RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11030
(153 letters)
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 75.0 bits (183), Expect = 3e-18
Identities = 40/92 (43%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMEL 60
PG+GKGTQAEKIV YG HISTGD+ R + G+ G + M G LV +V + +
Sbjct: 8 LPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGI 67
Query: 61 LGEKVLKELPNSKGYLIDGYPREKAQGEQFER 92
+ E++ K+ G+L+DG+PR AQ E E
Sbjct: 68 VRERLSKD-DCQNGFLLDGFPRTVAQAEALET 98
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 73.8 bits (180), Expect = 1e-17
Identities = 38/95 (40%), Positives = 55/95 (57%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMEL 60
P SGKGTQ E I KY HIS GDLLR E+ +GS G + M+ G LV ++V+ +
Sbjct: 11 APASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNM 70
Query: 61 LGEKVLKELPNSKGYLIDGYPREKAQGEQFEREDV 95
+ E++ + G+L+DGYPR +Q E ++
Sbjct: 71 VKERLRQPDAQENGWLLDGYPRSYSQAMALETLEI 105
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 72.2 bits (176), Expect = 3e-17
Identities = 34/82 (41%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMEL 60
PG+GKGTQA++IV+KYG HISTGD+ R + G+ G M G LV +V + +
Sbjct: 8 LPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEVTIGI 67
Query: 61 LGEKVLKELPNSKGYLIDGYPR 82
+ E++ + G+L+DG+PR
Sbjct: 68 VRERL-SKSDCDNGFLLDGFPR 88
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 72.3 bits (176), Expect = 4e-17
Identities = 41/90 (45%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMEL 60
PG+GKGTQA K+ + + H++TGD+LR V SGS G L M G LVS ++V+E
Sbjct: 11 PPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLE- 69
Query: 61 LGEKVLKELPNSKGYLIDGYPREKAQGEQF 90
L EK L+ P G+L+DG+PR Q E
Sbjct: 70 LIEKNLETPPCKNGFLLDGFPRTVRQAEML 99
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 71.9 bits (175), Expect = 5e-17
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMEL 60
PG+GKGTQA K+ +K G ISTG+L R + G+ G + + + G LV +D+ EL
Sbjct: 8 PPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNEL 67
Query: 61 LGEKVLKELPNSKGYLIDGYPREKAQGEQFE 91
+ + L + G+++DGYPR Q +
Sbjct: 68 V-DDRLNNPDAANGFILDGYPRSVEQAKALH 97
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 70.0 bits (170), Expect = 2e-16
Identities = 37/83 (44%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMEL 60
P +GKGTQA+ I++KYG ISTGD+LR V SGS G +M G LV+ ++V+ L
Sbjct: 8 APVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIAL 67
Query: 61 LGEKVLKELPNSKGYLIDGYPRE 83
+ E++ +E G+L+DG+PR
Sbjct: 68 VKERIAQE-DCRNGFLLDGFPRT 89
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 70.0 bits (170), Expect = 3e-16
Identities = 60/93 (64%), Positives = 77/93 (82%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMEL 60
GPGSGKGTQ EKIVQKYGYTH+STGDLLR EV+SGSARG LS++M+ G LV + V+++
Sbjct: 16 GPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVLDM 75
Query: 61 LGEKVLKELPNSKGYLIDGYPREKAQGEQFERE 93
L + ++ ++ SKG+LIDGYPRE QGE+FER+
Sbjct: 76 LRDAMVAKVDTSKGFLIDGYPREVKQGEEFERK 108
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 194
Score = 69.2 bits (168), Expect = 5e-16
Identities = 35/95 (36%), Positives = 58/95 (61%), Gaps = 4/95 (4%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSAR-GADLSKVMKDGGLVSTDVVME 59
GPG+GKGTQ +IV+KYGYTH+S G+LLR+E + ++ G + K +K+G +V ++ +
Sbjct: 9 GPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITIS 68
Query: 60 LLGE---KVLKELPNSKGYLIDGYPREKAQGEQFE 91
LL + + +LIDG+PR + + +
Sbjct: 69 LLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWN 103
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 68.4 bits (166), Expect = 8e-16
Identities = 30/86 (34%), Positives = 55/86 (63%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMEL 60
PG+GKGTQA + +++ H++TGD+LR ++ G+ G + K+M GGLVS D+++ +
Sbjct: 10 PPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNM 69
Query: 61 LGEKVLKELPNSKGYLIDGYPREKAQ 86
+ +++ G+++DG+PR Q
Sbjct: 70 IKDELTNNPACKNGFILDGFPRTIPQ 95
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 63.7 bits (154), Expect = 5e-14
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMEL 60
PGSGKGT + +I + + H+S+GDLLR+ + G+ G + G L+ DV+ L
Sbjct: 14 APGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMTRL 73
Query: 61 LGEKVLKELPNSKGYLIDGYPR 82
+ + +L+DG+PR
Sbjct: 74 V--LHELKNLTQYNWLLDGFPR 93
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 62.3 bits (150), Expect = 2e-13
Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMEL 60
GPGSGKGTQ IV+ +G+ H+S GDLLR+E SGS G ++ M G + +V
Sbjct: 14 GPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDG-EMIATMIKNGEIVPSIVTVK 72
Query: 61 LGEKVLKELPNSKGYLIDGYPREKAQGEQFER 92
L + + K +L+DG+PR + +E
Sbjct: 73 LLKNAIDA-NQGKNFLVDGFPRNEENNNSWEE 103
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 59.2 bits (142), Expect = 4e-12
Identities = 39/95 (41%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEV-NSGSARGADLSKVMKDGGLVSTDVVME 59
GPG+GKGTQ EK+V+ Y + H+S GDLLR E +GS G + +K+G +V ++ +
Sbjct: 16 GPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLA 75
Query: 60 LLGEKVLKEL-PNSKGYLIDGYPREKAQGEQFERE 93
LL + + N +LIDG+PR+ Q FER+
Sbjct: 76 LLRNAISDNVKANKHKFLIDGFPRKMDQAISFERD 110
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 57.8 bits (138), Expect = 2e-11
Identities = 8/46 (17%), Positives = 19/46 (41%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMK 47
G+GKGT + + + + + +G + R + D++
Sbjct: 12 SGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDA 57
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae
[TaxId: 1313]}
Length = 223
Score = 52.3 bits (124), Expect = 1e-09
Identities = 14/63 (22%), Positives = 25/63 (39%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
SGK T A+ I + +G+T++ TG + R + +V L+ +
Sbjct: 12 ASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLALLDQHPISFGR 71
Query: 62 GEK 64
E
Sbjct: 72 SET 74
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 44.6 bits (104), Expect = 6e-07
Identities = 10/91 (10%), Positives = 29/91 (31%), Gaps = 8/91 (8%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
G GK T +++ + + GD++ V G + +++ + + +
Sbjct: 11 AGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELL--------ALTWKNI 62
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQGEQFER 92
+ + L ++D +
Sbjct: 63 TDLTVNFLLAQNDVVLDYIAFPDEAEALAQT 93
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 41.1 bits (95), Expect = 1e-05
Identities = 10/96 (10%), Positives = 26/96 (27%), Gaps = 2/96 (2%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDG--GLVSTDVVM 58
PG G T ++ + ++ + V A+ +L T +
Sbjct: 9 VPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPETQKRI 68
Query: 59 ELLGEKVLKELPNSKGYLIDGYPREKAQGEQFERED 94
+ + + + E+ +D +
Sbjct: 69 QKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLP 104
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 40.7 bits (94), Expect = 2e-05
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLRE 30
PG GK T +++ K G +I+ GDL RE
Sbjct: 13 PGVGKTTLGKELASKSGLKYINVGDLARE 41
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 40.4 bits (93), Expect = 2e-05
Identities = 13/100 (13%), Positives = 26/100 (26%), Gaps = 9/100 (9%)
Query: 2 PGSGKGTQAEKIVQKYG-----YTHISTGDLLREEVNSGSARGA--DLSKVMKDGGLVST 54
PG GK T K+ + I+ GD + ++ K+ +
Sbjct: 10 PGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQ 69
Query: 55 DVVMELLGEKVLKELPNSKGYLIDGYPREKAQGEQFERED 94
+ + E+ ID + +
Sbjct: 70 IDAAKGIAEEARAGG--EGYLFIDTHAVIRTPSGYLPGLP 107
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 39.3 bits (90), Expect = 4e-05
Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 5/92 (5%)
Query: 1 GPGSGKGTQAEKIVQKY-GYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVME 59
PGSGK T A + + K G+ +I+ D + + A +
Sbjct: 10 CPGSGKSTWAREFIAKNPGFYNINRDDYRQSIM----AHEERDEYKYTKKKEGIVTGMQF 65
Query: 60 LLGEKVLKELPNSKGYLIDGYPREKAQGEQFE 91
+ +L + KG +I + +E
Sbjct: 66 DTAKSILYGGDSVKGVIISDTNLNPERRLAWE 97
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania
major [TaxId: 5664]}
Length = 174
Score = 37.3 bits (85), Expect = 2e-04
Identities = 12/85 (14%), Positives = 29/85 (34%), Gaps = 6/85 (7%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
PG+GK + AE I + L +E + + + + + L
Sbjct: 14 PGTGKTSMAEMIAAELDGFQHLEVGKLVKENHF------YTEYDTELDTHIIEEKDEDRL 67
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQ 86
+ + + + +++D + E
Sbjct: 68 LDFMEPIMVSRGNHVVDYHSSELFP 92
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 37.3 bits (85), Expect = 2e-04
Identities = 11/90 (12%), Positives = 21/90 (23%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKDGGLVSTDVVMELL 61
GSGK A ++ + + L A G L+ + L + + +
Sbjct: 15 SGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAM 74
Query: 62 GEKVLKELPNSKGYLIDGYPREKAQGEQFE 91
L +
Sbjct: 75 QRTNKVSLIVCSALKKHYRDLLREGNPNLS 104
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 35.7 bits (81), Expect = 9e-04
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 2 PGSGKGTQAEKIVQKYGYTHIST-GDLLREEVNSGSA 37
PGSGK T AE + G + D L + G
Sbjct: 13 PGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRI 49
>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase
{Bacteriophage T4 [TaxId: 10665]}
Length = 241
Score = 35.3 bits (80), Expect = 0.002
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLREEV 32
SGK T A+ I+ Y +++ +
Sbjct: 9 VKRSGKDTTADFIMSNYSAVKYQLAGPIKDAL 40
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 32.0 bits (71), Expect = 0.016
Identities = 6/23 (26%), Positives = 8/23 (34%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHIS 23
G SGK K+ + T
Sbjct: 15 GESSGKSVLVNKLAAVFNTTSAW 37
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 30.6 bits (68), Expect = 0.043
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDL 27
PG+GK T ++ + GY H++ L
Sbjct: 23 PGAGKSTFIQEHLVSAGYVHVNRDTL 48
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 29.9 bits (66), Expect = 0.096
Identities = 6/36 (16%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 2 PGSGKGTQAEKIVQKYGYTHIST----GDLLREEVN 33
P GK ++K+ + + + T R ++
Sbjct: 11 PARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMV 46
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia
chrysanthemi [TaxId: 556]}
Length = 170
Score = 28.8 bits (63), Expect = 0.19
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGD 26
G G T ++ + GY + T
Sbjct: 11 RGCGMTTVGRELARALGYEFVDTDI 35
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli
[TaxId: 562]}
Length = 210
Score = 28.0 bits (61), Expect = 0.46
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHISTGDLLRE 30
G+GK T +V+ I RE
Sbjct: 10 LEGAGKTTARNVVVETLEQLGIRDMVFTRE 39
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 26.6 bits (57), Expect = 1.2
Identities = 5/32 (15%), Positives = 12/32 (37%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVN 33
G+GK T ++ Q+ + + +
Sbjct: 11 MGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG 42
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter
jejuni [TaxId: 197]}
Length = 161
Score = 26.4 bits (57), Expect = 1.2
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 2 PGSGKGTQAEKIVQKYGYTHIST 24
GSGK T A + + + +
Sbjct: 9 MGSGKSTLARALAKDLDLVFLDS 31
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 26.5 bits (57), Expect = 1.3
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 2 PGSGKGTQAEKIVQKYGYTHIST 24
PGSGK T ++ + G + T
Sbjct: 10 PGSGKSTIGRRLAKALGVGLLDT 32
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 197
Score = 26.1 bits (56), Expect = 1.6
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 3 GSGKGTQAEKIVQKYGYTHI 22
GSGK T + +
Sbjct: 19 GSGKTTYLNHFEKYKNDICL 38
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 26.1 bits (56), Expect = 1.7
Identities = 3/24 (12%), Positives = 7/24 (29%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTG 25
+GK + ++ G
Sbjct: 12 SSAGKSGIVRCLQSVLPEPWLAFG 35
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus
[TaxId: 10335]}
Length = 331
Score = 26.1 bits (57), Expect = 1.7
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 3 GSGKGTQAEKIVQKYGYTHISTGDLLREEVN 33
G GK T AE+ + + T L+ E ++
Sbjct: 15 GIGKTTAAEEFLHHFAITPNRI-LLIGEPLS 44
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase
(APS kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 25.8 bits (55), Expect = 2.3
Identities = 8/45 (17%), Positives = 15/45 (33%)
Query: 2 PGSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVM 46
G+GK T + + + I L + + G + S
Sbjct: 28 SGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPED 72
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 25.5 bits (54), Expect = 2.5
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHIS 23
SGK T A ++ Q IS
Sbjct: 30 LSRSGKTTLANQLSQTLREQGIS 52
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 25.3 bits (54), Expect = 2.6
Identities = 7/24 (29%), Positives = 10/24 (41%), Gaps = 1/24 (4%)
Query: 1 GP-GSGKGTQAEKIVQKYGYTHIS 23
GP GK T + ++ H S
Sbjct: 9 GPSAVGKSTVVRCLRERIPNLHFS 32
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 208
Score = 25.4 bits (54), Expect = 2.6
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 3 GSGKGTQAEKIVQKY 17
G+GK T EK+ +
Sbjct: 10 GAGKRTLVEKLSGAF 24
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
1, different strains [TaxId: 10298]}
Length = 329
Score = 25.7 bits (56), Expect = 2.8
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 3 GSGKGTQAEKIVQKYGYTHI 22
G GK T + +V I
Sbjct: 14 GMGKTTTTQLLVALGSRDDI 33
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 241
Score = 25.4 bits (54), Expect = 3.3
Identities = 6/46 (13%), Positives = 15/46 (32%)
Query: 3 GSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSARGADLSKVMKD 48
GK T + + + Y H++T + + + +
Sbjct: 12 AVGKSTFVKLLTKTYPEWHVATEPVATWQNIQAAGNQKACTAQSLG 57
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4
[TaxId: 10331]}
Length = 333
Score = 25.3 bits (55), Expect = 3.8
Identities = 5/31 (16%), Positives = 8/31 (25%), Gaps = 2/31 (6%)
Query: 3 GSGKGTQAEKIVQKYGYTHISTGDLLREEVN 33
G GK T + + E +
Sbjct: 16 GIGKSTTGRVMASAASGGSPTL--YFPEPMA 44
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 209
Score = 24.9 bits (53), Expect = 3.9
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 3 GSGKGTQAEKIVQK 16
+GK TQ+ K+V+
Sbjct: 13 RAGKSTQSRKLVEA 26
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus
subtilis [TaxId: 1423]}
Length = 423
Score = 25.1 bits (54), Expect = 4.2
Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 30 EEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKEL 69
E+ + D +++M V GE+++K +
Sbjct: 387 EKTIASKVVTYDFARLMDGATEVKCSEF----GEELIKNM 422
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 24.5 bits (52), Expect = 5.1
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHISTG 25
G SGK + KIVQ G +
Sbjct: 10 GTASGKSSVCAKIVQLLGQNEVDYR 34
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 214
Score = 24.5 bits (52), Expect = 5.3
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 4/35 (11%)
Query: 3 GSGKGTQAEKIVQKYGYTHISTGDLLREEVNSGSA 37
+GK TQ + +K LL+ S
Sbjct: 13 RTGKTTQCNILYKKLQ----PNCKLLKFPERSTRI 43
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 477
Score = 24.5 bits (53), Expect = 7.0
Identities = 5/30 (16%), Positives = 13/30 (43%)
Query: 74 GYLIDGYPREKAQGEQFEREDVVMELLGEK 103
++++ P ++ + +MELL
Sbjct: 427 THVVELLPESIDVLDKTGGKADIMELLNHS 456
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 24.5 bits (52), Expect = 7.0
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 1 GPGSGKGTQAEKIVQKYGYTHIS-TGDLLRE 30
PGSGK + I ++ I D ++
Sbjct: 40 QPGSGKTSLRSAIFEETQGNVIVIDNDTFKQ 70
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia
coli [TaxId: 562]}
Length = 416
Score = 24.4 bits (52), Expect = 7.4
Identities = 5/40 (12%), Positives = 14/40 (35%), Gaps = 4/40 (10%)
Query: 30 EEVNSGSARGADLSKVMKDGGLVSTDVVMELLGEKVLKEL 69
E + D ++M L+ G+ +++ +
Sbjct: 381 EGAINAKTVTYDFERLMDGAKLLKCSEF----GDAIIENM 416
>d2gkpa1 d.351.1.1 (A:1-164) Hypothetical protein NMB0488 {Neisseria
meningitidis [TaxId: 487]}
Length = 164
Score = 23.6 bits (51), Expect = 9.9
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 51 LVSTDVVMELLGEKVLKELPNSKGYLIDG------YPREKAQGEQFEREDVVMELLGEKV 104
++ D E LG VL+ L NS+ ++ D + EK + + + LG K
Sbjct: 41 ILPLDTDNETLGTTVLQALANSRTFVYDSPEDQDFFDTEKIRQRYEDWVAKLCGNLGYKT 100
Query: 105 LKEL 108
+ L
Sbjct: 101 RRAL 104
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.135 0.373
Gapped
Lambda K H
0.267 0.0449 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 572,840
Number of extensions: 25865
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 51
Length of query: 153
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 75
Effective length of database: 1,336,656
Effective search space: 100249200
Effective search space used: 100249200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 49 (23.4 bits)