC
Confidence 589999999998864
No 469
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=90.91 E-value=0.14 Score=34.58 Aligned_cols=17 Identities=24% Similarity=0.176 Sum_probs=14.8
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|+||||||.+-.++.++
T Consensus 36 ~MgsGKTT~lL~~a~r~ 52 (214)
T 2j9r_A 36 SMFSGKSEELIRRVRRT 52 (214)
T ss_dssp STTSCHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHH
Confidence 46999999999888877
No 470
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=90.91 E-value=0.1 Score=33.64 Aligned_cols=16 Identities=13% Similarity=0.304 Sum_probs=13.4
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
++||||||+...|...
T Consensus 31 ~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 31 RSNVGKSSLLNALFNR 46 (195)
T ss_dssp BTTSSHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHcC
Confidence 4799999999988654
No 471
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.88 E-value=0.13 Score=33.26 Aligned_cols=17 Identities=12% Similarity=0.087 Sum_probs=14.2
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
++||||||+...|...-
T Consensus 31 ~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 31 NSSVGKTSFLFRYADDT 47 (191)
T ss_dssp STTSSHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHhcCC
Confidence 58999999999987643
No 472
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.87 E-value=0.13 Score=33.51 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=13.7
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
++||||||+...|...
T Consensus 36 ~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 36 RAGVGKSALVVRFLTK 51 (196)
T ss_dssp CTTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHhC
Confidence 5899999999998764
No 473
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=90.83 E-value=0.053 Score=42.09 Aligned_cols=17 Identities=35% Similarity=0.358 Sum_probs=14.9
Q ss_pred CCCCChHHHHHHHHHHh
Q psy11030 1 GPGSGKGTQAEKIVQKY 17 (153)
Q Consensus 1 ppGsGKst~a~~L~~~~ 17 (153)
|.||||||+.+.|+..+
T Consensus 377 ~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 377 ETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp SSSSSHHHHHHTTTTSS
T ss_pred CCCCCHHHHHHHHhCCc
Confidence 68999999999997755
No 474
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=90.81 E-value=0.13 Score=33.26 Aligned_cols=16 Identities=13% Similarity=0.131 Sum_probs=13.5
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
++|+||||+...|...
T Consensus 30 ~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 30 NSSVGKTSFLFRYADD 45 (189)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHcC
Confidence 5899999999988753
No 475
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=90.80 E-value=0.13 Score=34.07 Aligned_cols=16 Identities=13% Similarity=0.167 Sum_probs=13.9
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
++||||||+...|...
T Consensus 36 ~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 36 DSQCGKTALLHVFAKD 51 (205)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHhcC
Confidence 5899999999999764
No 476
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=90.80 E-value=0.13 Score=33.30 Aligned_cols=16 Identities=19% Similarity=0.322 Sum_probs=13.7
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
++|+||||+...|...
T Consensus 24 ~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 24 DSGVGKSCLLLRFADD 39 (196)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHcC
Confidence 5899999999998753
No 477
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=90.80 E-value=0.26 Score=33.52 Aligned_cols=41 Identities=24% Similarity=0.563 Sum_probs=31.1
Q ss_pred CcceeecCCCCCchHHHHHHHHhCCCCeEEEeecCcchhh-hc
Q psy11030 111 SKGYLIDGYPREKAQGEQFEREINSPTGIVYFEVPDDVMT-IL 152 (153)
Q Consensus 111 ~~~~~~dg~~~~~~~~~~~~~~~~~~~~vi~l~~~~~~~~-~l 152 (153)
..+++++|+|+...+++.+.. ...+++++++++|.+++. |+
T Consensus 104 ~~~~il~g~~~~~~~~~~l~~-~~~~~~vi~L~~~~~~~l~r~ 145 (246)
T 2bbw_A 104 GQHWLLDGFPRTLGQAEALDK-ICEVDLVISLNIPFETLKDRL 145 (246)
T ss_dssp TSCEEEESCCCSHHHHHHHHT-TCCCCEEEEEECCHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHh-hcCCCEEEEEECCHHHHHHHH
Confidence 456788999988766665543 357899999999998876 54
No 478
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=90.78 E-value=0.13 Score=33.36 Aligned_cols=16 Identities=31% Similarity=0.480 Sum_probs=13.6
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
++||||||+...|...
T Consensus 31 ~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 31 DTGVGKSSIVCRFVQD 46 (192)
T ss_dssp CTTSSHHHHHHHHHHC
T ss_pred cCCCCHHHHHHHHhcC
Confidence 5899999999988753
No 479
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=90.75 E-value=0.54 Score=33.17 Aligned_cols=19 Identities=21% Similarity=0.274 Sum_probs=16.1
Q ss_pred CCCChHHHHHHHHHHhCCc
Q psy11030 2 PGSGKGTQAEKIVQKYGYT 20 (153)
Q Consensus 2 pGsGKst~a~~L~~~~~~~ 20 (153)
-||||+++.+.|.+.++-.
T Consensus 84 DaAGKgg~Ik~l~~~ldPR 102 (289)
T 3rhf_A 84 DTAGKGGIVSHVVGAMDPQ 102 (289)
T ss_dssp TTSSHHHHHHHHHHHSCGG
T ss_pred CCCChHHHHHHHHHhcCcC
Confidence 3899999999999998533
No 480
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=90.73 E-value=0.13 Score=32.75 Aligned_cols=16 Identities=13% Similarity=0.025 Sum_probs=13.4
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
++|+||||+...+...
T Consensus 16 ~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 16 DGAVGKTCLLISYTSN 31 (182)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHhcC
Confidence 5899999999988753
No 481
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.71 E-value=0.13 Score=33.91 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=13.5
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
++||||||+...|...
T Consensus 34 ~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 34 NAGVGKTCLVRRFTQG 49 (201)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHhC
Confidence 4899999999988753
No 482
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=90.65 E-value=0.13 Score=33.60 Aligned_cols=16 Identities=25% Similarity=0.210 Sum_probs=13.7
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
++||||||+...|...
T Consensus 32 ~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 32 YRCVGKTSLAHQFVEG 47 (201)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCcCHHHHHHHHHhC
Confidence 4899999999998763
No 483
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=90.64 E-value=0.092 Score=34.45 Aligned_cols=15 Identities=20% Similarity=0.131 Sum_probs=12.7
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
+|||||||+...|..
T Consensus 33 ~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 33 LDNAGKTTLLHMLKD 47 (198)
T ss_dssp ETTSSHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHhc
Confidence 489999999998853
No 484
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=90.63 E-value=0.13 Score=33.49 Aligned_cols=16 Identities=19% Similarity=0.300 Sum_probs=13.5
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
++||||||+...|...
T Consensus 22 ~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 22 SGGVGKSALTLQFMYD 37 (206)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHhC
Confidence 5899999999988753
No 485
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=90.63 E-value=0.13 Score=32.91 Aligned_cols=15 Identities=20% Similarity=0.226 Sum_probs=13.0
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
++|+||||+...|..
T Consensus 14 ~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 14 YRSVGKSSLTIQFVE 28 (181)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHc
Confidence 589999999998874
No 486
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=90.56 E-value=0.15 Score=34.35 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=14.5
Q ss_pred CCCChHHHHHHHHHHh
Q psy11030 2 PGSGKGTQAEKIVQKY 17 (153)
Q Consensus 2 pGsGKst~a~~L~~~~ 17 (153)
.|+||||+|-.|+..+
T Consensus 12 gGvGKTt~a~~LA~~l 27 (237)
T 1g3q_A 12 GGTGKTTVTANLSVAL 27 (237)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 6999999999998877
No 487
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=90.51 E-value=0.14 Score=33.00 Aligned_cols=15 Identities=13% Similarity=0.178 Sum_probs=13.0
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
++||||||+...|..
T Consensus 28 ~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 28 DSNVGKTCLTYRFCA 42 (189)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHc
Confidence 479999999998865
No 488
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=90.51 E-value=0.12 Score=33.21 Aligned_cols=15 Identities=27% Similarity=0.151 Sum_probs=13.0
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
++||||||+...|..
T Consensus 26 ~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 26 LDNAGKTTILKKFNG 40 (186)
T ss_dssp STTSSHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHhc
Confidence 589999999998865
No 489
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=90.50 E-value=0.14 Score=41.38 Aligned_cols=15 Identities=40% Similarity=0.660 Sum_probs=11.9
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
|||+||||+...+..
T Consensus 383 ppGTGKT~~i~~~i~ 397 (802)
T 2xzl_A 383 PPGTGKTVTSATIVY 397 (802)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 899999988766544
No 490
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=90.48 E-value=0.14 Score=33.00 Aligned_cols=16 Identities=19% Similarity=0.343 Sum_probs=13.6
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
++|+||||+...|...
T Consensus 23 ~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 23 ESGVGKSSLLLRFTDD 38 (195)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHcC
Confidence 5899999999998764
No 491
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=90.44 E-value=0.15 Score=33.04 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=13.4
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
++||||||+...|...
T Consensus 29 ~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 29 RRGAGKSALTVKFLTK 44 (187)
T ss_dssp CTTSSHHHHHHHHHHS
T ss_pred CCCCcHHHHHHHHHhC
Confidence 4799999999888753
No 492
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=90.44 E-value=0.15 Score=36.51 Aligned_cols=16 Identities=25% Similarity=0.173 Sum_probs=14.3
Q ss_pred CCCChHHHHHHHHHHh
Q psy11030 2 PGSGKGTQAEKIVQKY 17 (153)
Q Consensus 2 pGsGKst~a~~L~~~~ 17 (153)
+|+||||+|..||..+
T Consensus 23 GGvGKTTvA~~LA~~l 38 (324)
T 3zq6_A 23 GGVGKTTISAATALWM 38 (324)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHH
Confidence 6999999999998766
No 493
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=90.42 E-value=0.14 Score=33.03 Aligned_cols=15 Identities=33% Similarity=0.131 Sum_probs=13.2
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
++||||||+...|..
T Consensus 30 ~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 30 LQYSGKTTFVNVIAS 44 (188)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHc
Confidence 479999999999875
No 494
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.39 E-value=0.15 Score=33.05 Aligned_cols=15 Identities=27% Similarity=0.457 Sum_probs=13.2
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
++||||||+...|..
T Consensus 16 ~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 16 AGGVGKSSLVLRFVK 30 (199)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHc
Confidence 589999999999876
No 495
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=90.38 E-value=0.13 Score=37.88 Aligned_cols=15 Identities=33% Similarity=0.375 Sum_probs=14.0
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
+||+||||+-+.|..
T Consensus 28 ~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 28 MPNVGKSTFFRAITK 42 (392)
T ss_dssp CSSSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHC
Confidence 689999999999987
No 496
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=90.38 E-value=0.15 Score=34.38 Aligned_cols=17 Identities=18% Similarity=0.212 Sum_probs=14.9
Q ss_pred CCCChHHHHHHHHHHhC
Q psy11030 2 PGSGKGTQAEKIVQKYG 18 (153)
Q Consensus 2 pGsGKst~a~~L~~~~~ 18 (153)
.|+||||+|-.||..+.
T Consensus 14 GGvGKTt~a~~LA~~la 30 (245)
T 3ea0_A 14 GGDGGSCIAANFAFALS 30 (245)
T ss_dssp TTSSHHHHHHHHHHHHT
T ss_pred CCcchHHHHHHHHHHHH
Confidence 59999999999988773
No 497
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=90.38 E-value=0.15 Score=33.06 Aligned_cols=15 Identities=20% Similarity=0.297 Sum_probs=13.1
Q ss_pred CCCCChHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQ 15 (153)
Q Consensus 1 ppGsGKst~a~~L~~ 15 (153)
++||||||+...|..
T Consensus 29 ~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 29 DTGVGKSCLLLQFTD 43 (191)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHhc
Confidence 479999999998875
No 498
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=90.33 E-value=0.15 Score=35.11 Aligned_cols=16 Identities=31% Similarity=0.320 Sum_probs=14.6
Q ss_pred CCCChHHHHHHHHHHh
Q psy11030 2 PGSGKGTQAEKIVQKY 17 (153)
Q Consensus 2 pGsGKst~a~~L~~~~ 17 (153)
.|+||||+|-.||..+
T Consensus 37 GGvGKTT~a~~LA~~l 52 (267)
T 3k9g_A 37 GGVGKSTSAIILATLL 52 (267)
T ss_dssp SSSCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHH
Confidence 5999999999998887
No 499
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=90.30 E-value=0.16 Score=34.68 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=14.3
Q ss_pred CCCChHHHHHHHHHHh
Q psy11030 2 PGSGKGTQAEKIVQKY 17 (153)
Q Consensus 2 pGsGKst~a~~L~~~~ 17 (153)
.|+||||+|-.||..+
T Consensus 12 gGvGKTt~a~~LA~~l 27 (260)
T 3q9l_A 12 GGVGKTTSSAAIATGL 27 (260)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHH
Confidence 6999999999998877
No 500
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=90.28 E-value=0.15 Score=33.64 Aligned_cols=16 Identities=19% Similarity=0.056 Sum_probs=13.8
Q ss_pred CCCCChHHHHHHHHHH
Q psy11030 1 GPGSGKGTQAEKIVQK 16 (153)
Q Consensus 1 ppGsGKst~a~~L~~~ 16 (153)
++||||||+...|...
T Consensus 15 ~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 15 LCDSGKTLLFVRLLTG 30 (214)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHhCC
Confidence 5899999999998764
Done!