RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11030
(153 letters)
>gnl|CDD|130427 TIGR01360, aden_kin_iso1, adenylate kinase, isozyme 1 subfamily.
Members of this family are adenylate kinase, EC 2.7.4.3.
This clade is found only in eukaryotes and includes
human adenylate kinase isozyme 1 (myokinase). Within the
adenylate kinase superfamily, this set appears
specifically closely related to a subfamily of
eukaryotic UMP-CMP kinases (TIGR01359), rather than to
the large clade of bacterial, archaeal, and eukaryotic
adenylate kinase family members in TIGR01351.
Length = 188
Score = 144 bits (366), Expect = 9e-45
Identities = 59/93 (63%), Positives = 71/93 (76%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMEL 60
GPGSGKGTQ EKIV+KYG+TH+STGDLLR EV SGS RG L +M+ G LV D V++L
Sbjct: 11 GPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDL 70
Query: 61 LGEKVLKELPNSKGYLIDGYPREKAQGEQFERE 93
L + ++ L SKG+LIDGYPRE QGE+FER
Sbjct: 71 LKDAMVAALGTSKGFLIDGYPREVKQGEEFERR 103
>gnl|CDD|238713 cd01428, ADK, Adenylate kinase (ADK) catalyzes the reversible
phosphoryl transfer from adenosine triphosphates (ATP)
to adenosine monophosphates (AMP) and to yield adenosine
diphosphates (ADP). This enzyme is required for the
biosynthesis of ADP and is essential for homeostasis of
adenosine phosphates.
Length = 194
Score = 123 bits (310), Expect = 3e-36
Identities = 51/115 (44%), Positives = 73/115 (63%), Gaps = 9/115 (7%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMEL 60
PGSGKGTQAE++ +KYG HISTGDLLREE+ SG+ G + + G LV ++V++L
Sbjct: 7 PPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKL 66
Query: 61 LGEKVLKELPNSKGYLIDGYPREKAQGEQFERE-------DVVMEL-LGEKVLKE 107
L E+ LK+ KG+++DG+PR Q E + D V+EL + ++VL E
Sbjct: 67 LKER-LKKPDCKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIE 120
>gnl|CDD|201213 pfam00406, ADK, Adenylate kinase.
Length = 186
Score = 117 bits (296), Expect = 3e-34
Identities = 46/92 (50%), Positives = 61/92 (66%), Gaps = 1/92 (1%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMEL 60
PG+GKGTQAE+IVQKYG H+STGDLLR EV SG+ G + + M G LV +VV+ L
Sbjct: 4 PPGAGKGTQAERIVQKYGIPHLSTGDLLRAEVKSGTELGKEAKEYMDKGELVPDEVVIGL 63
Query: 61 LGEKVLKELPNSKGYLIDGYPREKAQGEQFER 92
+ E+ L++ G+L+DG+PR Q E E
Sbjct: 64 VKER-LEQNDCKNGFLLDGFPRTVPQAEALEE 94
>gnl|CDD|234711 PRK00279, adk, adenylate kinase; Reviewed.
Length = 215
Score = 107 bits (269), Expect = 8e-30
Identities = 42/106 (39%), Positives = 61/106 (57%), Gaps = 9/106 (8%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PG+GKGTQA+ I +KYG HISTGD+LR V +G+ G + M G LV ++V+ L+
Sbjct: 9 PGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLV 68
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQGEQFERE--------DVVMEL 99
E+ L + G+L+DG+PR Q E + D V+E+
Sbjct: 69 KER-LAQPDCKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEI 113
>gnl|CDD|233369 TIGR01351, adk, adenylate kinase. Adenylate kinase (EC 2.7.4.3)
converts ATP + AMP to ADP + ADP, that is, uses ATP as a
phosphate donor for AMP. Most members of this family
are known or believed to be adenylate kinase. However,
some members accept other nucleotide triphosphates as
donors, may be unable to use ATP, and may fail to
complement adenylate kinase mutants. An example of a
nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10)
is a GTP:AMP phosphotransferase. This family is
designated subfamily rather than equivalog for this
reason [Purines, pyrimidines, nucleosides, and
nucleotides, Nucleotide and nucleoside
interconversions].
Length = 210
Score = 106 bits (267), Expect = 1e-29
Identities = 40/90 (44%), Positives = 61/90 (67%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PGSGKGTQA++I +KYG HISTGDLLR E+ +G+ G + M+ G LV ++V +L+
Sbjct: 8 PGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLV 67
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQGEQFE 91
E++ + N G+++DG+PR +Q E +
Sbjct: 68 KERLTQNQDNENGFILDGFPRTLSQAEALD 97
>gnl|CDD|130426 TIGR01359, UMP_CMP_kin_fam, UMP-CMP kinase family. This
subfamily of the adenylate kinase superfamily contains
examples of UMP-CMP kinase, as well as others proteins
with unknown specificity, some currently designated
adenylate kinase. All known members are eukaryotic.
Length = 183
Score = 94.0 bits (234), Expect = 5e-25
Identities = 42/92 (45%), Positives = 64/92 (69%), Gaps = 2/92 (2%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMEL 60
GPGSGKGTQ KIV+ +G+TH+S GDLLR E+ SGS G + ++K+G +V ++V ++L
Sbjct: 7 GPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKL 66
Query: 61 LGEKVLKELPNSKGYLIDGYPREKAQGEQFER 92
L + ++ SK +LIDG+PR + E +E+
Sbjct: 67 L-KNAIQA-DGSKKFLIDGFPRNEENLEAWEK 96
>gnl|CDD|223637 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide
transport and metabolism].
Length = 178
Score = 92.0 bits (229), Expect = 3e-24
Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PG+GK T A+K+ +K G H+ TGD+LR + + G ++ K + G LV ++V L+
Sbjct: 9 PGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLV 68
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQGEQFERE 93
E+ L E G+++DG+PR Q +R
Sbjct: 69 KER-LDEADCKAGFILDGFPRTLCQARALKRL 99
>gnl|CDD|178435 PLN02842, PLN02842, nucleotide kinase.
Length = 505
Score = 90.7 bits (225), Expect = 4e-22
Identities = 42/91 (46%), Positives = 59/91 (64%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
P SGKGTQ E IV K+G HISTGDLLR EV++G+ G + M G LV ++V+ ++
Sbjct: 6 PASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMV 65
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQGEQFER 92
++ +E KG+L+DGYPR AQ + E+
Sbjct: 66 TGRLSREDAKEKGWLLDGYPRSFAQAQSLEK 96
>gnl|CDD|172997 PRK14531, PRK14531, adenylate kinase; Provisional.
Length = 183
Score = 86.0 bits (213), Expect = 7e-22
Identities = 46/90 (51%), Positives = 60/90 (66%), Gaps = 2/90 (2%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PG+GKGTQA ++ +G H+STGDLLR EV +GSA G + VM G LVS +V+ ++
Sbjct: 11 PGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIV 70
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQGEQFE 91
E LK L NS G+L+DG+PR AQ E E
Sbjct: 71 -ESQLKAL-NSGGWLLDGFPRTVAQAEALE 98
>gnl|CDD|215125 PLN02200, PLN02200, adenylate kinase family protein.
Length = 234
Score = 86.5 bits (214), Expect = 1e-21
Identities = 41/92 (44%), Positives = 63/92 (68%), Gaps = 2/92 (2%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMEL 60
GPGSGKGTQ EKIV+ +G+ H+S GDLLR E+ S S GA + +K+G +V ++V ++L
Sbjct: 51 GPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKL 110
Query: 61 LGEKVLKELPNSKGYLIDGYPREKAQGEQFER 92
+ +++ E ++ +LIDG+PR + FER
Sbjct: 111 IQKEM--ESSDNNKFLIDGFPRTEENRIAFER 140
>gnl|CDD|184729 PRK14532, PRK14532, adenylate kinase; Provisional.
Length = 188
Score = 82.2 bits (203), Expect = 2e-20
Identities = 40/103 (38%), Positives = 63/103 (61%), Gaps = 4/103 (3%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
P +GKGTQA+++V++ G +STGD+LR + SGS G + +M G LVS ++V+ L+
Sbjct: 9 PAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALI 68
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQGEQFEREDVVMELLGEKV 104
E+ L E + G + DG+PR AQ E D ++ G+K+
Sbjct: 69 EER-LPEAEAAGGAIFDGFPRTVAQAEAL---DKMLASRGQKI 107
>gnl|CDD|215253 PLN02459, PLN02459, probable adenylate kinase.
Length = 261
Score = 82.6 bits (204), Expect = 7e-20
Identities = 43/111 (38%), Positives = 65/111 (58%), Gaps = 5/111 (4%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PG GKGT A ++ + G HI+TGDL+REE+ S GA L +++ G LV +++ LL
Sbjct: 38 PGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLL 97
Query: 62 GEKVLK-ELPNSKGYLIDGYPREKAQGEQFERE---DVVMEL-LGEKVLKE 107
+++ E G+++DG+PR Q E E D+V+ L L E+VL E
Sbjct: 98 SKRLEAGEEEGESGFILDGFPRTVRQAEILEGVTDIDLVVNLKLREEVLVE 148
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional.
Length = 333
Score = 78.0 bits (192), Expect = 8e-18
Identities = 42/106 (39%), Positives = 67/106 (63%), Gaps = 9/106 (8%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PG+GKGTQA+++VQ+YG +STGD+LR V +G+ G +M GGLV +VV+ ++
Sbjct: 9 PGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGII 68
Query: 62 GEKVLKELPNSK-GYLIDGYPREKAQGEQFEREDVVMELLGEKVLK 106
+++ E P++ G+++DG+PR Q E + LL +K LK
Sbjct: 69 SDRI--EQPDAANGFILDGFPRTVPQAEALDA------LLKDKQLK 106
>gnl|CDD|237745 PRK14527, PRK14527, adenylate kinase; Provisional.
Length = 191
Score = 73.3 bits (180), Expect = 6e-17
Identities = 34/91 (37%), Positives = 55/91 (60%), Gaps = 2/91 (2%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PG+GKGTQAE++ Q+ G +STGD+LR+ V G+ G +M+ G LV ++++ L+
Sbjct: 15 PGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALI 74
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQGEQFER 92
+++ P + DG+PR AQ E +R
Sbjct: 75 RDELAGMEPVR--VIFDGFPRTLAQAEALDR 103
>gnl|CDD|172992 PRK14526, PRK14526, adenylate kinase; Provisional.
Length = 211
Score = 72.2 bits (177), Expect = 2e-16
Identities = 29/91 (31%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PGSGKGT A+ + + Y HISTGDL RE + + + G ++ +++++G LV + ++++
Sbjct: 9 PGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIV 68
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQGEQFER 92
+K+ + N+ +++DG+PR Q + ++
Sbjct: 69 EDKI-NTIKNNDNFILDGFPRNINQAKALDK 98
>gnl|CDD|172994 PRK14528, PRK14528, adenylate kinase; Provisional.
Length = 186
Score = 68.5 bits (167), Expect = 4e-15
Identities = 33/87 (37%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PG+GKGTQA+ + ++ ISTGD+LRE V + +A G + + M G LV VV+ ++
Sbjct: 10 PGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGII 69
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQGE 88
++ ++E G+L+DG+PR Q +
Sbjct: 70 KDR-IREADCKNGFLLDGFPRTVEQAD 95
>gnl|CDD|178279 PLN02674, PLN02674, adenylate kinase.
Length = 244
Score = 69.1 bits (169), Expect = 6e-15
Identities = 39/107 (36%), Positives = 62/107 (57%), Gaps = 4/107 (3%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PGSGKGTQ+ I +Y H++TGD+LR V + + G + M G LVS D+V+ ++
Sbjct: 40 PGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGII 99
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQGEQFEREDVVMELLGEKVLKEL 108
E +K+ KG+++DG+PR Q ++ D ++ G K+ K L
Sbjct: 100 DE-AMKKPSCQKGFILDGFPRTVVQAQKL---DEMLAKQGAKIDKVL 142
>gnl|CDD|240262 PTZ00088, PTZ00088, adenylate kinase 1; Provisional.
Length = 229
Score = 68.7 bits (168), Expect = 6e-15
Identities = 31/89 (34%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PG GKGT AE + +K HI+ G++LREE+ + + G ++ KV+ G LV ++V+ ++
Sbjct: 15 PGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIV 74
Query: 62 GEKVLKELPN-SKGYLIDGYPREKAQGEQ 89
+++ K + KG+++DG+PR Q ++
Sbjct: 75 KDEIAKVTDDCFKGFILDGFPRNLKQCKE 103
>gnl|CDD|179433 PRK02496, adk, adenylate kinase; Provisional.
Length = 184
Score = 67.5 bits (165), Expect = 8e-15
Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PG+GKGTQA + + HISTGD+LR+ + + G M G LV +V++L+
Sbjct: 10 PGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLV 69
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQGEQFE 91
E+ L++ + G+++DG+PR+ Q +
Sbjct: 70 QER-LQQPDAANGWILDGFPRKVTQAAFLD 98
>gnl|CDD|237746 PRK14529, PRK14529, adenylate kinase; Provisional.
Length = 223
Score = 61.3 bits (149), Expect = 3e-12
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 11/109 (10%)
Query: 1 GP-GSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVME 59
GP GSGKGTQ + +KY HI +G + RE + G+ G + + G LV D+ +
Sbjct: 7 GPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIP 66
Query: 60 LLGEKVLKELPNSKGYLIDGYPREKAQGEQFE--------REDVVMELL 100
++ E + ++ N G+L+DG+PR K Q E+ + D V+E+L
Sbjct: 67 MILETLKQDGKN--GWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEIL 113
>gnl|CDD|237747 PRK14530, PRK14530, adenylate kinase; Provisional.
Length = 215
Score = 59.0 bits (143), Expect = 2e-11
Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 20/100 (20%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKV----------MKDGGL 51
PG+GKGTQ+ + +++G H++TGD LR + + D+S + M G L
Sbjct: 12 PGAGKGTQSSNLAEEFGVEHVTTGDALR------ANKQMDISDMDTEYDTPGEYMDAGEL 65
Query: 52 VSTDVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQFE 91
V VV E++ E L ++ G+++DGYPR Q E E
Sbjct: 66 VPDAVVNEIVEEA----LSDADGFVLDGYPRNLEQAEYLE 101
>gnl|CDD|238978 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the
reversible phosphorylation of cytidine monophosphate
(CMP) to produce cytidine diphosphate (CDP), using ATP
as the preferred phosphoryl donor.
Length = 147
Score = 43.2 bits (103), Expect = 5e-06
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 1 GP-GSGKGTQAEKIVQKYGYTHISTGDLLREEVNS 34
GP GSGK T A+ + +K G ++ TG + EEV
Sbjct: 6 GPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVGK 40
>gnl|CDD|235244 PRK04182, PRK04182, cytidylate kinase; Provisional.
Length = 180
Score = 41.3 bits (98), Expect = 3e-05
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLRE 30
PGSGK T A + +K G H+S G++ RE
Sbjct: 9 PGSGKTTVARLLAEKLGLKHVSAGEIFRE 37
>gnl|CDD|221983 pfam13207, AAA_17, AAA domain.
Length = 114
Score = 40.4 bits (94), Expect = 4e-05
Identities = 19/44 (43%), Positives = 23/44 (52%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKV 45
PGSGK T A+K+ +K G IS DLLREE + G
Sbjct: 8 PGSGKSTLAKKLAEKLGIPVISLDDLLREEGLAELDDGELDDID 51
>gnl|CDD|233761 TIGR02173, cyt_kin_arch, cytidylate kinase, putative. Proteins
in this family are believed to be cytidylate kinase.
Members of this family are found in the archaea and in
spirochaetes, and differ considerably from the common
bacterial form of cytidylate kinase described by
TIGR00017.
Length = 171
Score = 40.1 bits (94), Expect = 9e-05
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLRE 30
PGSGK T A+ + +K IS GD+ RE
Sbjct: 9 PGSGKTTVAKILAEKLSLKLISAGDIFRE 37
>gnl|CDD|224027 COG1102, Cmk, Cytidylate kinase [Nucleotide transport and
metabolism].
Length = 179
Score = 38.8 bits (91), Expect = 3e-04
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLRE 30
PGSGK T A ++ + G +S G + RE
Sbjct: 9 PGSGKTTVARELAEHLGLKLVSAGTIFRE 37
>gnl|CDD|223360 COG0283, Cmk, Cytidylate kinase [Nucleotide transport and
metabolism].
Length = 222
Score = 36.8 bits (86), Expect = 0.002
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 1 GP-GSGKGTQAEKIVQKYGYTHISTGDLLR 29
GP GSGK T A+ + +K G+ ++ TG + R
Sbjct: 11 GPAGSGKSTVAKILAEKLGFHYLDTGAMYR 40
>gnl|CDD|234914 PRK01184, PRK01184, hypothetical protein; Provisional.
Length = 184
Score = 34.9 bits (81), Expect = 0.006
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEV 32
PGSGKG + KI ++ G + GD++REEV
Sbjct: 10 PGSGKG-EFSKIAREMGIPVVVMGDVIREEV 39
>gnl|CDD|234579 PRK00023, cmk, cytidylate kinase; Provisional.
Length = 225
Score = 35.1 bits (82), Expect = 0.007
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 1 GP-GSGKGTQAEKIVQKYGYTHISTG 25
GP GSGKGT A+ + +K G+ ++ TG
Sbjct: 11 GPAGSGKGTVAKILAKKLGFHYLDTG 36
>gnl|CDD|222307 pfam13671, AAA_33, AAA domain. This family of domains contain
only a P-loop motif, that is characteristic of the AAA
superfamily. Many of the proteins in this family are
just short fragments so there is no Walker B motif.
Length = 143
Score = 32.7 bits (75), Expect = 0.031
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVN 33
PGSGK T A +++++ G +S+ D LR+ +
Sbjct: 8 PGSGKSTFARRLLRELGAVVLSS-DTLRKRLR 38
>gnl|CDD|223315 COG0237, CoaE, Dephospho-CoA kinase [Coenzyme metabolism].
Length = 201
Score = 31.5 bits (72), Expect = 0.12
Identities = 32/121 (26%), Positives = 45/121 (37%), Gaps = 30/121 (24%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGS--------ARGADLSKVMKDGGLV 52
G GSGK T A KI+ + G+ I D+ RE V G G ++ + +DGGL
Sbjct: 10 GIGSGKSTVA-KILAELGFPVIDADDVAREVVEPGGEALQEIAERFGLEI--LDEDGGLD 66
Query: 53 STDVVMELLGEKV------LKELPNSKGYLIDGYPREK-AQGEQFEREDVV---MELLGE 102
L EKV +L ++ R + R V + LL E
Sbjct: 67 R-----RKLREKVFNDPEARLKLEK----ILHPLIRAEIKVVIDGARSPYVVLEIPLLFE 117
Query: 103 K 103
Sbjct: 118 A 118
>gnl|CDD|129128 TIGR00017, cmk, cytidylate kinase. This family consists of
cytidylate kinase, which catalyzes the phosphorylation
of cytidine 5-monophosphate (dCMP) to cytidine 5
-diphosphate (dCDP) in the presence of ATP or GTP. UMP
and dCMP can also act as acceptors [Purines,
pyrimidines, nucleosides, and nucleotides, Nucleotide
and nucleoside interconversions].
Length = 217
Score = 31.2 bits (71), Expect = 0.13
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 1 GP-GSGKGTQAEKIVQKYGYTHISTGDLLR 29
GP G+GK T A+ + +K GY ++ +G + R
Sbjct: 9 GPSGAGKSTVAKAVAEKLGYAYLDSGAMYR 38
>gnl|CDD|238835 cd01672, TMPK, Thymidine monophosphate kinase (TMPK), also known
as thymidylate kinase, catalyzes the phosphorylation of
thymidine monophosphate (TMP) to thymidine diphosphate
(TDP) utilizing ATP as its preferred phophoryl donor.
TMPK represents the rate-limiting step in either de
novo or salvage biosynthesis of thymidine triphosphate
(TTP).
Length = 200
Score = 29.2 bits (66), Expect = 0.69
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 9/64 (14%)
Query: 1 GPGSGKGTQAEKIVQ---KYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVV 57
G+GK T E + + GY + T + G+ G + +++ D D
Sbjct: 8 IDGAGKTTLIELLAERLEARGYEVVLTREP------GGTPIGEAIRELLLDPEDEKMDPR 61
Query: 58 MELL 61
ELL
Sbjct: 62 AELL 65
>gnl|CDD|237003 PRK11860, PRK11860, bifunctional 3-phosphoshikimate
1-carboxyvinyltransferase/cytidine monophosphate kinase;
Provisional.
Length = 661
Score = 29.2 bits (66), Expect = 0.80
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 1 GP-GSGKGTQAEKIVQKYGYTHISTGDLLR 29
GP SGKGT A ++ + GY ++ +G L R
Sbjct: 449 GPTASGKGTVAARVAEALGYHYLDSGALYR 478
>gnl|CDD|224847 COG1936, COG1936, Predicted nucleotide kinase (related to CMP and
AMP kinases) [Nucleotide transport and metabolism].
Length = 180
Score = 28.4 bits (64), Expect = 1.1
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREE 31
PG GK T + + ++ GY I +L +E
Sbjct: 9 PGVGKTTVCKLL-RELGYKVIELNELAKEN 37
>gnl|CDD|219014 pfam06414, Zeta_toxin, Zeta toxin. This family consists of
several bacterial zeta toxin proteins. Zeta toxin is
thought to be part of a postregulational killing system
in bacteria. It relies on antitoxin/toxin systems that
secure stable inheritance of low and medium copy number
plasmids during cell division and kill cells that have
lost the plasmid.
Length = 191
Score = 28.0 bits (63), Expect = 1.7
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 1 GPGSGKGTQAEKIVQKYGYT---HISTGDLLREE 31
PG+GK A ++++ G I D LR
Sbjct: 20 QPGAGKTELARALLEELGGGNVVRID-PDELRTY 52
>gnl|CDD|236546 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der;
Reviewed.
Length = 712
Score = 28.2 bits (63), Expect = 1.8
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 1 GP-GSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVME 59
GP G GK + + + Q GY ++ TG + R +G DL + D +V+ V
Sbjct: 8 GPAGVGKSSVSRALAQYLGYAYLDTGAMYRACAWWCLKQGIDLDAELVDEQVVTEAVGEF 67
Query: 60 LLGEKV-LKELPNSKGYLIDG 79
G + P+S G DG
Sbjct: 68 FTGLHFDISVDPDSPGVFADG 88
>gnl|CDD|238977 cd02019, NK, Nucleoside/nucleotide kinase (NK) is a protein
superfamily consisting of multiple families of enzymes
that share structural similarity and are functionally
related to the catalysis of the reversible phosphate
group transfer from nucleoside triphosphates to
nucleosides/nucleotides, nucleoside monophosphates, or
sugars. Members of this family play a wide variety of
essential roles in nucleotide metabolism, the
biosynthesis of coenzymes and aromatic compounds, as
well as the metabolism of sugar and sulfate.
Length = 69
Score = 26.1 bits (58), Expect = 2.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHI 22
G GSGK T A+K+ ++ G +
Sbjct: 7 GSGSGKSTVAKKLAEQLGGRSV 28
>gnl|CDD|178043 PLN02423, PLN02423, phosphomannomutase.
Length = 245
Score = 27.0 bits (60), Expect = 3.5
Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 23/67 (34%)
Query: 28 LREEVNSGSARGADLSKV-----------------------MKDGGLVSTDVVMELLGEK 64
LR+ V G G+DLSK+ KDG L+ T + LGE
Sbjct: 36 LRKVVTVGVVGGSDLSKISEQLGKTVINDYDYVFSENGLVAHKDGKLIGTQSLKSFLGED 95
Query: 65 VLKELPN 71
LKE N
Sbjct: 96 KLKEFIN 102
>gnl|CDD|236103 PRK07810, PRK07810, O-succinylhomoserine sulfhydrylase;
Provisional.
Length = 403
Score = 26.6 bits (59), Expect = 5.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 127 EQFEREINSPTGIVYFEVPDDVMTIL 152
Q+E ++ PT V+FE P + M L
Sbjct: 146 SQWEEALSVPTQAVFFETPSNPMQSL 171
>gnl|CDD|205476 pfam13296, T6SS_Vgr, Putative type VI secretion system Rhs
element Vgr. This is a family of putative type VI
secretion system Rhs element Vgr proteins from
Proteobacteria.
Length = 109
Score = 25.9 bits (58), Expect = 5.7
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 73 KGYLIDGYPREKAQGEQFEREDVVMEL 99
KG L+ R A G+Q + + V +L
Sbjct: 69 KGLLLSTDARPGASGQQLDMGEAVAQL 95
>gnl|CDD|182023 PRK09665, PRK09665, PTS system galactitol-specific transporter
subunit IIA; Provisional.
Length = 150
Score = 26.3 bits (58), Expect = 5.9
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 10/53 (18%)
Query: 87 GEQFEREDVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQFEREINSPTGI 139
G F + +G ++L +KG + D YP+ RE PTGI
Sbjct: 9 GISFVDRSEALTHIGNEML-----AKGVVHDTYPQA-----LIAREAEFPTGI 51
>gnl|CDD|177812 PLN02151, PLN02151, trehalose-phosphatase.
Length = 354
Score = 26.6 bits (58), Expect = 6.0
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 64 KVLKELPNSKGYLIDGYPREKAQGEQFEREDVVMELL 100
K+L++ G L+ Y +E + D VME L
Sbjct: 305 KILRDKKQGLGILVSKYAKETNASYSLQEPDEVMEFL 341
>gnl|CDD|129256 TIGR00152, TIGR00152, dephospho-CoA kinase. This model produces
scores in the range of 0-25 bits against adenylate,
guanylate, uridine, and thymidylate kinases
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Pantothenate and coenzyme A].
Length = 188
Score = 26.2 bits (58), Expect = 6.9
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSA 37
G GSGK T A + KY + I + + V GS
Sbjct: 7 GIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSP 43
>gnl|CDD|238979 cd02021, GntK, Gluconate kinase (GntK) catalyzes the phosphoryl
transfer from ATP to gluconate. The resulting product
gluconate-6-phoshate is an important precursor of
gluconate metabolism. GntK acts as a dimmer composed of
two identical subunits.
Length = 150
Score = 26.1 bits (58), Expect = 7.3
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVN 33
GSGK T + + ++ G I GD L N
Sbjct: 8 SGSGKSTVGKALAERLGAPFID-GDDLHPPAN 38
>gnl|CDD|176386 cd01791, Ubl5, UBL5 ubiquitin-like modifier. UBL5 (also known as
HUB1) is a ubiquitin-like modifier that is both widely
expressed and highly phylogenetically conserved. At
the C-terminal end of the ubiquitin-like fold of UBL5
is a di-tyrosine motif followed by a single variable
residue instead of the characteristic di-glycine found
in all other ubiquitin-like modifiers. ULB5 interacts
with a cyclin-like kinase called CLK4 but not with
other cyclin-like kinase family members.
Length = 73
Score = 25.1 bits (55), Expect = 7.5
Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 4/24 (16%)
Query: 7 GTQAEKIVQKYGYT----HISTGD 26
GT+ EKIV K YT HIS GD
Sbjct: 36 GTRPEKIVLKKWYTIFKDHISLGD 59
>gnl|CDD|219839 pfam08433, KTI12, Chromatin associated protein KTI12. This is a
family of chromatin associated proteins which interact
with the Elongator complex, a component of the
elongating form of RNA polymerase II. The Elongator
complex has histone acetyltransferase activity.
Length = 266
Score = 26.1 bits (58), Expect = 7.7
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 13/67 (19%)
Query: 2 PGSGKGTQAEKIVQ-----KYGYTHISTGDLL--REEVNS----GSARGADLSKVMKDGG 50
P SGK T+A+++ + Y IS L ++ RG+ S V +D
Sbjct: 8 PSSGKSTRAKELAKYLEEKGYDVIVISDESLGIESDDYKDSKKEKFLRGSLRSAVKRD-- 65
Query: 51 LVSTDVV 57
L +V
Sbjct: 66 LSKNTIV 72
>gnl|CDD|198367 cd07795, FGGY_ScGut1p_like, Saccharomyces cerevisiae Gut1p and
related proteins; belongs to the FGGY family of
carbohydrate kinases. This subgroup corresponds to a
small group of fungal glycerol kinases (GK), including
Saccharomyces cerevisiae Gut1p/YHL032Cp, which
phosphorylates glycerol to glycerol-3-phosphate in the
cytosol. Glycerol utilization has been considered as the
sole source of carbon and energy in S. cerevisiae, and
is mediated by glycerol kinase and glycerol 3-phosphate
dehydrogenase, which is encoded by the GUT2 gene.
Members in this family show high similarity to their
prokaryotic and eukaryotic homologs. GKs belong to the
FGGY family of carbohydrate kinases, the monomers of
which contain two large domains, which are separated by
a deep cleft that forms the active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain.
Length = 496
Score = 26.3 bits (58), Expect = 7.8
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 39 GADLSKVMKDGGLVSTDVVMELL 61
G+ L + DGG+ ++DV M++
Sbjct: 407 GSPLKALAVDGGMSNSDVAMQIQ 429
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 25.8 bits (57), Expect = 8.9
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 37 ARGADLSKVMKDGGLVSTDVVMEL 60
AR AD VM G +V V L
Sbjct: 205 ARLADDVAVMSHGRIVEQGDVETL 228
>gnl|CDD|222856 PHA02530, pseT, polynucleotide kinase; Provisional.
Length = 300
Score = 25.8 bits (57), Expect = 9.6
Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 6/64 (9%)
Query: 2 PGSGKGTQAEKIVQK-YGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVST---DVV 57
PGSGK T A + K +++ DL + G +K + LV+
Sbjct: 11 PGSGKSTWAREFAAKNPKAVNVNRDDLRQSLFGHGEWGEYKFTK--EKEDLVTKAQEAAA 68
Query: 58 MELL 61
+ L
Sbjct: 69 LAAL 72
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.310 0.135 0.373
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,014,736
Number of extensions: 748776
Number of successful extensions: 653
Number of sequences better than 10.0: 1
Number of HSP's gapped: 629
Number of HSP's successfully gapped: 83
Length of query: 153
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 64
Effective length of database: 6,990,096
Effective search space: 447366144
Effective search space used: 447366144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.0 bits)