RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11030
(153 letters)
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET:
AMP; 2.3A {Homo sapiens}
Length = 199
Score = 139 bits (352), Expect = 1e-42
Identities = 53/103 (51%), Positives = 75/103 (72%), Gaps = 4/103 (3%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMEL 60
GPGSGKGTQ EK+V+KYG+TH+STG+LLREE+ S S R + +M+ G LV + +V+EL
Sbjct: 20 GPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLEL 79
Query: 61 LGEKVLKELPNSKGYLIDGYPREKAQGEQFERE----DVVMEL 99
L E ++ L +++G+LIDGYPRE QGE+F R +V+ +
Sbjct: 80 LKEAMVASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICM 122
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase,
transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens}
PDB: 1z83_A* 3adk_A
Length = 196
Score = 139 bits (352), Expect = 1e-42
Identities = 60/103 (58%), Positives = 80/103 (77%), Gaps = 4/103 (3%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMEL 60
GPGSGKGTQ EKIVQKYGYTH+STGDLLR EV+SGSARG LS++M+ G LV + V+++
Sbjct: 17 GPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDM 76
Query: 61 LGEKVLKELPNSKGYLIDGYPREKAQGEQFERE----DVVMEL 99
L + ++ ++ SKG+LIDGYPRE QGE+FER +++ +
Sbjct: 77 LRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYV 119
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate
kinase); nucleoside monophosphate kinase, NMP kinase;
HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP:
c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Length = 194
Score = 132 bits (334), Expect = 5e-40
Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 38/150 (25%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMEL 60
GPGSGKGTQ IV+ +G+ H+S GDLLR+E SGS G ++ ++K+G +V + V ++L
Sbjct: 14 GPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKL 73
Query: 61 LGEKVLKELPNSKGYLIDGYPREKAQGEQFEREDVVMELLGEKVLKELPNSKGYLIDGYP 120
L + K +L+DG+PR + +E E + + V
Sbjct: 74 LKNAIDA--NQGKNFLVDGFPRNEENNNSWE------ENMKDFV---------------- 109
Query: 121 REKAQGEQFEREINSPTGIVYFEVPDDVMT 150
+++F+ P++VMT
Sbjct: 110 --------------DTKFVLFFDCPEEVMT 125
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces
cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Length = 203
Score = 130 bits (328), Expect = 4e-39
Identities = 45/151 (29%), Positives = 70/151 (46%), Gaps = 39/151 (25%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEV-NSGSARGADLSKVMKDGGLVSTDVVME 59
GPG+GKGTQ EK+V+ Y + H+S GDLLR E +GS G + +K+G +V ++ +
Sbjct: 23 GPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLA 82
Query: 60 LLGEKVLKELPNSKGYLIDGYPREKAQGEQFEREDVVMELLGEKVLKELPNSKGYLIDGY 119
LL + + +K +LIDG+
Sbjct: 83 LLRNAISDNVKANK--------------------------------------HKFLIDGF 104
Query: 120 PREKAQGEQFEREINSPTGIVYFEVPDDVMT 150
PR+ Q FER+I I++F+ P+D+M
Sbjct: 105 PRKMDQAISFERDIVESKFILFFDCPEDIML 135
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region,
conformational changes, transferase; 2.10A {Homo
sapiens} SCOP: c.37.1.1
Length = 196
Score = 126 bits (320), Expect = 7e-38
Identities = 38/154 (24%), Positives = 72/154 (46%), Gaps = 40/154 (25%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEV-NSGSARGADLSKVMKDGGLVSTDVVME 59
GPG+GKGTQ +IV+KYGYTH+S G+LLR+E N S G + K +K+G +V ++ +
Sbjct: 11 GPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITIS 70
Query: 60 LLGEKVLKELPNSKGYLIDGYPREKAQGEQFEREDVVMELLGEKVLKELPNSKGYLIDGY 119
LL ++ ++ + +LIDG+
Sbjct: 71 LLKREM------------------------------------DQTMAANAQKNKFLIDGF 94
Query: 120 PREKAQGEQFEREINS---PTGIVYFEVPDDVMT 150
PR + + + + ++ + +++F+ +++
Sbjct: 95 PRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICI 128
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET:
AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Length = 222
Score = 114 bits (288), Expect = 9e-33
Identities = 40/102 (39%), Positives = 56/102 (54%), Gaps = 4/102 (3%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
P SGKGTQ E I KY HIS GDLLR E+ +GS G + M+ G LV ++V+ ++
Sbjct: 14 PASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMV 73
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQGEQFERE----DVVMEL 99
E++ + G+L+DGYPR +Q E D + L
Sbjct: 74 KERLRQPDAQENGWLLDGYPRSYSQAMALETLEIRPDTFILL 115
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding,
human, structura genomics, structural genomics
consortium, SGC, transferase; HET: GP5; 2.05A {Homo
sapiens} PDB: 2ar7_A* 3ndp_A
Length = 246
Score = 114 bits (287), Expect = 2e-32
Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 5/101 (4%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PGSGKGT ++I Q +G H+S+G LRE + + + G + ++ LV V+ L+
Sbjct: 36 PGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLM 95
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQGEQFERE---DVVMEL 99
++ + +L+DG+PR Q E ++ D+V+ L
Sbjct: 96 MSELEN--RRGQHWLLDGFPRTLGQAEALDKICEVDLVISL 134
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A
{Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A*
1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Length = 214
Score = 113 bits (284), Expect = 3e-32
Identities = 40/102 (39%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
P +GKGTQA+ I++KYG ISTGD+LR V SGS G +M G LV+ ++V+ L+
Sbjct: 9 PVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALV 68
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQGEQFERE----DVVMEL 99
E+ + + G+L+DG+PR Q + + D V+E
Sbjct: 69 KER-IAQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEF 109
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide
biosynthesis, nucleotide-BIND transferase, structural
genomics; 2.10A {Burkholderia pseudomallei 1710B}
Length = 230
Score = 112 bits (283), Expect = 5e-32
Identities = 42/102 (41%), Positives = 61/102 (59%), Gaps = 5/102 (4%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PG+GKGTQA I +K+G ISTGD+LR V +G+ G + M +G LV +++ L+
Sbjct: 17 PGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLV 76
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQGEQFERE----DVVMEL 99
E+ LKE + GYL DG+PR AQ + + D V+E+
Sbjct: 77 KER-LKEADCANGYLFDGFPRTIAQADAMKEAGVAIDYVLEI 117
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase,
transferase (phosphotransferase); HET: AP5; 1.63A
{Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB:
2aky_A* 3aky_A* 1dvr_A*
Length = 220
Score = 112 bits (282), Expect = 6e-32
Identities = 33/106 (31%), Positives = 63/106 (59%), Gaps = 8/106 (7%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PG+GKGTQA + +++ H++TGD+LR ++ G+ G + K+M GGLVS D+++ ++
Sbjct: 13 PGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMI 72
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQGEQFERE--------DVVMEL 99
+++ G+++DG+PR Q E+ ++ + +EL
Sbjct: 73 KDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIEL 118
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP
phosphotransferase, myokinase, structural genomics,
structural genomics consortium, SGC; 1.48A {Homo
sapiens} PDB: 2ak3_A*
Length = 227
Score = 111 bits (281), Expect = 1e-31
Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PGSGKGT + +I + H+S+GDLLR+ + G+ G + G L+ DV+ L
Sbjct: 16 PGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLA 75
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQGEQFERE---DVVMEL 99
+ LK +L+DG+PR Q E +R D V+ L
Sbjct: 76 LHE-LKN-LTQYSWLLDGFPRTLPQAEALDRAYQIDTVINL 114
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein
inhibitors, nucleotide-binding, transferase; HET: AP5;
1.60A {Cryptosporidium parvum iowa II}
Length = 217
Score = 110 bits (278), Expect = 3e-31
Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 9/106 (8%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PGSGKGTQ E I ++YG H+STGD+LRE + +G+ G + +++ G V ++V+ L+
Sbjct: 14 PGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLV 73
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQGEQFERE--------DVVMEL 99
EK G+++DG+PR Q E + V+
Sbjct: 74 KEK-FDLGVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYF 118
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics
consortium, SGC, RO fold, transferase, ATP binding,
phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium
falciparum}
Length = 243
Score = 110 bits (277), Expect = 6e-31
Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 9/106 (8%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PGSGKGTQ+ + + + Y H+STGDLLRE + G + ++ +G LV +V+ L+
Sbjct: 38 PGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLV 97
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQGEQFERE--------DVVMEL 99
EK LK KG+++DGYPR Q E + D V
Sbjct: 98 DEK-LKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYF 142
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding,
nucleotide-binding, transferase; HET: AP5; 2.00A
{Marinibacillus marinus}
Length = 216
Score = 109 bits (275), Expect = 7e-31
Identities = 39/106 (36%), Positives = 60/106 (56%), Gaps = 9/106 (8%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PG+GKGTQAE+I++KY HISTGD+ R + +G+ G M G LV +V + ++
Sbjct: 9 PGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIV 68
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQGEQFERE--------DVVMEL 99
E+ L + KG+L+DG+PR AQ + + D V+ +
Sbjct: 69 HER-LSKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNI 113
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase,
phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1
g.41.2.1 PDB: 2ak2_A 2c9y_A*
Length = 233
Score = 109 bits (275), Expect = 1e-30
Identities = 42/106 (39%), Positives = 60/106 (56%), Gaps = 9/106 (8%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PG+GKGTQA K+ + + H++TGD+LR V SGS G L M G LVS ++V+EL+
Sbjct: 25 PGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELI 84
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQGEQFERE--------DVVMEL 99
+ L+ P G+L+DG+PR Q E + D V+E
Sbjct: 85 EKN-LETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEF 129
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination,
ATP-binding, cytoplasm, metal-binding, nucleotide
biosynthesis, nucleotide-binding; HET: AP5; 1.58A
{Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A*
2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A*
1s3g_A*
Length = 216
Score = 108 bits (271), Expect = 2e-30
Identities = 39/106 (36%), Positives = 59/106 (55%), Gaps = 9/106 (8%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PG+GKGTQ E+IV+KYG HISTGD+ R + + G + + G LV +V + ++
Sbjct: 9 PGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIV 68
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQGEQFERE--------DVVMEL 99
E+ L + +G+L+DG+PR AQ E E D V+ +
Sbjct: 69 KER-LGKDDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINI 113
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase;
HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A*
3l0p_A*
Length = 223
Score = 107 bits (270), Expect = 4e-30
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
GSGKGTQ + KY HI +G + RE + G+ G + + G LV D+ + ++
Sbjct: 9 NGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMV 68
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQGEQFERE--------DVVMEL 99
E + E G+L+DG+PR Q ++ + V+E+
Sbjct: 69 LETL--ESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEI 112
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism,
ATP-binding, nucleotide biosynthesis,
nucleotide-binding, transferase; HET: ADP; 1.9A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Length = 201
Score = 106 bits (268), Expect = 5e-30
Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PG+GKGTQA K+ +K G ISTG+L R + G+ G + + + G LV +D+ EL+
Sbjct: 29 PGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELV 88
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQGEQFEREDVVMELLGEKV 104
++ L + G+++DGYPR Q + ++E G +
Sbjct: 89 DDR-LNNPDAANGFILDGYPRSVEQAKAL---HEMLERRGTDI 127
>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding,
nucleo binding, transferase; HET: AP5; 1.90A {Aquifex
aeolicus} PDB: 2rh5_A
Length = 206
Score = 106 bits (267), Expect = 7e-30
Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PG+GKGTQA+++ ++ G+ HISTGD+LRE V G+ G + M+ G LV D+++ L
Sbjct: 9 PGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIAL- 67
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQGEQFER 92
+ + P + DG+PR Q E +
Sbjct: 68 ---IEEVFPKHGNVIFDGFPRTVKQAEALDE 95
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide
biosynthesis, nucleotide-binding, transferase,
structural genomics; 1.80A {Thermus thermophilus}
Length = 186
Score = 101 bits (255), Expect = 3e-28
Identities = 35/91 (38%), Positives = 58/91 (63%), Gaps = 6/91 (6%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PG+GKGTQA ++ Q+ G+ +STGD+LR+ V G+ G + +M+ G LV D+++EL+
Sbjct: 13 PGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELI 72
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQGEQFER 92
E++ ++ + DG+PR AQ E +R
Sbjct: 73 REEL------AERVIFDGFPRTLAQAEALDR 97
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG,
structural genomics, midwest center for structural
genomics; HET: AMP; 2.30A {Sulfolobus solfataricus}
PDB: 3h0k_A
Length = 179
Score = 68.0 bits (166), Expect = 3e-15
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKD-GGLVSTDVVME 59
PGSGK A K++++ G I D++R+ + + G L K + VV
Sbjct: 9 MPGSGKSEFA-KLLKERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVAR 67
Query: 60 LLGEKVLKELPNSKGYLIDGYPREKAQGEQFERE 93
L E++ N + DG R A+ E+F+R
Sbjct: 68 LCVEELGTS--NHDLVVFDGV-RSLAEVEEFKRL 98
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 65.3 bits (159), Expect = 4e-14
Identities = 10/91 (10%), Positives = 29/91 (31%), Gaps = 8/91 (8%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
G GK T +++ + + GD++ V G + +++ + + +
Sbjct: 11 AGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELL--------ALTWKNI 62
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQGEQFER 92
+ + L ++D +
Sbjct: 63 TDLTVNFLLAQNDVVLDYIAFPDEAEALAQT 93
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta
proteins (A/B), protein binding, transferase,
phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB:
3iik_A 3iil_A* 3iim_A* 1rkb_A
Length = 180
Score = 43.9 bits (103), Expect = 3e-06
Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 11/90 (12%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PG GK T +++ K G +I+ GDL REE ++ E
Sbjct: 20 PGVGKTTLGKELASKSGLKYINVGDLAREE-----------QLYDGYDEEYDCPILDEDR 68
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQGEQFE 91
L G ++D + + F
Sbjct: 69 VVDELDNQMREGGVIVDYHGCDFFPERWFH 98
>1dek_A Deoxynucleoside monophosphate kinase; transferase,
phosphotransferase; HET: DGP; 2.00A {Enterobacteria
phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Length = 241
Score = 39.1 bits (90), Expect = 2e-04
Identities = 20/142 (14%), Positives = 45/142 (31%), Gaps = 11/142 (7%)
Query: 3 GSGKGTQAEKIVQKYGYTHISTGDLLREEVN------SGSARGADLSKVMKDGGLVSTDV 56
SGK T A+ I+ Y +++ + + + L++ +G +
Sbjct: 11 RSGKDTTADFIMSNYSAVKYQLAGPIKDALAYAWGVFAANTDYPCLTRKEFEGIDYDRET 70
Query: 57 VMELLGEKVLKELPNSKGYLIDGYPREKAQGEQFEREDVVMELLGEKVLKELPNSKGYLI 116
+ L +V+ + + YL P + E ++ V + + ++ N+
Sbjct: 71 NLNLTKLEVITIMEQAFCYLNGKSPIKGVFVFDDEGKESV-NFVAFNKITDVINNIEDQW 129
Query: 117 DGYPREKAQ--GEQFEREINSP 136
R Q G
Sbjct: 130 S--VRRLMQALGTDLIVNNFDR 149
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 38.9 bits (90), Expect = 2e-04
Identities = 16/90 (17%), Positives = 35/90 (38%), Gaps = 8/90 (8%)
Query: 2 PGSGKGTQAEKIVQK-YGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMEL 60
PG+GK + AE I + G+ H+ G L++E + + + +
Sbjct: 19 PGTGKTSMAEMIAAELDGFQHLEVGKLVKEN-------HFYTEYDTELDTHIIEEKDEDR 71
Query: 61 LGEKVLKELPNSKGYLIDGYPREKAQGEQF 90
L + + + + +++D + E F
Sbjct: 72 LLDFMEPIMVSRGNHVVDYHSSELFPERWF 101
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 36.7 bits (85), Expect = 0.001
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 2 PGSGKGTQAEKIVQKY-GYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMEL 60
PGSGK T A + + K G+ +I+ D R+ + + R K+G + T + +
Sbjct: 11 PGSGKSTWAREFIAKNPGFYNINR-DDYRQSIMAHEERDEYKYTKKKEG--IVTGMQFDT 67
Query: 61 LGEKVLKELPNSKGYLIDG 79
+ +L + KG +I
Sbjct: 68 A-KSILYGGDSVKGVIISD 85
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 35.8 bits (82), Expect = 0.003
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 2 PGSGKGTQAEKIVQKY-GYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMEL 60
PGSGK T A + + K G+ +I+ D R+ + + R K+G + T + +
Sbjct: 11 PGSGKSTWAREFIAKNPGFYNINR-DDYRQSIMAHEERDEYKYTKKKEG--IVTGMQFDT 67
Query: 61 LGEKVLKELPNSKGYLID 78
+ +L + KG +I
Sbjct: 68 A-KSILYGGDSVKGVIIS 84
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.013
Identities = 27/188 (14%), Positives = 62/188 (32%), Gaps = 58/188 (30%)
Query: 11 EKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVS-TDVVMELL---GEKVL 66
+ V + + D+ + ++ ++ ++ VS T + L E+++
Sbjct: 27 DAFVDNFDCKDVQ--DMPKSILSK-----EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79
Query: 67 KE-----LPNSKGYLIDGYPREKAQ------------------GEQF-----EREDVVME 98
++ L + +L+ E+ Q + F R ++
Sbjct: 80 QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139
Query: 99 LLGEKVLKELPNSKGYLIDGYPREKAQGEQ---------FEREINSPTGIVYFEV----- 144
L + L EL +K LIDG G+ ++ + I + +
Sbjct: 140 L--RQALLELRPAKNVLIDGV---LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 145 PDDVMTIL 152
P+ V+ +L
Sbjct: 195 PETVLEML 202
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 33.5 bits (76), Expect = 0.013
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 2 PGSGKGTQAEKIVQKYG--YTHISTGDLLREEVNSG 35
PGSGK T AE + G H D L + G
Sbjct: 18 PGSGKSTIAEALANLPGVPKVHFH-SDDLWGYIKHG 52
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for
structural genomics, JCSG; HET: MSE; 1.70A
{Chloroflexus aurantiacus}
Length = 193
Score = 33.4 bits (76), Expect = 0.016
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREE 31
P +GK T ++ + +S D +E
Sbjct: 14 PATGKTTLSQALATGLRLPLLSK-DAFKEV 42
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4;
2.30A {Staphylococcus aureus}
Length = 219
Score = 32.8 bits (76), Expect = 0.022
Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 1 GP-GSGKGTQAEKIVQKYGYTHISTG 25
GP +GK T A+++ + ++ TG
Sbjct: 10 GPAAAGKSTIAKRVASELSMIYVDTG 35
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation,
nucleotide metab transferase; HET: C5P; 1.50A {Thermus
thermophilus} PDB: 3akc_A* 3akd_A*
Length = 208
Score = 32.4 bits (75), Expect = 0.028
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 1 GP-GSGKGTQAEKIVQKYGYTHISTG 25
GP SGK + A ++ G ++S+G
Sbjct: 9 GPSASGKSSVARRVAAALGVPYLSSG 34
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 32.3 bits (73), Expect = 0.036
Identities = 13/95 (13%), Positives = 29/95 (30%), Gaps = 8/95 (8%)
Query: 2 PGSGKGTQAEKIV-----QKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDV 56
PG G T ++ + + Y +S G ++ E M+ +
Sbjct: 12 PGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEE--NLVSDRDQMRKMDPETQKR 69
Query: 57 VMELLGEKVLKELPNSKGYLIDGYPREKAQGEQFE 91
+ ++ G K+ E+ +D +
Sbjct: 70 IQKMAGRKI-AEMAKESPVAVDTHSTVSTPKGYLP 103
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide
monophosphate kinase,, transferase; 1.75A {Escherichia
coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A*
1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Length = 227
Score = 32.0 bits (74), Expect = 0.041
Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 1 GP-GSGKGTQAEKIVQKYGYTHISTG 25
GP G+GKGT + + + + + +G
Sbjct: 12 GPSGAGKGTLCKAMAEALQWHLLDSG 37
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase,
transferase; NMR {Streptococcus pneumoniae} SCOP:
c.37.1.1
Length = 236
Score = 32.0 bits (74), Expect = 0.045
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 1 GP-GSGKGTQAEKIVQKYGYTHISTG 25
GP SGK T A+ I + +G+T++ TG
Sbjct: 23 GPASSGKSTVAKIIAKDFGFTYLDTG 48
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 31.6 bits (72), Expect = 0.056
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVN 33
K T A K+ ++ Y I G +
Sbjct: 10 DCCFKSTVAAKLSKELKYPIIK-GSSFELAKS 40
>3r20_A Cytidylate kinase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, ADP,
DCMP, D transferase; 2.00A {Mycobacterium smegmatis}
PDB: 3r8c_A 4die_A*
Length = 233
Score = 31.3 bits (72), Expect = 0.074
Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 1 GP-GSGKGTQAEKIVQKYGYTHISTG 25
GP G+GK + + + + G ++ TG
Sbjct: 16 GPAGTGKSSVSRGLARALGARYLDTG 41
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.085
Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 21/100 (21%)
Query: 72 SKGYLIDGYPREKAQGEQFEREDV-VMELLGE---KVLKELPNS--------KGYLI--- 116
+G +D Y KA + + R D + G ++ P + KG I
Sbjct: 1628 EQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN 1687
Query: 117 ------DGYPREKAQGEQFEREINSPTGIVYFEVPDDVMT 150
+ K + E+ +EIN + F +++
Sbjct: 1688 YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS 1727
Score = 28.9 bits (64), Expect = 0.92
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 5/41 (12%)
Query: 1 GPG--SGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARG 39
GPG SG G + G I G L ++N G
Sbjct: 505 GPGGASGLGVLTHRNKDGTGVRVIVAGTL---DINPDDDYG 542
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme
function initiative, EFI, STRU genomics, transferase;
1.60A {Janibacter SP}
Length = 200
Score = 30.0 bits (67), Expect = 0.19
Identities = 12/49 (24%), Positives = 17/49 (34%)
Query: 3 GSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGL 51
GSGK T A + + G E + RG L+ + L
Sbjct: 39 GSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRGIPLTDEDRWPWL 87
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure
initiative, midwest CENT structural genomics, MCSG;
2.79A {Clostridium symbiosum atcc 14940}
Length = 223
Score = 29.7 bits (66), Expect = 0.30
Identities = 7/35 (20%), Positives = 11/35 (31%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSG 35
GSG +K+ ++ G L S
Sbjct: 22 EYGSGGRIVGKKLAEELGIHFYDDDILKLASEKSA 56
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein
structure initiati YORK structural genomics research
consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 29.7 bits (66), Expect = 0.32
Identities = 14/52 (26%), Positives = 20/52 (38%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVS 53
GSGK + E I + GY I L E + G L+ + L +
Sbjct: 27 SGSGKSSVGEAIAEACGYPFIEGDALHPPENIRKMSEGIPLTDDDRWPWLAA 78
>2gkp_A Hypothetical protein NMB0488; structural genomics, APC83854, PSI,
PR structure initiative; HET: MSE; 1.35A {Neisseria
meningitidis} SCOP: d.351.1.1
Length = 167
Score = 28.9 bits (64), Expect = 0.46
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 6/64 (9%)
Query: 51 LVSTDVVMELLGEKVLKELPNSK------GYLIDGYPREKAQGEQFEREDVVMELLGEKV 104
++ D E LG VL+ L NS+ D + EK + + + LG K
Sbjct: 44 ILPLDTDNETLGTTVLQALANSRTFVYDSPEDQDFFDTEKIRQRYEDWVAKLCGNLGYKT 103
Query: 105 LKEL 108
+ L
Sbjct: 104 RRAL 107
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the
strand order 23145, walker A motif, cholesterol
biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Length = 202
Score = 28.8 bits (64), Expect = 0.53
Identities = 8/50 (16%), Positives = 17/50 (34%), Gaps = 5/50 (10%)
Query: 3 GSGKGTQAEKIVQKYGYTH---ISTGDLLREEVNSGSARGADLSKVMKDG 49
SGK E + + G + L+E+ G + +++
Sbjct: 21 KSGKDFVTEALQSRLGADVCAVLRLSGPLKEQY--AQEHGLNFQRLLDTS 68
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 27.8 bits (61), Expect = 1.2
Identities = 17/86 (19%), Positives = 26/86 (30%), Gaps = 9/86 (10%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PG GK T K+ + I+ + +N G + G M L
Sbjct: 10 PGVGKSTVLAKVKEILDNQGINN-----KIINYGDF----MLATALKLGYAKDRDEMRKL 60
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQG 87
+ K+L I R +G
Sbjct: 61 SVEKQKKLQIDAAKGIAEEARAGGEG 86
>3k9a_A HIV glycoprotein GP41; membrane proximal external region, MPER,
viral PR; 2.10A {Human immunodeficiency virus 1}
Length = 108
Score = 27.0 bits (60), Expect = 1.5
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 126 GEQFEREINSPTGIVY 141
G ++EREI++ T I+Y
Sbjct: 47 GSEWEREISNYTDIIY 62
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP
phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium
tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A*
1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A*
1w2h_A*
Length = 214
Score = 26.9 bits (60), Expect = 2.3
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 10/64 (15%)
Query: 3 GSGKGTQAEKIV---QKYGYTHISTGDLLREEVNSGSARGADLSKVMKDG--GLVSTDVV 57
G+GK T EK+ + G + + G + AD++ G G +++ V
Sbjct: 10 GAGKRTLVEKLSGAFRAAGRSVATL-----AFPRYGQSVAADIAAEALHGEHGDLASSVY 64
Query: 58 MELL 61
Sbjct: 65 AMAT 68
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains;
HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A*
3ipp_A
Length = 423
Score = 26.2 bits (58), Expect = 4.6
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 7/64 (10%)
Query: 15 QKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELPNSKG 74
QK G THIS ++ + + L K+ LV + +L K + P
Sbjct: 96 QKAGLTHISI-------LSDALSEPSRLQKLPHFEQLVYPQWLHDLQQGKEVTAKPAGDW 148
Query: 75 YLID 78
+I+
Sbjct: 149 KVIE 152
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding,
ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE
PG4; 1.60A {Sulfolobus tokodaii}
Length = 213
Score = 25.7 bits (57), Expect = 6.0
Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 11/61 (18%)
Query: 3 GSGKGTQAEKIVQ--KYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMEL 60
GSGK +QA + + T NS + + K L +
Sbjct: 14 GSGKSSQATLLKDWIELKRDVYLT----EW--NSSDWIHDIIKEAKKKDLL---TPLTFS 64
Query: 61 L 61
L
Sbjct: 65 L 65
>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural
genomics, protein structure initiative; 1.65A
{Pseudomonas syringae PV}
Length = 253
Score = 25.7 bits (57), Expect = 6.6
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 35 GSARGADLSKVMKDGGLVSTDVVMELLGEKVLKELP 70
GS GA + V K V++D + ++ P
Sbjct: 47 GSLMGAKIYIVAKSLDPVTSDAGLAIVPTATFGTCP 82
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis,
phosphoprotein, feedback inhibition,
deoxyribonucleoside kinase, salvage pathway; HET: DCP;
2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB:
1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A*
2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Length = 230
Score = 25.8 bits (56), Expect = 6.9
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 3 GSGKGTQAEKIVQKYGYTHI 22
GSGK T + +
Sbjct: 30 GSGKTTYLNHFEKYKNDICL 49
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 25.8 bits (56), Expect = 7.1
Identities = 14/71 (19%), Positives = 21/71 (29%), Gaps = 3/71 (4%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PGSGK T AE++ Q + + L E N V L +
Sbjct: 33 PGSGKSTIAEELCQIINEKYHTF---LSEHPNVIEVNDRLKPMVNLVDSLKTLQPNKVAE 89
Query: 62 GEKVLKELPNS 72
+ +
Sbjct: 90 MIENQGLFKDH 100
>3lib_A Hypothetical sensory transduction histidine kinas; PDC fold,
signaling protein; 2.99A {Methanosarcina mazei}
Length = 290
Score = 25.4 bits (55), Expect = 8.1
Identities = 24/117 (20%), Positives = 39/117 (33%), Gaps = 11/117 (9%)
Query: 45 VMKDG---GLVSTDVVMELLGEKVLKELPNSKGY--LIDG------YPREKAQGEQFERE 93
+MK+G G+ DV +E + E V K GY ++ +P K + +
Sbjct: 156 IMKEGEFAGIGGVDVSLEYVDEVVSKVRTFDTGYAFMVSNSGVILSHPTHKDWIGKKDLY 215
Query: 94 DVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQFEREINSPTGIVYFEVPDDVMT 150
D E L + G+L P F + + VP + M
Sbjct: 216 DFGGEELEKASRDIKNGIGGHLETADPTTGKTVILFYEPVETGDFAFVLVVPKEEML 272
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide
biosynthesis, TMP-binding, A binding, structural
genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Length = 195
Score = 25.2 bits (56), Expect = 8.9
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 7/31 (22%)
Query: 3 GSGKGTQAEKIV---QKYGYTHISTGDLLRE 30
GSGK TQA+K+ ++ GY RE
Sbjct: 10 GSGKTTQAKKLYEYLKQKGYFVSLY----RE 36
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase;
HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A*
2jas_A*
Length = 205
Score = 25.3 bits (55), Expect = 8.9
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 3 GSGKGTQAEKIVQKYGYTHI 22
G+GK T + +I +K GY
Sbjct: 10 GAGKSTISAEISKKLGYEIF 29
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.135 0.373
Gapped
Lambda K H
0.267 0.0529 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,414,808
Number of extensions: 144430
Number of successful extensions: 398
Number of sequences better than 10.0: 1
Number of HSP's gapped: 375
Number of HSP's successfully gapped: 91
Length of query: 153
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 68
Effective length of database: 4,328,508
Effective search space: 294338544
Effective search space used: 294338544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 53 (24.7 bits)