BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11031
(520 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UKY|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
pdb|1UKZ|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
Length = 203
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 88/187 (47%), Gaps = 12/187 (6%)
Query: 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGD 286
V++V+GGPG+ K C+K+++DY ++ +S G LLR A G IK+ + G
Sbjct: 17 VIFVLGGPGAGKGTQCEKLVKDY-SFVHLSAGDLLR--AEQGRAGSQYGELIKNCIKEGQ 73
Query: 287 FVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLV 346
V +++ L ++ + +IDGFPR+M Q I FE ++ DC + +
Sbjct: 74 IVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDI 133
Query: 347 L---------HKGQIDNSVSAXXXXXXXXXXXTLPMLRAMDVETRLTIVDGDTQLPQVRE 397
+ G+ D+++ + ++P++ + ++++ V D + V +
Sbjct: 134 MLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYK 193
Query: 398 EFERVLK 404
+ + ++
Sbjct: 194 DVQDAIR 200
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 60 FLISGYPRNMRDVVEYSDKIKTINGVILIAWRQS-LLERQIDYGAKLGHV---ILSLARM 115
FLI G+PR M + + I ++ + +LER ++ G G I S+ +
Sbjct: 99 FLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKK- 157
Query: 116 ELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAV 157
F + PV ++F+ + ++ V +R+ +VY D + A+
Sbjct: 158 RFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAI 199
>pdb|1Z83|A Chain A, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|B Chain B, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|C Chain C, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|2C95|A Chain A, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
pdb|2C95|B Chain B, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
Length = 196
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 7/114 (6%)
Query: 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGD 286
+++VVGGPGS K C+K++Q Y +T +S G LLR + G ++ + G
Sbjct: 11 IIFVVGGPGSGKGTQCEKIVQKY-GYTHLSTGDLLRSEVS---SGSARGKKLSEIMEKGQ 66
Query: 287 FVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILI 340
V + VLD++ M K + G +IDG+PRE+ Q +FE + I P +L+
Sbjct: 67 LVPLETVLDMLRDAM-VAKVNTSKGFLIDGYPREVQQGEEFERR--IGQPTLLL 117
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 3/109 (2%)
Query: 57 AKAFLISGYPRNMRDVVEYSDKIKTINGVILI-AWRQSLLERQIDYGAKLGHVI--LSLA 113
+K FLI GYPR ++ E+ +I ++ + A +++ +R + G G V
Sbjct: 88 SKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRGETSGRVDDNEETI 147
Query: 114 RMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLKILN 162
+ L +Y+ PV F+++RG++ VN E + V++ T + +LN
Sbjct: 148 KKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDSVFSQVCTHLDALLN 196
>pdb|3ADK|A Chain A, Refined Structure Of Porcine Cytosolic Adenylate Kinase At
2.1 Angstroms Resolution
Length = 195
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 14/137 (10%)
Query: 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGD 286
+++VVGGPGS K C+K++Q Y +T +S G LLR A + G + + G
Sbjct: 11 IIFVVGGPGSGKGTQCEKIVQKY-GYTHLSTGDLLR--AEV-SSGSARGKMLSEIMEKGQ 66
Query: 287 FVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILI------ 340
V + VLD++ M K + G +IDG+PRE+ Q +FE K I P +L+
Sbjct: 67 LVPLETVLDMLRDAM-VAKVDTSKGFLIDGYPREVKQGEEFERK--IGQPTLLLYVDAGP 123
Query: 341 -DCSKLVLHKGQIDNSV 356
+K +L +G+ V
Sbjct: 124 ETMTKRLLKRGETSGRV 140
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 57 AKAFLISGYPRNMRDVVEYSDKIKTINGVILI-AWRQSLLERQIDYGAKLGHVI--LSLA 113
+K FLI GYPR ++ E+ KI ++ + A +++ +R + G G V
Sbjct: 88 SKGFLIDGYPREVKQGEEFERKIGQPTLLLYVDAGPETMTKRLLKRGETSGRVDDNEETI 147
Query: 114 RMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRT 155
+ L +Y+ PV F+++RG++ VN E + +V++ T
Sbjct: 148 KKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDDVFSQVCT 189
>pdb|2BWJ|A Chain A, Structure Of Adenylate Kinase 5
pdb|2BWJ|B Chain B, Structure Of Adenylate Kinase 5
pdb|2BWJ|C Chain C, Structure Of Adenylate Kinase 5
pdb|2BWJ|D Chain D, Structure Of Adenylate Kinase 5
pdb|2BWJ|E Chain E, Structure Of Adenylate Kinase 5
pdb|2BWJ|F Chain F, Structure Of Adenylate Kinase 5
Length = 199
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 70/136 (51%), Gaps = 13/136 (9%)
Query: 208 GVVSEPYRKIKSVERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANI 267
G E RK K +++++GGPGS K C+K+++ Y +T +S G+LLR
Sbjct: 3 GGFMEDLRKCK--------IIFIIGGPGSGKGTQCEKLVEKY-GFTHLSTGELLREELAS 53
Query: 268 EDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDF 327
E + L I+ + GD V +VL+++ M + + G +IDG+PRE+ Q +F
Sbjct: 54 ESERSKL---IRDIMERGDLVPSGIVLELLKEAMVAS-LGDTRGFLIDGYPREVKQGEEF 109
Query: 328 ENKYQIHPPMILIDCS 343
+ +I +DCS
Sbjct: 110 GRRIGDPQLVICMDCS 125
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 6/123 (4%)
Query: 40 SKTVTEVLMLEMKMSPA-AKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQ 98
S V E+L M S + FLI GYPR ++ E+ +I VI + + +
Sbjct: 73 SGIVLELLKEAMVASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNR 132
Query: 99 IDYGAK----LGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFR 154
+ ++ + ++A+ L +Y+ PV +++ + L +N E P +V+
Sbjct: 133 LLQMSRSSLPVDDTTKTIAK-RLEAYYRASIPVIAYYETKTQLHKINAEGTPEDVFLQLC 191
Query: 155 TAV 157
TA+
Sbjct: 192 TAI 194
>pdb|3UMF|A Chain A, Schistosoma Mansoni Adenylate Kinase
Length = 217
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 70/125 (56%), Gaps = 9/125 (7%)
Query: 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGD 286
V++V+GGPGS K C+K++Q + ++ +S G LLR A ++ G +K+ + G+
Sbjct: 31 VIFVLGGPGSGKGTQCEKLVQKF-HFNHLSSGDLLR--AEVQ-SGSPKGKELKAMMERGE 86
Query: 287 FVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILI--DCSK 344
V +VVL ++ M K +IDG+PRE+ Q I FE ++ P + +I D S+
Sbjct: 87 LVPLEVVLALLKEAMIKLVDKNCH-FLIDGYPRELDQGIKFEK--EVCPCLCVINFDVSE 143
Query: 345 LVLHK 349
V+ K
Sbjct: 144 EVMRK 148
>pdb|1TEV|A Chain A, Crystal Structure Of The Human UmpCMP KINASE IN OPEN
Conformation
Length = 196
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Query: 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSA 284
PLVV+V+GGPG+ K C ++++ Y +T +S G+LLR D G I+ +
Sbjct: 3 PLVVFVLGGPGAGKGTQCARIVEKY-GYTHLSAGELLRDERKNPDSQYG--ELIEKYIKE 59
Query: 285 GDFVNRDVVLDIVYAEMKKTKYTEA--DGIVIDGFPREMSQL 324
G V ++ + ++ EM +T A + +IDGFPR L
Sbjct: 60 GKIVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNL 101
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 80/175 (45%), Gaps = 20/175 (11%)
Query: 2 YGPPLYATSLLDFPSHRNPLKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMKMSPAAKA-- 59
YG + L +NP + + + +K+ + + +L EM + AA A
Sbjct: 27 YGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAANAQK 86
Query: 60 --FLISGYPRNMRDVVEYSDKIKTINGVILIAW-------RQSLLERQIDYGAKLGHVIL 110
FLI G+PRN ++ ++ KT++G +++ + +ER ++ G G
Sbjct: 87 NKFLIDGFPRNQDNLQGWN---KTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDD 143
Query: 111 SLARME--LANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLKILNK 163
+ +E + + Q+ P+ D +++ G + ++ ++ EV+ + V++I +K
Sbjct: 144 NRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDE----VVQIFDK 194
>pdb|1QF9|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog In UmpCMP
Kinase
pdb|5UKD|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog
pdb|1UKE|A Chain A, UmpCMP KINASE FROM SLIME MOLD
pdb|2UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP
pdb|3UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP, AND
Alf3
pdb|4UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, UDP,
Beryllium Fluoride
Length = 194
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 13/103 (12%)
Query: 220 VERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANI-EDDGEGLNSRI 278
+E++ P VV+V+GGPGS K C +++D+ W +S G LLR DGE + + I
Sbjct: 1 MEKSKPNVVFVLGGPGSGKGTQCANIVRDF-GWVHLSAGDLLRQEQQSGSKDGEMIATMI 59
Query: 279 KSSVSAGDFVNRDVVLDIVYAEMKKTKYTEADG--IVIDGFPR 319
K N ++V IV ++ K G ++DGFPR
Sbjct: 60 K---------NGEIVPSIVTVKLLKNAIDANQGKNFLVDGFPR 93
>pdb|1ZAK|A Chain A, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
pdb|1ZAK|B Chain B, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
Length = 222
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 7/119 (5%)
Query: 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSA 284
PL V + G P S K C+ + Y IS G LLR A I E R K +
Sbjct: 5 PLKVMISGAPASGKGTQCELIKTKY-QLAHISAGDLLR--AEIAAGSEN-GKRAKEFMEK 60
Query: 285 GDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHP-PMILIDC 342
G V ++V+++V +++ E +G ++DG+PR SQ + E +I P IL+D
Sbjct: 61 GQLVPDEIVVNMVKERLRQPDAQE-NGWLLDGYPRSYSQAMALET-LEIRPDTFILLDV 117
>pdb|3BE4|A Chain A, Crystal Structure Of Cryptosporidium Parvum Adenylate
Kinase Cgd5_3360
Length = 217
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 12/97 (12%)
Query: 230 VVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVN 289
++G PGS K C+ + ++Y +S G +LR +G + KS + +G+FV
Sbjct: 10 LIGAPGSGKGTQCEFIKKEY-GLAHLSTGDMLREAIK---NGTKIGLEAKSIIESGNFVG 65
Query: 290 RDVVLDIVYAEMKKTKY---TEADGIVIDGFPREMSQ 323
++VL +V K K+ +G V+DGFPR + Q
Sbjct: 66 DEIVLGLV-----KEKFDLGVCVNGFVLDGFPRTIPQ 97
>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus
Thermophilus Hb8
Length = 186
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 13/98 (13%)
Query: 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR-YFANIEDDGEGLNSRIKSSVSAG 285
V +G PG+ K ++ Q+ + ++S G +LR + A G L R++ + G
Sbjct: 6 AVIFLGPPGAGKGTQASRLAQEL-GFKKLSTGDILRDHVAR----GTPLGERVRPIMERG 60
Query: 286 DFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
D V D++L+++ E+ A+ ++ DGFPR ++Q
Sbjct: 61 DLVPDDLILELIREEL-------AERVIFDGFPRTLAQ 91
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 23/126 (18%)
Query: 47 LMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKTINGVILIA---------------WR 91
L+LE+ A+ + G+PR + E D++ + G L+ R
Sbjct: 67 LILELIREELAERVIFDGFPRTLAQA-EALDRLLSETGTRLLGVVLVEVPEEELVRRILR 125
Query: 92 QSLLERQIDYGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYA 151
++ LE + D + R L + + P+ +++ RG+L V+G P EVYA
Sbjct: 126 RAELEGRSDDNEET-------VRRRLEVYREKTEPLVGYYEARGVLKRVDGLGTPDEVYA 178
Query: 152 DFRTAV 157
R A+
Sbjct: 179 RIRAAL 184
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate
Kinase Complexed With Two Molecules Of Adp And Mg
Length = 201
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 220 VERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIK 279
V R + + V ++G PG+ K K L + QIS G+L R NIE+ G L K
Sbjct: 15 VPRGSHMRVLLLGPPGAGKGTQAVK-LAEKLGIPQISTGELFRR--NIEE-GTKLGVEAK 70
Query: 280 SSVSAGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
+ AGD V D+ ++V + A+G ++DG+PR + Q
Sbjct: 71 RYLDAGDLVPSDLTNELVDDRLNNPD--AANGFILDGYPRSVEQ 112
>pdb|1AKE|A Chain A, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic Transition
State
pdb|1AKE|B Chain B, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic Transition
State
pdb|1ANK|A Chain A, The Closed Conformation Of A Highly Flexible Protein: The
Structure Of E. Cloi Adenylate Kinase With Bound Amp And
Amppnp
pdb|1ANK|B Chain B, The Closed Conformation Of A Highly Flexible Protein: The
Structure Of E. Cloi Adenylate Kinase With Bound Amp And
Amppnp
pdb|4AKE|A Chain A, Adenylate Kinase
pdb|4AKE|B Chain B, Adenylate Kinase
pdb|2ECK|A Chain A, Structure Of Phosphotransferase
pdb|2ECK|B Chain B, Structure Of Phosphotransferase
pdb|3HPQ|A Chain A, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
pdb|3HPQ|B Chain B, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
Length = 214
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 228 VWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDF 287
+ ++G PG+ K Q +++ Y QIS G +LR G L + K + AG
Sbjct: 3 IILLGAPGAGKGTQAQFIMEKY-GIPQISTGDMLRAAVK---SGSELGKQAKDIMDAGKL 58
Query: 288 VNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
V ++V+ +V + + +G ++DGFPR + Q
Sbjct: 59 VTDELVIALVKERIAQEDCR--NGFLLDGFPRTIPQ 92
>pdb|3HPR|A Chain A, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
In Complex With Ap5a
pdb|3HPR|B Chain B, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
In Complex With Ap5a
Length = 214
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 228 VWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDF 287
+ ++G PG+ K Q +++ Y QIS G +LR G L + K + AG
Sbjct: 3 IILLGAPGAGKGTQAQFIMEKY-GIPQISTGDMLRAAVK---SGSELGKQAKDIMDAGKL 58
Query: 288 VNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
V ++V+ +V + + +G ++DGFPR + Q
Sbjct: 59 VTDELVIALVKERIAQEDCR--NGFLLDGFPRTIPQ 92
>pdb|1AK2|A Chain A, Adenylate Kinase Isoenzyme-2
pdb|2AK2|A Chain A, Adenylate Kinase Isoenzyme-2
Length = 233
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 230 VVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVN 289
++G PG+ K K+ +++ ++ G +LR G L ++K+++ AG V+
Sbjct: 21 LLGPPGAGKGTQAPKLAKNF-CVCHLATGDMLRAMVA---SGSELGKKLKATMDAGKLVS 76
Query: 290 RDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
++VL+++ ++ +G ++DGFPR + Q
Sbjct: 77 DEMVLELIEKNLETPPCK--NGFLLDGFPRTVRQ 108
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 31/157 (19%), Positives = 64/157 (40%), Gaps = 34/157 (21%)
Query: 37 FLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSD----KIKTINGVILIAWRQ 92
+S + V E++ ++ P FL+ G+PR +R D + + ++ VI +
Sbjct: 74 LVSDEMVLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPD 133
Query: 93 SLLERQI-----------DYGAKL------------GHVILSLA-------RMELANFYQ 122
SLL R+I Y + G ++ + ++ L ++
Sbjct: 134 SLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNKKALKIRLEAYHT 193
Query: 123 NVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLK 159
TP+ +++ +RG+ A++ + P V+A A K
Sbjct: 194 QTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFSK 230
>pdb|3TLX|A Chain A, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|B Chain B, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|C Chain C, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|D Chain D, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
Length = 243
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Query: 231 VGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNR 290
+G PGS K + + + + +S G LLR A + + L +IK+ ++ G V+
Sbjct: 35 LGAPGSGKGTQSLNLKKSHC-YCHLSTGDLLREAAEKKTE---LGLKIKNIINEGKLVDD 90
Query: 291 DVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDF 327
+VL +V ++K + + G ++DG+PR + Q D
Sbjct: 91 QMVLSLVDEKLKTPQCKK--GFILDGYPRNVKQAEDL 125
>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate
Kinase
Length = 181
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Query: 228 VWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDF 287
V ++G PG+ K K L + QIS G+L R NIE+ G L K + AGD
Sbjct: 3 VLLLGPPGAGKGTQAVK-LAEKLGIPQISTGELFRR--NIEE-GTKLGVEAKRYLDAGDL 58
Query: 288 VNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
V D+ ++V + A+G ++DG+PR + Q
Sbjct: 59 VPSDLTNELVDDRLNNPDA--ANGFILDGYPRSVEQ 92
>pdb|3FB4|A Chain A, Crystal Structure Of Adenylate Kinase From Marinibacillus
Marinus
Length = 216
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 228 VWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDF 287
+ ++G PG+ K +++++ Y IS G + R A I++ G L + KS + G+
Sbjct: 3 IVLMGLPGAGKGTQAEQIIEKY-EIPHISTGDMFR--AAIKN-GTELGLKAKSFMDQGNL 58
Query: 288 VNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
V +V + IV+ + K + G ++DGFPR ++Q
Sbjct: 59 VPDEVTIGIVHERLSKDDCQK--GFLLDGFPRTVAQ 92
>pdb|2OSB|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
pdb|2OSB|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
Length = 216
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 230 VVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVN 289
++G PG+ K + +++++DY IS G + R A E+ GL + KS + G+ V
Sbjct: 5 LMGLPGAGKGTLGERIVEDY-GIPHISTGDMFR-AAMKEETPLGLEA--KSYIDKGELVP 60
Query: 290 RDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
+V + IV + K G ++DGFPR ++Q
Sbjct: 61 DEVTIGIVKERLGKDDCER--GFLLDGFPRTVAQ 92
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 122 QNVTPVTDFFDQRGMLIAVNGERNPVEVYADFR 154
+ P+ DF+ ++G L VNG+R+ +VYAD +
Sbjct: 177 KQTQPLLDFYSEKGYLANVNGQRDIQDVYADVK 209
>pdb|2AK3|A Chain A, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
pdb|2AK3|B Chain B, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
Length = 226
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 9/105 (8%)
Query: 230 VVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVN 289
++G PGS K + ++ + + +S G LLR + G + K+ + G +
Sbjct: 11 IMGAPGSGKGTVSSRITKHF-ELKHLSSGDLLR---DNMLRGTEIGVLAKTFIDQGKLIP 66
Query: 290 RDVVLDIVYAEMKK-TKYTEADGIVIDGFPREMSQLIDFENKYQI 333
DV+ +V E+K T+Y ++DGFPR + Q + YQI
Sbjct: 67 DDVMTRLVLHELKNLTQYN----WLLDGFPRTLPQAEALDRAYQI 107
>pdb|3DKV|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse1
Length = 217
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 228 VWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDF 287
+ ++G PG+ K +++++ Y IS G + R A E+ GL + KS + G+
Sbjct: 3 IVLMGLPGAGKGTQAERIVEKY-GIPHISTGDMFRA-AMKEETPLGLEA--KSYIDKGEL 58
Query: 288 VNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
V +V + IV + K+ G ++DGFPR ++Q
Sbjct: 59 VPDEVTIGIVRERLSKSDCER--GFLLDGFPRTVAQ 92
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 22/33 (66%)
Query: 122 QNVTPVTDFFDQRGMLIAVNGERNPVEVYADFR 154
+ P+ F+D + +L+ VNG+++ +V+AD +
Sbjct: 177 KQTAPLLAFYDSKEVLVNVNGQQDIQDVFADVK 209
>pdb|2C9Y|A Chain A, Structure Of Human Adenylate Kinase 2
Length = 242
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 230 VVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVN 289
++G PG+ K ++ +++ ++ G +LR G L ++K+++ AG V+
Sbjct: 21 LLGPPGAGKGTQAPRLAENF-CVCHLATGDMLRAMVA---SGSELGKKLKATMDAGKLVS 76
Query: 290 RDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
++V++++ ++ +G ++DGFPR + Q
Sbjct: 77 DEMVVELIEKNLETPLCK--NGFLLDGFPRTVRQ 108
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 32/165 (19%), Positives = 67/165 (40%), Gaps = 34/165 (20%)
Query: 37 FLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSD----KIKTINGVILIAWRQ 92
+S + V E++ ++ FL+ G+PR +R D + + ++ VI +
Sbjct: 74 LVSDEMVVELIEKNLETPLCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPD 133
Query: 93 SLLERQI-----------DYGAKL------------GHVILSLA-------RMELANFYQ 122
SLL R+I Y + G ++ + ++ L ++
Sbjct: 134 SLLIRRITGRLIHPKSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNEKALKIRLQAYHT 193
Query: 123 NVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLKILNKNNVV 167
TP+ +++ +RG+ A++ + P V+A A K K+ V+
Sbjct: 194 QTTPLIEYYRKRGIHSAIDASQTPDVVFASILAAFSKATCKDLVM 238
>pdb|2P3S|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (G214rQ199R)
Length = 217
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 230 VVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVN 289
++G PG+ K +++++DY IS G + R A E+ GL + KS + G+ V
Sbjct: 5 LMGLPGAGKGTQGERIVEDY-GIPHISTGDMFR-AAMKEETPLGLEA--KSYIDKGELVP 60
Query: 290 RDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
+V + IV + K G ++DGFPR ++Q
Sbjct: 61 DEVTIGIVKERLGKDDCER--GFLLDGFPRTVAQ 92
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 122 QNVTPVTDFFDQRGMLIAVNGERNPVEVYADFR 154
+ P+ DF+ ++G L VNG+R+ +VYAD +
Sbjct: 177 KQTQPLLDFYSEKGYLANVNGQRDIQDVYADVK 209
>pdb|2QAJ|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
pdb|2QAJ|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
Length = 217
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 230 VVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVN 289
++G PG+ K +++++DY IS G + R A E+ GL + KS + G+ V
Sbjct: 5 LMGLPGAGKGTQGERIVEDY-GIPHISTGDMFR-AAMKEETPLGLEA--KSYIDKGELVP 60
Query: 290 RDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
+V + IV + K G ++DGFPR ++Q
Sbjct: 61 DEVTIGIVKERLGKDDCER--GFLLDGFPRTVAQ 92
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 122 QNVTPVTDFFDQRGMLIAVNGERNPVEVYADFR 154
+ P+ DF+ ++G L VNG+R+ +VYAD +
Sbjct: 177 KQTQPLLDFYSEKGYLANVNGQRDIQDVYADVK 209
>pdb|2EU8|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
pdb|2EU8|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
Length = 216
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 230 VVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVN 289
++G PG+ K +++++DY IS G + R A E+ GL + KS + G+ V
Sbjct: 5 LMGLPGAGKGTQGERIVEDY-GIPHISTGDMFR-AAMKEETPLGLEA--KSYIDKGELVP 60
Query: 290 RDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
+V + IV + K G ++DGFPR ++Q
Sbjct: 61 DEVTIGIVKERLGKDDCER--GFLLDGFPRTVAQ 92
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 122 QNVTPVTDFFDQRGMLIAVNGERNPVEVYADFR 154
+ P+ DF+ ++G L VNG+R+ +VYAD +
Sbjct: 177 KQTQPLLDFYSEKGYLANVNGQRDIQDVYADVK 209
>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p)
pdb|3NDP|B Chain B, Crystal Structure Of Human Ak4(L171p)
Length = 231
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 230 VVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVN 289
++G PGS K +CQ++ Q++ +S G LR NI+ E + K + V
Sbjct: 10 ILGPPGSGKGTVCQRIAQNF-GLQHLSSGHFLR--ENIKASTE-VGEMAKQYIEKSLLVP 65
Query: 290 RDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
V+ ++ +E++ + ++DGFPR + Q
Sbjct: 66 DHVITRLMMSELENRR---GQHWLLDGFPRTLGQ 96
>pdb|2OO7|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
pdb|2OO7|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
Length = 217
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 230 VVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVN 289
++G PG+ K +++++DY IS G + R A E+ GL + KS + G+ V
Sbjct: 5 LMGLPGAGKGTQGERIVEDY-GIPHISTGDMFR-AAMKEETPLGLEA--KSYIDKGELVP 60
Query: 290 RDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
+V + IV + K G ++DGFPR ++Q
Sbjct: 61 DEVTIGIVKERLGKDDCER--GFLLDGFPRTVAQ 92
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 122 QNVTPVTDFFDQRGMLIAVNGERNPVEVYADFR 154
+ + P+ DF+ ++G L VNG+R+ +VYAD +
Sbjct: 177 KQIQPLLDFYSEKGYLANVNGQRDIQDVYADVK 209
>pdb|2ORI|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
pdb|2ORI|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
Length = 216
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 230 VVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVN 289
++G PG+ K +++++DY IS G + R A E+ GL + KS + G+ V
Sbjct: 5 LMGLPGAGKGTQGERIVEDY-GIPHISTGDMFR-AAMKEETPLGLEA--KSYIDKGELVP 60
Query: 290 RDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
+V + IV + K G ++DGFPR ++Q
Sbjct: 61 DEVTIGIVKERLGKDDCER--GFLLDGFPRTVAQ 92
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 122 QNVTPVTDFFDQRGMLIAVNGERNPVEVYADFR 154
+ P+ DF+ ++G L+ VNG+R+ +VYAD +
Sbjct: 177 KQTQPLLDFYSEKGYLVNVNGQRDIQDVYADVK 209
>pdb|1E4V|A Chain A, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4V|B Chain B, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 228 VWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDF 287
+ ++G P + K Q +++ Y QIS G +LR G L + K + AG
Sbjct: 3 IILLGAPVAGKGTQAQFIMEKY-GIPQISTGDMLRAAVK---SGSELGKQAKDIMDAGKL 58
Query: 288 VNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
V ++V+ +V + + +G ++DGFPR + Q
Sbjct: 59 VTDELVIALVKERIAQEDCR--NGFLLDGFPRTIPQ 92
>pdb|1P3J|A Chain A, Adenylate Kinase From Bacillus Subtilis
Length = 217
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 230 VVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVN 289
++G PG+ K +++++DY IS G + R A E+ GL + KS + G+ V
Sbjct: 5 LMGLPGAGKGTQGERIVEDY-GIPHISTGDMFR-AAMKEETPLGLEA--KSYIDKGELVP 60
Query: 290 RDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
+V + IV + K G ++DGFPR ++Q
Sbjct: 61 DEVTIGIVKERLGKDDCER--GFLLDGFPRTVAQ 92
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 122 QNVTPVTDFFDQRGMLIAVNGERNPVEVYADFR 154
+ P+ DF+ ++G L VNG+++ +VYAD +
Sbjct: 177 KQTQPLLDFYSEKGYLANVNGQQDIQDVYADVK 209
>pdb|1S3G|A Chain A, Crystal Structure Of Adenylate Kinase From Bacillus
Globisporus
Length = 217
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 228 VWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDF 287
+ ++G PG+ K ++++ Y IS G + R A I++ G L + KS + G
Sbjct: 3 IVLMGLPGAGKGTQADRIVEKY-GTPHISTGDMFR--AAIQE-GTELGVKAKSFMDQGAL 58
Query: 288 VNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
V +V + IV + K+ +G ++DGFPR + Q
Sbjct: 59 VPDEVTIGIVRERLSKSDCD--NGFLLDGFPRTVPQ 92
>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2AR7|B Chain B, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2BBW|A Chain A, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
pdb|2BBW|B Chain B, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
Length = 246
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 230 VVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVN 289
++G PGS K +CQ++ Q++ +S G LR NI+ E + K + V
Sbjct: 32 ILGPPGSGKGTVCQRIAQNF-GLQHLSSGHFLR--ENIKASTE-VGEMAKQYIEKSLLVP 87
Query: 290 RDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
V+ ++ +E++ + ++DGFPR + Q
Sbjct: 88 DHVITRLMMSELENRR---GQHWLLDGFPRTLGQ 118
>pdb|1ZIN|A Chain A, Adenylate Kinase With Bound Ap5a
pdb|1ZIO|A Chain A, Phosphotransferase
pdb|1ZIP|A Chain A, Bacillus Stearothermophilus Adenylate Kinase
Length = 217
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 230 VVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVN 289
++G PG+ K +K++ Y IS G + R +G L + K + GD V
Sbjct: 5 LMGLPGAGKGTQAEKIVAAY-GIPHISTGDMFRAAMK---EGTPLGLQAKQYMDRGDLVP 60
Query: 290 RDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
+V + IV + K +G ++DGFPR ++Q
Sbjct: 61 DEVTIGIVRERLSKDDCQ--NGFLLDGFPRTVAQ 92
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 122 QNVTPVTDFFDQRGMLIAVNGERNPVEVYADFR 154
+ + P+ DF++Q+G L +NGE++ +V+AD R
Sbjct: 177 KQMKPLVDFYEQKGYLRNINGEQDMEKVFADIR 209
>pdb|1ZD8|A Chain A, Structure Of Human Adenylate Kinase 3 Like 1
Length = 227
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 9/105 (8%)
Query: 230 VVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVN 289
++G PGS K + ++ + +S G LLR + G + K+ + G +
Sbjct: 12 IMGAPGSGKGTVSSRITTHF-ELKHLSSGDLLR---DNMLRGTEIGVLAKAFIDQGKLIP 67
Query: 290 RDVVLDIVYAEMKK-TKYTEADGIVIDGFPREMSQLIDFENKYQI 333
DV+ + E+K T+Y+ ++DGFPR + Q + YQI
Sbjct: 68 DDVMTRLALHELKNLTQYS----WLLDGFPRTLPQAEALDRAYQI 108
>pdb|3DL0|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse3
pdb|3DL0|B Chain B, Crystal Structure Of Adenylate Kinase Variant Aklse3
Length = 216
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 122 QNVTPVTDFFDQRGMLIAVNGERNPVEVYADFR 154
+ P+ DF+D++G L+ VNG+++ +VYAD +
Sbjct: 177 KQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLK 209
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 230 VVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVN 289
++G PG+ K +++++ Y IS G + R A E+ GL + KS + G+ V
Sbjct: 5 LMGLPGAGKGTQGERIVEKY-GIPHISTGDMFRA-AMKEETPLGLEA--KSYIDKGELVP 60
Query: 290 RDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
+V + IV + K G ++DGFPR ++Q
Sbjct: 61 DEVTIGIVKERLGKDDCER--GFLLDGFPRTVAQ 92
>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex
Aeolicus In Complex With Ap5a
pdb|2RH5|A Chain A, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|C Chain C, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|B Chain B, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|3SR0|A Chain A, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
pdb|3SR0|B Chain B, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
Length = 206
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 47/98 (47%), Gaps = 9/98 (9%)
Query: 226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAG 285
+++ +G PG+ K +++ ++ + IS G +LR G L + K + G
Sbjct: 1 MILVFLGPPGAGKGTQAKRLAKE-KGFVHISTGDILREAVQ---KGTPLGKKAKEYMERG 56
Query: 286 DFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
+ V D+++ ++ + + + ++ DGFPR + Q
Sbjct: 57 ELVPDDLIIALI-----EEVFPKHGNVIFDGFPRTVKQ 89
>pdb|3AKY|A Chain A, Stability, Activity And Structure Of Adenylate Kinase
Mutants
Length = 220
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 114 RMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLKILNKN 164
+ LA ++ P+ DF+ + G+ V+ + P V+ADF L L KN
Sbjct: 174 KKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADF----LNKLGKN 220
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 230 VVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVN 289
++G PG+ K LQ+ + ++ G +LR + I G L K + G V+
Sbjct: 9 LIGPPGAGKGTQAPN-LQERFHAAHLATGDMLR--SQIAK-GTQLGLEAKKIMDQGGLVS 64
Query: 290 RDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
D++++++ E+ + +G ++DGFPR + Q
Sbjct: 65 DDIMVNMIKDELTNNPACK-NGFILDGFPRTIPQ 97
>pdb|1E4Y|A Chain A, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4Y|B Chain B, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Query: 228 VWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDF 287
+ ++G + K Q +++ Y QIS G +LR G L + K + AG
Sbjct: 3 IILLGALVAGKGTQAQFIMEKY-GIPQISTGDMLRAAVK---SGSELGKQAKDIMDAGKL 58
Query: 288 VNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
V ++V+ +V + + +G ++DGFPR + Q
Sbjct: 59 VTDELVIALVKERIAQEDCR--NGFLLDGFPRTIPQ 92
>pdb|3GMT|A Chain A, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
pdb|3GMT|B Chain B, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
Length = 230
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Query: 230 VVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVN 289
++G PG+ K + + + QIS G LR G L K+ G V
Sbjct: 13 LLGAPGAGKGTQANFIKEKF-GIPQISTGDXLRAAVKA---GTPLGVEAKTYXDEGKLVP 68
Query: 290 RDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
+++ +V +K+ A+G + DGFPR ++Q
Sbjct: 69 DSLIIGLVKERLKEADC--ANGYLFDGFPRTIAQ 100
>pdb|1AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
pdb|2AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
Length = 220
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 230 VVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVN 289
++G PG+ K LQ+ + ++ G +LR + I G L K + G V+
Sbjct: 9 LIGPPGAGKGTQAPN-LQERFHAAHLATGDMLR--SQIAK-GTQLGLEAKKIMDQGGLVS 64
Query: 290 RDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
D++++++ E+ + +G ++DGFPR + Q
Sbjct: 65 DDIMVNMIKDELTNNPACK-NGFILDGFPRTIPQ 97
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 114 RMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLKILNKN 164
+ LA ++ P+ DF+ + G+ V+ + P V+AD +L L KN
Sbjct: 174 KKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWAD----ILNKLGKN 220
>pdb|1DVR|A Chain A, Structure Of A Mutant Adenylate Kinase Ligated With An
Atp- Analogue Showing Domain Closure Over Atp
pdb|1DVR|B Chain B, Structure Of A Mutant Adenylate Kinase Ligated With An
Atp- Analogue Showing Domain Closure Over Atp
Length = 220
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 114 RMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLKILNKN 164
+ LA ++ P+ DF+ + G+ V+ + P V+AD +L L KN
Sbjct: 174 KKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWAD----ILNKLGKN 220
>pdb|2CJU|H Chain H, Crystal Structure Of The Tepc15-Vk45.1 Anti-2-Phenyl-5-
Oxazolone Nq16-113.8 Scfv In Complex With Phoxgaba
Length = 121
Score = 32.3 bits (72), Expect = 0.61, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 26/57 (45%)
Query: 249 YPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTK 305
Y NW + GK L + +I + G + +SV ++RD I+Y EM +
Sbjct: 33 YMNWVRQPPGKALEWLVSIRNKANGYTTDYSASVKGRFTISRDNSQSILYLEMNNLR 89
>pdb|3L6W|A Chain A, Structure Of The Collar Functional Unit (Klh1-H) Of
Keyhole Limpet Hemocyanin
pdb|3L6W|B Chain B, Structure Of The Collar Functional Unit (Klh1-H) Of
Keyhole Limpet Hemocyanin
pdb|3QJO|A Chain A, Refined Structure Of The Functional Unit (Klh1-H) Of
Keyhole Limpet Hemocyanin
pdb|3QJO|B Chain B, Refined Structure Of The Functional Unit (Klh1-H) Of
Keyhole Limpet Hemocyanin
Length = 491
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Query: 249 YPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKYTE 308
Y +WTQ ++ L +FA+ ++ I+S +N+D V D+ A ++TK+ E
Sbjct: 91 YWDWTQ-TISSLPTFFADSGNNNPFFKYHIRS-------INQDTVRDVNEAIFQQTKFGE 142
Query: 309 ADGIVIDGFPR-EMSQLIDFENKYQI 333
I E DFE +Y+I
Sbjct: 143 FSSIFYLALQALEEDNYCDFEVQYEI 168
>pdb|3PHO|B Chain B, Crystal Structure Of S64-4 In Complex With Psbp
Length = 222
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 234 PGSSKSEMCQK----VLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVN 289
PG S C + Y +W + GK L + I + G G + +SV ++
Sbjct: 14 PGGSLRLSCATSGFTFIDYYMSWVRQPPGKALEWLGFIRNKGNGYTTEYSTSVKGRFTIS 73
Query: 290 RDVVLDIVYAEM 301
RD IVY +M
Sbjct: 74 RDNSQSIVYLQM 85
>pdb|2XMP|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XMP|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XA2|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA2|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
Length = 416
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 371 LPMLRAMDVETRLTIVDGDTQLPQVREEFERVLK-----KIIDDLENTARPRDKRNHTAL 425
+P+LR++ +E R +++G T+ V + F L+ K+ ++++ ++ N +
Sbjct: 63 VPLLRSIGIEARWFVIEGPTEFFNVTKTFHNALQGNESLKLTEEMKELYLNVNRENSKFI 122
Query: 426 SLDN-DNTVVHD 436
L + D +VHD
Sbjct: 123 DLSSFDYVLVHD 134
>pdb|2X6Q|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6Q|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6R|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
pdb|2X6R|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
Length = 416
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 371 LPMLRAMDVETRLTIVDGDTQLPQVREEFERVLK-----KIIDDLENTARPRDKRNHTAL 425
+P+LR++ +E R +++G T+ V + F L+ K+ ++++ ++ N +
Sbjct: 63 VPLLRSIGIEARWFVIEGPTEFFNVTKTFHNALQGNESLKLTEEMKELYLNVNRENSKFI 122
Query: 426 SLDN-DNTVVHD 436
L + D +VHD
Sbjct: 123 DLSSFDYVLVHD 134
>pdb|3L0P|A Chain A, Crystal Structures Of Iron Containing Adenylate Kinase
From Desulfovibrio Gigas
pdb|3L0S|A Chain A, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
pdb|3L0S|C Chain C, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
Length = 223
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 233 GPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDV 292
GP S +++D + I G + R G L + K + GD V D+
Sbjct: 7 GPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIG---GGTELGKKAKEFIDRGDLVPDDI 63
Query: 293 VLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
+ +V ++ DG ++DGFPR Q
Sbjct: 64 TIPMVLETLESKG---KDGWLLDGFPRNTVQ 91
>pdb|2XB4|A Chain A, Crystal Structures Of Zinc Containing Adenylate Kinase
From Desulfovibrio Gigas
Length = 223
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 233 GPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDV 292
GP S +++D + I G + R G L + K + GD V D+
Sbjct: 7 GPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIG---GGTELGKKAKEFIDRGDLVPDDI 63
Query: 293 VLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
+ +V ++ DG ++DGFPR Q
Sbjct: 64 TIPMVLETLESKG---KDGWLLDGFPRNTVQ 91
>pdb|2A87|A Chain A, Crystal Structure Of M. Tuberculosis Thioredoxin Reductase
pdb|2A87|B Chain B, Crystal Structure Of M. Tuberculosis Thioredoxin Reductase
Length = 335
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 376 AMDVETRLTIVDGDTQLPQVREEFERVLKKIIDDLENTARPRDKRNHTALSLDNDNTV 433
AM+ T LT L R+EF R K ++D N + R NHT +++D D TV
Sbjct: 167 AMEEATFLTRFARSVTLVHRRDEF-RASKIMLDRARNNDKIRFLTNHTVVAVDGDTTV 223
>pdb|1KEL|H Chain H, Catalytic Antibody 28b4 Fab Fragment Complexed With Hapten
(1-[n-4'-Nitrobenzyl-N-4'-Carboxybutylamino]
Methylphosphonic Acid)
pdb|1KEM|H Chain H, Catalytic Antibody 28b4 Fab Fragment
Length = 218
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 249 YPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEM 301
Y NW + GK L + I + +G + +SV ++RD I+Y +M
Sbjct: 33 YFNWARQPPGKALEWLGFIRNKAKGYTTEYSASVKGRFTISRDNSQGILYLQM 85
>pdb|3LYD|A Chain A, Crystal Structure Of Putative Uncharacterized Protein From
Jonesia Denitrificans
pdb|3LYD|B Chain B, Crystal Structure Of Putative Uncharacterized Protein From
Jonesia Denitrificans
Length = 161
Score = 30.0 bits (66), Expect = 3.0, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 172 PLVNGNAIPVPETLPPQV---QSIAATVHSPPKHFTRPN 207
P + G +P+PET P AA H+PP+ FT PN
Sbjct: 15 PALTGFTVPIPETWQPDPTXGTQFAARPHTPPQGFT-PN 52
>pdb|1CLO|H Chain H, Anti-Carcinoembryonic Antigen Monoclonal Antibody A5b7
Length = 222
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 9/90 (10%)
Query: 216 KIKSVERNTPLVVWVVGGPGSSKSEMCQK---VLQDYP-NWTQISLGKLLRYFANIEDDG 271
++K VE LV PG S C DY NW + GK L + I +
Sbjct: 1 EVKLVESGGGLVQ-----PGGSLRLSCATSGFTFTDYYMNWVRQPPGKALEWLGFIGNKA 55
Query: 272 EGLNSRIKSSVSAGDFVNRDVVLDIVYAEM 301
G + +SV ++RD I+Y +M
Sbjct: 56 NGYTTEYSASVKGRFTISRDKSQSILYLQM 85
>pdb|3DUS|B Chain B, Crystal Structure Of Sag506-01, Orthorhombic, Twinned,
Crystal 1
pdb|3DUS|D Chain D, Crystal Structure Of Sag506-01, Orthorhombic, Twinned,
Crystal 1
pdb|3DUU|B Chain B, Crystal Structure Of Sag506-01, Orthorhombic, Twinned,
Crystal 2
pdb|3DUU|D Chain D, Crystal Structure Of Sag506-01, Orthorhombic, Twinned,
Crystal 2
pdb|3DV4|B Chain B, Crystal Structure Of Sag506-01, Tetragonal, Crystal 1
pdb|3DV6|B Chain B, Crystal Structure Of Sag506-01, Tetragonal, Crystal 2
Length = 121
Score = 30.0 bits (66), Expect = 3.7, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 7/75 (9%)
Query: 249 YPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKK----- 303
Y +W + GK L + I + +G +SV ++RD I+Y +M
Sbjct: 33 YMSWVRQPPGKALEWLGFIRNKAKGYTVEYSASVKGRFTISRDNSQSILYLQMNTLRAED 92
Query: 304 --TKYTEADGIVIDG 316
T Y DG +D
Sbjct: 93 SATYYCARDGYYVDA 107
>pdb|2AEP|H Chain H, An Epidemiologically Significant Epitope Of A 1998
Influenza Virus Neuraminidase Forms A Highly Hydrated
Interface In The Na-Antibody Complex.
pdb|2AEQ|H Chain H, An Epidemiologically Significant Epitope Of A 1998
Influenza Virus Neuraminidase Forms A Highly Hydrated
Interface In The Na-Antibody Complex
Length = 217
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 9/90 (10%)
Query: 216 KIKSVERNTPLVVWVVGGPGSSKSEMCQK----VLQDYPNWTQISLGKLLRYFANIEDDG 271
++K VE LV PG S S C + Y +W + GK L + I + G
Sbjct: 1 EVKLVESGGGLVQ-----PGGSLSLSCATSGFTFIDYYMSWFRQPPGKALEWLGLIRNKG 55
Query: 272 EGLNSRIKSSVSAGDFVNRDVVLDIVYAEM 301
G +S+ ++RD IVY M
Sbjct: 56 NGYTMEYSASLKGRFTISRDNSQSIVYLHM 85
>pdb|3PHQ|B Chain B, Crystal Structure Of S64-4 In Complex With Kdo
Length = 222
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 234 PGSSKSEMCQK----VLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVN 289
PG S C + Y +W + GK L + I + G G + +SV ++
Sbjct: 14 PGGSLRLSCATSGFTFIDYYMSWVRQPPGKALEWLGFIRNKGNGYTTEYSTSVKGRFTIS 73
Query: 290 RDVVLDIVYAEM 301
RD VY +M
Sbjct: 74 RDNSQSAVYLQM 85
>pdb|2XA1|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
pdb|2XA1|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
Length = 416
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 371 LPMLRAMDVETRLTIVDGDTQLPQVREEFERVLK-----KIIDDLENTARPRDKRNHTAL 425
+P+LR++ +E R +++G T+ V + F L+ K+ ++ + ++ N +
Sbjct: 63 VPLLRSIGIEARWFVIEGPTEFFNVTKTFHNALQGNESLKLTEEXKELYLNVNRENSKFI 122
Query: 426 SLDN-DNTVVHD 436
L + D +VHD
Sbjct: 123 DLSSFDYVLVHD 134
>pdb|3DUR|B Chain B, Crystal Structure Of Sag173-04
pdb|3DUR|D Chain D, Crystal Structure Of Sag173-04
Length = 121
Score = 29.3 bits (64), Expect = 5.1, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 7/75 (9%)
Query: 249 YPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKK----- 303
Y +W + GK L + I + +G + +SV ++RD I+Y +M
Sbjct: 33 YMSWVRQPPGKALEWLGFIRNKAKGYTTEYSASVKGRFSISRDNSQSILYLQMNTLRAED 92
Query: 304 --TKYTEADGIVIDG 316
T Y DG D
Sbjct: 93 SATYYCARDGYYADA 107
>pdb|3HZY|B Chain B, Crystal Structure Of S73-2 Antibody In Complex With
Antigen Kdo(2.4)kdo(2.4)kdo
Length = 226
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 249 YPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEM 301
Y +W + GK L++ A I + +G + +SV ++RD +Y +M
Sbjct: 33 YMSWVRQPPGKALKWLAFIRNKAKGYTTEYSASVKGRFTISRDNSQSFLYLQM 85
>pdb|3HZK|B Chain B, Crystal Structure Of S73-2 Antibody In Complex With
Antigen Kdo(2.4)kdo
pdb|3HZV|B Chain B, Crystal Structure Of S73-2 Antibody In Complex With
Antigen Kdo(2.8) Kdo(2.4)kdo
Length = 226
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 249 YPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEM 301
Y +W + GK L + A I + +G + SSV ++RD +Y +M
Sbjct: 33 YMSWVRQPPGKALEWLAFIRNKAKGYTTEYSSSVKGRFTISRDNSQSFLYLQM 85
>pdb|3HZM|B Chain B, Crystal Structure Of S73-2 Antibody In Complex With
Antigen Kdo
Length = 225
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 249 YPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEM 301
Y +W + GK L + A I + +G + SSV ++RD +Y +M
Sbjct: 33 YMSWVRQPPGKALEWLAFIRNKAKGYTTEYSSSVKGRFTISRDNSQSFLYLQM 85
>pdb|3IJH|B Chain B, Structure Of S67-27 In Complex With Ko
pdb|3IJH|D Chain D, Structure Of S67-27 In Complex With Ko
pdb|3IJS|B Chain B, Structure Of S67-27 In Complex With Tsbp
pdb|3IJS|D Chain D, Structure Of S67-27 In Complex With Tsbp
pdb|3IJY|B Chain B, Structure Of S67-27 In Complex With Kdo(2.8)kdo
pdb|3IJY|D Chain D, Structure Of S67-27 In Complex With Kdo(2.8)kdo
pdb|3IKC|B Chain B, Structure Of S67-27 In Complex With
Kdo(2.8)-7-O-Methyl-Kdo
pdb|3IKC|D Chain D, Structure Of S67-27 In Complex With
Kdo(2.8)-7-O-Methyl-Kdo
Length = 226
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 12/81 (14%)
Query: 249 YPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEM------- 301
Y +W + GK L + I + +G + +SV ++RD I+Y +M
Sbjct: 33 YMSWVRQPPGKALEWLGFIRNKAKGYTTEYSASVKGRFTISRDNSQSILYLQMNTLRAED 92
Query: 302 KKTKYTEAD-----GIVIDGF 317
T Y D G+ +GF
Sbjct: 93 SATYYCARDISPSYGVYYEGF 113
>pdb|3L1O|H Chain H, Crystal Structure Of Monoclonal Antibody Mn423 Fab
Fragment With Free Combining Site, Crystallized In The
Presence Of Zinc
Length = 227
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 249 YPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEM 301
Y +W + GK L + A I + +G + +SV ++RD I+Y +M
Sbjct: 33 YMSWVRQPPGKALEWLALIRNKAKGYTTEYSASVKGRFTISRDNSQSILYLQM 85
>pdb|2V17|H Chain H, Structure Of The Complex Of Antibody Mn423 With A Fragment
Of Tau Protein
Length = 222
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 249 YPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEM 301
Y +W + GK L + A I + +G + +SV ++RD I+Y +M
Sbjct: 33 YMSWVRQPPGKALEWLALIRNKAKGYTTEYSASVKGRFTISRDNSQSILYLQM 85
>pdb|3GHB|H Chain H, Crystal Structure Of Anti-Hiv-1 Fab 447-52d In Complex
With V3 Peptide W2rw020
pdb|3GHB|I Chain I, Crystal Structure Of Anti-Hiv-1 Fab 447-52d In Complex
With V3 Peptide W2rw020
Length = 235
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 249 YPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMK--KTKY 306
+ NW + + GK L + I+ +G + +SV ++RD + +Y +M KT+
Sbjct: 33 WLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMNSLKTED 92
Query: 307 TEADGIVIDGF 317
T DGF
Sbjct: 93 TAVYSCTTDGF 103
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,748,940
Number of Sequences: 62578
Number of extensions: 662398
Number of successful extensions: 1766
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1679
Number of HSP's gapped (non-prelim): 105
length of query: 520
length of database: 14,973,337
effective HSP length: 103
effective length of query: 417
effective length of database: 8,527,803
effective search space: 3556093851
effective search space used: 3556093851
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)