Query psy11031
Match_columns 520
No_of_seqs 410 out of 2518
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 16:22:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11031.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11031hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3079|consensus 100.0 9.7E-40 2.1E-44 302.9 19.9 179 221-405 4-193 (195)
2 PLN02674 adenylate kinase 100.0 7.2E-36 1.6E-40 295.1 20.9 175 223-403 29-243 (244)
3 PLN02459 probable adenylate ki 100.0 2.4E-34 5.2E-39 285.7 21.2 183 223-410 27-256 (261)
4 PRK14529 adenylate kinase; Pro 100.0 3.8E-33 8.2E-38 272.6 18.9 170 227-403 2-222 (223)
5 PRK13808 adenylate kinase; Pro 100.0 5.7E-33 1.2E-37 284.6 20.3 176 227-408 2-196 (333)
6 TIGR01351 adk adenylate kinase 100.0 1.8E-32 3.8E-37 266.3 20.4 171 227-403 1-209 (210)
7 PRK14528 adenylate kinase; Pro 100.0 2.2E-32 4.7E-37 261.1 20.0 171 226-402 2-185 (186)
8 PRK14531 adenylate kinase; Pro 100.0 2.6E-32 5.6E-37 259.7 20.0 172 225-403 2-182 (183)
9 PRK14526 adenylate kinase; Pro 100.0 3.1E-32 6.8E-37 264.9 20.4 172 227-405 2-209 (211)
10 PTZ00088 adenylate kinase 1; P 100.0 8.6E-32 1.9E-36 264.7 20.4 173 223-402 4-228 (229)
11 PRK00279 adk adenylate kinase; 100.0 4E-31 8.8E-36 257.6 20.2 173 227-405 2-214 (215)
12 PRK14532 adenylate kinase; Pro 100.0 1.6E-30 3.4E-35 247.7 20.7 172 227-404 2-186 (188)
13 PRK14527 adenylate kinase; Pro 100.0 2.5E-30 5.4E-35 247.5 20.4 174 223-403 4-190 (191)
14 PF00406 ADK: Adenylate kinase 100.0 2.8E-31 6E-36 244.5 13.2 146 230-381 1-150 (151)
15 PRK02496 adk adenylate kinase; 100.0 3.7E-30 8E-35 244.5 20.6 172 226-403 2-182 (184)
16 PLN02200 adenylate kinase fami 100.0 7.2E-30 1.6E-34 252.2 22.0 179 220-405 38-224 (234)
17 TIGR01359 UMP_CMP_kin_fam UMP- 100.0 1.4E-29 3.1E-34 239.6 20.1 170 227-403 1-182 (183)
18 PRK14530 adenylate kinase; Pro 100.0 1.5E-28 3.2E-33 239.6 20.1 169 226-405 4-213 (215)
19 COG0563 Adk Adenylate kinase a 100.0 1.2E-28 2.6E-33 233.5 17.5 167 226-403 1-177 (178)
20 KOG3079|consensus 100.0 1.5E-28 3.3E-33 228.3 16.3 147 12-159 32-193 (195)
21 PLN02842 nucleotide kinase 100.0 4.8E-28 1E-32 259.3 19.9 180 229-416 1-213 (505)
22 KOG3078|consensus 100.0 4.1E-28 8.9E-33 235.7 15.8 180 224-410 14-229 (235)
23 cd01428 ADK Adenylate kinase ( 100.0 6.8E-28 1.5E-32 229.6 16.8 163 227-395 1-194 (194)
24 TIGR01360 aden_kin_iso1 adenyl 99.9 1.7E-26 3.7E-31 218.6 21.1 175 225-404 3-186 (188)
25 PLN02674 adenylate kinase 99.9 4.7E-27 1E-31 232.4 16.9 147 10-157 53-243 (244)
26 PLN02459 probable adenylate ki 99.9 2.9E-27 6.2E-32 235.1 14.6 148 10-159 51-251 (261)
27 PRK14528 adenylate kinase; Pro 99.9 4.1E-25 8.9E-30 211.0 15.1 145 11-156 24-185 (186)
28 PRK13808 adenylate kinase; Pro 99.9 4.2E-25 9.1E-30 226.7 15.8 153 10-163 22-197 (333)
29 PRK14529 adenylate kinase; Pro 99.9 9.5E-25 2.1E-29 213.5 17.3 134 19-157 44-222 (223)
30 TIGR01351 adk adenylate kinase 99.9 3.9E-24 8.5E-29 207.7 16.1 146 11-157 22-209 (210)
31 PRK14526 adenylate kinase; Pro 99.9 7E-24 1.5E-28 206.4 16.9 146 12-159 24-209 (211)
32 PTZ00088 adenylate kinase 1; P 99.9 1.4E-23 3.1E-28 206.5 13.8 145 10-156 28-228 (229)
33 PRK14531 adenylate kinase; Pro 99.9 1.1E-22 2.3E-27 193.6 14.3 142 10-157 24-182 (183)
34 PRK14527 adenylate kinase; Pro 99.9 2.3E-22 5E-27 192.4 15.4 144 12-157 30-190 (191)
35 PRK00279 adk adenylate kinase; 99.9 1.4E-21 3E-26 190.5 17.8 148 11-159 23-214 (215)
36 KOG3078|consensus 99.9 5.9E-22 1.3E-26 192.7 14.5 150 12-163 39-228 (235)
37 PF00406 ADK: Adenylate kinase 99.9 5.3E-22 1.1E-26 182.7 11.5 118 12-136 20-151 (151)
38 PRK14532 adenylate kinase; Pro 99.9 6.4E-21 1.4E-25 181.6 17.9 148 10-158 22-186 (188)
39 PRK02496 adk adenylate kinase; 99.9 5.8E-21 1.3E-25 181.3 17.1 143 12-157 25-182 (184)
40 TIGR01359 UMP_CMP_kin_fam UMP- 99.9 5.6E-21 1.2E-25 180.8 15.1 144 12-157 23-182 (183)
41 PLN02200 adenylate kinase fami 99.8 1.1E-20 2.4E-25 186.7 15.4 147 11-161 66-226 (234)
42 PRK14530 adenylate kinase; Pro 99.8 9E-20 1.9E-24 177.8 15.9 144 11-159 26-213 (215)
43 PLN02842 nucleotide kinase 99.8 1.7E-19 3.7E-24 193.6 17.2 143 15-163 37-206 (505)
44 COG0563 Adk Adenylate kinase a 99.8 7.3E-19 1.6E-23 166.8 14.1 137 12-157 24-177 (178)
45 cd01428 ADK Adenylate kinase ( 99.8 5.2E-18 1.1E-22 161.5 14.7 137 12-149 23-194 (194)
46 TIGR01360 aden_kin_iso1 adenyl 99.7 7.5E-17 1.6E-21 152.6 17.8 146 13-159 28-187 (188)
47 PRK13974 thymidylate kinase; P 99.7 2.1E-16 4.6E-21 153.9 14.9 177 225-408 3-209 (212)
48 PRK01184 hypothetical protein; 99.6 5.6E-14 1.2E-18 133.3 18.7 165 226-406 2-179 (184)
49 PRK08356 hypothetical protein; 99.6 2E-14 4.4E-19 138.1 14.7 166 226-405 6-192 (195)
50 PRK13973 thymidylate kinase; P 99.5 5E-13 1.1E-17 130.3 17.4 164 225-408 3-209 (213)
51 PRK03839 putative kinase; Prov 99.5 2.4E-13 5.2E-18 128.7 14.7 147 227-405 2-153 (180)
52 PLN02924 thymidylate kinase 99.5 1.2E-12 2.6E-17 128.5 16.4 176 223-411 14-209 (220)
53 PRK13975 thymidylate kinase; P 99.4 6.7E-12 1.4E-16 120.0 17.2 169 225-409 2-194 (196)
54 PRK08233 hypothetical protein; 99.4 4.8E-12 1E-16 119.1 14.5 167 225-405 3-177 (182)
55 COG0125 Tmk Thymidylate kinase 99.4 8.5E-12 1.9E-16 121.1 15.6 176 224-408 2-206 (208)
56 PRK06217 hypothetical protein; 99.4 1.1E-11 2.3E-16 117.9 15.8 154 226-405 2-179 (183)
57 PHA02530 pseT polynucleotide k 99.4 2.9E-12 6.3E-17 130.7 12.4 159 225-394 2-171 (300)
58 PRK08118 topology modulation p 99.3 1.3E-11 2.7E-16 116.2 11.0 89 226-346 2-91 (167)
59 PRK13949 shikimate kinase; Pro 99.3 5.3E-11 1.1E-15 112.1 14.9 151 227-402 3-168 (169)
60 TIGR00041 DTMP_kinase thymidyl 99.3 6.5E-11 1.4E-15 113.0 15.0 166 225-399 3-195 (195)
61 PRK13976 thymidylate kinase; P 99.3 1.6E-10 3.5E-15 112.6 17.6 175 226-412 1-208 (209)
62 KOG3327|consensus 99.2 6.2E-11 1.4E-15 111.0 12.2 169 223-408 3-198 (208)
63 PRK00698 tmk thymidylate kinas 99.2 1.5E-10 3.2E-15 111.1 14.9 170 225-407 3-204 (205)
64 PRK13974 thymidylate kinase; P 99.2 1.3E-10 2.8E-15 113.3 13.6 140 14-161 44-208 (212)
65 PF02223 Thymidylate_kin: Thym 99.2 2.4E-10 5.3E-15 108.5 13.0 159 230-399 1-186 (186)
66 cd01672 TMPK Thymidine monopho 99.1 2.6E-09 5.6E-14 101.3 17.5 167 226-404 1-199 (200)
67 PRK07933 thymidylate kinase; V 99.1 1.1E-09 2.3E-14 107.0 13.2 168 226-403 1-211 (213)
68 PRK03731 aroL shikimate kinase 99.1 2.7E-09 5.8E-14 100.0 15.2 154 226-404 3-169 (171)
69 smart00072 GuKc Guanylate kina 99.1 8.2E-10 1.8E-14 105.2 11.9 161 226-405 3-182 (184)
70 PRK04040 adenylate kinase; Pro 99.1 4.6E-09 1E-13 100.7 15.7 167 225-403 2-187 (188)
71 PRK14730 coaE dephospho-CoA ki 99.0 4.7E-09 1E-13 101.1 14.6 159 226-403 2-192 (195)
72 PRK04182 cytidylate kinase; Pr 99.0 5E-09 1.1E-13 98.2 14.3 160 227-405 2-173 (180)
73 PRK13947 shikimate kinase; Pro 99.0 9.3E-09 2E-13 96.1 15.1 150 227-401 3-163 (171)
74 PRK00081 coaE dephospho-CoA ki 99.0 1.1E-08 2.4E-13 98.4 15.0 161 226-404 3-192 (194)
75 PRK00131 aroK shikimate kinase 98.9 1.8E-08 3.9E-13 93.7 14.0 160 224-405 3-171 (175)
76 COG0703 AroK Shikimate kinase 98.9 2.1E-08 4.6E-13 94.1 14.1 158 226-406 3-169 (172)
77 PRK13948 shikimate kinase; Pro 98.9 1.9E-08 4.2E-13 95.9 13.8 160 223-407 8-177 (182)
78 TIGR02173 cyt_kin_arch cytidyl 98.9 5.3E-08 1.2E-12 90.6 16.0 157 227-403 2-170 (171)
79 COG1102 Cmk Cytidylate kinase 98.9 2E-08 4.4E-13 92.6 12.5 159 227-405 2-172 (179)
80 PRK14734 coaE dephospho-CoA ki 98.9 2.8E-08 6E-13 96.2 14.1 165 226-409 2-198 (200)
81 cd02030 NDUO42 NADH:Ubiquinone 98.9 2.9E-08 6.2E-13 97.3 14.1 171 227-401 1-217 (219)
82 PRK06762 hypothetical protein; 98.9 5.7E-08 1.2E-12 90.5 15.0 151 225-403 2-162 (166)
83 PRK14738 gmk guanylate kinase; 98.9 2.5E-08 5.4E-13 96.8 12.9 170 221-406 9-195 (206)
84 PRK00625 shikimate kinase; Pro 98.9 4.7E-08 1E-12 92.5 14.0 104 227-346 2-108 (173)
85 PRK07261 topology modulation p 98.9 7.3E-09 1.6E-13 97.7 8.4 91 226-346 1-91 (171)
86 PRK12339 2-phosphoglycerate ki 98.8 1.3E-08 2.7E-13 98.4 9.9 158 224-389 2-182 (197)
87 PRK10078 ribose 1,5-bisphospho 98.8 1.1E-07 2.3E-12 90.8 16.2 159 226-405 3-176 (186)
88 PRK14021 bifunctional shikimat 98.8 3.1E-08 6.7E-13 109.6 14.2 163 222-405 3-176 (542)
89 PRK13946 shikimate kinase; Pro 98.8 1.6E-07 3.5E-12 89.4 16.3 160 224-409 9-180 (184)
90 PRK05057 aroK shikimate kinase 98.8 1.1E-07 2.3E-12 89.9 14.8 157 225-404 4-170 (172)
91 PF13671 AAA_33: AAA domain; P 98.8 2.5E-08 5.4E-13 90.0 9.7 105 227-347 1-111 (143)
92 PRK14731 coaE dephospho-CoA ki 98.8 9.8E-08 2.1E-12 92.9 14.2 167 223-407 3-204 (208)
93 TIGR01313 therm_gnt_kin carboh 98.8 1.9E-07 4E-12 86.8 14.2 152 228-404 1-162 (163)
94 COG1936 Predicted nucleotide k 98.8 2.1E-07 4.5E-12 87.0 14.2 150 226-405 1-156 (180)
95 TIGR00152 dephospho-CoA kinase 98.7 7.6E-08 1.6E-12 91.9 11.2 157 227-400 1-187 (188)
96 PLN02199 shikimate kinase 98.7 3.6E-07 7.9E-12 92.8 16.2 165 224-410 101-293 (303)
97 cd02020 CMPK Cytidine monophos 98.7 3.9E-08 8.4E-13 88.9 8.2 137 227-388 1-146 (147)
98 PRK00023 cmk cytidylate kinase 98.7 2.2E-07 4.7E-12 91.6 13.9 37 225-262 4-40 (225)
99 cd02022 DPCK Dephospho-coenzym 98.7 1.9E-07 4E-12 88.6 12.9 127 227-365 1-156 (179)
100 TIGR03574 selen_PSTK L-seryl-t 98.7 1.6E-07 3.6E-12 93.6 13.1 156 227-405 1-169 (249)
101 PF13207 AAA_17: AAA domain; P 98.7 2.7E-08 5.8E-13 87.4 6.6 35 227-262 1-35 (121)
102 TIGR02322 phosphon_PhnN phosph 98.7 5.8E-07 1.3E-11 84.7 16.0 160 226-405 2-178 (179)
103 cd00227 CPT Chloramphenicol (C 98.7 4.6E-07 9.9E-12 85.5 15.2 161 225-403 2-174 (175)
104 PRK09825 idnK D-gluconate kina 98.7 3.1E-07 6.7E-12 87.1 13.8 160 225-409 3-172 (176)
105 PRK00300 gmk guanylate kinase; 98.7 8.7E-07 1.9E-11 85.3 16.9 163 224-407 4-186 (205)
106 TIGR03263 guanyl_kin guanylate 98.7 2.7E-07 5.8E-12 86.9 12.7 159 226-404 2-179 (180)
107 PLN02422 dephospho-CoA kinase 98.7 4.5E-07 9.7E-12 89.7 14.5 162 227-407 3-196 (232)
108 PRK08154 anaerobic benzoate ca 98.7 3.5E-07 7.6E-12 94.4 14.1 158 222-406 130-302 (309)
109 cd00464 SK Shikimate kinase (S 98.6 3.2E-07 6.8E-12 83.8 11.7 101 228-347 2-105 (154)
110 KOG3347|consensus 98.6 3.4E-07 7.4E-12 83.5 11.4 144 224-398 6-159 (176)
111 PRK14732 coaE dephospho-CoA ki 98.6 1.1E-06 2.3E-11 85.0 15.5 161 228-409 2-194 (196)
112 PRK14733 coaE dephospho-CoA ki 98.6 1.8E-06 3.8E-11 83.9 16.6 164 223-406 4-199 (204)
113 COG0237 CoaE Dephospho-CoA kin 98.6 6.4E-07 1.4E-11 86.8 13.0 167 225-410 2-197 (201)
114 cd01673 dNK Deoxyribonucleosid 98.6 4.8E-07 1E-11 86.4 11.5 28 227-255 1-28 (193)
115 cd02021 GntK Gluconate kinase 98.5 1.1E-06 2.3E-11 80.4 12.3 105 227-347 1-111 (150)
116 PF01202 SKI: Shikimate kinase 98.5 8.9E-07 1.9E-11 82.3 11.3 146 234-404 1-158 (158)
117 PRK13477 bifunctional pantoate 98.5 1.4E-06 3.1E-11 95.2 14.0 39 224-263 283-321 (512)
118 PRK05541 adenylylsulfate kinas 98.5 2.2E-06 4.8E-11 80.7 13.3 158 223-406 5-173 (176)
119 PRK13951 bifunctional shikimat 98.5 9.8E-07 2.1E-11 96.4 12.3 145 227-399 2-155 (488)
120 TIGR00017 cmk cytidylate kinas 98.5 6.5E-07 1.4E-11 87.8 9.9 37 225-262 2-38 (217)
121 PRK13973 thymidylate kinase; P 98.5 1.7E-06 3.7E-11 84.5 12.6 143 12-161 37-208 (213)
122 PRK14737 gmk guanylate kinase; 98.5 3.4E-06 7.3E-11 80.8 14.3 162 224-405 3-184 (186)
123 PTZ00451 dephospho-CoA kinase; 98.4 3.3E-06 7.1E-11 84.2 13.4 162 226-405 2-207 (244)
124 COG0283 Cmk Cytidylate kinase 98.4 5.1E-06 1.1E-10 80.4 13.4 38 225-263 4-41 (222)
125 PRK05480 uridine/cytidine kina 98.4 7.7E-06 1.7E-10 79.2 14.7 41 222-262 3-45 (209)
126 PRK03333 coaE dephospho-CoA ki 98.4 6.8E-06 1.5E-10 87.7 15.0 173 226-415 2-202 (395)
127 PRK05537 bifunctional sulfate 98.3 5.8E-06 1.3E-10 92.0 13.9 164 219-405 386-562 (568)
128 PRK03846 adenylylsulfate kinas 98.3 1.2E-05 2.7E-10 77.4 13.9 159 222-405 21-192 (198)
129 PRK00889 adenylylsulfate kinas 98.3 6.5E-06 1.4E-10 77.4 11.3 160 224-405 3-170 (175)
130 PRK11545 gntK gluconate kinase 98.3 1.2E-05 2.5E-10 75.3 12.8 152 231-404 1-159 (163)
131 PRK09518 bifunctional cytidyla 98.3 1.8E-06 3.9E-11 98.7 8.9 36 227-263 3-38 (712)
132 PF01121 CoaE: Dephospho-CoA k 98.3 7.1E-06 1.5E-10 78.2 11.4 147 227-393 2-179 (180)
133 TIGR00235 udk uridine kinase. 98.3 9.1E-06 2E-10 78.8 12.1 42 221-262 2-45 (207)
134 TIGR00455 apsK adenylylsulfate 98.3 1.1E-05 2.4E-10 76.6 12.3 158 223-402 16-183 (184)
135 COG0194 Gmk Guanylate kinase [ 98.2 5.2E-05 1.1E-09 72.0 15.4 161 224-406 3-183 (191)
136 PRK11860 bifunctional 3-phosph 98.2 9.8E-06 2.1E-10 92.0 12.6 172 223-405 440-655 (661)
137 PRK06547 hypothetical protein; 98.2 3E-06 6.4E-11 80.2 6.8 40 222-262 12-51 (172)
138 PRK01184 hypothetical protein; 98.2 6.2E-05 1.3E-09 71.3 15.5 142 12-161 24-180 (184)
139 PRK08356 hypothetical protein; 98.2 2.3E-05 5E-10 75.3 12.5 120 26-160 66-193 (195)
140 COG4088 Predicted nucleotide k 98.1 1.2E-05 2.6E-10 77.3 9.4 158 226-404 2-172 (261)
141 PRK05506 bifunctional sulfate 98.1 3E-05 6.4E-10 87.7 14.0 163 223-405 458-628 (632)
142 PRK12338 hypothetical protein; 98.1 0.00014 3.1E-09 75.0 17.6 39 224-263 3-41 (319)
143 PF00625 Guanylate_kin: Guanyl 98.1 2.2E-05 4.9E-10 74.5 10.9 165 225-405 2-182 (183)
144 PRK03839 putative kinase; Prov 98.1 4.3E-05 9.4E-10 72.1 12.7 128 11-161 23-155 (180)
145 PF13238 AAA_18: AAA domain; P 98.0 2.6E-06 5.7E-11 74.8 2.8 22 228-249 1-22 (129)
146 PRK12269 bifunctional cytidyla 98.0 3.3E-05 7.2E-10 89.3 12.4 37 225-262 34-70 (863)
147 PF06414 Zeta_toxin: Zeta toxi 98.0 1.4E-05 3E-10 77.1 7.9 110 222-346 12-133 (199)
148 cd02019 NK Nucleoside/nucleoti 98.0 1.2E-05 2.6E-10 64.3 6.1 23 227-249 1-23 (69)
149 PRK04220 2-phosphoglycerate ki 98.0 0.00011 2.3E-09 75.3 13.1 39 223-262 90-128 (301)
150 PRK05416 glmZ(sRNA)-inactivati 97.9 0.00019 4.2E-09 73.4 14.8 139 225-403 6-158 (288)
151 PRK12337 2-phosphoglycerate ki 97.9 0.00017 3.6E-09 77.7 14.6 39 223-262 253-291 (475)
152 KOG3220|consensus 97.9 0.00027 5.8E-09 67.8 13.3 158 227-403 3-192 (225)
153 PHA03132 thymidine kinase; Pro 97.9 0.0001 2.2E-09 81.5 12.0 120 224-347 256-415 (580)
154 cd02024 NRK1 Nicotinamide ribo 97.8 7.6E-05 1.6E-09 71.6 9.0 36 227-262 1-36 (187)
155 TIGR01663 PNK-3'Pase polynucle 97.8 0.0001 2.2E-09 81.1 11.1 93 222-347 366-461 (526)
156 PRK06696 uridine kinase; Valid 97.8 7.6E-05 1.6E-09 73.3 8.5 41 222-262 19-63 (223)
157 COG2019 AdkA Archaeal adenylat 97.8 0.001 2.2E-08 62.2 15.2 163 225-404 4-187 (189)
158 cd02027 APSK Adenosine 5'-phos 97.8 0.00018 3.9E-09 66.2 10.4 106 227-348 1-111 (149)
159 cd02023 UMPK Uridine monophosp 97.8 0.00028 6.1E-09 67.6 12.1 36 227-262 1-38 (198)
160 PF07931 CPT: Chloramphenicol 97.8 6.1E-05 1.3E-09 71.4 7.3 160 226-403 2-173 (174)
161 KOG3354|consensus 97.8 0.00038 8.2E-09 64.2 11.9 158 223-404 10-187 (191)
162 KOG3877|consensus 97.8 0.00063 1.4E-08 68.1 14.1 171 223-402 69-294 (393)
163 COG4639 Predicted kinase [Gene 97.7 0.00012 2.6E-09 67.6 8.2 106 225-347 2-110 (168)
164 COG1428 Deoxynucleoside kinase 97.7 0.00029 6.2E-09 68.3 11.2 30 225-255 4-33 (216)
165 COG0645 Predicted kinase [Gene 97.7 0.00017 3.6E-09 67.6 9.0 110 226-347 2-117 (170)
166 KOG3327|consensus 97.7 0.00045 9.8E-09 65.4 11.2 143 6-163 33-199 (208)
167 PRK07667 uridine kinase; Provi 97.7 0.00012 2.5E-09 70.4 7.5 38 225-262 17-58 (193)
168 PRK12724 flagellar biosynthesi 97.7 0.00016 3.5E-09 77.2 9.1 96 224-332 222-326 (432)
169 PF01583 APS_kinase: Adenylyls 97.6 0.00018 4E-09 66.9 7.9 38 224-262 1-42 (156)
170 PF01591 6PF2K: 6-phosphofruct 97.6 0.00016 3.5E-09 71.1 7.9 155 223-391 10-197 (222)
171 PRK05800 cobU adenosylcobinami 97.6 5.1E-05 1.1E-09 71.7 4.0 35 227-262 3-39 (170)
172 TIGR03575 selen_PSTK_euk L-ser 97.6 0.00012 2.5E-09 76.5 7.0 34 228-262 2-41 (340)
173 PTZ00301 uridine kinase; Provi 97.6 0.0011 2.3E-08 64.9 12.7 38 225-262 3-46 (210)
174 PRK08233 hypothetical protein; 97.6 0.0006 1.3E-08 63.8 10.5 125 24-159 47-177 (182)
175 PHA02530 pseT polynucleotide k 97.5 0.00039 8.5E-09 70.9 9.7 91 56-149 74-172 (300)
176 PLN02772 guanylate kinase 97.5 0.0015 3.3E-08 69.2 14.2 161 224-404 134-317 (398)
177 PF08433 KTI12: Chromatin asso 97.5 0.00086 1.9E-08 68.0 11.6 104 226-347 2-112 (270)
178 COG0529 CysC Adenylylsulfate k 97.5 0.0007 1.5E-08 63.9 10.0 157 221-405 19-191 (197)
179 PRK13975 thymidylate kinase; P 97.5 0.0026 5.6E-08 60.6 14.1 139 15-161 34-192 (196)
180 PRK07429 phosphoribulokinase; 97.5 0.0012 2.7E-08 68.7 12.6 39 222-261 5-46 (327)
181 PRK09270 nucleoside triphospha 97.4 0.00073 1.6E-08 66.6 9.4 27 223-249 31-57 (229)
182 PRK08099 bifunctional DNA-bind 97.4 0.0026 5.6E-08 68.1 14.0 34 221-255 215-248 (399)
183 COG0572 Udk Uridine kinase [Nu 97.4 0.00069 1.5E-08 66.2 8.2 145 223-377 6-175 (218)
184 PRK06217 hypothetical protein; 97.3 0.0016 3.4E-08 61.8 10.0 138 11-159 24-179 (183)
185 COG3265 GntK Gluconate kinase 97.3 0.0057 1.2E-07 56.2 12.8 151 231-405 1-159 (161)
186 PF01745 IPT: Isopentenyl tran 97.3 0.00089 1.9E-08 65.1 8.1 113 226-345 2-128 (233)
187 PRK00698 tmk thymidylate kinas 97.3 0.011 2.5E-07 56.3 15.8 141 13-161 38-204 (205)
188 PLN02348 phosphoribulokinase 97.2 0.0015 3.3E-08 69.2 9.8 28 222-249 46-73 (395)
189 TIGR02881 spore_V_K stage V sp 97.2 0.0034 7.5E-08 63.0 11.5 25 224-248 41-65 (261)
190 PF00004 AAA: ATPase family as 97.2 0.00036 7.9E-09 61.3 3.9 34 228-262 1-36 (132)
191 TIGR00041 DTMP_kinase thymidyl 97.1 0.0072 1.6E-07 57.5 12.7 133 14-153 39-195 (195)
192 cd02026 PRK Phosphoribulokinas 97.1 0.0035 7.5E-08 63.7 10.9 36 227-262 1-38 (273)
193 cd00071 GMPK Guanosine monopho 97.0 0.002 4.4E-08 58.4 7.4 22 228-249 2-23 (137)
194 PF05729 NACHT: NACHT domain 96.9 0.0016 3.4E-08 59.4 5.5 23 227-249 2-24 (166)
195 PLN02165 adenylate isopentenyl 96.8 0.0013 2.8E-08 68.4 4.4 38 222-260 40-77 (334)
196 smart00382 AAA ATPases associa 96.8 0.0011 2.4E-08 57.4 3.5 25 225-249 2-26 (148)
197 PLN02924 thymidylate kinase 96.8 0.053 1.1E-06 53.4 15.6 137 12-162 50-206 (220)
198 PRK00091 miaA tRNA delta(2)-is 96.8 0.0014 3E-08 67.8 4.5 36 224-260 3-38 (307)
199 PLN02748 tRNA dimethylallyltra 96.8 0.0017 3.7E-08 70.5 5.3 41 221-262 18-60 (468)
200 PHA00729 NTP-binding motif con 96.7 0.0055 1.2E-07 60.5 8.2 24 226-249 18-41 (226)
201 cd02028 UMPK_like Uridine mono 96.7 0.0012 2.7E-08 62.6 3.5 36 227-262 1-40 (179)
202 COG1223 Predicted ATPase (AAA+ 96.7 0.0093 2E-07 59.7 9.5 32 225-257 151-182 (368)
203 cd00544 CobU Adenosylcobinamid 96.7 0.0027 5.8E-08 60.0 5.5 23 227-249 1-23 (169)
204 PF03668 ATP_bind_2: P-loop AT 96.6 0.048 1E-06 55.5 14.3 89 226-347 2-95 (284)
205 PF13401 AAA_22: AAA domain; P 96.6 0.0038 8.3E-08 55.0 5.6 97 225-332 4-113 (131)
206 PLN00020 ribulose bisphosphate 96.6 0.0032 6.8E-08 66.2 5.7 40 222-262 145-186 (413)
207 PRK15453 phosphoribulokinase; 96.6 0.0037 8E-08 63.6 5.8 40 223-262 3-46 (290)
208 PF13521 AAA_28: AAA domain; P 96.5 0.0018 3.8E-08 60.1 2.9 32 227-262 1-32 (163)
209 COG1618 Predicted nucleotide k 96.5 0.0019 4.1E-08 60.2 3.1 38 224-262 4-41 (179)
210 COG2074 2-phosphoglycerate kin 96.5 0.031 6.7E-07 55.8 11.6 41 222-263 86-126 (299)
211 KOG3308|consensus 96.5 0.0068 1.5E-07 58.4 6.6 39 224-262 3-41 (225)
212 PRK05439 pantothenate kinase; 96.5 0.0031 6.7E-08 65.2 4.6 41 222-262 83-129 (311)
213 PLN02840 tRNA dimethylallyltra 96.4 0.003 6.5E-08 67.6 4.4 36 223-259 19-54 (421)
214 KOG0738|consensus 96.4 0.018 4E-07 60.5 9.9 129 226-407 246-377 (491)
215 PTZ00322 6-phosphofructo-2-kin 96.4 0.0094 2E-07 67.9 8.4 32 224-256 214-245 (664)
216 PF00485 PRK: Phosphoribulokin 96.3 0.0029 6.2E-08 60.7 3.4 23 227-249 1-23 (194)
217 PHA02575 1 deoxynucleoside mon 96.3 0.0042 9.2E-08 61.0 4.5 35 227-263 2-37 (227)
218 TIGR00174 miaA tRNA isopenteny 96.3 0.0033 7.2E-08 64.3 3.6 32 227-259 1-32 (287)
219 COG0125 Tmk Thymidylate kinase 96.3 0.028 6.1E-07 54.9 9.8 142 11-161 36-205 (208)
220 PF07728 AAA_5: AAA domain (dy 96.3 0.0033 7.2E-08 56.5 3.2 27 228-255 2-28 (139)
221 PRK06761 hypothetical protein; 96.2 0.0037 8.1E-08 63.7 3.7 28 225-253 3-30 (282)
222 KOG0744|consensus 96.2 0.0032 7E-08 64.6 3.2 25 225-249 177-201 (423)
223 TIGR00390 hslU ATP-dependent p 96.2 0.0039 8.5E-08 66.6 3.9 35 224-259 46-80 (441)
224 PRK08118 topology modulation p 96.2 0.027 6E-07 52.8 9.0 71 12-99 25-96 (167)
225 KOG0739|consensus 96.0 0.069 1.5E-06 54.5 11.4 124 226-405 167-292 (439)
226 cd01672 TMPK Thymidine monopho 96.0 0.032 7E-07 52.5 8.7 139 14-158 36-199 (200)
227 CHL00181 cbbX CbbX; Provisiona 96.0 0.016 3.4E-07 59.3 6.9 39 224-262 58-104 (287)
228 KOG0736|consensus 96.0 0.025 5.5E-07 63.9 8.9 95 226-372 706-803 (953)
229 cd02025 PanK Pantothenate kina 96.0 0.0049 1.1E-07 60.6 2.9 36 227-262 1-42 (220)
230 PF05496 RuvB_N: Holliday junc 95.9 0.0083 1.8E-07 59.1 4.3 31 224-255 49-79 (233)
231 cd03115 SRP The signal recogni 95.9 0.063 1.4E-06 50.1 10.2 22 227-248 2-23 (173)
232 PLN02318 phosphoribulokinase/u 95.9 0.0069 1.5E-07 67.3 4.0 58 203-260 42-100 (656)
233 PRK05201 hslU ATP-dependent pr 95.9 0.0063 1.4E-07 65.2 3.6 35 224-259 49-83 (443)
234 smart00763 AAA_PrkA PrkA AAA d 95.9 0.0064 1.4E-07 63.9 3.5 25 225-249 78-102 (361)
235 TIGR00554 panK_bact pantothena 95.8 0.0075 1.6E-07 61.8 3.7 41 222-262 59-105 (290)
236 TIGR02640 gas_vesic_GvpN gas v 95.8 0.018 4E-07 58.0 6.2 28 227-255 23-50 (262)
237 PRK07933 thymidylate kinase; V 95.7 0.029 6.2E-07 54.9 7.3 137 18-157 42-211 (213)
238 PF08477 Miro: Miro-like prote 95.7 0.0089 1.9E-07 51.7 3.3 23 227-249 1-23 (119)
239 cd00009 AAA The AAA+ (ATPases 95.7 0.0091 2E-07 52.3 3.3 25 225-249 19-43 (151)
240 TIGR01618 phage_P_loop phage n 95.7 0.02 4.3E-07 56.4 5.9 35 222-259 9-43 (220)
241 PF00448 SRP54: SRP54-type pro 95.7 0.0077 1.7E-07 58.2 2.9 25 225-249 1-25 (196)
242 PF13245 AAA_19: Part of AAA d 95.6 0.011 2.5E-07 48.2 3.2 24 225-248 10-33 (76)
243 PF02223 Thymidylate_kin: Thym 95.5 0.064 1.4E-06 50.7 8.7 127 15-153 33-186 (186)
244 PRK00771 signal recognition pa 95.5 0.063 1.4E-06 58.2 9.6 27 223-249 93-119 (437)
245 PRK03992 proteasome-activating 95.5 0.011 2.5E-07 63.0 3.9 39 223-262 163-203 (389)
246 TIGR01650 PD_CobS cobaltochela 95.5 0.0098 2.1E-07 61.8 3.2 31 225-256 64-94 (327)
247 TIGR01526 nadR_NMN_Atrans nico 95.5 0.012 2.7E-07 61.2 3.8 31 224-255 161-191 (325)
248 PF03266 NTPase_1: NTPase; In 95.5 0.0091 2E-07 56.3 2.6 23 227-249 1-23 (168)
249 PF13173 AAA_14: AAA domain 95.5 0.015 3.3E-07 51.8 3.9 37 225-261 2-41 (128)
250 PF03029 ATP_bind_1: Conserved 95.4 0.0068 1.5E-07 60.4 1.7 20 230-249 1-20 (238)
251 KOG0733|consensus 95.4 0.017 3.7E-07 63.7 4.8 37 225-262 223-261 (802)
252 CHL00195 ycf46 Ycf46; Provisio 95.4 0.013 2.8E-07 64.3 4.0 39 223-262 257-297 (489)
253 TIGR02322 phosphon_PhnN phosph 95.4 0.19 4.1E-06 47.0 11.4 88 57-158 90-177 (179)
254 TIGR00150 HI0065_YjeE ATPase, 95.4 0.017 3.6E-07 52.5 3.9 29 224-253 21-49 (133)
255 PRK10751 molybdopterin-guanine 95.4 0.014 3E-07 55.4 3.5 27 223-249 4-30 (173)
256 smart00072 GuKc Guanylate kina 95.4 0.059 1.3E-06 51.1 7.8 116 22-159 57-182 (184)
257 PLN02796 D-glycerate 3-kinase 95.4 0.015 3.3E-07 60.7 4.1 40 223-262 98-141 (347)
258 COG1660 Predicted P-loop-conta 95.4 0.71 1.5E-05 46.5 15.4 143 226-405 2-157 (286)
259 PRK09087 hypothetical protein; 95.4 0.017 3.6E-07 57.1 4.1 37 225-262 44-80 (226)
260 PF00910 RNA_helicase: RNA hel 95.3 0.0096 2.1E-07 51.6 2.0 22 228-249 1-22 (107)
261 TIGR01242 26Sp45 26S proteasom 95.3 0.018 3.8E-07 60.8 4.3 38 224-262 155-194 (364)
262 TIGR02880 cbbX_cfxQ probable R 95.3 0.045 9.7E-07 55.9 7.1 37 226-262 59-103 (284)
263 PF10662 PduV-EutP: Ethanolami 95.3 0.013 2.8E-07 53.8 2.7 24 226-249 2-25 (143)
264 COG0324 MiaA tRNA delta(2)-iso 95.2 0.02 4.4E-07 58.9 4.4 37 224-261 2-38 (308)
265 KOG0733|consensus 95.2 0.018 3.9E-07 63.5 4.2 39 223-262 543-583 (802)
266 PTZ00454 26S protease regulato 95.2 0.019 4.1E-07 61.5 4.3 39 223-262 177-217 (398)
267 PRK14729 miaA tRNA delta(2)-is 95.2 0.023 5E-07 58.5 4.5 37 224-262 3-41 (300)
268 KOG0651|consensus 95.1 0.033 7.2E-07 57.1 5.5 56 221-283 162-219 (388)
269 PRK10078 ribose 1,5-bisphospho 95.1 0.36 7.8E-06 45.8 12.4 86 58-159 90-176 (186)
270 KOG0730|consensus 95.1 0.017 3.7E-07 64.2 3.5 39 223-262 466-506 (693)
271 PRK09183 transposase/IS protei 95.1 0.14 2.9E-06 51.7 9.7 38 225-262 102-143 (259)
272 PRK10867 signal recognition pa 95.0 0.14 3E-06 55.5 10.3 26 223-248 98-123 (433)
273 PRK06620 hypothetical protein; 95.0 0.025 5.4E-07 55.4 4.0 30 226-256 45-74 (214)
274 TIGR03420 DnaA_homol_Hda DnaA 94.9 0.021 4.6E-07 55.4 3.5 39 223-261 36-78 (226)
275 PRK12377 putative replication 94.9 0.12 2.7E-06 51.8 8.9 37 226-262 102-142 (248)
276 PRK06526 transposase; Provisio 94.9 0.06 1.3E-06 54.1 6.7 24 225-248 98-121 (254)
277 PRK14738 gmk guanylate kinase; 94.9 0.31 6.8E-06 47.2 11.4 89 59-161 105-196 (206)
278 COG3839 MalK ABC-type sugar tr 94.9 0.015 3.3E-07 60.6 2.3 113 223-346 27-163 (338)
279 KOG0734|consensus 94.9 0.33 7.2E-06 53.2 12.3 35 222-257 334-368 (752)
280 PF06745 KaiC: KaiC; InterPro 94.8 0.043 9.4E-07 53.6 5.3 36 223-258 17-57 (226)
281 PRK04195 replication factor C 94.8 0.028 6.1E-07 61.7 4.4 32 225-257 39-70 (482)
282 PF01926 MMR_HSR1: 50S ribosom 94.8 0.024 5.2E-07 49.2 3.1 22 227-248 1-22 (116)
283 PRK13949 shikimate kinase; Pro 94.8 0.52 1.1E-05 44.3 12.4 106 37-156 54-168 (169)
284 PRK12723 flagellar biosynthesi 94.8 0.059 1.3E-06 57.5 6.6 27 223-249 172-198 (388)
285 TIGR01241 FtsH_fam ATP-depende 94.8 0.026 5.6E-07 62.1 4.0 34 223-257 86-119 (495)
286 PF07724 AAA_2: AAA domain (Cd 94.8 0.029 6.3E-07 53.0 3.8 24 226-249 4-27 (171)
287 PRK03731 aroL shikimate kinase 94.8 0.25 5.4E-06 45.9 10.1 79 65-159 81-170 (171)
288 KOG0737|consensus 94.8 0.11 2.3E-06 54.6 8.1 128 223-405 125-254 (386)
289 KOG0635|consensus 94.8 0.053 1.1E-06 50.1 5.2 114 222-349 28-144 (207)
290 PLN03046 D-glycerate 3-kinase; 94.7 0.03 6.4E-07 60.0 4.1 40 223-262 210-253 (460)
291 TIGR03015 pepcterm_ATPase puta 94.7 0.026 5.7E-07 56.3 3.6 25 225-249 43-67 (269)
292 COG3709 Uncharacterized compon 94.7 0.76 1.7E-05 43.2 12.7 155 224-404 4-181 (192)
293 cd01120 RecA-like_NTPases RecA 94.7 0.022 4.7E-07 51.4 2.7 23 227-249 1-23 (165)
294 COG0464 SpoVK ATPases of the A 94.7 0.039 8.5E-07 60.6 5.2 39 223-262 274-314 (494)
295 COG1222 RPT1 ATP-dependent 26S 94.7 0.1 2.2E-06 54.5 7.8 39 223-262 183-223 (406)
296 TIGR02928 orc1/cdc6 family rep 94.7 0.079 1.7E-06 55.4 7.2 26 223-248 38-63 (365)
297 PRK00080 ruvB Holliday junctio 94.7 0.028 6.2E-07 58.3 3.8 30 224-254 50-79 (328)
298 PTZ00361 26 proteosome regulat 94.7 0.031 6.8E-07 60.5 4.2 32 223-255 215-246 (438)
299 TIGR00959 ffh signal recogniti 94.7 0.21 4.6E-06 54.0 10.4 26 223-248 97-122 (428)
300 TIGR00635 ruvB Holliday juncti 94.6 0.029 6.4E-07 57.3 3.8 29 224-253 29-57 (305)
301 PRK05342 clpX ATP-dependent pr 94.6 0.025 5.4E-07 60.8 3.3 31 226-257 109-139 (412)
302 TIGR03707 PPK2_P_aer polyphosp 94.6 0.66 1.4E-05 46.0 13.0 161 223-393 29-208 (230)
303 KOG0731|consensus 94.6 0.022 4.7E-07 64.9 2.9 52 209-262 329-382 (774)
304 PF03205 MobB: Molybdopterin g 94.6 0.024 5.1E-07 51.8 2.7 24 226-249 1-24 (140)
305 cd04163 Era Era subfamily. Er 94.6 0.028 6E-07 50.4 3.1 24 225-248 3-26 (168)
306 KOG3062|consensus 94.6 0.062 1.3E-06 52.8 5.6 24 226-249 2-25 (281)
307 PRK08181 transposase; Validate 94.6 0.17 3.7E-06 51.4 9.0 38 225-262 106-147 (269)
308 PF00931 NB-ARC: NB-ARC domain 94.6 0.12 2.7E-06 51.8 8.0 26 223-248 17-42 (287)
309 cd02029 PRK_like Phosphoribulo 94.6 0.02 4.3E-07 57.9 2.2 36 227-262 1-40 (277)
310 PRK10416 signal recognition pa 94.6 0.028 6.2E-07 58.4 3.4 27 223-249 112-138 (318)
311 COG1126 GlnQ ABC-type polar am 94.6 0.023 5.1E-07 55.5 2.6 36 222-261 25-60 (240)
312 TIGR00382 clpX endopeptidase C 94.5 0.032 6.9E-07 60.0 3.8 29 226-255 117-145 (413)
313 PHA02244 ATPase-like protein 94.5 0.028 6.1E-07 59.3 3.3 36 226-262 120-155 (383)
314 PF13191 AAA_16: AAA ATPase do 94.5 0.029 6.2E-07 52.3 3.0 28 222-249 21-48 (185)
315 COG0466 Lon ATP-dependent Lon 94.5 0.044 9.5E-07 61.7 4.9 41 222-262 347-388 (782)
316 TIGR00101 ureG urease accessor 94.5 0.033 7.1E-07 53.9 3.4 25 225-249 1-25 (199)
317 TIGR00064 ftsY signal recognit 94.5 0.03 6.6E-07 56.8 3.3 27 223-249 70-96 (272)
318 cd01918 HprK_C HprK/P, the bif 94.5 0.04 8.7E-07 51.0 3.8 32 225-258 14-45 (149)
319 PF02283 CobU: Cobinamide kina 94.5 0.071 1.5E-06 50.3 5.6 34 228-261 1-35 (167)
320 COG2256 MGS1 ATPase related to 94.4 0.036 7.7E-07 58.6 3.7 35 222-257 45-79 (436)
321 COG2087 CobU Adenosyl cobinami 94.4 0.11 2.5E-06 48.7 6.6 83 227-344 2-85 (175)
322 KOG1533|consensus 94.4 0.02 4.4E-07 56.4 1.7 20 228-247 5-24 (290)
323 PRK06645 DNA polymerase III su 94.3 0.18 3.9E-06 55.7 9.3 31 223-254 41-71 (507)
324 PRK14731 coaE dephospho-CoA ki 94.3 0.17 3.8E-06 49.1 8.2 89 58-161 115-204 (208)
325 COG3842 PotA ABC-type spermidi 94.3 0.026 5.6E-07 59.3 2.5 116 222-345 28-165 (352)
326 PF13189 Cytidylate_kin2: Cyti 94.3 0.053 1.2E-06 51.4 4.5 34 227-262 1-34 (179)
327 TIGR03709 PPK2_rel_1 polyphosp 94.3 0.7 1.5E-05 46.8 12.6 161 223-393 54-233 (264)
328 COG3911 Predicted ATPase [Gene 94.3 0.054 1.2E-06 50.0 4.1 30 224-255 8-37 (183)
329 PF01078 Mg_chelatase: Magnesi 94.3 0.039 8.5E-07 53.7 3.4 27 226-252 23-49 (206)
330 cd01131 PilT Pilus retraction 94.2 0.038 8.2E-07 53.3 3.1 23 227-249 3-25 (198)
331 PRK14974 cell division protein 94.2 0.037 7.9E-07 58.0 3.2 40 223-262 138-180 (336)
332 TIGR03708 poly_P_AMP_trns poly 94.2 0.65 1.4E-05 51.0 12.9 174 222-407 37-234 (493)
333 PRK09435 membrane ATPase/prote 94.1 0.039 8.4E-07 57.7 3.3 28 222-249 53-80 (332)
334 PRK14956 DNA polymerase III su 94.1 0.25 5.5E-06 54.0 9.5 29 224-253 39-67 (484)
335 PF08303 tRNA_lig_kinase: tRNA 94.0 0.036 7.8E-07 52.0 2.6 33 228-261 2-35 (168)
336 TIGR03689 pup_AAA proteasome A 94.0 0.039 8.4E-07 60.9 3.2 27 223-249 214-240 (512)
337 PRK13342 recombination factor 94.0 0.049 1.1E-06 58.5 4.0 32 224-256 35-66 (413)
338 cd04155 Arl3 Arl3 subfamily. 94.0 0.048 1E-06 50.2 3.4 25 224-248 13-37 (173)
339 PRK04040 adenylate kinase; Pro 94.0 0.63 1.4E-05 44.6 11.2 141 13-157 29-187 (188)
340 PRK08533 flagellar accessory p 94.0 0.1 2.2E-06 51.6 5.9 23 224-246 23-45 (230)
341 PRK13976 thymidylate kinase; P 94.0 2.3 5.1E-05 41.4 15.3 141 11-161 35-203 (209)
342 PF03215 Rad17: Rad17 cell cyc 93.9 0.056 1.2E-06 59.8 4.3 31 225-256 45-75 (519)
343 PRK04328 hypothetical protein; 93.9 0.12 2.6E-06 51.7 6.3 24 224-247 22-45 (249)
344 COG1127 Ttg2A ABC-type transpo 93.9 0.13 2.9E-06 51.1 6.3 121 221-344 30-173 (263)
345 PF01443 Viral_helicase1: Vira 93.9 0.036 7.9E-07 53.9 2.4 21 228-248 1-21 (234)
346 TIGR01243 CDC48 AAA family ATP 93.8 0.055 1.2E-06 62.5 4.2 39 223-262 485-525 (733)
347 PRK06921 hypothetical protein; 93.8 0.1 2.3E-06 52.8 5.7 38 225-262 117-159 (266)
348 COG1855 ATPase (PilT family) [ 93.8 0.037 8.1E-07 59.2 2.4 33 225-262 263-295 (604)
349 PRK11331 5-methylcytosine-spec 93.8 0.088 1.9E-06 57.0 5.3 25 225-249 194-218 (459)
350 TIGR00231 small_GTP small GTP- 93.8 0.054 1.2E-06 47.7 3.2 23 226-248 2-24 (161)
351 PRK15455 PrkA family serine pr 93.8 0.044 9.5E-07 60.9 3.1 25 225-249 103-127 (644)
352 PRK11889 flhF flagellar biosyn 93.8 0.12 2.6E-06 55.2 6.2 26 224-249 240-265 (436)
353 PF03976 PPK2: Polyphosphate k 93.8 0.16 3.5E-06 50.3 6.8 157 224-392 30-207 (228)
354 KOG1969|consensus 93.8 0.067 1.4E-06 60.3 4.4 36 221-257 322-357 (877)
355 CHL00176 ftsH cell division pr 93.7 0.062 1.3E-06 60.9 4.2 34 223-257 214-247 (638)
356 smart00173 RAS Ras subfamily o 93.7 0.055 1.2E-06 49.3 3.2 22 227-248 2-23 (164)
357 COG1116 TauB ABC-type nitrate/ 93.7 0.039 8.4E-07 55.0 2.3 37 222-262 26-62 (248)
358 PF00005 ABC_tran: ABC transpo 93.7 0.058 1.3E-06 48.0 3.1 26 224-249 10-35 (137)
359 PRK08903 DnaA regulatory inact 93.7 0.069 1.5E-06 52.2 4.0 38 225-262 42-83 (227)
360 PRK06893 DNA replication initi 93.6 0.054 1.2E-06 53.4 3.2 24 225-248 39-62 (229)
361 TIGR03499 FlhF flagellar biosy 93.6 0.052 1.1E-06 55.4 3.2 26 224-249 193-218 (282)
362 TIGR01425 SRP54_euk signal rec 93.6 0.054 1.2E-06 58.4 3.4 26 223-248 98-123 (429)
363 PRK08116 hypothetical protein; 93.6 0.14 3.1E-06 51.8 6.3 36 227-262 116-155 (268)
364 cd00820 PEPCK_HprK Phosphoenol 93.6 0.068 1.5E-06 46.7 3.4 36 224-262 14-49 (107)
365 cd01124 KaiC KaiC is a circadi 93.6 0.049 1.1E-06 51.1 2.7 20 228-247 2-21 (187)
366 cd04138 H_N_K_Ras_like H-Ras/N 93.6 0.06 1.3E-06 48.5 3.1 22 227-248 3-24 (162)
367 PRK12402 replication factor C 93.6 0.059 1.3E-06 55.6 3.4 36 226-261 37-78 (337)
368 cd00876 Ras Ras family. The R 93.5 0.052 1.1E-06 48.8 2.7 22 227-248 1-22 (160)
369 cd01130 VirB11-like_ATPase Typ 93.5 0.066 1.4E-06 50.9 3.4 26 224-249 24-49 (186)
370 smart00175 RAB Rab subfamily o 93.5 0.062 1.3E-06 48.7 3.1 22 227-248 2-23 (164)
371 PF13479 AAA_24: AAA domain 93.5 0.065 1.4E-06 52.2 3.4 31 224-258 2-32 (213)
372 PF07726 AAA_3: ATPase family 93.4 0.046 1E-06 49.3 2.1 26 228-254 2-27 (131)
373 PF01695 IstB_IS21: IstB-like 93.4 0.1 2.2E-06 49.6 4.6 38 224-262 46-88 (178)
374 PF04665 Pox_A32: Poxvirus A32 93.4 0.068 1.5E-06 53.3 3.5 26 223-248 11-36 (241)
375 cd04119 RJL RJL (RabJ-Like) su 93.4 0.066 1.4E-06 48.5 3.1 22 227-248 2-23 (168)
376 PF02367 UPF0079: Uncharacteri 93.4 0.089 1.9E-06 47.1 3.8 30 223-253 13-42 (123)
377 PRK06067 flagellar accessory p 93.3 0.17 3.7E-06 49.8 6.2 25 223-247 23-47 (234)
378 PF06068 TIP49: TIP49 C-termin 93.3 0.067 1.4E-06 56.3 3.3 38 224-262 49-90 (398)
379 COG0378 HypB Ni2+-binding GTPa 93.3 0.061 1.3E-06 51.8 2.8 38 223-262 10-52 (202)
380 PRK14490 putative bifunctional 93.3 0.068 1.5E-06 56.6 3.5 27 223-249 3-29 (369)
381 TIGR00750 lao LAO/AO transport 93.3 0.07 1.5E-06 54.9 3.5 27 222-248 31-57 (300)
382 cd00154 Rab Rab family. Rab G 93.3 0.07 1.5E-06 47.4 3.1 22 227-248 2-23 (159)
383 PRK00411 cdc6 cell division co 93.3 0.21 4.5E-06 52.9 7.2 26 223-248 53-78 (394)
384 TIGR00763 lon ATP-dependent pr 93.3 0.074 1.6E-06 61.8 4.0 35 224-259 346-382 (775)
385 TIGR01243 CDC48 AAA family ATP 93.3 0.077 1.7E-06 61.3 4.1 39 223-262 210-250 (733)
386 TIGR02237 recomb_radB DNA repa 93.3 0.079 1.7E-06 51.0 3.6 25 223-247 10-34 (209)
387 PTZ00202 tuzin; Provisional 93.3 0.4 8.7E-06 51.9 9.0 31 222-253 283-313 (550)
388 PRK13695 putative NTPase; Prov 93.2 0.073 1.6E-06 49.9 3.2 22 227-248 2-23 (174)
389 TIGR02655 circ_KaiC circadian 93.2 0.15 3.3E-06 56.0 6.1 26 223-248 261-286 (484)
390 cd04136 Rap_like Rap-like subf 93.2 0.074 1.6E-06 48.2 3.1 23 226-248 2-24 (163)
391 PF06309 Torsin: Torsin; Inte 93.2 0.096 2.1E-06 47.1 3.7 29 221-249 49-77 (127)
392 cd04113 Rab4 Rab4 subfamily. 93.2 0.075 1.6E-06 48.3 3.1 22 227-248 2-23 (161)
393 cd00984 DnaB_C DnaB helicase C 93.2 0.75 1.6E-05 45.1 10.4 35 224-258 12-51 (242)
394 TIGR03574 selen_PSTK L-seryl-t 93.1 1.2 2.5E-05 44.3 11.9 95 58-159 69-169 (249)
395 KOG1532|consensus 93.1 0.08 1.7E-06 53.5 3.4 42 221-262 15-60 (366)
396 PRK08084 DNA replication initi 93.1 0.082 1.8E-06 52.4 3.5 25 225-249 45-69 (235)
397 cd03292 ABC_FtsE_transporter F 93.1 0.08 1.7E-06 51.1 3.4 27 223-249 25-51 (214)
398 TIGR00176 mobB molybdopterin-g 93.1 0.061 1.3E-06 50.0 2.4 23 227-249 1-23 (155)
399 cd03116 MobB Molybdenum is an 93.1 0.072 1.6E-06 49.8 2.9 24 226-249 2-25 (159)
400 cd01862 Rab7 Rab7 subfamily. 93.1 0.076 1.6E-06 48.6 3.0 22 227-248 2-23 (172)
401 TIGR01166 cbiO cobalt transpor 93.1 0.083 1.8E-06 50.1 3.4 26 223-248 16-41 (190)
402 PLN03025 replication factor C 93.1 0.075 1.6E-06 55.0 3.3 24 226-249 35-58 (319)
403 PRK10787 DNA-binding ATP-depen 93.1 0.083 1.8E-06 61.3 4.0 36 223-259 347-384 (784)
404 cd01394 radB RadB. The archaea 93.1 0.089 1.9E-06 51.0 3.6 26 223-248 17-42 (218)
405 PRK13768 GTPase; Provisional 93.0 0.07 1.5E-06 53.6 2.9 25 225-249 2-26 (253)
406 COG4240 Predicted kinase [Gene 93.0 0.11 2.5E-06 51.1 4.2 40 223-262 48-92 (300)
407 TIGR00073 hypB hydrogenase acc 93.0 0.088 1.9E-06 50.9 3.5 28 222-249 19-46 (207)
408 cd03255 ABC_MJ0796_Lo1CDE_FtsE 93.0 0.085 1.8E-06 51.1 3.4 27 223-249 28-54 (218)
409 KOG0735|consensus 93.0 0.11 2.4E-06 58.4 4.6 39 223-262 699-739 (952)
410 PRK14722 flhF flagellar biosyn 93.0 0.074 1.6E-06 56.4 3.1 25 224-248 136-160 (374)
411 PHA02544 44 clamp loader, smal 92.9 0.099 2.2E-06 53.6 4.0 29 223-252 41-69 (316)
412 TIGR02655 circ_KaiC circadian 92.9 0.2 4.3E-06 55.1 6.5 35 224-258 20-59 (484)
413 COG1120 FepC ABC-type cobalami 92.9 0.087 1.9E-06 53.1 3.4 28 221-248 24-51 (258)
414 PRK08939 primosomal protein Dn 92.9 0.37 8.1E-06 49.8 8.1 38 225-262 156-197 (306)
415 COG1224 TIP49 DNA helicase TIP 92.9 0.071 1.5E-06 55.7 2.7 38 224-262 64-105 (450)
416 PRK14962 DNA polymerase III su 92.9 0.097 2.1E-06 57.3 4.0 28 224-252 35-62 (472)
417 cd01895 EngA2 EngA2 subfamily. 92.9 0.09 2E-06 47.6 3.2 24 225-248 2-25 (174)
418 TIGR00960 3a0501s02 Type II (G 92.9 0.09 2E-06 50.9 3.4 27 223-249 27-53 (216)
419 KOG1534|consensus 92.8 0.07 1.5E-06 52.0 2.4 46 365-410 208-253 (273)
420 cd00157 Rho Rho (Ras homology) 92.8 0.09 1.9E-06 48.1 3.1 22 227-248 2-23 (171)
421 PRK10463 hydrogenase nickel in 92.8 0.097 2.1E-06 53.6 3.6 28 222-249 101-128 (290)
422 CHL00206 ycf2 Ycf2; Provisiona 92.8 0.1 2.2E-06 64.7 4.2 40 222-262 1627-1668(2281)
423 COG1219 ClpX ATP-dependent pro 92.8 0.088 1.9E-06 54.3 3.2 28 227-255 99-126 (408)
424 COG1136 SalX ABC-type antimicr 92.8 0.096 2.1E-06 51.7 3.4 26 222-247 28-53 (226)
425 cd03301 ABC_MalK_N The N-termi 92.8 0.097 2.1E-06 50.5 3.4 27 223-249 24-50 (213)
426 cd04139 RalA_RalB RalA/RalB su 92.8 0.091 2E-06 47.5 3.1 22 227-248 2-23 (164)
427 COG5192 BMS1 GTP-binding prote 92.8 0.097 2.1E-06 57.2 3.6 27 223-249 67-93 (1077)
428 TIGR02673 FtsE cell division A 92.7 0.097 2.1E-06 50.6 3.4 27 223-249 26-52 (214)
429 PRK12323 DNA polymerase III su 92.7 0.66 1.4E-05 52.6 10.2 29 223-252 36-64 (700)
430 cd03112 CobW_like The function 92.7 0.11 2.5E-06 48.1 3.7 24 226-249 1-24 (158)
431 PRK13541 cytochrome c biogenes 92.7 0.1 2.2E-06 49.9 3.4 26 223-248 24-49 (195)
432 cd01860 Rab5_related Rab5-rela 92.7 0.095 2.1E-06 47.6 3.1 23 226-248 2-24 (163)
433 cd03219 ABC_Mj1267_LivG_branch 92.7 0.093 2E-06 51.5 3.2 27 222-248 23-49 (236)
434 PF13555 AAA_29: P-loop contai 92.7 0.12 2.6E-06 40.7 3.1 23 226-248 24-46 (62)
435 COG1484 DnaC DNA replication p 92.7 0.31 6.8E-06 49.0 7.0 39 224-262 104-146 (254)
436 cd01983 Fer4_NifH The Fer4_Nif 92.7 0.082 1.8E-06 43.1 2.4 23 227-249 1-23 (99)
437 TIGR03608 L_ocin_972_ABC putat 92.6 0.1 2.2E-06 50.1 3.3 27 223-249 22-48 (206)
438 cd03262 ABC_HisP_GlnQ_permease 92.6 0.1 2.3E-06 50.2 3.4 26 223-248 24-49 (213)
439 PF08298 AAA_PrkA: PrkA AAA do 92.6 0.09 1.9E-06 55.1 3.1 26 224-249 87-112 (358)
440 cd03269 ABC_putative_ATPase Th 92.6 0.1 2.3E-06 50.2 3.4 26 223-248 24-49 (210)
441 COG1122 CbiO ABC-type cobalt t 92.6 0.099 2.1E-06 52.0 3.2 26 222-247 27-52 (235)
442 cd03225 ABC_cobalt_CbiO_domain 92.6 0.11 2.3E-06 50.2 3.4 26 223-248 25-50 (211)
443 cd03260 ABC_PstB_phosphate_tra 92.6 0.11 2.3E-06 50.8 3.5 28 222-249 23-50 (227)
444 cd03263 ABC_subfamily_A The AB 92.6 0.11 2.3E-06 50.5 3.4 26 223-248 26-51 (220)
445 TIGR02211 LolD_lipo_ex lipopro 92.6 0.11 2.3E-06 50.5 3.4 28 222-249 28-55 (221)
446 cd03261 ABC_Org_Solvent_Resist 92.6 0.11 2.3E-06 51.2 3.4 28 222-249 23-50 (235)
447 PRK11629 lolD lipoprotein tran 92.5 0.11 2.3E-06 51.1 3.4 27 223-249 33-59 (233)
448 cd03224 ABC_TM1139_LivF_branch 92.5 0.11 2.3E-06 50.5 3.4 27 222-248 23-49 (222)
449 PF00025 Arf: ADP-ribosylation 92.5 0.11 2.4E-06 48.8 3.3 26 223-248 12-37 (175)
450 cd03247 ABCC_cytochrome_bd The 92.5 0.11 2.5E-06 48.8 3.4 27 222-248 25-51 (178)
451 KOG2004|consensus 92.5 0.099 2.2E-06 58.9 3.4 41 222-262 435-476 (906)
452 cd03296 ABC_CysA_sulfate_impor 92.5 0.11 2.4E-06 51.3 3.4 26 223-248 26-51 (239)
453 COG1220 HslU ATP-dependent pro 92.5 0.11 2.4E-06 53.9 3.4 34 223-257 48-81 (444)
454 cd04123 Rab21 Rab21 subfamily. 92.4 0.11 2.4E-06 46.8 3.1 22 227-248 2-23 (162)
455 cd03259 ABC_Carb_Solutes_like 92.4 0.11 2.5E-06 50.1 3.4 27 222-248 23-49 (213)
456 PRK14250 phosphate ABC transpo 92.4 0.11 2.4E-06 51.4 3.4 27 223-249 27-53 (241)
457 cd03257 ABC_NikE_OppD_transpor 92.4 0.11 2.4E-06 50.6 3.3 28 222-249 28-55 (228)
458 PRK07003 DNA polymerase III su 92.4 0.51 1.1E-05 54.2 8.9 29 224-253 37-65 (830)
459 COG4619 ABC-type uncharacteriz 92.4 0.12 2.5E-06 49.0 3.2 36 223-262 27-62 (223)
460 PF00071 Ras: Ras family; Int 92.4 0.11 2.5E-06 47.0 3.2 22 227-248 1-22 (162)
461 cd03235 ABC_Metallic_Cations A 92.4 0.11 2.3E-06 50.3 3.2 26 223-248 23-48 (213)
462 cd03226 ABC_cobalt_CbiO_domain 92.4 0.11 2.5E-06 49.8 3.3 26 223-248 24-49 (205)
463 cd03223 ABCD_peroxisomal_ALDP 92.4 0.12 2.7E-06 48.2 3.4 27 222-248 24-50 (166)
464 TIGR02315 ABC_phnC phosphonate 92.4 0.12 2.5E-06 51.1 3.4 27 222-248 25-51 (243)
465 TIGR02323 CP_lyasePhnK phospho 92.3 0.11 2.4E-06 51.6 3.3 28 222-249 26-53 (253)
466 TIGR03797 NHPM_micro_ABC2 NHPM 92.3 0.54 1.2E-05 53.8 9.3 120 221-343 475-615 (686)
467 cd01867 Rab8_Rab10_Rab13_like 92.3 0.12 2.7E-06 47.4 3.4 24 225-248 3-26 (167)
468 COG2255 RuvB Holliday junction 92.3 0.12 2.5E-06 52.7 3.3 37 225-262 52-89 (332)
469 cd03218 ABC_YhbG The ABC trans 92.3 0.12 2.6E-06 50.6 3.4 26 223-248 24-49 (232)
470 cd01861 Rab6 Rab6 subfamily. 92.3 0.11 2.5E-06 46.9 3.1 22 227-248 2-23 (161)
471 cd00879 Sar1 Sar1 subfamily. 92.3 0.12 2.7E-06 48.5 3.4 25 224-248 18-42 (190)
472 TIGR03864 PQQ_ABC_ATP ABC tran 92.3 0.12 2.6E-06 50.9 3.4 28 222-249 24-51 (236)
473 cd03265 ABC_DrrA DrrA is the A 92.3 0.12 2.7E-06 50.2 3.5 26 223-248 24-49 (220)
474 PRK04296 thymidine kinase; Pro 92.3 0.099 2.2E-06 50.1 2.7 24 226-249 3-26 (190)
475 cd03229 ABC_Class3 This class 92.3 0.13 2.8E-06 48.5 3.4 26 223-248 24-49 (178)
476 cd03258 ABC_MetN_methionine_tr 92.3 0.12 2.6E-06 50.6 3.4 28 222-249 28-55 (233)
477 cd03264 ABC_drug_resistance_li 92.3 0.1 2.2E-06 50.4 2.8 23 225-248 26-48 (211)
478 cd03256 ABC_PhnC_transporter A 92.3 0.12 2.6E-06 50.8 3.4 27 222-248 24-50 (241)
479 PRK10247 putative ABC transpor 92.2 0.12 2.7E-06 50.5 3.4 27 222-248 30-56 (225)
480 PRK13540 cytochrome c biogenes 92.2 0.13 2.8E-06 49.4 3.4 27 222-248 24-50 (200)
481 COG1100 GTPase SAR1 and relate 92.2 0.11 2.4E-06 49.9 3.0 24 226-249 6-29 (219)
482 cd03222 ABC_RNaseL_inhibitor T 92.2 0.12 2.6E-06 49.1 3.2 26 223-248 23-48 (177)
483 cd04159 Arl10_like Arl10-like 92.2 0.1 2.2E-06 46.4 2.6 21 228-248 2-22 (159)
484 TIGR02770 nickel_nikD nickel i 92.2 0.12 2.7E-06 50.6 3.3 27 223-249 10-36 (230)
485 TIGR01978 sufC FeS assembly AT 92.2 0.12 2.7E-06 50.8 3.4 27 222-248 23-49 (243)
486 cd03114 ArgK-like The function 92.2 0.092 2E-06 48.3 2.3 23 227-249 1-23 (148)
487 cd04164 trmE TrmE (MnmE, ThdF, 92.2 0.12 2.7E-06 46.0 3.1 23 226-248 2-24 (157)
488 cd04137 RheB Rheb (Ras Homolog 92.2 0.12 2.7E-06 47.9 3.2 23 226-248 2-24 (180)
489 PRK11264 putative amino-acid A 92.2 0.13 2.7E-06 51.1 3.4 27 223-249 27-53 (250)
490 cd04154 Arl2 Arl2 subfamily. 92.1 0.13 2.8E-06 47.7 3.3 25 224-248 13-37 (173)
491 PF00437 T2SE: Type II/IV secr 92.1 0.12 2.7E-06 51.9 3.4 29 224-252 126-154 (270)
492 PRK14242 phosphate transporter 92.1 0.12 2.7E-06 51.3 3.3 27 222-248 29-55 (253)
493 cd01123 Rad51_DMC1_radA Rad51_ 92.1 0.13 2.8E-06 50.3 3.5 25 223-247 17-41 (235)
494 cd03214 ABC_Iron-Siderophores_ 92.1 0.13 2.9E-06 48.4 3.4 27 222-248 22-48 (180)
495 TIGR03878 thermo_KaiC_2 KaiC d 92.1 0.12 2.5E-06 52.1 3.2 25 223-247 34-58 (259)
496 cd03293 ABC_NrtD_SsuB_transpor 92.1 0.12 2.6E-06 50.2 3.2 26 223-248 28-53 (220)
497 cd03283 ABC_MutS-like MutS-lik 92.1 0.12 2.6E-06 50.0 3.1 23 225-247 25-47 (199)
498 cd04160 Arfrp1 Arfrp1 subfamil 92.1 0.11 2.3E-06 47.5 2.7 23 227-249 1-23 (167)
499 cd03251 ABCC_MsbA MsbA is an e 92.1 0.13 2.8E-06 50.4 3.4 27 223-249 26-52 (234)
500 TIGR03771 anch_rpt_ABC anchore 92.1 0.13 2.8E-06 50.3 3.4 26 224-249 5-30 (223)
No 1
>KOG3079|consensus
Probab=100.00 E-value=9.7e-40 Score=302.89 Aligned_cols=179 Identities=28% Similarity=0.595 Sum_probs=165.8
Q ss_pred CCCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhccccc-CCcchHHHHhhhhcCCccchHHHHHHHHH
Q psy11031 221 ERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDD-GEGLNSRIKSSVSAGDFVNRDVVLDIVYA 299 (520)
Q Consensus 221 ~~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~-~t~~g~~i~~~l~~G~~vPd~lv~~ll~~ 299 (520)
....+++|||+|+|||||+|||.+|+++| ||.|+|+||||| ++.+. +++.|.+|++++.+|.+||.+++..||++
T Consensus 4 ~~~~~~IifVlGGPGsgKgTqC~kiv~ky-~ftHlSaGdLLR---~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~ 79 (195)
T KOG3079|consen 4 KLDKPPIIFVLGGPGSGKGTQCEKIVEKY-GFTHLSAGDLLR---AEIASAGSERGALIKEIIKNGDLVPVEITLSLLEE 79 (195)
T ss_pred cccCCCEEEEEcCCCCCcchHHHHHHHHc-CceeecHHHHHH---HHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHH
Confidence 45679999999999999999999999999 999999999999 77776 99999999999999999999999999999
Q ss_pred HHhccccCCCcEEEEeCCCCCHHHHHHHHhhcC-CCCCEEEecCChhhh-------hc--cCCCCCHHHHHHHHHHHHHH
Q psy11031 300 EMKKTKYTEADGIVIDGFPREMSQLIDFENKYQ-IHPPMILIDCSKLVL-------HK--GQIDNSVSAFRRRLELFRER 369 (520)
Q Consensus 300 ~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~-~p~~VI~Ld~~~~~~-------~r--~R~dD~~e~~~~Rl~~f~~~ 369 (520)
+|. .....+||+||||||+.+|+..|++.+. .+..|+|+||+.+.. ++ +|.||+.+++++|++.|++.
T Consensus 80 am~--~~~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~~R~DDn~esikkR~et~~~~ 157 (195)
T KOG3079|consen 80 AMR--SSGDSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQSNSRSDDNEESIKKRLETYNKS 157 (195)
T ss_pred HHH--hcCCCCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHc
Confidence 999 5566678999999999999999999998 577899999999752 22 38999999999999999999
Q ss_pred hHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031 370 TLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK 405 (520)
Q Consensus 370 ~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~ 405 (520)
+.|+++||+.+++++.|||+.++++||.++...|..
T Consensus 158 t~Pvi~~~e~kg~l~~i~a~~~~d~Vf~~v~~~id~ 193 (195)
T KOG3079|consen 158 TLPVIEYYEKKGKLLKINAERSVDDVFEEVVTAIDA 193 (195)
T ss_pred chHHHHHHHccCcEEEecCCCCHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999988764
No 2
>PLN02674 adenylate kinase
Probab=100.00 E-value=7.2e-36 Score=295.07 Aligned_cols=175 Identities=21% Similarity=0.396 Sum_probs=160.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMK 302 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~ 302 (520)
..+++|+|+|||||||||||++|+++| |+.|||+|+++| ++++.++++|..+++++.+|++||++++..++.++|.
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~-~~~his~GdllR---~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~ 104 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEY-CLCHLATGDMLR---AAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMK 104 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHc-CCcEEchhHHHH---HHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHh
Confidence 346789999999999999999999998 999999999999 8888999999999999999999999999999999999
Q ss_pred ccccCCCcEEEEeCCCCCHHHHHHHHhhc----CCCCCEEEecCChhhh-----hc------------------------
Q psy11031 303 KTKYTEADGIVIDGFPREMSQLIDFENKY----QIHPPMILIDCSKLVL-----HK------------------------ 349 (520)
Q Consensus 303 ~~~~~~~~G~ILDGFPrt~~Qae~l~~~~----~~p~~VI~Ld~~~~~~-----~r------------------------ 349 (520)
..++.+||||||||||..||+.|++.+ ..++.||+|+|+++.+ +|
T Consensus 105 --~~~~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~~~g~~yn~~~~pp~~~~~~~ 182 (244)
T PLN02674 105 --KPSCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKVPGVDD 182 (244)
T ss_pred --CcCcCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccccccccCCccccccCCCcccCccc
Confidence 667889999999999999999998764 3567799999998642 11
Q ss_pred -------cCCCCCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHH
Q psy11031 350 -------GQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVL 403 (520)
Q Consensus 350 -------~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I 403 (520)
+|.||+++.+++|++.|++++.|+++||.+++.++.|||++++++|+++|+..|
T Consensus 183 ~~g~~L~~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~~eV~~~i~~~l 243 (244)
T PLN02674 183 VTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVTAEVQKAL 243 (244)
T ss_pred ccCCccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 378999999999999999999999999999999999999999999999998765
No 3
>PLN02459 probable adenylate kinase
Probab=100.00 E-value=2.4e-34 Score=285.67 Aligned_cols=183 Identities=17% Similarity=0.294 Sum_probs=162.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMK 302 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~ 302 (520)
.++.+|+|+|+|||||||||++|+++| |+.|||+|+++| ++++.++++|..++.++.+|.+||++++..+|.++|.
T Consensus 27 ~~~~~ii~~G~PGsGK~T~a~~la~~~-~~~~is~gdllR---~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~ 102 (261)
T PLN02459 27 GRNVNWVFLGCPGVGKGTYASRLSKLL-GVPHIATGDLVR---EEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLE 102 (261)
T ss_pred cCccEEEEECCCCCCHHHHHHHHHHHh-CCcEEeCcHHHH---HHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHh
Confidence 355679999999999999999999998 999999999999 8888899999999999999999999999999999998
Q ss_pred ccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhh-----hc----------------------------
Q psy11031 303 KTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVL-----HK---------------------------- 349 (520)
Q Consensus 303 ~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~-----~r---------------------------- 349 (520)
+....+.+||||||||||..||+.|+... .++.||+|+|+++.+ +|
T Consensus 103 ~~~~~~~~g~iLDGFPRt~~Qa~~Le~~~-~id~Vi~L~v~d~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~~~~~~~~~~~ 181 (261)
T PLN02459 103 AGEEEGESGFILDGFPRTVRQAEILEGVT-DIDLVVNLKLREEVLVEKCLGRRICSECGKNFNVADIDLKGEDGRPGIVM 181 (261)
T ss_pred cccccCCceEEEeCCCCCHHHHHHHHhcC-CCCEEEEEECCHHHHHHHhhccccccccCccccccccccccccccccccC
Confidence 21123579999999999999999999764 467899999998642 11
Q ss_pred --------------cCCCCCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH
Q psy11031 350 --------------GQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDDL 410 (520)
Q Consensus 350 --------------~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~~~ 410 (520)
+|.||+++.+++|++.|++++.|+++||..++.++.|||++++++|+++|...|...-+++
T Consensus 182 ~p~~~~~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~~~~~eV~~~i~~~l~~~~~~~ 256 (261)
T PLN02459 182 PPLLPPPECASKLITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEFELPGGIPETWPRLLQALNLDDEDK 256 (261)
T ss_pred CCCCCCcccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHhchhhhhh
Confidence 5889999999999999999999999999999999999999999999999999886654443
No 4
>PRK14529 adenylate kinase; Provisional
Probab=100.00 E-value=3.8e-33 Score=272.64 Aligned_cols=170 Identities=22% Similarity=0.371 Sum_probs=152.6
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcccc
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKY 306 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~~ 306 (520)
+|+|+|+|||||||||++|+++| ++.|+|+|+++| ++...++++|+.+++++.+|.++|++++.+++.++|. ..
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~-~~~~is~gdllr---~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~--~~ 75 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKY-DLAHIESGAIFR---EHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLK--QD 75 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-CCCCcccchhhh---hhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHh--cc
Confidence 59999999999999999999998 999999999999 7788899999999999999999999999999999999 55
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHhhc----CCCCCEEEecCChhhh-----hc----------------------------
Q psy11031 307 TEADGIVIDGFPREMSQLIDFENKY----QIHPPMILIDCSKLVL-----HK---------------------------- 349 (520)
Q Consensus 307 ~~~~G~ILDGFPrt~~Qae~l~~~~----~~p~~VI~Ld~~~~~~-----~r---------------------------- 349 (520)
+ .+||||||||||.+||+.|++.+ ..++.||+|+|+++.+ +|
T Consensus 76 ~-~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c~~~~~~~~~~~~~~p~~~~~~cd~~ 154 (223)
T PRK14529 76 G-KNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLCKNDNNHPNNIFIDAIKPDGDVCRVC 154 (223)
T ss_pred C-CCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCccccccCCcccccccCCCcccCCcCcCc
Confidence 5 89999999999999999998653 3467799999998642 11
Q ss_pred -----cCCCCC-HHHHHHHHHHHHHH---hHHHHHHhhh-----CCCEEEEECCCCHHHHHHHHHHHH
Q psy11031 350 -----GQIDNS-VSAFRRRLELFRER---TLPMLRAMDV-----ETRLTIVDGDTQLPQVREEFERVL 403 (520)
Q Consensus 350 -----~R~dD~-~e~~~~Rl~~f~~~---~~~l~~~y~~-----~~~l~~IDa~~~~e~V~~~I~~~I 403 (520)
+|.||+ +|.+++|++.|+++ ..++++||.+ ++.++.|||++++++|+++|...|
T Consensus 155 ~~~l~~R~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~~~V~~~i~~~l 222 (223)
T PRK14529 155 GGELSTRADDQDEEAINKRHDIYYDTETGTLAAAYFFKDLAAKGSTKYIELDGEGSIDEIKETLLKQL 222 (223)
T ss_pred CCccccCCCCCcHHHHHHHHHHHHHcccccchHHHHHhhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 488896 78999999999998 5588999986 688999999999999999998765
No 5
>PRK13808 adenylate kinase; Provisional
Probab=100.00 E-value=5.7e-33 Score=284.60 Aligned_cols=176 Identities=24% Similarity=0.451 Sum_probs=161.4
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcccc
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKY 306 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~~ 306 (520)
+|+|+|||||||||||++|+++| |+.|||+|+||| +++..+++.|..+.++|.+|.++|++++..+|.++|. +.
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~y-gl~~is~gdlLR---~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~--~~ 75 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQY-GIVQLSTGDMLR---AAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIE--QP 75 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCceecccHHHH---HHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHh--cc
Confidence 69999999999999999999998 999999999999 8888899999999999999999999999999999999 67
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHhhcC----CCCCEEEecCChhhh-----hc----------cCCCCCHHHHHHHHHHHH
Q psy11031 307 TEADGIVIDGFPREMSQLIDFENKYQ----IHPPMILIDCSKLVL-----HK----------GQIDNSVSAFRRRLELFR 367 (520)
Q Consensus 307 ~~~~G~ILDGFPrt~~Qae~l~~~~~----~p~~VI~Ld~~~~~~-----~r----------~R~dD~~e~~~~Rl~~f~ 367 (520)
++.+|||||||||+.+|++.|+..+. .|+.||+|+|+++.+ .| .|.||+++.|++|+..|+
T Consensus 76 ~~~~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~~~R~DD~~E~i~kRL~~Y~ 155 (333)
T PRK13808 76 DAANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARGEEVRADDTPEVLAKRLASYR 155 (333)
T ss_pred cccCCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCCccCCCCCHHHHHHHHHHHH
Confidence 77899999999999999999987643 578899999999753 12 367899999999999999
Q ss_pred HHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHH
Q psy11031 368 ERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIID 408 (520)
Q Consensus 368 ~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~ 408 (520)
+++.|+++||.+.+.++.|||++++++|+++|+..|...+.
T Consensus 156 ~~t~PLl~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~~~~~ 196 (333)
T PRK13808 156 AQTEPLVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAAVGA 196 (333)
T ss_pred HHhHHHHHHhhccCcEEEEECCCCHHHHHHHHHHHHHHHhC
Confidence 99999999999888899999999999999999999987553
No 6
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=100.00 E-value=1.8e-32 Score=266.25 Aligned_cols=171 Identities=25% Similarity=0.461 Sum_probs=157.3
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcccc
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKY 306 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~~ 306 (520)
+|+|+|+|||||||+|++|+++| |+.|||+|+++| ++...+++.|..+++++.+|.++|++++.+++.++|. ..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~~~-g~~~is~gdllr---~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~--~~ 74 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAEKY-GLPHISTGDLLR---AEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLT--QN 74 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc-CCCeeehhHHHH---HhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC
Confidence 48999999999999999999998 999999999999 7778889999999999999999999999999999998 43
Q ss_pred -CCCcEEEEeCCCCCHHHHHHHHhhcC-CCCCEEEecCChhhh-----hc------------------------------
Q psy11031 307 -TEADGIVIDGFPREMSQLIDFENKYQ-IHPPMILIDCSKLVL-----HK------------------------------ 349 (520)
Q Consensus 307 -~~~~G~ILDGFPrt~~Qae~l~~~~~-~p~~VI~Ld~~~~~~-----~r------------------------------ 349 (520)
...+|||||||||+..||+.|++.+. .++.||+|+||++.+ +|
T Consensus 75 ~~~~~~~ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~~~l 154 (210)
T TIGR01351 75 QDNENGFILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELL 154 (210)
T ss_pred cccCCcEEEeCCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCCccCCcCCccccccCCCccCCcCcccCCcc
Confidence 34789999999999999999999887 688899999999752 12
Q ss_pred -cCCCCCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHH
Q psy11031 350 -GQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVL 403 (520)
Q Consensus 350 -~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I 403 (520)
+|.||+++.+++|++.|++++.++++||...+.++.|||++++++|++.|.+.|
T Consensus 155 ~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 209 (210)
T TIGR01351 155 IQREDDTEEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRILEAL 209 (210)
T ss_pred ccCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhh
Confidence 378899999999999999999999999999899999999999999999999876
No 7
>PRK14528 adenylate kinase; Provisional
Probab=100.00 E-value=2.2e-32 Score=261.12 Aligned_cols=171 Identities=23% Similarity=0.422 Sum_probs=157.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhccc
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTK 305 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~ 305 (520)
++|+|+|+|||||||+|+.|+++| |+.|+|+|+++| .+...++++|..++.++.+|+++|++++..++.+++. .
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~-~~~~is~~~~lr---~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~--~ 75 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL-SIPQISTGDILR---EAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIR--E 75 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh-CCCeeeCCHHHH---HHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHh--C
Confidence 469999999999999999999998 999999999999 7778889999999999999999999999999999999 6
Q ss_pred cCCCcEEEEeCCCCCHHHHHHHHhhc----CCCCCEEEecCChhhh-----hc----cCCCCCHHHHHHHHHHHHHHhHH
Q psy11031 306 YTEADGIVIDGFPREMSQLIDFENKY----QIHPPMILIDCSKLVL-----HK----GQIDNSVSAFRRRLELFRERTLP 372 (520)
Q Consensus 306 ~~~~~G~ILDGFPrt~~Qae~l~~~~----~~p~~VI~Ld~~~~~~-----~r----~R~dD~~e~~~~Rl~~f~~~~~~ 372 (520)
..+.+|||||||||+.+||+.|++.+ ..++.||+|+||++.+ +| +|.||+++.+++|++.|++++.|
T Consensus 76 ~~~~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y~~~~~p 155 (186)
T PRK14528 76 ADCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEGRADDNEATIKNRLDNYNKKTLP 155 (186)
T ss_pred cCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccCCCCCCHHHHHHHHHHHHHHhHH
Confidence 67788999999999999999998765 3577899999999753 22 68899999999999999999999
Q ss_pred HHHHhhhCCCEEEEECCCCHHHHHHHHHHH
Q psy11031 373 MLRAMDVETRLTIVDGDTQLPQVREEFERV 402 (520)
Q Consensus 373 l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~ 402 (520)
+++||+.++.+++|||++++++|+..|...
T Consensus 156 v~~~y~~~~~~~~i~~~~~~~~v~~~~~~~ 185 (186)
T PRK14528 156 LLDFYAAQKKLSQVNGVGSLEEVTSLIQKE 185 (186)
T ss_pred HHHHHHhCCCEEEEECCCCHHHHHHHHHHh
Confidence 999999999999999999999999998764
No 8
>PRK14531 adenylate kinase; Provisional
Probab=100.00 E-value=2.6e-32 Score=259.68 Aligned_cols=172 Identities=26% Similarity=0.486 Sum_probs=155.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcc
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKT 304 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~ 304 (520)
..+|+|+|+|||||||+|++|+++| |+.|||+|+++| ++...++++|..++.++..|..+|++++..++.+++.
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~~-g~~~is~gd~lr---~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~-- 75 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAAH-GLRHLSTGDLLR---SEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLK-- 75 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh-CCCeEecccHHH---HHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--
Confidence 3579999999999999999999998 999999999999 7778889999999999999999999999999999998
Q ss_pred ccCCCcEEEEeCCCCCHHHHHHHHhhcC----CCCCEEEecCChhhh-----hccCCCCCHHHHHHHHHHHHHHhHHHHH
Q psy11031 305 KYTEADGIVIDGFPREMSQLIDFENKYQ----IHPPMILIDCSKLVL-----HKGQIDNSVSAFRRRLELFRERTLPMLR 375 (520)
Q Consensus 305 ~~~~~~G~ILDGFPrt~~Qae~l~~~~~----~p~~VI~Ld~~~~~~-----~r~R~dD~~e~~~~Rl~~f~~~~~~l~~ 375 (520)
.. ...|||||||||+..|++.|++.+. .++.||+|+||++.+ +|+|.||+++.+++|++.|++.+.|+++
T Consensus 76 ~~-~~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~r~dD~~e~i~~Rl~~y~~~~~pv~~ 154 (183)
T PRK14531 76 AL-NSGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARGRADDNEAVIRNRLEVYREKTAPLID 154 (183)
T ss_pred hc-cCCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 32 4679999999999999999887543 345699999999753 4678899999999999999999999999
Q ss_pred HhhhCCCEEEEECCCCHHHHHHHHHHHH
Q psy11031 376 AMDVETRLTIVDGDTQLPQVREEFERVL 403 (520)
Q Consensus 376 ~y~~~~~l~~IDa~~~~e~V~~~I~~~I 403 (520)
||..++.++.|||++++++|+++|.+.|
T Consensus 155 ~y~~~~~~~~id~~~~~~~v~~~i~~~l 182 (183)
T PRK14531 155 HYRQRGLLQSVEAQGSIEAITERIEKVL 182 (183)
T ss_pred HHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 9999899999999999999999998765
No 9
>PRK14526 adenylate kinase; Provisional
Probab=100.00 E-value=3.1e-32 Score=264.88 Aligned_cols=172 Identities=22% Similarity=0.408 Sum_probs=156.4
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcccc
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKY 306 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~~ 306 (520)
+|+|+|+|||||||+|+.|+++| ++.|+|+|+++| ++...+++.|..+++++.+|.++|++++.+++.++|. ..
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~-~~~~is~G~llr---~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~--~~ 75 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNEL-NYYHISTGDLFR---ENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKIN--TI 75 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCceeecChHHH---HhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHh--cc
Confidence 58999999999999999999998 999999999999 7888889999999999999999999999999999999 56
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhh-----hc-------------------------------c
Q psy11031 307 TEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVL-----HK-------------------------------G 350 (520)
Q Consensus 307 ~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~-----~r-------------------------------~ 350 (520)
.+.+|||||||||+.+||+.|++.+.. ..+|+|+|+++.+ +| +
T Consensus 76 ~~~~g~ilDGfPR~~~Qa~~l~~~~~~-~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~ 154 (211)
T PRK14526 76 KNNDNFILDGFPRNINQAKALDKFLPN-IKIINFLIDEELLIKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQ 154 (211)
T ss_pred cccCcEEEECCCCCHHHHHHHHHhcCC-CEEEEEECCHHHHHHHHHCCCcccccCCccccccCCCCccCcCCCCCCeeec
Confidence 678999999999999999999986542 4578899988642 11 5
Q ss_pred CCCCCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031 351 QIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK 405 (520)
Q Consensus 351 R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~ 405 (520)
|.||+++.+++|++.|++++.|+++||...+.++.|||++++++|+++|.+.|..
T Consensus 155 R~DD~~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~~~~V~~~i~~~l~~ 209 (211)
T PRK14526 155 RKDDKEESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKDIDEVKKKLIEIISK 209 (211)
T ss_pred cCCCCHHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence 8899999999999999999999999999989999999999999999999988764
No 10
>PTZ00088 adenylate kinase 1; Provisional
Probab=100.00 E-value=8.6e-32 Score=264.74 Aligned_cols=173 Identities=21% Similarity=0.356 Sum_probs=155.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMK 302 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~ 302 (520)
..|.+|+|+|+|||||||+|++|+++| |+.|||+|+++| ++.+.++++|..+++++.+|.++|++++.+++.+++.
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~~-g~~~is~gdllr---~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~ 79 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKKE-NLKHINMGNILR---EEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIA 79 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh-CCcEEECChHHH---HHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHH
Confidence 456779999999999999999999998 999999999999 7777888999999999999999999999999999998
Q ss_pred ccc--cCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhh-----h---------------------------
Q psy11031 303 KTK--YTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVL-----H--------------------------- 348 (520)
Q Consensus 303 ~~~--~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~-----~--------------------------- 348 (520)
. ..+.+||||||||||..||+.|++. ..++.||+|+++++.+ +
T Consensus 80 --~~~~~~~~g~iLDGfPRt~~Qa~~l~~~-~~~~~vi~l~~~~~~~~~Rl~~Rr~~~~~g~~y~~~~~~~~~~~~pp~~ 156 (229)
T PTZ00088 80 --KVTDDCFKGFILDGFPRNLKQCKELGKI-TNIDLFVNIYLPRNILIKKLLGRRICNTCNRNFNIAHIRSDPYDMPPIL 156 (229)
T ss_pred --hhccccCceEEEecCCCCHHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHcCcCCCccCCcceecccccccccCCCCC
Confidence 4 4557899999999999999999875 4677899999987431 0
Q ss_pred --------------ccCCCCCHHHHHHHHHHHHHHhHHHHHHhhhCCC-EEEE---ECCCCHHHHHHHHHHH
Q psy11031 349 --------------KGQIDNSVSAFRRRLELFRERTLPMLRAMDVETR-LTIV---DGDTQLPQVREEFERV 402 (520)
Q Consensus 349 --------------r~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~-l~~I---Da~~~~e~V~~~I~~~ 402 (520)
.+|.||+++.+++|++.|++++.++++||.++++ ++.| ||++++++|++.|.+.
T Consensus 157 ~~~~c~~~~~~~~l~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~y~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 228 (229)
T PTZ00088 157 PPADCEGCKGNPKLQKRSDDTEEIVAHRLNTYESTNSPIIQFFKNENCNLVDFEITRGLRDFDDFYRIVLQR 228 (229)
T ss_pred CCCcccccCCcccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHhh
Confidence 1588999999999999999999999999999999 9888 7999999999998764
No 11
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.97 E-value=4e-31 Score=257.61 Aligned_cols=173 Identities=25% Similarity=0.459 Sum_probs=156.7
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcccc
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKY 306 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~~ 306 (520)
+|+|+|+|||||||+|+.|+++| |+.|+|+|+++| ++...+++.|..+++++.+|..+|++++.+++.++|. ..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~-~~~~is~~dl~r---~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~--~~ 75 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY-GIPHISTGDMLR---AAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLA--QP 75 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCcEEECCccHH---HHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHh--cc
Confidence 69999999999999999999998 999999999999 7777889999999999999999999999999999999 66
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHhhc----CCCCCEEEecCChhhh-----hc----------------------------
Q psy11031 307 TEADGIVIDGFPREMSQLIDFENKY----QIHPPMILIDCSKLVL-----HK---------------------------- 349 (520)
Q Consensus 307 ~~~~G~ILDGFPrt~~Qae~l~~~~----~~p~~VI~Ld~~~~~~-----~r---------------------------- 349 (520)
.+.+||||||||++.+||+.|++.+ ..++.||+|+|+++.+ +|
T Consensus 76 ~~~~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~ 155 (215)
T PRK00279 76 DCKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGE 155 (215)
T ss_pred CccCCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCcccccCCCCCCcCcCcCCCC
Confidence 6777999999999999999997553 2456799999998642 11
Q ss_pred ---cCCCCCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031 350 ---GQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK 405 (520)
Q Consensus 350 ---~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~ 405 (520)
+|.||+++.+++|+..|++++.++++||+..+.++.|||++++++||++|.+.|..
T Consensus 156 ~l~~r~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (215)
T PRK00279 156 ELIQRADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALGK 214 (215)
T ss_pred cccCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence 46889999999999999999999999999989999999999999999999988753
No 12
>PRK14532 adenylate kinase; Provisional
Probab=99.97 E-value=1.6e-30 Score=247.70 Aligned_cols=172 Identities=24% Similarity=0.451 Sum_probs=155.8
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcccc
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKY 306 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~~ 306 (520)
.|+|+|+|||||||+|++|+++| |+.|||+|+++| ++.+.+++.|..+++++..|+.+|++++.+++..++. ..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~-g~~~is~~d~lr---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~ 75 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER-GMVQLSTGDMLR---AAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLP--EA 75 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-CCeEEeCcHHHH---HHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHh--Cc
Confidence 58999999999999999999998 999999999999 7777889999999999999999999999999999998 66
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHhhc----CCCCCEEEecCChhhh-----hc----cCCCCCHHHHHHHHHHHHHHhHHH
Q psy11031 307 TEADGIVIDGFPREMSQLIDFENKY----QIHPPMILIDCSKLVL-----HK----GQIDNSVSAFRRRLELFRERTLPM 373 (520)
Q Consensus 307 ~~~~G~ILDGFPrt~~Qae~l~~~~----~~p~~VI~Ld~~~~~~-----~r----~R~dD~~e~~~~Rl~~f~~~~~~l 373 (520)
.++.|||||||||+.+|++.|++.+ ..++.+|+|+|+++.+ +| +|.+++.+.+.+|+..|+++..++
T Consensus 76 ~~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~~r~dd~~~~~~~Rl~~~~~~~~~i 155 (188)
T PRK14532 76 EAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQGRPDDNPEVFVTRLDAYNAQTAPL 155 (188)
T ss_pred CccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 7789999999999999999987554 3456799999999753 12 477889999999999999999999
Q ss_pred HHHhhhCCCEEEEECCCCHHHHHHHHHHHHH
Q psy11031 374 LRAMDVETRLTIVDGDTQLPQVREEFERVLK 404 (520)
Q Consensus 374 ~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~ 404 (520)
+++|++.+.++.|||++++++|+++|.+.|.
T Consensus 156 ~~~y~~~~~~~~id~~~~~eev~~~I~~~l~ 186 (188)
T PRK14532 156 LPYYAGQGKLTEVDGMGSIEAVAASIDAALE 186 (188)
T ss_pred HHHHHhcCCEEEEECCCCHHHHHHHHHHHHh
Confidence 9999988889999999999999999998874
No 13
>PRK14527 adenylate kinase; Provisional
Probab=99.97 E-value=2.5e-30 Score=247.49 Aligned_cols=174 Identities=25% Similarity=0.456 Sum_probs=155.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMK 302 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~ 302 (520)
..+++|+|+|+|||||||+|+.|+++| |+.|+|+|++++ ++...+++++..++.++.+|..+|++++..++.+++.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~-~~~~is~gd~~r---~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~ 79 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQEL-GLKKLSTGDILR---DHVARGTELGQRAKPIMEAGDLVPDELILALIRDELA 79 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh-CCCCCCccHHHH---HHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Confidence 467899999999999999999999998 999999999999 6777788999999999999999999999999999998
Q ss_pred ccccCCCcEEEEeCCCCCHHHHHHHHhhc----CCCCCEEEecCChhhh-----h----ccCCCCCHHHHHHHHHHHHHH
Q psy11031 303 KTKYTEADGIVIDGFPREMSQLIDFENKY----QIHPPMILIDCSKLVL-----H----KGQIDNSVSAFRRRLELFRER 369 (520)
Q Consensus 303 ~~~~~~~~G~ILDGFPrt~~Qae~l~~~~----~~p~~VI~Ld~~~~~~-----~----r~R~dD~~e~~~~Rl~~f~~~ 369 (520)
...+ .+|||||||++..|++.|+..+ ..+..||+|+|+++.+ + ++|.||+++.+++|++.|+++
T Consensus 80 --~~~~-~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd~~~~~~~R~~~y~~~ 156 (191)
T PRK14527 80 --GMEP-VRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEGRSDDNEETVRRRQQVYREQ 156 (191)
T ss_pred --cCCC-CcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCCCCCCCHHHHHHHHHHHHHH
Confidence 4444 5899999999999999887643 2345589999999763 2 257899999999999999999
Q ss_pred hHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHH
Q psy11031 370 TLPMLRAMDVETRLTIVDGDTQLPQVREEFERVL 403 (520)
Q Consensus 370 ~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I 403 (520)
+.++++||+.++.+++|||++++++|+++|...|
T Consensus 157 ~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 190 (191)
T PRK14527 157 TQPLVDYYEARGHLKRVDGLGTPDEVYARILKAL 190 (191)
T ss_pred hHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHhh
Confidence 9999999999999999999999999999998765
No 14
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=99.97 E-value=2.8e-31 Score=244.50 Aligned_cols=146 Identities=25% Similarity=0.492 Sum_probs=129.2
Q ss_pred EEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhccccCCC
Q psy11031 230 VVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKYTEA 309 (520)
Q Consensus 230 vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~~~~~ 309 (520)
|+|||||||||+|++|+++| |+.|||+++++| ++.+.++++|..+++++.+|+.+|++++.+++..+|. +..+.
T Consensus 1 i~G~PgsGK~t~~~~la~~~-~~~~is~~~llr---~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~--~~~~~ 74 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY-GLVHISVGDLLR---EEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLE--QPPCN 74 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH-TSEEEEHHHHHH---HHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHH--SGGTT
T ss_pred CcCCCCCChHHHHHHHHHhc-CcceechHHHHH---HHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHh--hhccc
Confidence 68999999999999999998 999999999999 7778899999999999999999999999999999999 55678
Q ss_pred cEEEEeCCCCCHHHHHHHHh----hcCCCCCEEEecCChhhhhccCCCCCHHHHHHHHHHHHHHhHHHHHHhhhCC
Q psy11031 310 DGIVIDGFPREMSQLIDFEN----KYQIHPPMILIDCSKLVLHKGQIDNSVSAFRRRLELFRERTLPMLRAMDVET 381 (520)
Q Consensus 310 ~G~ILDGFPrt~~Qae~l~~----~~~~p~~VI~Ld~~~~~~~r~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~ 381 (520)
+||||||||||.+||+.|++ ....++.||+|+|+++.+.++-..|+.+.+++|++.|++++.++++||+++|
T Consensus 75 ~g~ildGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~d~~~~i~~Rl~~y~~~~~~i~~~y~~~g 150 (151)
T PF00406_consen 75 RGFILDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQDNEEVIKKRLEEYRENTEPILDYYKEQG 150 (151)
T ss_dssp TEEEEESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHTGSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ceeeeeeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999998 5566778999999998765443448899999999999999999999999876
No 15
>PRK02496 adk adenylate kinase; Provisional
Probab=99.97 E-value=3.7e-30 Score=244.48 Aligned_cols=172 Identities=26% Similarity=0.474 Sum_probs=156.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhccc
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTK 305 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~ 305 (520)
.+|+|+|+|||||||+|+.|+++| |+.|+++|++++ ++...+++.|..++.++.+|..+|++++.+++.+++. +
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~-~~~~i~~~~~~~---~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~--~ 75 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHL-HIPHISTGDILR---QAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQ--Q 75 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-CCcEEEhHHHHH---HHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHh--C
Confidence 579999999999999999999998 999999999999 7777888999999999999999999999999999998 6
Q ss_pred cCCCcEEEEeCCCCCHHHHHHHHhhc----CCCCCEEEecCChhhh-----hccCCCCCHHHHHHHHHHHHHHhHHHHHH
Q psy11031 306 YTEADGIVIDGFPREMSQLIDFENKY----QIHPPMILIDCSKLVL-----HKGQIDNSVSAFRRRLELFRERTLPMLRA 376 (520)
Q Consensus 306 ~~~~~G~ILDGFPrt~~Qae~l~~~~----~~p~~VI~Ld~~~~~~-----~r~R~dD~~e~~~~Rl~~f~~~~~~l~~~ 376 (520)
.++..|||||||||+..|++.|++.+ ..++.+|+|+|+.+.+ .|+|.+|+++.+++|++.|++++.++++|
T Consensus 76 ~~~~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~dd~~~~~~~r~~~y~~~~~~v~~~ 155 (184)
T PRK02496 76 PDAANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGRKDDTEEVIRRRLEVYREQTAPLIDY 155 (184)
T ss_pred cCccCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 66788999999999999999888653 3567799999999763 35677889999999999999999999999
Q ss_pred hhhCCCEEEEECCCCHHHHHHHHHHHH
Q psy11031 377 MDVETRLTIVDGDTQLPQVREEFERVL 403 (520)
Q Consensus 377 y~~~~~l~~IDa~~~~e~V~~~I~~~I 403 (520)
|+.++.++.|||++++++|+++|.+.|
T Consensus 156 ~~~~~~~~~Ida~~~~~~V~~~i~~~l 182 (184)
T PRK02496 156 YRDRQKLLTIDGNQSVEAVTTELKAAL 182 (184)
T ss_pred HHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 988888999999999999999998876
No 16
>PLN02200 adenylate kinase family protein
Probab=99.97 E-value=7.2e-30 Score=252.17 Aligned_cols=179 Identities=23% Similarity=0.543 Sum_probs=159.9
Q ss_pred cCCCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHH
Q psy11031 220 VERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYA 299 (520)
Q Consensus 220 ~~~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~ 299 (520)
+....|.+|+|+|+|||||||+|++|+++| |+.|||+|+++| ++....++.|..+.+++..|+.+|++++.+++..
T Consensus 38 ~~~~~~~ii~I~G~PGSGKsT~a~~La~~~-g~~his~gdllR---~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~ 113 (234)
T PLN02200 38 SKEKTPFITFVLGGPGSGKGTQCEKIVETF-GFKHLSAGDLLR---REIASNSEHGAMILNTIKEGKIVPSEVTVKLIQK 113 (234)
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHHHHh-CCeEEEccHHHH---HHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 345667899999999999999999999998 999999999999 7777788899999999999999999999999999
Q ss_pred HHhccccCCCcEEEEeCCCCCHHHHHHHHhhcC-CCCCEEEecCChhhh-----hc--cCCCCCHHHHHHHHHHHHHHhH
Q psy11031 300 EMKKTKYTEADGIVIDGFPREMSQLIDFENKYQ-IHPPMILIDCSKLVL-----HK--GQIDNSVSAFRRRLELFRERTL 371 (520)
Q Consensus 300 ~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~-~p~~VI~Ld~~~~~~-----~r--~R~dD~~e~~~~Rl~~f~~~~~ 371 (520)
++. .. ..+||||||||++..|++.|++.++ .++.||+|+|+++.+ .| .|.+|+.+.+++|++.|++.+.
T Consensus 114 ~l~--~~-~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~~r~dd~~e~~~~Rl~~y~~~~~ 190 (234)
T PLN02200 114 EME--SS-DNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQGRVDDNIDTIKKRLKVFNALNL 190 (234)
T ss_pred HHh--cC-CCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 998 43 3578999999999999999988765 466799999999753 22 4688899999999999999999
Q ss_pred HHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031 372 PMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK 405 (520)
Q Consensus 372 ~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~ 405 (520)
++++||+..+.++.|||++++++|++.|.+.|..
T Consensus 191 pv~~~y~~~~~~~~IDa~~~~eeV~~~v~~~l~~ 224 (234)
T PLN02200 191 PVIDYYSKKGKLYTINAVGTVDEIFEQVRPIFAA 224 (234)
T ss_pred HHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 9999999888899999999999999999988765
No 17
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.97 E-value=1.4e-29 Score=239.60 Aligned_cols=170 Identities=26% Similarity=0.582 Sum_probs=151.8
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcccc
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKY 306 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~~ 306 (520)
+|+|+|+|||||||+|+.|+++| |+.|||+++++| ++...+++.|+.+++++.+|..+|++++.+++.+++. ..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~-~~~~is~~d~lr---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~--~~ 74 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF-GFTHLSAGDLLR---AEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQ--AD 74 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc-CCeEEECChHHH---HHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHh--cc
Confidence 48999999999999999999998 999999999999 6666778899999999999999999999999999998 44
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHhhcC---CCCCEEEecCChhhhh-----c----cCCCCCHHHHHHHHHHHHHHhHHHH
Q psy11031 307 TEADGIVIDGFPREMSQLIDFENKYQ---IHPPMILIDCSKLVLH-----K----GQIDNSVSAFRRRLELFRERTLPML 374 (520)
Q Consensus 307 ~~~~G~ILDGFPrt~~Qae~l~~~~~---~p~~VI~Ld~~~~~~~-----r----~R~dD~~e~~~~Rl~~f~~~~~~l~ 374 (520)
. .+||||||||++..|++.|.+.+. .++.+|+|+|+.+... | +|.+++.+.+++|++.|++...+++
T Consensus 75 ~-~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~y~~~~~~i~ 153 (183)
T TIGR01359 75 G-SKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQSSGRVDDNIESIKKRFRTYNEQTLPVI 153 (183)
T ss_pred C-CCcEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4 789999999999999999886543 5677999999997531 2 3567789999999999999999999
Q ss_pred HHhhhCCCEEEEECCCCHHHHHHHHHHHH
Q psy11031 375 RAMDVETRLTIVDGDTQLPQVREEFERVL 403 (520)
Q Consensus 375 ~~y~~~~~l~~IDa~~~~e~V~~~I~~~I 403 (520)
++|+..+.++.|||++++++|+++|.+.|
T Consensus 154 ~~~~~~~~~~~Id~~~~~~~v~~~i~~~l 182 (183)
T TIGR01359 154 EHYENKGKVKEINAEGSVEEVFEDVEKIF 182 (183)
T ss_pred HHHHhCCCEEEEECCCCHHHHHHHHHHHh
Confidence 99998888999999999999999998765
No 18
>PRK14530 adenylate kinase; Provisional
Probab=99.96 E-value=1.5e-28 Score=239.56 Aligned_cols=169 Identities=24% Similarity=0.424 Sum_probs=147.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhccc-----ccCCcchHHHHhhhhcCCccchHHHHHHHHHH
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIE-----DDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAE 300 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~-----~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~ 300 (520)
++|+|+|+|||||||+|++|+++| |+.|+++|++++ ++. ..++..|. ++.++..|..+|++++..++..+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~-~~~~i~~g~~lr---~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~~~~~~l~~~ 78 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF-GVEHVTTGDALR---ANKQMDISDMDTEYDT-PGEYMDAGELVPDAVVNEIVEEA 78 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh-CCeEEeccHHHH---HhccCCcccccchHHH-HHHHHHcCCCCCHHHHHHHHHHH
Confidence 479999999999999999999998 999999999999 554 33445554 67889999999999999999988
Q ss_pred HhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-----c--------------------------
Q psy11031 301 MKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-----K-------------------------- 349 (520)
Q Consensus 301 l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-----r-------------------------- 349 (520)
+. ...||||||||++.+|++.|++.. .++.||+|+|+.+.+. |
T Consensus 79 l~-----~~~~~IldG~pr~~~q~~~l~~~~-~~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~ 152 (215)
T PRK14530 79 LS-----DADGFVLDGYPRNLEQAEYLESIT-DLDVVLYLDVSEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDEC 152 (215)
T ss_pred Hh-----cCCCEEEcCCCCCHHHHHHHHHhc-CCCEEEEEeCCHHHHHHHHhCCCcCcccCCccccCCCCCcccccCccc
Confidence 77 246999999999999999998653 4678999999986421 1
Q ss_pred -----cCCCCCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031 350 -----GQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK 405 (520)
Q Consensus 350 -----~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~ 405 (520)
+|.+|+++.+++|+..|++++.++++||.+++.++.|||++++++|++.|.+.|..
T Consensus 153 ~~rl~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 213 (215)
T PRK14530 153 GGELIQRDDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAIDD 213 (215)
T ss_pred CCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHhc
Confidence 47789999999999999999999999999888999999999999999999988865
No 19
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.96 E-value=1.2e-28 Score=233.51 Aligned_cols=167 Identities=22% Similarity=0.460 Sum_probs=150.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhccc
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTK 305 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~ 305 (520)
.+|+|+|+|||||||||++|++++ +++|||+|+++| +.....+++|..++.+++.|++||++++..++..++. .
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~-~i~hlstgd~~r---~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~--~ 74 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKL-GLPHLDTGDILR---AAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLD--E 74 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh-CCcEEcHhHHhH---hhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHH--h
Confidence 369999999999999999999997 999999999999 7777889999999999999999999999999999999 5
Q ss_pred cCCCcEEEEeCCCCCHHHHHHHHhhcC----CCCCEEEecCChhhh-----hcc-CCCCCHHHHHHHHHHHHHHhHHHHH
Q psy11031 306 YTEADGIVIDGFPREMSQLIDFENKYQ----IHPPMILIDCSKLVL-----HKG-QIDNSVSAFRRRLELFRERTLPMLR 375 (520)
Q Consensus 306 ~~~~~G~ILDGFPrt~~Qae~l~~~~~----~p~~VI~Ld~~~~~~-----~r~-R~dD~~e~~~~Rl~~f~~~~~~l~~ 375 (520)
.+|..|||+|||||++.||+.|++.+. ..+.++.++++++.. ++. |.||+++.+++|+..|++.+.|++.
T Consensus 75 ~d~~~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~r~dd~~~~~~~R~~~y~~~~~pli~ 154 (178)
T COG0563 75 ADCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRVREDDNEETVKKRLKVYHEQTAPLIE 154 (178)
T ss_pred hcccCeEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccccccCCHHHHHHHHHHHHhcccchhh
Confidence 677669999999999999999997633 345689999988542 233 7899999999999999999999999
Q ss_pred HhhhCCCEEEEECCCCHHHHHHHHHHHH
Q psy11031 376 AMDVETRLTIVDGDTQLPQVREEFERVL 403 (520)
Q Consensus 376 ~y~~~~~l~~IDa~~~~e~V~~~I~~~I 403 (520)
||. +.|||.+++++|++.+...+
T Consensus 155 ~y~-----~~id~~~~i~~v~~~i~~~l 177 (178)
T COG0563 155 YYS-----VTIDGSGEIEEVLADILKAL 177 (178)
T ss_pred hhe-----eeccCCCCHHHHHHHHHHhh
Confidence 997 78999999999999998765
No 20
>KOG3079|consensus
Probab=99.96 E-value=1.5e-28 Score=228.33 Aligned_cols=147 Identities=21% Similarity=0.410 Sum_probs=133.0
Q ss_pred ccCcccCcHHHHHHHHHHc-c----------CCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHhcC
Q psy11031 12 LDFPSHRNPLKMFNLFVSE-E----------VKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIK 80 (520)
Q Consensus 12 ~~~~~h~s~G~~l~~~i~~-G----------~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~~~ 80 (520)
+++. |+|+|++||..+++ | +++|.+||.+++++||.++|.+...++|||||||||+.+|+..|+..+.
T Consensus 32 y~ft-HlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~~~~~~~fLIDGyPR~~~q~~~fe~~i~ 110 (195)
T KOG3079|consen 32 YGFT-HLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRSSGDSNGFLIDGYPRNVDQLVEFERKIQ 110 (195)
T ss_pred cCce-eecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHhcCCCCeEEecCCCCChHHHHHHHHHhc
Confidence 3444 99999999877776 4 3577799999999999999987777788999999999999999999988
Q ss_pred -CcCEEEEEEcCHHHHHHHh-hhCccCCccc--hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHH
Q psy11031 81 -TINGVILIAWRQSLLERQI-DYGAKLGHVI--LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTA 156 (520)
Q Consensus 81 -~pd~VI~L~~pd~~l~~Rl-~rg~~~~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~ 156 (520)
.+++|++|+|+++++.+|+ .|+..+.|+| .+++++|++.|+++|.||++||+++|+++.|||++++++||.++.+.
T Consensus 111 ~~~~fvl~fdc~ee~~l~Rll~R~q~~~R~DDn~esikkR~et~~~~t~Pvi~~~e~kg~l~~i~a~~~~d~Vf~~v~~~ 190 (195)
T KOG3079|consen 111 GDPDFVLFFDCPEETMLKRLLHRGQSNSRSDDNEESIKKRLETYNKSTLPVIEYYEKKGKLLKINAERSVDDVFEEVVTA 190 (195)
T ss_pred CCCCEEEEEeCCHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHcchHHHHHHHccCcEEEecCCCCHHHHHHHHHHH
Confidence 7999999999999999999 6887767885 89999999999999999999999999999999999999999999998
Q ss_pred HHH
Q psy11031 157 VLK 159 (520)
Q Consensus 157 l~~ 159 (520)
+..
T Consensus 191 id~ 193 (195)
T KOG3079|consen 191 IDA 193 (195)
T ss_pred hhc
Confidence 864
No 21
>PLN02842 nucleotide kinase
Probab=99.96 E-value=4.8e-28 Score=259.28 Aligned_cols=180 Identities=23% Similarity=0.432 Sum_probs=161.5
Q ss_pred EEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhccccCC
Q psy11031 229 WVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKYTE 308 (520)
Q Consensus 229 ~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~~~~ 308 (520)
+|+|+|||||||||++|+++| |+.|+|+|+++| ++.+.++++|..|++++.+|+++|++++..++.+++. ...+
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~l-g~~hIs~gdLLR---~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~--~~~~ 74 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKF-GLVHISTGDLLR---AEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLS--REDA 74 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHh-CCCEEEccHHHH---HHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHh--Cccc
Confidence 489999999999999999998 999999999999 7888999999999999999999999999999999998 4443
Q ss_pred -CcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhh-----h---------------------------ccCCCCC
Q psy11031 309 -ADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVL-----H---------------------------KGQIDNS 355 (520)
Q Consensus 309 -~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~-----~---------------------------r~R~dD~ 355 (520)
.+|||||||||+..|++.|++....|+.||+|||+++.+ + .+|.||+
T Consensus 75 ~~~G~ILDGfPRt~~Qa~~Le~~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~pP~~~~~~~rL~~R~DD~ 154 (505)
T PLN02842 75 KEKGWLLDGYPRSFAQAQSLEKLKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNFPPESEEIKARLITRPDDT 154 (505)
T ss_pred cCCcEEEeCCCCcHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccCCCCccccccccccCCCCC
Confidence 689999999999999999998776788899999998752 1 1578999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy11031 356 VSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDDLENTARP 416 (520)
Q Consensus 356 ~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~~~~~~~~~ 416 (520)
++.+++|++.|++++.+++++|.. .++.|||++++++|+++|.+.|...+.++.+-.+.
T Consensus 155 eE~IkkRL~~Y~~~t~pIl~~Y~~--rl~~IDAsqs~EeVfeeI~~iL~~~L~~~~~~~~~ 213 (505)
T PLN02842 155 EEKVKARLQIYKKNAEAILSTYSD--IMVKIDGNRPKEVVFEEISSLLSQIQKDATKMIKT 213 (505)
T ss_pred HHHHHHHHHHHHHHhhhHHHhcCc--EEEEEECCCCHHHHHHHHHHHHHHHHhhhhhhccc
Confidence 999999999999999999999964 58899999999999999999999888777654443
No 22
>KOG3078|consensus
Probab=99.95 E-value=4.1e-28 Score=235.66 Aligned_cols=180 Identities=22% Similarity=0.379 Sum_probs=165.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhc
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKK 303 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~ 303 (520)
++.+++++|+|||||+|+|.+|++.| ++.||++|+++| ++++++|++|.++++++..|++|||+++..++..++.
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~-~~~hl~tGdllr---~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~- 88 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNF-GVIHISTGDLLR---DEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLE- 88 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhc-CCccchhHHHHH---HHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhcc-
Confidence 57899999999999999999999998 999999999999 8888999999999999999999999999998888888
Q ss_pred cccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-----------------------------------
Q psy11031 304 TKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH----------------------------------- 348 (520)
Q Consensus 304 ~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~----------------------------------- 348 (520)
...|++||||||||||..||+.|......++.||.|+|+++.+.
T Consensus 89 -~~~~~~~~ildg~Prt~~qa~~l~~~~~~~d~Vi~l~vp~~~L~~ri~~r~ihp~sG~~Yh~~~~pPk~~~~dDitgep 167 (235)
T KOG3078|consen 89 -NPRCQKGFILDGFPRTVQQAEELLDRIAQIDLVINLKVPEEVLVDRITGRRIHPASGRVYHLEFNPPKVPGKDDITGEP 167 (235)
T ss_pred -ccccccccccCCCCcchHHHHHHHHccCCcceEEEecCCHHHHHHHHhcccccCcccceecccccCCccccccccccCh
Confidence 66799999999999999999999998888999999999986420
Q ss_pred -ccCCCCCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH
Q psy11031 349 -KGQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDDL 410 (520)
Q Consensus 349 -r~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~~~ 410 (520)
-+|.||+++.+++|++.|++++.++++||...+.+..++|.. .++||..+...+...+...
T Consensus 168 L~qr~dD~~e~v~~rL~~y~~~~~pv~eyY~k~~~l~~~~~~~-~~~v~~~v~~~l~~~~~~~ 229 (235)
T KOG3078|consen 168 LIQREDDKPEVVKKRLKAYKEQTKPVLEYYKKKGVLIEFSGEK-PEEVFPNVYAFLSKKVPER 229 (235)
T ss_pred hhcCccccHHHHHHHHHHHhhcchHHHHHHHhcCeeeeccCcc-hhHhHHHHHHHHHhhhhhh
Confidence 268999999999999999999999999999999999999999 9999999998887766443
No 23
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=99.95 E-value=6.8e-28 Score=229.61 Aligned_cols=163 Identities=26% Similarity=0.512 Sum_probs=147.6
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcccc
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKY 306 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~~ 306 (520)
+|+|+|+|||||||+|+.|+++| |+.|++++++++ +....+++.|..+++++.+|..+|++++.+++..+|. ..
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~-~~~~i~~~~l~~---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~--~~ 74 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKY-GLPHISTGDLLR---EEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLK--KP 74 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc-CCeEEECcHHHH---HHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHh--cc
Confidence 48999999999999999999998 999999999999 7777778899999999999999999999999999998 44
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHhhcC---CCCCEEEecCChhhh-----hc-----------------------cCCCCC
Q psy11031 307 TEADGIVIDGFPREMSQLIDFENKYQ---IHPPMILIDCSKLVL-----HK-----------------------GQIDNS 355 (520)
Q Consensus 307 ~~~~G~ILDGFPrt~~Qae~l~~~~~---~p~~VI~Ld~~~~~~-----~r-----------------------~R~dD~ 355 (520)
...+||||||||++..|++.|++... .++.+|+|+|+++.+ .| +|.+|+
T Consensus 75 ~~~~~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~l~~r~dd~ 154 (194)
T cd01428 75 DCKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRICPVSGRVYHLGKDDVTGEPLSQRSDDN 154 (194)
T ss_pred cccCCEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCCcCCcCCcCCCcccCCccccCCCCC
Confidence 45789999999999999999999886 678899999999753 12 267889
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHH
Q psy11031 356 VSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQV 395 (520)
Q Consensus 356 ~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V 395 (520)
.+.+++|+..|++++.++++||.+.+.++.|||++++++|
T Consensus 155 ~~~i~~R~~~y~~~~~~i~~~~~~~~~~~~id~~~~~~~v 194 (194)
T cd01428 155 EETIKKRLEVYKEQTAPLIDYYKKKGKLVEIDGSGDIDEV 194 (194)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhCCCEEEEECCCCcCcC
Confidence 9999999999999999999999998999999999998764
No 24
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.95 E-value=1.7e-26 Score=218.64 Aligned_cols=175 Identities=27% Similarity=0.550 Sum_probs=154.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcc
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKT 304 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~ 304 (520)
.++|+|+|+|||||||+|+.|+++| |+.|+++|++++ .....+++.+..++.++.+|..+|++.+.+++..++..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~-g~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 77 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY-GFTHLSTGDLLR---AEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVA- 77 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh-CCcEEeHHHHHH---HHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-
Confidence 5789999999999999999999998 999999999999 66556777889999999999999999999999988872
Q ss_pred ccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-----c----cCCCCCHHHHHHHHHHHHHHhHHHHH
Q psy11031 305 KYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-----K----GQIDNSVSAFRRRLELFRERTLPMLR 375 (520)
Q Consensus 305 ~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-----r----~R~dD~~e~~~~Rl~~f~~~~~~l~~ 375 (520)
....+.|||+||||++..|++.|...+..++.+|+|+|+.+.+. | .|.+++++.+.+|+..|+++..++++
T Consensus 78 ~~~~~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~~~~~~~~~~ 157 (188)
T TIGR01360 78 ALGTSKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAETSGRVDDNEKTIKKRLETYYKATEPVIA 157 (188)
T ss_pred ccCcCCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhhHHHHH
Confidence 34457899999999999999999988777788999999987531 2 35677899999999999999999999
Q ss_pred HhhhCCCEEEEECCCCHHHHHHHHHHHHH
Q psy11031 376 AMDVETRLTIVDGDTQLPQVREEFERVLK 404 (520)
Q Consensus 376 ~y~~~~~l~~IDa~~~~e~V~~~I~~~I~ 404 (520)
+|...+.++.|||+.++++|++.|...|.
T Consensus 158 ~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 186 (188)
T TIGR01360 158 YYETKGKLRKINAEGTVDDVFLQVCTAID 186 (188)
T ss_pred HHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 99877889999999999999999988875
No 25
>PLN02674 adenylate kinase
Probab=99.95 E-value=4.7e-27 Score=232.39 Aligned_cols=147 Identities=21% Similarity=0.374 Sum_probs=126.0
Q ss_pred ccccCcccCcHHHHHHHHHHcc----------CCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHh-
Q psy11031 10 SLLDFPSHRNPLKMFNLFVSEE----------VKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDK- 78 (520)
Q Consensus 10 ~~~~~~~h~s~G~~l~~~i~~G----------~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~- 78 (520)
+-++++ |+|+|+++++.+.++ +++|++|||+++++++.++|...++.+||||||||||..||+.|.+.
T Consensus 53 ~~~~~~-his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~~g~ilDGfPRt~~Qa~~l~~~l 131 (244)
T PLN02674 53 DEYCLC-HLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTVVQAQKLDEML 131 (244)
T ss_pred HHcCCc-EEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcCcCCcEEEeCCCCCHHHHHHHHHHH
Confidence 345677 999999988776554 34677999999999999999887788999999999999999776543
Q ss_pred ---cCCcCEEEEEEcCHHHHHHHhh-h------Ccc---------------------CCccc--hHHHHHHHHHHHhccc
Q psy11031 79 ---IKTINGVILIAWRQSLLERQID-Y------GAK---------------------LGHVI--LSLARMELANFYQNVT 125 (520)
Q Consensus 79 ---~~~pd~VI~L~~pd~~l~~Rl~-r------g~~---------------------~~r~d--~e~i~~Rl~~Y~~~t~ 125 (520)
+..+++||+|+||++++++|+. | |.. ..|.| ++++++||+.|+++|.
T Consensus 132 ~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~~~g~~yn~~~~pp~~~~~~~~~g~~L~~R~DD~~e~i~~RL~~Y~~~t~ 211 (244)
T PLN02674 132 AKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTE 211 (244)
T ss_pred HhcCCCCCEEEEEECCHHHHHHHHhccccccccCCccccccCCCcccCcccccCCccccCCCCCHHHHHHHHHHHHHHhH
Confidence 4689999999999999999984 3 211 12554 8999999999999999
Q ss_pred hHHHHhhhCCcEEEEeCCCChHHHHHHHHHHH
Q psy11031 126 PVTDFFDQRGMLIAVNGERNPVEVYADFRTAV 157 (520)
Q Consensus 126 pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l 157 (520)
||++||+++|+++.|||++++++||++|+.+|
T Consensus 212 pv~~~Y~~~g~l~~Ida~~~~~eV~~~i~~~l 243 (244)
T PLN02674 212 PVIDYYAKKGVVANLHAEKPPKEVTAEVQKAL 243 (244)
T ss_pred HHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999998876
No 26
>PLN02459 probable adenylate kinase
Probab=99.95 E-value=2.9e-27 Score=235.11 Aligned_cols=148 Identities=18% Similarity=0.318 Sum_probs=124.1
Q ss_pred ccccCcccCcHHHHHHHHHHcc----------CCCCCCCCHHHHHHHHHHHHhcC--CCCCcEEEeCCCCCHHhHHHHHH
Q psy11031 10 SLLDFPSHRNPLKMFNLFVSEE----------VKDFSFLSSKTVTEVLMLEMKMS--PAAKAFLISGYPRNMRDVVEYSD 77 (520)
Q Consensus 10 ~~~~~~~h~s~G~~l~~~i~~G----------~~~g~lVPdelv~~ll~~~l~~~--~~~~G~ILDGFPRt~~QA~~~~~ 77 (520)
+-++++ |+++|+++++.+..+ +++|.+|||++++++|.++|.+. .+.+||||||||||..||+.|.
T Consensus 51 ~~~~~~-~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~~~~~~~~g~iLDGFPRt~~Qa~~Le- 128 (261)
T PLN02459 51 KLLGVP-HIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEEEGESGFILDGFPRTVRQAEILE- 128 (261)
T ss_pred HHhCCc-EEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCCceEEEeCCCCCHHHHHHHH-
Confidence 345677 888888877655443 33566999999999999999864 3589999999999999996665
Q ss_pred hcCCcCEEEEEEcCHHHHHHHhh-h------Ccc--------------------------------CCccc--hHHHHHH
Q psy11031 78 KIKTINGVILIAWRQSLLERQID-Y------GAK--------------------------------LGHVI--LSLARME 116 (520)
Q Consensus 78 ~~~~pd~VI~L~~pd~~l~~Rl~-r------g~~--------------------------------~~r~d--~e~i~~R 116 (520)
....+++||+|+||++++++|+. | |.. .+|.| ++++++|
T Consensus 129 ~~~~id~Vi~L~v~d~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~~~~~~~~~~~~p~~~~~~~~~~L~~R~DD~~e~i~kR 208 (261)
T PLN02459 129 GVTDIDLVVNLKLREEVLVEKCLGRRICSECGKNFNVADIDLKGEDGRPGIVMPPLLPPPECASKLITRADDTEEVVKAR 208 (261)
T ss_pred hcCCCCEEEEEECCHHHHHHHhhccccccccCccccccccccccccccccccCCCCCCCcccccccccCCCCCHHHHHHH
Confidence 45689999999999999999983 3 211 14554 8999999
Q ss_pred HHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHHHHH
Q psy11031 117 LANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLK 159 (520)
Q Consensus 117 l~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l~~ 159 (520)
|+.|+++|.||++||+++|+++.|||++++++||++|..+|.-
T Consensus 209 L~~Y~~~t~pv~~~Y~~~g~l~~id~~~~~~eV~~~i~~~l~~ 251 (261)
T PLN02459 209 LRVYKEESQPVEDFYRKRGKLLEFELPGGIPETWPRLLQALNL 251 (261)
T ss_pred HHHHHHHhHHHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHhch
Confidence 9999999999999999999999999999999999999999864
No 27
>PRK14528 adenylate kinase; Provisional
Probab=99.93 E-value=4.1e-25 Score=210.97 Aligned_cols=145 Identities=17% Similarity=0.265 Sum_probs=125.3
Q ss_pred cccCcccCcHHHHHHHHHHccC----------CCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHh--
Q psy11031 11 LLDFPSHRNPLKMFNLFVSEEV----------KDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDK-- 78 (520)
Q Consensus 11 ~~~~~~h~s~G~~l~~~i~~G~----------~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~-- 78 (520)
-++++ |+++|+.++..+.+|. ..|.++||+++.+++.+++++.++.+||||||||||.+||+.|.+.
T Consensus 24 ~~~~~-~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~~~g~viDG~Pr~~~qa~~l~~~~~ 102 (186)
T PRK14528 24 RLSIP-QISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADCKNGFLLDGFPRTVEQADALDALLK 102 (186)
T ss_pred HhCCC-eeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCccCcEEEeCCCCCHHHHHHHHHHHH
Confidence 34677 8888888777665542 2566999999999999999877788999999999999999777654
Q ss_pred --cCCcCEEEEEEcCHHHHHHHh-hhCccCCccc--hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHH
Q psy11031 79 --IKTINGVILIAWRQSLLERQI-DYGAKLGHVI--LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADF 153 (520)
Q Consensus 79 --~~~pd~VI~L~~pd~~l~~Rl-~rg~~~~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i 153 (520)
+..+|.||+|+||++++.+|+ .|....+|.| ++++++||..|++++.||++||+++|++++|||++++++||..|
T Consensus 103 ~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~i~~~~~~~~v~~~~ 182 (186)
T PRK14528 103 NEGKSIDKAINLEVPDGELLKRLLGRAEIEGRADDNEATIKNRLDNYNKKTLPLLDFYAAQKKLSQVNGVGSLEEVTSLI 182 (186)
T ss_pred hcCCCCCEEEEEECCHHHHHHHHhcCccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHHhCCCEEEEECCCCHHHHHHHH
Confidence 357999999999999999999 4655567774 89999999999999999999999999999999999999999998
Q ss_pred HHH
Q psy11031 154 RTA 156 (520)
Q Consensus 154 ~~~ 156 (520)
...
T Consensus 183 ~~~ 185 (186)
T PRK14528 183 QKE 185 (186)
T ss_pred HHh
Confidence 764
No 28
>PRK13808 adenylate kinase; Provisional
Probab=99.93 E-value=4.2e-25 Score=226.68 Aligned_cols=153 Identities=14% Similarity=0.233 Sum_probs=130.2
Q ss_pred ccccCcccCcHHHHHHHHHHcc----------CCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHH--
Q psy11031 10 SLLDFPSHRNPLKMFNLFVSEE----------VKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSD-- 77 (520)
Q Consensus 10 ~~~~~~~h~s~G~~l~~~i~~G----------~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~-- 77 (520)
.-++++ |+++|++|++.+.++ +.+|++|||+++++||.++|...++..||||||||||.+||+.|..
T Consensus 22 ~~ygl~-~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~~~G~ILDGFPRt~~QA~~L~~ll 100 (333)
T PRK13808 22 QQYGIV-QLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDAANGFILDGFPRTVPQAEALDALL 100 (333)
T ss_pred HHhCCc-eecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccccCCEEEeCCCCCHHHHHHHHHHH
Confidence 345787 999999998765444 2356699999999999999988778899999999999999976654
Q ss_pred --hcCCcCEEEEEEcCHHHHHHHhh-hCc------cCCccc--hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCCh
Q psy11031 78 --KIKTINGVILIAWRQSLLERQID-YGA------KLGHVI--LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNP 146 (520)
Q Consensus 78 --~~~~pd~VI~L~~pd~~l~~Rl~-rg~------~~~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~ 146 (520)
.+..||+||+|+||++++.+|+. |.. ...|.| ++.+.+||..|++++.||++||.+.+.++.|||++++
T Consensus 101 ~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~~~R~DD~~E~i~kRL~~Y~~~t~PLl~~Y~e~~~lv~IDa~~si 180 (333)
T PRK13808 101 KDKQLKLDAVVELRVNEGALLARVETRVAEMRARGEEVRADDTPEVLAKRLASYRAQTEPLVHYYSEKRKLLTVDGMMTI 180 (333)
T ss_pred HhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCCccCCCCCHHHHHHHHHHHHHHhHHHHHHhhccCcEEEEECCCCH
Confidence 34589999999999999999994 311 124554 8899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcc
Q psy11031 147 VEVYADFRTAVLKILNK 163 (520)
Q Consensus 147 eeV~~~i~~~l~~~~~~ 163 (520)
++||++|+..|...+..
T Consensus 181 EEV~eeI~~~L~~~~~~ 197 (333)
T PRK13808 181 DEVTREIGRVLAAVGAA 197 (333)
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 99999999999987755
No 29
>PRK14529 adenylate kinase; Provisional
Probab=99.92 E-value=9.5e-25 Score=213.54 Aligned_cols=134 Identities=13% Similarity=0.186 Sum_probs=111.4
Q ss_pred cHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHH----hcCCcCEEEEEEcCHHH
Q psy11031 19 NPLKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSD----KIKTINGVILIAWRQSL 94 (520)
Q Consensus 19 s~G~~l~~~i~~G~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~----~~~~pd~VI~L~~pd~~ 94 (520)
.+|..++.+|.+|. +|||+++++++.++|++.+ .+||||||||||.+||+.|.+ .+..|++||+|+||+++
T Consensus 44 ~lg~~i~~~i~~G~----lvpdei~~~lv~~~l~~~~-~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~ 118 (223)
T PRK14529 44 ELGKKAKEYIDRGD----LVPDDITIPMILETLKQDG-KNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREV 118 (223)
T ss_pred hHHHHHHHHHhccC----cchHHHHHHHHHHHHhccC-CCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHH
Confidence 34444455565666 9999999999999998766 899999999999999977654 34689999999999999
Q ss_pred HHHHhh-hC------c-----------------------cCCccc---hHHHHHHHHHHHhc---cchHHHHhhh-----
Q psy11031 95 LERQID-YG------A-----------------------KLGHVI---LSLARMELANFYQN---VTPVTDFFDQ----- 133 (520)
Q Consensus 95 l~~Rl~-rg------~-----------------------~~~r~d---~e~i~~Rl~~Y~~~---t~pvi~~Y~~----- 133 (520)
+++|+. |+ . ...|.| +|++++||+.|+++ +.|+++||++
T Consensus 119 l~~Rl~~R~~c~~~~~~~~~~~~~~p~~~~~~cd~~~~~l~~R~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~ 198 (223)
T PRK14529 119 AKNRIMGRRLCKNDNNHPNNIFIDAIKPDGDVCRVCGGELSTRADDQDEEAINKRHDIYYDTETGTLAAAYFFKDLAAKG 198 (223)
T ss_pred HHHHhhCCccccccCCcccccccCCCcccCCcCcCcCCccccCCCCCcHHHHHHHHHHHHHcccccchHHHHHhhccccc
Confidence 999993 32 1 023664 57999999999998 5589999996
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHH
Q psy11031 134 RGMLIAVNGERNPVEVYADFRTAV 157 (520)
Q Consensus 134 ~~~l~~Ida~~~~eeV~~~i~~~l 157 (520)
+|++++|||++++++||++|...|
T Consensus 199 ~~~~~~id~~~~~~~V~~~i~~~l 222 (223)
T PRK14529 199 STKYIELDGEGSIDEIKETLLKQL 222 (223)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHh
Confidence 889999999999999999998876
No 30
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=99.91 E-value=3.9e-24 Score=207.71 Aligned_cols=146 Identities=15% Similarity=0.337 Sum_probs=124.7
Q ss_pred cccCcccCcHHHHHHHHHHcc----------CCCCCCCCHHHHHHHHHHHHhcCC-CCCcEEEeCCCCCHHhHHHHHHhc
Q psy11031 11 LLDFPSHRNPLKMFNLFVSEE----------VKDFSFLSSKTVTEVLMLEMKMSP-AAKAFLISGYPRNMRDVVEYSDKI 79 (520)
Q Consensus 11 ~~~~~~h~s~G~~l~~~i~~G----------~~~g~lVPdelv~~ll~~~l~~~~-~~~G~ILDGFPRt~~QA~~~~~~~ 79 (520)
-++++ |+++|++++..+.++ .++|++|||+++.+++.++|++.. ..+||||||||||..||+.|.+.+
T Consensus 22 ~~g~~-~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~~~~~~ilDGfPrt~~Qa~~l~~~~ 100 (210)
T TIGR01351 22 KYGLP-HISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQDNENGFILDGFPRTLSQAEALDALL 100 (210)
T ss_pred HcCCC-eeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccCCcEEEeCCCCCHHHHHHHHHHh
Confidence 45777 999999988765543 235669999999999999998743 478999999999999998888777
Q ss_pred C-CcCEEEEEEcCHHHHHHHhh-hC------c---------------------cCCccc--hHHHHHHHHHHHhccchHH
Q psy11031 80 K-TINGVILIAWRQSLLERQID-YG------A---------------------KLGHVI--LSLARMELANFYQNVTPVT 128 (520)
Q Consensus 80 ~-~pd~VI~L~~pd~~l~~Rl~-rg------~---------------------~~~r~d--~e~i~~Rl~~Y~~~t~pvi 128 (520)
. .|+.||+|+||++++.+|+. |+ . ..+|.| ++++++|+..|++++.||+
T Consensus 101 ~~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~~~l~~R~dD~~e~i~~Rl~~y~~~~~~v~ 180 (210)
T TIGR01351 101 KEKIDAVIELDVPDEELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQREDDTEEVVKKRLEVYKEQTEPLI 180 (210)
T ss_pred ccCCCEEEEEECCHHHHHHHHHCCCccCCcCCccccccCCCccCCcCcccCCccccCCCCCHHHHHHHHHHHHHhhHHHH
Confidence 6 79999999999999999994 32 1 013553 8899999999999999999
Q ss_pred HHhhhCCcEEEEeCCCChHHHHHHHHHHH
Q psy11031 129 DFFDQRGMLIAVNGERNPVEVYADFRTAV 157 (520)
Q Consensus 129 ~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l 157 (520)
+||++.++++.|||++++++||+.|.+.|
T Consensus 181 ~~y~~~~~~~~id~~~~~~~v~~~i~~~l 209 (210)
T TIGR01351 181 DYYKKRGILVQIDGNGPIDEVWKRILEAL 209 (210)
T ss_pred HHHHhCCCEEEEECCCCHHHHHHHHHHhh
Confidence 99999999999999999999999999876
No 31
>PRK14526 adenylate kinase; Provisional
Probab=99.91 E-value=7e-24 Score=206.37 Aligned_cols=146 Identities=13% Similarity=0.241 Sum_probs=117.6
Q ss_pred ccCcccCcHHHHHHHHHHcc----------CCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHhcCC
Q psy11031 12 LDFPSHRNPLKMFNLFVSEE----------VKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKT 81 (520)
Q Consensus 12 ~~~~~h~s~G~~l~~~i~~G----------~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~~~~ 81 (520)
+.++ |++.|+.+++.+.++ .++|.+|||+++++++.++|+...+.+||||||||||..||..|.+ ...
T Consensus 24 ~~~~-~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~~~g~ilDGfPR~~~Qa~~l~~-~~~ 101 (211)
T PRK14526 24 LNYY-HISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKNNDNFILDGFPRNINQAKALDK-FLP 101 (211)
T ss_pred hCCc-eeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccccCcEEEECCCCCHHHHHHHHH-hcC
Confidence 3455 666666655433322 1244499999999999999987677899999999999999977665 333
Q ss_pred cCEEEEEEcCHHHHHHHhh-h------Ccc---------------------CCccc--hHHHHHHHHHHHhccchHHHHh
Q psy11031 82 INGVILIAWRQSLLERQID-Y------GAK---------------------LGHVI--LSLARMELANFYQNVTPVTDFF 131 (520)
Q Consensus 82 pd~VI~L~~pd~~l~~Rl~-r------g~~---------------------~~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y 131 (520)
...||+|+||++++++|+. | |.. .+|.| ++++++||+.|+++|.||++||
T Consensus 102 ~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~R~DD~~e~i~~Rl~~y~~~t~pv~~~y 181 (211)
T PRK14526 102 NIKIINFLIDEELLIKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQRKDDKEESLKTRLQEYKLQTKPLIEFY 181 (211)
T ss_pred CCEEEEEECCHHHHHHHHHCCCcccccCCccccccCCCCccCcCCCCCCeeeccCCCCHHHHHHHHHHHHHhhhHHHHHH
Confidence 3578899999999999983 3 211 23554 8999999999999999999999
Q ss_pred hhCCcEEEEeCCCChHHHHHHHHHHHHH
Q psy11031 132 DQRGMLIAVNGERNPVEVYADFRTAVLK 159 (520)
Q Consensus 132 ~~~~~l~~Ida~~~~eeV~~~i~~~l~~ 159 (520)
++.++++.|||++++++||++|...|..
T Consensus 182 ~~~~~~~~id~~~~~~~V~~~i~~~l~~ 209 (211)
T PRK14526 182 SKCNRLNNIDASKDIDEVKKKLIEIISK 209 (211)
T ss_pred HhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence 9999999999999999999999998864
No 32
>PTZ00088 adenylate kinase 1; Provisional
Probab=99.90 E-value=1.4e-23 Score=206.51 Aligned_cols=145 Identities=17% Similarity=0.276 Sum_probs=120.4
Q ss_pred ccccCcccCcHHHHHHHHHHcc----------CCCCCCCCHHHHHHHHHHHHhc--CCCCCcEEEeCCCCCHHhHHHHHH
Q psy11031 10 SLLDFPSHRNPLKMFNLFVSEE----------VKDFSFLSSKTVTEVLMLEMKM--SPAAKAFLISGYPRNMRDVVEYSD 77 (520)
Q Consensus 10 ~~~~~~~h~s~G~~l~~~i~~G----------~~~g~lVPdelv~~ll~~~l~~--~~~~~G~ILDGFPRt~~QA~~~~~ 77 (520)
+-++++ |+++|+++++.+.++ .++|.+|||+++++++.+++.+ .++..||||||||||..||..|.
T Consensus 28 ~~~g~~-~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~~~~g~iLDGfPRt~~Qa~~l~- 105 (229)
T PTZ00088 28 KKENLK-HINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTDDCFKGFILDGFPRNLKQCKELG- 105 (229)
T ss_pred HHhCCc-EEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhccccCceEEEecCCCCHHHHHHHH-
Confidence 445777 888888887665442 2345599999999999999987 45689999999999999996655
Q ss_pred hcCCcCEEEEEEcCHHHHHHHhh-h------Cc-------------------------------cCCccc--hHHHHHHH
Q psy11031 78 KIKTINGVILIAWRQSLLERQID-Y------GA-------------------------------KLGHVI--LSLARMEL 117 (520)
Q Consensus 78 ~~~~pd~VI~L~~pd~~l~~Rl~-r------g~-------------------------------~~~r~d--~e~i~~Rl 117 (520)
....|++||+|++|++++++|+. | |. ...|.| ++++++||
T Consensus 106 ~~~~~~~vi~l~~~~~~~~~Rl~~Rr~~~~~g~~y~~~~~~~~~~~~pp~~~~~~c~~~~~~~~l~~R~DD~~e~i~~Rl 185 (229)
T PTZ00088 106 KITNIDLFVNIYLPRNILIKKLLGRRICNTCNRNFNIAHIRSDPYDMPPILPPADCEGCKGNPKLQKRSDDTEEIVAHRL 185 (229)
T ss_pred hcCCCCEEEEEeCCHHHHHHHHHcCcCCCccCCcceecccccccccCCCCCCCCcccccCCcccccCCCCCCHHHHHHHH
Confidence 45689999999999999999983 2 21 113554 88999999
Q ss_pred HHHHhccchHHHHhhhCCc-EEEE---eCCCChHHHHHHHHHH
Q psy11031 118 ANFYQNVTPVTDFFDQRGM-LIAV---NGERNPVEVYADFRTA 156 (520)
Q Consensus 118 ~~Y~~~t~pvi~~Y~~~~~-l~~I---da~~~~eeV~~~i~~~ 156 (520)
+.|+++|.||++||+++|+ ++.| ||++++++||+.|.+.
T Consensus 186 ~~Y~~~t~pl~~~y~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 228 (229)
T PTZ00088 186 NTYESTNSPIIQFFKNENCNLVDFEITRGLRDFDDFYRIVLQR 228 (229)
T ss_pred HHHHHHhHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHhh
Confidence 9999999999999999999 9888 8999999999988764
No 33
>PRK14531 adenylate kinase; Provisional
Probab=99.89 E-value=1.1e-22 Score=193.57 Aligned_cols=142 Identities=16% Similarity=0.292 Sum_probs=119.7
Q ss_pred ccccCcccCcHHHHHHHHHHccC----------CCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHh-
Q psy11031 10 SLLDFPSHRNPLKMFNLFVSEEV----------KDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDK- 78 (520)
Q Consensus 10 ~~~~~~~h~s~G~~l~~~i~~G~----------~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~- 78 (520)
+-++++ |+++|+.++..+..+. .+|++|||+++..++.++|... ...||||||||||..||..|.+.
T Consensus 24 ~~~g~~-~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~-~~~g~ilDGfpr~~~q~~~~~~~~ 101 (183)
T PRK14531 24 AAHGLR-HLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKAL-NSGGWLLDGFPRTVAQAEALEPLL 101 (183)
T ss_pred HHhCCC-eEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhc-cCCcEEEeCCCCCHHHHHHHHHHH
Confidence 345677 8888888776654442 4566999999999999999753 47899999999999999876653
Q ss_pred ---cCCcCEEEEEEcCHHHHHHHhh-hCccCCcc--chHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHH
Q psy11031 79 ---IKTINGVILIAWRQSLLERQID-YGAKLGHV--ILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYAD 152 (520)
Q Consensus 79 ---~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~--d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~ 152 (520)
...++.||+|+||++++.+|+. | +|. .++.+++|+..|++++.|+++||+++++++.|||++++++||.+
T Consensus 102 ~~~~~~~~~vi~l~~~~~~l~~Rl~~R----~r~dD~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~id~~~~~~~v~~~ 177 (183)
T PRK14531 102 EELKQPIEAVVLLELDDAVLIERLLAR----GRADDNEAVIRNRLEVYREKTAPLIDHYRQRGLLQSVEAQGSIEAITER 177 (183)
T ss_pred HHcCCCCCeEEEEECCHHHHHHHhhcC----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHH
Confidence 3478999999999999999994 5 343 37889999999999999999999999999999999999999999
Q ss_pred HHHHH
Q psy11031 153 FRTAV 157 (520)
Q Consensus 153 i~~~l 157 (520)
|.+.|
T Consensus 178 i~~~l 182 (183)
T PRK14531 178 IEKVL 182 (183)
T ss_pred HHHHh
Confidence 98875
No 34
>PRK14527 adenylate kinase; Provisional
Probab=99.89 E-value=2.3e-22 Score=192.42 Aligned_cols=144 Identities=18% Similarity=0.292 Sum_probs=122.0
Q ss_pred ccCcccCcHHHHHHHHHHcc----------CCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHh---
Q psy11031 12 LDFPSHRNPLKMFNLFVSEE----------VKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDK--- 78 (520)
Q Consensus 12 ~~~~~h~s~G~~l~~~i~~G----------~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~--- 78 (520)
+.++ |++.|+.++..+..+ ..+|.++|++++.+++.+++...++ .||||||||||..||+.|...
T Consensus 30 ~~~~-~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~~-~~~VlDGfpr~~~q~~~~~~~~~~ 107 (191)
T PRK14527 30 LGLK-KLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGMEP-VRVIFDGFPRTLAQAEALDRLLEE 107 (191)
T ss_pred hCCC-CCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCC-CcEEEcCCCCCHHHHHHHHHHHHH
Confidence 3566 888888887655432 1245599999999999999986554 689999999999999766542
Q ss_pred -cCCcCEEEEEEcCHHHHHHHh-hhCccCCccc--hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHH
Q psy11031 79 -IKTINGVILIAWRQSLLERQI-DYGAKLGHVI--LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFR 154 (520)
Q Consensus 79 -~~~pd~VI~L~~pd~~l~~Rl-~rg~~~~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~ 154 (520)
+..++.||+|+||++++.+|+ .|+...+|.| ++.+++|++.|++++.||++||+++++++.|||++++++||++|+
T Consensus 108 ~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd~~~~~~~R~~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~ 187 (191)
T PRK14527 108 LGARLLAVVLLEVPDEELIRRIVERARQEGRSDDNEETVRRRQQVYREQTQPLVDYYEARGHLKRVDGLGTPDEVYARIL 187 (191)
T ss_pred cCCCCCEEEEEECCHHHHHHHHHcCcccCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHH
Confidence 357899999999999999999 5665557774 889999999999999999999999999999999999999999998
Q ss_pred HHH
Q psy11031 155 TAV 157 (520)
Q Consensus 155 ~~l 157 (520)
..|
T Consensus 188 ~~l 190 (191)
T PRK14527 188 KAL 190 (191)
T ss_pred Hhh
Confidence 875
No 35
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.88 E-value=1.4e-21 Score=190.54 Aligned_cols=148 Identities=18% Similarity=0.300 Sum_probs=124.2
Q ss_pred cccCcccCcHHHHHHHHHHcc----------CCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHH---
Q psy11031 11 LLDFPSHRNPLKMFNLFVSEE----------VKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSD--- 77 (520)
Q Consensus 11 ~~~~~~h~s~G~~l~~~i~~G----------~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~--- 77 (520)
-++++ |+++|+++++.+.++ .++|+++||+++.+++.++|++.++.+||||||||||..||+.|.+
T Consensus 23 ~~~~~-~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~~~g~VlDGfPr~~~qa~~l~~~l~ 101 (215)
T PRK00279 23 KYGIP-HISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDCKNGFLLDGFPRTIPQAEALDEMLK 101 (215)
T ss_pred HhCCc-EEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCccCCEEEecCCCCHHHHHHHHHHHH
Confidence 45666 888888877665543 2356699999999999999987777789999999999999987743
Q ss_pred -hcCCcCEEEEEEcCHHHHHHHhh-hC------c---------------------cCCccc--hHHHHHHHHHHHhccch
Q psy11031 78 -KIKTINGVILIAWRQSLLERQID-YG------A---------------------KLGHVI--LSLARMELANFYQNVTP 126 (520)
Q Consensus 78 -~~~~pd~VI~L~~pd~~l~~Rl~-rg------~---------------------~~~r~d--~e~i~~Rl~~Y~~~t~p 126 (520)
.+..++.||+|+||++++.+|+. |. . ...|.| ++.+++||..|++++.|
T Consensus 102 ~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~ 181 (215)
T PRK00279 102 ELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEELIQRADDNEETVRKRLEVYHKQTAP 181 (215)
T ss_pred HcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCcccccCCCCCCcCcCcCCCCcccCCCCCCHHHHHHHHHHHHHhhHH
Confidence 34578999999999999999993 32 1 123443 88999999999999999
Q ss_pred HHHHhhhCCcEEEEeCCCChHHHHHHHHHHHHH
Q psy11031 127 VTDFFDQRGMLIAVNGERNPVEVYADFRTAVLK 159 (520)
Q Consensus 127 vi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l~~ 159 (520)
|++||++.|+++.|||++++++||+.|.+.|+.
T Consensus 182 i~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (215)
T PRK00279 182 LIDYYKKKGKLKKIDGTGSIDEVFADILKALGK 214 (215)
T ss_pred HHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999998864
No 36
>KOG3078|consensus
Probab=99.88 E-value=5.9e-22 Score=192.74 Aligned_cols=150 Identities=19% Similarity=0.384 Sum_probs=127.2
Q ss_pred ccCcccCcHHHHHHHHHHcc----------CCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHhcCC
Q psy11031 12 LDFPSHRNPLKMFNLFVSEE----------VKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKT 81 (520)
Q Consensus 12 ~~~~~h~s~G~~l~~~i~~G----------~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~~~~ 81 (520)
+.+. |+++|+++++.|.+| ++.|++|||++++.++.++|....|++||||||||||..||.++.+.+..
T Consensus 39 ~~~~-hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~~~~~~~ildg~Prt~~qa~~l~~~~~~ 117 (235)
T KOG3078|consen 39 FGVI-HISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENPRCQKGFILDGFPRTVQQAEELLDRIAQ 117 (235)
T ss_pred cCCc-cchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhccccccccccccCCCCcchHHHHHHHHccCC
Confidence 3344 788888777766665 34666999999999888888765599999999999999999999999999
Q ss_pred cCEEEEEEcCHHHHHHHhh-h------Ccc---------------------CCccc--hHHHHHHHHHHHhccchHHHHh
Q psy11031 82 INGVILIAWRQSLLERQID-Y------GAK---------------------LGHVI--LSLARMELANFYQNVTPVTDFF 131 (520)
Q Consensus 82 pd~VI~L~~pd~~l~~Rl~-r------g~~---------------------~~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y 131 (520)
+|.||+|+||++.|++|+. | |.. ..|.| ++++++||..|++++.|+++||
T Consensus 118 ~d~Vi~l~vp~~~L~~ri~~r~ihp~sG~~Yh~~~~pPk~~~~dDitgepL~qr~dD~~e~v~~rL~~y~~~~~pv~eyY 197 (235)
T KOG3078|consen 118 IDLVINLKVPEEVLVDRITGRRIHPASGRVYHLEFNPPKVPGKDDITGEPLIQREDDKPEVVKKRLKAYKEQTKPVLEYY 197 (235)
T ss_pred cceEEEecCCHHHHHHHHhcccccCcccceecccccCCccccccccccChhhcCccccHHHHHHHHHHHhhcchHHHHHH
Confidence 9999999999999999984 3 221 01221 8899999999999999999999
Q ss_pred hhCCcEEEEeCCCChHHHHHHHHHHHHHHhcc
Q psy11031 132 DQRGMLIAVNGERNPVEVYADFRTAVLKILNK 163 (520)
Q Consensus 132 ~~~~~l~~Ida~~~~eeV~~~i~~~l~~~~~~ 163 (520)
+++|++.+++|.. .++||..+...+......
T Consensus 198 ~k~~~l~~~~~~~-~~~v~~~v~~~l~~~~~~ 228 (235)
T KOG3078|consen 198 KKKGVLIEFSGEK-PEEVFPNVYAFLSKKVPE 228 (235)
T ss_pred HhcCeeeeccCcc-hhHhHHHHHHHHHhhhhh
Confidence 9999999999999 999999999999887744
No 37
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=99.87 E-value=5.3e-22 Score=182.72 Aligned_cols=118 Identities=14% Similarity=0.337 Sum_probs=99.0
Q ss_pred ccCcccCcHHHHHHHHHHcc----------CCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHH----
Q psy11031 12 LDFPSHRNPLKMFNLFVSEE----------VKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSD---- 77 (520)
Q Consensus 12 ~~~~~h~s~G~~l~~~i~~G----------~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~---- 77 (520)
++++ |+++|+++++.+.++ .++|++|||++++++|.++|.+..+.+||||||||||.+||..|.+
T Consensus 20 ~~~~-~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~~~~g~ildGfPrt~~Qa~~l~~~~~~ 98 (151)
T PF00406_consen 20 YGLV-HISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPPCNRGFILDGFPRTLEQAEALEEILEE 98 (151)
T ss_dssp HTSE-EEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGGTTTEEEEESB-SSHHHHHHHHHHHHH
T ss_pred cCcc-eechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccceeeeeeccccHHHHHHHHHHHhh
Confidence 4677 999998888776554 3467799999999999999987667999999999999999998888
Q ss_pred hcCCcCEEEEEEcCHHHHHHHhhhCccCCccchHHHHHHHHHHHhccchHHHHhhhCCc
Q psy11031 78 KIKTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGM 136 (520)
Q Consensus 78 ~~~~pd~VI~L~~pd~~l~~Rl~rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~ 136 (520)
....|++||+|+||++.+.+|+.. .+.+.+++||+.|++++.||++||+++|+
T Consensus 99 ~~~~~~~vi~L~~~~~~~~~R~~~------d~~~~i~~Rl~~y~~~~~~i~~~y~~~g~ 151 (151)
T PF00406_consen 99 EGIPPDLVIFLDCPDETLIERLSQ------DNEEVIKKRLEEYRENTEPILDYYKEQGK 151 (151)
T ss_dssp TTSEESEEEEEE--HHHHHHHHHT------GSHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred cccchheeeccccchhhhhhhccc------CCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 778999999999999999999854 44789999999999999999999999874
No 38
>PRK14532 adenylate kinase; Provisional
Probab=99.86 E-value=6.4e-21 Score=181.55 Aligned_cols=148 Identities=16% Similarity=0.194 Sum_probs=125.3
Q ss_pred ccccCcccCcHHHHHHHHHHcc----------CCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHH--
Q psy11031 10 SLLDFPSHRNPLKMFNLFVSEE----------VKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSD-- 77 (520)
Q Consensus 10 ~~~~~~~h~s~G~~l~~~i~~G----------~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~-- 77 (520)
+-++++ |+++|+.+++.+.+| .+.|+++||+++.+++.+++....+..||||||||||..||+.|.+
T Consensus 22 ~~~g~~-~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~vldg~pr~~~q~~~~~~~l 100 (188)
T PRK14532 22 EERGMV-QLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAEAAGGAIFDGFPRTVAQAEALDKML 100 (188)
T ss_pred HHcCCe-EEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCcEEEeCCCCCHHHHHHHHHHH
Confidence 344676 888888887765433 1256699999999999999987778899999999999999987653
Q ss_pred --hcCCcCEEEEEEcCHHHHHHHhh-hCccCCccc--hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHH
Q psy11031 78 --KIKTINGVILIAWRQSLLERQID-YGAKLGHVI--LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYAD 152 (520)
Q Consensus 78 --~~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~ 152 (520)
.+..||.+|+|+||++++.+|+. |+...+|.+ .+.+.+|+..|++++.|+++||++.++++.|||++++++|+++
T Consensus 101 ~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~~r~dd~~~~~~~Rl~~~~~~~~~i~~~y~~~~~~~~id~~~~~eev~~~ 180 (188)
T PRK14532 101 ASRGQKIDVVIRLKVDDEALIERIVKRFEEQGRPDDNPEVFVTRLDAYNAQTAPLLPYYAGQGKLTEVDGMGSIEAVAAS 180 (188)
T ss_pred HhcCCCCCEEEEEECCHHHHHHHHHcCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHH
Confidence 34689999999999999999994 544346664 6788999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy11031 153 FRTAVL 158 (520)
Q Consensus 153 i~~~l~ 158 (520)
|.+.|.
T Consensus 181 I~~~l~ 186 (188)
T PRK14532 181 IDAALE 186 (188)
T ss_pred HHHHHh
Confidence 998875
No 39
>PRK02496 adk adenylate kinase; Provisional
Probab=99.86 E-value=5.8e-21 Score=181.35 Aligned_cols=143 Identities=15% Similarity=0.360 Sum_probs=120.7
Q ss_pred ccCcccCcHHHHHHHHHHccC----------CCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHhc--
Q psy11031 12 LDFPSHRNPLKMFNLFVSEEV----------KDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKI-- 79 (520)
Q Consensus 12 ~~~~~h~s~G~~l~~~i~~G~----------~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~~-- 79 (520)
+.++ |++.|+.++..+.++. .+|.++|++++.+++.++|++.++..||||||||||..||..+.+..
T Consensus 25 ~~~~-~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~g~vldGfPr~~~q~~~l~~~~~~ 103 (184)
T PRK02496 25 LHIP-HISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDAANGWILDGFPRKVTQAAFLDELLQE 103 (184)
T ss_pred hCCc-EEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCCEEEeCCCCCHHHHHHHHHHHHh
Confidence 5676 8888888877654442 25669999999999999998777889999999999999996665432
Q ss_pred --CCcCEEEEEEcCHHHHHHHhh-hCccCCccchHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHH
Q psy11031 80 --KTINGVILIAWRQSLLERQID-YGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTA 156 (520)
Q Consensus 80 --~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~ 156 (520)
..|+.+|+|++|++++.+|+. |+.. ...++.+++|+..|++++.||++||++.+.++.|||++++++|+++|...
T Consensus 104 ~~~~~~~vi~l~~~~~~~~~Rl~~R~~~--dd~~~~~~~r~~~y~~~~~~v~~~~~~~~~~~~Ida~~~~~~V~~~i~~~ 181 (184)
T PRK02496 104 IGQSGERVVNLDVPDDVVVERLLARGRK--DDTEEVIRRRLEVYREQTAPLIDYYRDRQKLLTIDGNQSVEAVTTELKAA 181 (184)
T ss_pred cCCCCCEEEEEeCCHHHHHHHHhcCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHH
Confidence 479999999999999999994 4321 12378899999999999999999999999999999999999999999887
Q ss_pred H
Q psy11031 157 V 157 (520)
Q Consensus 157 l 157 (520)
|
T Consensus 182 l 182 (184)
T PRK02496 182 L 182 (184)
T ss_pred h
Confidence 6
No 40
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.86 E-value=5.6e-21 Score=180.76 Aligned_cols=144 Identities=17% Similarity=0.364 Sum_probs=121.5
Q ss_pred ccCcccCcHHHHHHHHHHccC----------CCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHh---
Q psy11031 12 LDFPSHRNPLKMFNLFVSEEV----------KDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDK--- 78 (520)
Q Consensus 12 ~~~~~h~s~G~~l~~~i~~G~----------~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~--- 78 (520)
++++ |+++|+.++..+.++. .+|.++||+++.+++.+++.... .+||||||||||..|+..|...
T Consensus 23 ~~~~-~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~-~~~~vlDg~p~~~~q~~~~~~~~~~ 100 (183)
T TIGR01359 23 FGFT-HLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADG-SKKFLIDGFPRNEENLEAWEKLMDN 100 (183)
T ss_pred cCCe-EEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccC-CCcEEEeCCCCCHHHHHHHHHHHhc
Confidence 4666 8888888776655332 35669999999999999997644 7899999999999999777643
Q ss_pred cCCcCEEEEEEcCHHHHHHHh-hhCccCCccc--hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHH
Q psy11031 79 IKTINGVILIAWRQSLLERQI-DYGAKLGHVI--LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRT 155 (520)
Q Consensus 79 ~~~pd~VI~L~~pd~~l~~Rl-~rg~~~~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~ 155 (520)
...|+.+|+|+||.+++.+|+ .|+...+|.+ .+.+++|+..|.+++.|+++||++.+.++.|||++++++|+++|.+
T Consensus 101 ~~~~d~~i~l~~~~~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~y~~~~~~i~~~~~~~~~~~~Id~~~~~~~v~~~i~~ 180 (183)
T TIGR01359 101 KVNFKFVLFFDCPEEVMIKRLLKRGQSSGRVDDNIESIKKRFRTYNEQTLPVIEHYENKGKVKEINAEGSVEEVFEDVEK 180 (183)
T ss_pred CCCCCEEEEEECCHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHH
Confidence 357999999999999999999 4554446664 7889999999999999999999998889999999999999999988
Q ss_pred HH
Q psy11031 156 AV 157 (520)
Q Consensus 156 ~l 157 (520)
.+
T Consensus 181 ~l 182 (183)
T TIGR01359 181 IF 182 (183)
T ss_pred Hh
Confidence 75
No 41
>PLN02200 adenylate kinase family protein
Probab=99.85 E-value=1.1e-20 Score=186.73 Aligned_cols=147 Identities=19% Similarity=0.334 Sum_probs=125.3
Q ss_pred cccCcccCcHHHHHHHHHHccC----------CCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHhc-
Q psy11031 11 LLDFPSHRNPLKMFNLFVSEEV----------KDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKI- 79 (520)
Q Consensus 11 ~~~~~~h~s~G~~l~~~i~~G~----------~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~~- 79 (520)
-++++ |++.|+++++.+..+. ..|.++||+++++++.++|... ..+||||||||||..||..|.+..
T Consensus 66 ~~g~~-his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~-~~~~~ILDG~Prt~~q~~~l~~~~~ 143 (234)
T PLN02200 66 TFGFK-HLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESS-DNNKFLIDGFPRTEENRIAFERIIG 143 (234)
T ss_pred HhCCe-EEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC-CCCeEEecCCcccHHHHHHHHHHhc
Confidence 34677 9999999987654331 2466999999999999999753 457999999999999998887654
Q ss_pred CCcCEEEEEEcCHHHHHHHhh-hCccCCccc--hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHH
Q psy11031 80 KTINGVILIAWRQSLLERQID-YGAKLGHVI--LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTA 156 (520)
Q Consensus 80 ~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~ 156 (520)
..||.||+|+||++++.+|+. |+. +|.| ++.+++|++.|++++.|+++||++.+.++.|||++++++||+.|++.
T Consensus 144 ~~pd~vi~Ld~~~e~~~~Rl~~R~~--~r~dd~~e~~~~Rl~~y~~~~~pv~~~y~~~~~~~~IDa~~~~eeV~~~v~~~ 221 (234)
T PLN02200 144 AEPNVVLFFDCPEEEMVKRVLNRNQ--GRVDDNIDTIKKRLKVFNALNLPVIDYYSKKGKLYTINAVGTVDEIFEQVRPI 221 (234)
T ss_pred cCCCEEEEEECCHHHHHHHHHcCcC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHH
Confidence 479999999999999999994 432 4554 78999999999999999999999999999999999999999999999
Q ss_pred HHHHh
Q psy11031 157 VLKIL 161 (520)
Q Consensus 157 l~~~~ 161 (520)
+...+
T Consensus 222 l~~~~ 226 (234)
T PLN02200 222 FAACE 226 (234)
T ss_pred HHHcC
Confidence 98765
No 42
>PRK14530 adenylate kinase; Provisional
Probab=99.83 E-value=9e-20 Score=177.78 Aligned_cols=144 Identities=21% Similarity=0.348 Sum_probs=118.8
Q ss_pred cccCcccCcHHHHHHHHH-----Hcc---------CCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHH
Q psy11031 11 LLDFPSHRNPLKMFNLFV-----SEE---------VKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYS 76 (520)
Q Consensus 11 ~~~~~~h~s~G~~l~~~i-----~~G---------~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~ 76 (520)
.++++ |+++|+.++..+ +.+ ...|.++||+++.+++.++|.. ..||||||||||.+||+.|.
T Consensus 26 ~~~~~-~i~~g~~lr~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~l~~~l~~---~~~~IldG~pr~~~q~~~l~ 101 (215)
T PRK14530 26 EFGVE-HVTTGDALRANKQMDISDMDTEYDTPGEYMDAGELVPDAVVNEIVEEALSD---ADGFVLDGYPRNLEQAEYLE 101 (215)
T ss_pred HhCCe-EEeccHHHHHhccCCcccccchHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCCEEEcCCCCCHHHHHHHH
Confidence 34677 999988887655 111 2356699999999999998864 46999999999999996554
Q ss_pred HhcCCcCEEEEEEcCHHHHHHHhh-hCc---------------------------cCCccc--hHHHHHHHHHHHhccch
Q psy11031 77 DKIKTINGVILIAWRQSLLERQID-YGA---------------------------KLGHVI--LSLARMELANFYQNVTP 126 (520)
Q Consensus 77 ~~~~~pd~VI~L~~pd~~l~~Rl~-rg~---------------------------~~~r~d--~e~i~~Rl~~Y~~~t~p 126 (520)
....++.||+|+||++++.+|+. |+. ...|.| ++.+++||..|++++.|
T Consensus 102 -~~~~~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~rl~~R~dD~~e~i~~Rl~~y~~~~~~ 180 (215)
T PRK14530 102 -SITDLDVVLYLDVSEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGELIQRDDDTEETVRERLDVFEENTEP 180 (215)
T ss_pred -HhcCCCEEEEEeCCHHHHHHHHhCCCcCcccCCccccCCCCCcccccCcccCCcccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 44579999999999999999984 321 113443 88999999999999999
Q ss_pred HHHHhhhCCcEEEEeCCCChHHHHHHHHHHHHH
Q psy11031 127 VTDFFDQRGMLIAVNGERNPVEVYADFRTAVLK 159 (520)
Q Consensus 127 vi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l~~ 159 (520)
|++||+++++++.|||++++++||+.|.+.|+.
T Consensus 181 v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 213 (215)
T PRK14530 181 VIEHYRDQGVLVEVDGEQTPDEVWADIQDAIDD 213 (215)
T ss_pred HHHHHHhCCcEEEEECCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999874
No 43
>PLN02842 nucleotide kinase
Probab=99.82 E-value=1.7e-19 Score=193.64 Aligned_cols=143 Identities=13% Similarity=0.220 Sum_probs=121.7
Q ss_pred cccCcHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhcCC-CCCcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHH
Q psy11031 15 PSHRNPLKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMKMSP-AAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQS 93 (520)
Q Consensus 15 ~~h~s~G~~l~~~i~~G~~~g~lVPdelv~~ll~~~l~~~~-~~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~ 93 (520)
+.++.+|..+++++.+|. +|||+++..++.++++..+ .++||||||||||..||+.|.+....||+||+|+||++
T Consensus 37 ~~~T~iG~~Ire~l~~G~----lvPdeiv~~ll~drl~~~~~~~~G~ILDGfPRt~~Qa~~Le~~~~~PDlVI~LDvpde 112 (505)
T PLN02842 37 SAGTDIGKRAKEFMNSGR----LVPDEIVIAMVTGRLSREDAKEKGWLLDGYPRSFAQAQSLEKLKIRPDIFILLDVPDE 112 (505)
T ss_pred ccCCHHHHHHHHHHhCCC----CCcHHHHHHHHHHHHhCccccCCcEEEeCCCCcHHHHHHHHhcCCCCCEEEEEeCCHH
Confidence 445556666777777777 9999999999999998654 47899999999999999888777778999999999999
Q ss_pred HHHHHhh-h------Ccc-----------------CCccc--hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChH
Q psy11031 94 LLERQID-Y------GAK-----------------LGHVI--LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPV 147 (520)
Q Consensus 94 ~l~~Rl~-r------g~~-----------------~~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~e 147 (520)
++.+|+. | |.. .+|.| ++++++||..|++++.||+++|... ++.|||+++++
T Consensus 113 vlleRl~gR~~dp~tG~iYh~~~~pP~~~~~~~rL~~R~DD~eE~IkkRL~~Y~~~t~pIl~~Y~~r--l~~IDAsqs~E 190 (505)
T PLN02842 113 ILIDRCVGRRLDPVTGKIYHIKNFPPESEEIKARLITRPDDTEEKVKARLQIYKKNAEAILSTYSDI--MVKIDGNRPKE 190 (505)
T ss_pred HHHHHHhccccccccCCccccccCCCCccccccccccCCCCCHHHHHHHHHHHHHHhhhHHHhcCcE--EEEEECCCCHH
Confidence 9999973 2 221 24543 8899999999999999999999864 99999999999
Q ss_pred HHHHHHHHHHHHHhcc
Q psy11031 148 EVYADFRTAVLKILNK 163 (520)
Q Consensus 148 eV~~~i~~~l~~~~~~ 163 (520)
+|+++|++.|...+.+
T Consensus 191 eVfeeI~~iL~~~L~~ 206 (505)
T PLN02842 191 VVFEEISSLLSQIQKD 206 (505)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999988755
No 44
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.80 E-value=7.3e-19 Score=166.78 Aligned_cols=137 Identities=15% Similarity=0.303 Sum_probs=116.7
Q ss_pred ccCcccCcHHHHHHHHHHcc----------CCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHh---
Q psy11031 12 LDFPSHRNPLKMFNLFVSEE----------VKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDK--- 78 (520)
Q Consensus 12 ~~~~~h~s~G~~l~~~i~~G----------~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~--- 78 (520)
+.+| |+|.|++++..+.++ +++|++|||+++..++.++|...+|..|||+||||||+.||..+...
T Consensus 24 ~~i~-hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~~~I~dg~PR~~~qa~~l~r~l~~ 102 (178)
T COG0563 24 LGLP-HLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKAGFILDGFPRTLCQARALKRLLKE 102 (178)
T ss_pred hCCc-EEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccCeEEEeCCCCcHHHHHHHHHHHHH
Confidence 7788 999888877655444 23555999999999999999887776699999999999999666532
Q ss_pred -cCCcCEEEEEEcCHHHHHHHhh-hCccCCccc--hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHH
Q psy11031 79 -IKTINGVILIAWRQSLLERQID-YGAKLGHVI--LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFR 154 (520)
Q Consensus 79 -~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~ 154 (520)
+..++.|+.++++++.+..|+. |.. |.| ++.+++|+..|++.+.|++.||. ++|||.+++++|++++.
T Consensus 103 ~g~~~d~v~~~~~~~~~~~~r~~~r~~---r~dd~~~~~~~R~~~y~~~~~pli~~y~-----~~id~~~~i~~v~~~i~ 174 (178)
T COG0563 103 LGVRLDMVIELDVPEELLLERLLGRRV---REDDNEETVKKRLKVYHEQTAPLIEYYS-----VTIDGSGEIEEVLADIL 174 (178)
T ss_pred cCCCcceEEeeeCCHHHHHHHHhCccc---cccCCHHHHHHHHHHHHhcccchhhhhe-----eeccCCCCHHHHHHHHH
Confidence 4689999999999999999993 432 443 89999999999999999999998 89999999999999998
Q ss_pred HHH
Q psy11031 155 TAV 157 (520)
Q Consensus 155 ~~l 157 (520)
+.+
T Consensus 175 ~~l 177 (178)
T COG0563 175 KAL 177 (178)
T ss_pred Hhh
Confidence 765
No 45
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=99.77 E-value=5.2e-18 Score=161.53 Aligned_cols=137 Identities=16% Similarity=0.316 Sum_probs=113.3
Q ss_pred ccCcccCcHHHHHHHHHHcc----------CCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHhcC-
Q psy11031 12 LDFPSHRNPLKMFNLFVSEE----------VKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIK- 80 (520)
Q Consensus 12 ~~~~~h~s~G~~l~~~i~~G----------~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~~~- 80 (520)
++++ |+++|++++..+..+ ..+|.++|++++.+++..+|......+||||||||||..||..|.+...
T Consensus 23 ~~~~-~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~~~~vldg~Pr~~~q~~~l~~~~~~ 101 (194)
T cd01428 23 YGLP-HISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPDCKKGFILDGFPRTVDQAEALDELLDE 101 (194)
T ss_pred cCCe-EEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCCEEEeCCCCCHHHHHHHHHHHhc
Confidence 4666 788777776655432 1235599999999999999986556789999999999999988887765
Q ss_pred --CcCEEEEEEcCHHHHHHHhh-hCcc-------------------CCcc--chHHHHHHHHHHHhccchHHHHhhhCCc
Q psy11031 81 --TINGVILIAWRQSLLERQID-YGAK-------------------LGHV--ILSLARMELANFYQNVTPVTDFFDQRGM 136 (520)
Q Consensus 81 --~pd~VI~L~~pd~~l~~Rl~-rg~~-------------------~~r~--d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~ 136 (520)
.++++|+|+||++++.+|+. |+.. ..|. +++.+++|+..|++++.|+++||++.++
T Consensus 102 ~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~l~~r~dd~~~~i~~R~~~y~~~~~~i~~~~~~~~~ 181 (194)
T cd01428 102 GIKPDKVIELDVPDEVLIERILGRRICPVSGRVYHLGKDDVTGEPLSQRSDDNEETIKKRLEVYKEQTAPLIDYYKKKGK 181 (194)
T ss_pred CCCCCEEEEEECCHHHHHHHHHcCCcCCCcCCcCCcCCCcccCCccccCCCCCHHHHHHHHHHHHHhHHHHHHHHHhCCC
Confidence 89999999999999999994 3311 1243 3789999999999999999999999999
Q ss_pred EEEEeCCCChHHH
Q psy11031 137 LIAVNGERNPVEV 149 (520)
Q Consensus 137 l~~Ida~~~~eeV 149 (520)
++.|||++++++|
T Consensus 182 ~~~id~~~~~~~v 194 (194)
T cd01428 182 LVEIDGSGDIDEV 194 (194)
T ss_pred EEEEECCCCcCcC
Confidence 9999999999875
No 46
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.74 E-value=7.5e-17 Score=152.60 Aligned_cols=146 Identities=22% Similarity=0.381 Sum_probs=122.1
Q ss_pred cCcccCcHHHHHHHHHHcc----------CCCCCCCCHHHHHHHHHHHHhcC-CCCCcEEEeCCCCCHHhHHHHHHhcCC
Q psy11031 13 DFPSHRNPLKMFNLFVSEE----------VKDFSFLSSKTVTEVLMLEMKMS-PAAKAFLISGYPRNMRDVVEYSDKIKT 81 (520)
Q Consensus 13 ~~~~h~s~G~~l~~~i~~G----------~~~g~lVPdelv~~ll~~~l~~~-~~~~G~ILDGFPRt~~QA~~~~~~~~~ 81 (520)
+++ |++.|+.++..+..+ .++|.++|++++.+++.+++... ....|||||||||+..|+..|...+..
T Consensus 28 g~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~dg~~~~~~q~~~~~~~~~~ 106 (188)
T TIGR01360 28 GFT-HLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALGTSKGFLIDGYPREVKQGEEFERRIGP 106 (188)
T ss_pred CCc-EEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccCcCCeEEEeCCCCCHHHHHHHHHcCCC
Confidence 666 888887776554322 12455999999999999988653 357899999999999999888777778
Q ss_pred cCEEEEEEcCHHHHHHHh-hhCccCCccc--hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHHHH
Q psy11031 82 INGVILIAWRQSLLERQI-DYGAKLGHVI--LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVL 158 (520)
Q Consensus 82 pd~VI~L~~pd~~l~~Rl-~rg~~~~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l~ 158 (520)
|+.+|+|+||.+++.+|+ .|+...+|.+ ++.+.+|+..|++++.|++++|+..+.++.|||++++++|++.|+..++
T Consensus 107 ~~~vi~l~~~~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 186 (188)
T TIGR01360 107 PTLVLYFDCSEDTMVKRLLKRAETSGRVDDNEKTIKKRLETYYKATEPVIAYYETKGKLRKINAEGTVDDVFLQVCTAID 186 (188)
T ss_pred CCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 999999999999999999 4554345664 6789999999999999999999988889999999999999999999886
Q ss_pred H
Q psy11031 159 K 159 (520)
Q Consensus 159 ~ 159 (520)
.
T Consensus 187 ~ 187 (188)
T TIGR01360 187 K 187 (188)
T ss_pred c
Confidence 4
No 47
>PRK13974 thymidylate kinase; Provisional
Probab=99.70 E-value=2.1e-16 Score=153.92 Aligned_cols=177 Identities=13% Similarity=0.135 Sum_probs=124.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeeee--hhhHHhhhhcccccCCcchHHHHhhhh--cCCccchHHHHHHH--H
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQIS--LGKLLRYFANIEDDGEGLNSRIKSSVS--AGDFVNRDVVLDIV--Y 298 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is--~gdLlr~~~~~~~~~t~~g~~i~~~l~--~G~~vPd~lv~~ll--~ 298 (520)
..+|+|+|++||||||||+.|++.+ ...... -.+.+. .....++++|+.|++++. .|...++..+..++ .
T Consensus 3 g~~i~~eG~dGsGKsT~~~~l~~~l-~~~g~~~~~~~~~~---~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a 78 (212)
T PRK13974 3 GKFIVLEGIDGCGKTTQIDHLSKWL-PSSGLMPKGAKLII---TREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAA 78 (212)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HhcCccccCCeeee---eeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHH
Confidence 5789999999999999999999876 321110 012222 223467899999999996 34556776655554 2
Q ss_pred HHHhc----cccCCCcE-EEE-----------eCCCCCH--HHHHHHHhhc---CCCCCEEEecCChhhhh-c--cCCCC
Q psy11031 299 AEMKK----TKYTEADG-IVI-----------DGFPREM--SQLIDFENKY---QIHPPMILIDCSKLVLH-K--GQIDN 354 (520)
Q Consensus 299 ~~l~~----~~~~~~~G-~IL-----------DGFPrt~--~Qae~l~~~~---~~p~~VI~Ld~~~~~~~-r--~R~dD 354 (520)
+|... -......| ||| +|||++. +++..++... ..|+.+|+|+|+++.+. | +|.+|
T Consensus 79 dr~~~~~~~i~~~l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R~dD 158 (212)
T PRK13974 79 DRAQHVSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNRKPD 158 (212)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcccC
Confidence 22110 01111233 677 7888854 4466776532 25778999999998753 2 45555
Q ss_pred CHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHH
Q psy11031 355 SVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIID 408 (520)
Q Consensus 355 ~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~ 408 (520)
.++.|...|++.+.+.+.+|.+.+.+++|||++++++|+++|...|...+.
T Consensus 159 ---~~e~~~~~y~~~v~~~y~~y~~~~~~~~Ida~~~~eeV~~~I~~~l~~~~~ 209 (212)
T PRK13974 159 ---RIEAEGIEFLERVAEGFALIAEERNWKVISADQSIETISNEIKETLLNNFS 209 (212)
T ss_pred ---chhhhhHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 466788899999999999999888999999999999999999999986543
No 48
>PRK01184 hypothetical protein; Provisional
Probab=99.60 E-value=5.6e-14 Score=133.31 Aligned_cols=165 Identities=19% Similarity=0.311 Sum_probs=113.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccc-cCC-----cchHHHHhhhhcCCccchHHHHHHHHH
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIED-DGE-----GLNSRIKSSVSAGDFVNRDVVLDIVYA 299 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~-~~t-----~~g~~i~~~l~~G~~vPd~lv~~ll~~ 299 (520)
++|+|+|+|||||||+|+ +++++ |+.++++||++| ++.. .+. ..|..+..... .+.+ ..+..++..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~-g~~~i~~~d~lr---~~~~~~~~~~~~~~~g~~~~~~~~--~~~~-~~~~~~~~~ 73 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREM-GIPVVVMGDVIR---EEVKKRGLEPTDENIGKVAIDLRK--ELGM-DAVAKRTVP 73 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHc-CCcEEEhhHHHH---HHHHHcCCCCCcHHHHHHHHHHHH--HHCh-HHHHHHHHH
Confidence 479999999999999987 77887 999999999999 4432 122 24555554433 2233 344455556
Q ss_pred HHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhh-----hccCCCC--CHHHHHHHHHHHHHHhHH
Q psy11031 300 EMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVL-----HKGQIDN--SVSAFRRRLELFRERTLP 372 (520)
Q Consensus 300 ~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~-----~r~R~dD--~~e~~~~Rl~~f~~~~~~ 372 (520)
++. . .+...+|+||| |+..|++.+.+.+.....+|+++|+.+.+ .|+|.+| +.+.+.+|.+.... .+
T Consensus 74 ~i~--~-~~~~~vvidg~-r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~~~~r~~~q~~--~~ 147 (184)
T PRK01184 74 KIR--E-KGDEVVVIDGV-RGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSDDPKSWEELEERDERELS--WG 147 (184)
T ss_pred HHH--h-cCCCcEEEeCC-CCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCCChhhHHHHHHHHHHHhc--cC
Confidence 666 2 34678999999 89999999988776556799999999763 2444444 46667777654321 22
Q ss_pred HHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHH
Q psy11031 373 MLRAMDVETRLTIVDGDTQLPQVREEFERVLKKI 406 (520)
Q Consensus 373 l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~ 406 (520)
..+.+...+ ++||.+.+.+++.+++...+...
T Consensus 148 ~~~~~~~ad--~vI~N~~~~~~l~~~v~~~~~~~ 179 (184)
T PRK01184 148 IGEVIALAD--YMIVNDSTLEEFRARVRKLLERI 179 (184)
T ss_pred HHHHHHhcC--EEEeCCCCHHHHHHHHHHHHHHH
Confidence 444554333 35677889999999988776543
No 49
>PRK08356 hypothetical protein; Provisional
Probab=99.59 E-value=2e-14 Score=138.09 Aligned_cols=166 Identities=14% Similarity=0.257 Sum_probs=105.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhh-cccccCC---cchHH----HHhhhhcCCccch----HHH
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFA-NIEDDGE---GLNSR----IKSSVSAGDFVNR----DVV 293 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~-~~~~~~t---~~g~~----i~~~l~~G~~vPd----~lv 293 (520)
.+|+|+|||||||||+|+.|+ ++ |+.|||+|+.++... ......+ ..+.. ...+++.|..+|+ +++
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~-~~-g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~~ 83 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE-EK-GFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDIL 83 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH-HC-CCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHHH
Confidence 579999999999999999996 56 999999999765100 1111111 22222 2567788888885 677
Q ss_pred HHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-c--cCCCC------CHHHHHHHHH
Q psy11031 294 LDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-K--GQIDN------SVSAFRRRLE 364 (520)
Q Consensus 294 ~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r--~R~dD------~~e~~~~Rl~ 364 (520)
.+++.+++. . +. .|||||| |+.+|++.|... ...+|+++|+.+.+. | .|... +.+.++++ .
T Consensus 84 ~~~~~~~~~--~--~~-~ividG~-r~~~q~~~l~~~---~~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~e~~~~~-~ 153 (195)
T PRK08356 84 IRLAVDKKR--N--CK-NIAIDGV-RSRGEVEAIKRM---GGKVIYVEAKPEIRFERLRRRGAEKDKGIKSFEDFLKF-D 153 (195)
T ss_pred HHHHHHHhc--c--CC-eEEEcCc-CCHHHHHHHHhc---CCEEEEEECCHHHHHHHHHhcCCccccccccHHHHHHH-H
Confidence 777766665 1 23 5999999 999999999863 246899999987632 1 33322 33334322 2
Q ss_pred HHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031 365 LFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK 405 (520)
Q Consensus 365 ~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~ 405 (520)
..+.......++. ....++ |+.+.+.+++.++|...+..
T Consensus 154 ~~~~~l~~~~~~~-~~aD~v-I~N~~~~e~~~~~i~~~~~~ 192 (195)
T PRK08356 154 EWEEKLYHTTKLK-DKADFV-IVNEGTLEELRKKVEEILRE 192 (195)
T ss_pred HHHHHhhhhhhHH-HhCcEE-EECCCCHHHHHHHHHHHHHH
Confidence 2222111121222 222233 45578999999998887754
No 50
>PRK13973 thymidylate kinase; Provisional
Probab=99.51 E-value=5e-13 Score=130.33 Aligned_cols=164 Identities=14% Similarity=0.205 Sum_probs=104.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhC--CCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcC--C-c-----------c
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDY--PNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAG--D-F-----------V 288 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~--~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G--~-~-----------v 288 (520)
++.|+|.|++||||||||++|++++ -|+.++.+ .+. .++..|+.+++++..+ . . .
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~--------~~p-~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a~ 73 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT--------REP-GGSPGAEAIRHVLLSGAAELYGPRMEALLFAAA 73 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE--------ECC-CCCchHHHHHHHHcCCCccCCCHHHHHHHHHHH
Confidence 5789999999999999999999874 16667665 121 2344455555444321 1 1 1
Q ss_pred chHHHHHHHHHHHhccccCCCcEEEEeCC----------CCC--HHHHHHHHhhc---CCCCCEEEecCChhhhh-c--c
Q psy11031 289 NRDVVLDIVYAEMKKTKYTEADGIVIDGF----------PRE--MSQLIDFENKY---QIHPPMILIDCSKLVLH-K--G 350 (520)
Q Consensus 289 Pd~lv~~ll~~~l~~~~~~~~~G~ILDGF----------Prt--~~Qae~l~~~~---~~p~~VI~Ld~~~~~~~-r--~ 350 (520)
+.+.+.+++...+. .+.-+|.|+| ++. .+|+..|+... ..|+.||+||||++... | .
T Consensus 74 r~~~~~~~i~~~l~-----~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~ 148 (213)
T PRK13973 74 RDDHVEEVIRPALA-----RGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAK 148 (213)
T ss_pred HHHHHHHHHHHHHH-----CCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHh
Confidence 22334444555555 3445667766 443 45777777543 35788999999998642 1 1
Q ss_pred CC--------C-CCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHH
Q psy11031 351 QI--------D-NSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIID 408 (520)
Q Consensus 351 R~--------d-D~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~ 408 (520)
|. + ++.+.++++.+.|.+.. +.|. +.+++|||++++++|+++|...|...+.
T Consensus 149 R~~~~~~~~~e~~~~~~~~~~~~~y~~l~----~~~~--~~~~~Ida~~~~e~V~~~I~~~i~~~~~ 209 (213)
T PRK13973 149 RRGSDTPDRFEKEDLAFHEKRREAFLQIA----AQEP--ERCVVIDATASPEAVAAEIWAAVDQRLL 209 (213)
T ss_pred ccCCCccCchhhchHHHHHHHHHHHHHHH----HhCC--CcEEEEcCCCCHHHHHHHHHHHHHHHHh
Confidence 21 1 13345556666666533 3332 3588999999999999999999987554
No 51
>PRK03839 putative kinase; Provisional
Probab=99.51 E-value=2.4e-13 Score=128.65 Aligned_cols=147 Identities=12% Similarity=0.205 Sum_probs=94.5
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcccc
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKY 306 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~~ 306 (520)
+|+|+|+|||||||+|++|++++ |+.|++++++++ +.. .+..... .+ +.....+...+. ..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~-~~~~id~d~~~~---~~~-----~~~~~~~---~~-----~~~~~~l~~~~~--~~ 62 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL-GYEYVDLTEFAL---KKG-----IGEEKDD---EM-----EIDFDKLAYFIE--EE 62 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCcEEehhhhhh---hcC-----CcccCCh---hh-----hcCHHHHHHHHH--Hh
Confidence 69999999999999999999998 999999999998 321 1111111 11 122344555554 22
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhc---cCCCCCHHHHHHHH-HHHHHHhHHHHHHhhhCCC
Q psy11031 307 TEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHK---GQIDNSVSAFRRRL-ELFRERTLPMLRAMDVETR 382 (520)
Q Consensus 307 ~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r---~R~dD~~e~~~~Rl-~~f~~~~~~l~~~y~~~~~ 382 (520)
..+.+||+||+... +..++.+|+|+|+.+.+.+ +|... ...+..+. ..+.. ..+.++|.....
T Consensus 63 ~~~~~vIidG~~~~----------l~~~~~vi~L~~~~~~~~~Rl~~R~~~-~~~~~~~~~~~~~~--~~~~~~~~~r~~ 129 (180)
T PRK03839 63 FKEKNVVLDGHLSH----------LLPVDYVIVLRAHPKIIKERLKERGYS-KKKILENVEAELVD--VCLCEALEEKEK 129 (180)
T ss_pred ccCCCEEEEecccc----------ccCCCEEEEEECCHHHHHHHHHHcCCC-HHHHHHHHHHHHHH--HHHHHHHHhcCC
Confidence 23567999998643 2246779999999976432 23211 12222211 11111 134466766777
Q ss_pred EEEEECC-CCHHHHHHHHHHHHHH
Q psy11031 383 LTIVDGD-TQLPQVREEFERVLKK 405 (520)
Q Consensus 383 l~~IDa~-~~~e~V~~~I~~~I~~ 405 (520)
++.||++ .++++|++.|...|.+
T Consensus 130 ~~~Id~~~~s~eev~~~I~~~l~~ 153 (180)
T PRK03839 130 VIEVDTTGKTPEEVVEEILELIKS 153 (180)
T ss_pred EEEEECCCCCHHHHHHHHHHHHhc
Confidence 8999997 6999999998877754
No 52
>PLN02924 thymidylate kinase
Probab=99.47 E-value=1.2e-12 Score=128.47 Aligned_cols=176 Identities=13% Similarity=0.178 Sum_probs=115.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHH-HHHHHH-
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVL-DIVYAE- 300 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~-~ll~~~- 300 (520)
..++.|+|.|.+||||||||+.|++.+ ...++.+ .+++ +...++..|+.+++++..+..+...... -....|
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l-~~~g~~v-~~~~----ep~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~ 87 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFL-KGLGVAA-ELWR----FPDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRW 87 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH-HhcCCCc-eeee----CCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999999987 6665554 3444 3445788999999999766544332211 111112
Q ss_pred -----HhccccCCCcEEEEeCCCC-----------CHHHHHHHHhhcCCCCCEEEecCChhhhhcc-C-CCCCHHHHHHH
Q psy11031 301 -----MKKTKYTEADGIVIDGFPR-----------EMSQLIDFENKYQIHPPMILIDCSKLVLHKG-Q-IDNSVSAFRRR 362 (520)
Q Consensus 301 -----l~~~~~~~~~G~ILDGFPr-----------t~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r~-R-~dD~~e~~~~R 362 (520)
+.. ....+..+|+|+|.- ..++...++..+..|+.+|+||++.+....+ + .++. ++
T Consensus 88 ~~~~~I~p-al~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~~~~~~---~E-- 161 (220)
T PLN02924 88 EKRSLMER-KLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGGYGGER---YE-- 161 (220)
T ss_pred HHHHHHHH-HHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCccc---cc--
Confidence 220 123467899999865 3455666666666788899999999865322 1 1111 11
Q ss_pred HHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHH
Q psy11031 363 LELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDDLE 411 (520)
Q Consensus 363 l~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~~~~ 411 (520)
-..|.+........+.. ..+++|||+.++++|+++|...|...+.+.+
T Consensus 162 ~~~~~~rv~~~Y~~la~-~~~~vIDa~~sieeV~~~I~~~I~~~l~~~~ 209 (220)
T PLN02924 162 KLEFQKKVAKRFQTLRD-SSWKIIDASQSIEEVEKKIREVVLDTVQRCL 209 (220)
T ss_pred cHHHHHHHHHHHHHHhh-cCEEEECCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 12444443333333332 4578899999999999999999988777443
No 53
>PRK13975 thymidylate kinase; Provisional
Probab=99.42 E-value=6.7e-12 Score=119.96 Aligned_cols=169 Identities=12% Similarity=0.099 Sum_probs=104.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHH----
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAE---- 300 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~---- 300 (520)
+.+|+|.|++||||||+|+.|++++ +..+. ..+.++..|+.+++++..+...+..+..-+...+
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l-~~~~~-----------~~~~~~~~g~~ir~~~~~~~~~~~~~~~~f~~~r~~~~ 69 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKL-NAFWT-----------CEPTDGKIGKLIREILSGSKCDKETLALLFAADRVEHV 69 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh-CCCee-----------ECCCCChHHHHHHHHHccCCCCHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999997 64221 1234456788888887766333322221111222
Q ss_pred --HhccccCCCcEEEEeCCCCC-----------HHHHHHHHhhcCCCCCEEEecCChhhhh-----ccCC-CCCHHHHHH
Q psy11031 301 --MKKTKYTEADGIVIDGFPRE-----------MSQLIDFENKYQIHPPMILIDCSKLVLH-----KGQI-DNSVSAFRR 361 (520)
Q Consensus 301 --l~~~~~~~~~G~ILDGFPrt-----------~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-----r~R~-dD~~e~~~~ 361 (520)
+. .......+|+|+|..+ ..+...+......|+.+|||+++.+.+. |+|. .++.+.+++
T Consensus 70 ~~i~--~~~~~~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~ 147 (196)
T PRK13975 70 KEIE--EDLKKRDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRDKEIFEKKEFLKK 147 (196)
T ss_pred HHHH--HHHcCCEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccCccccchHHHHHH
Confidence 22 1112367999998643 1222233333345778999999987642 2222 223344445
Q ss_pred HHHHHHHHhHHHHHHhhhCCCEEEEECC-CCHHHHHHHHHHHHHHHHHH
Q psy11031 362 RLELFRERTLPMLRAMDVETRLTIVDGD-TQLPQVREEFERVLKKIIDD 409 (520)
Q Consensus 362 Rl~~f~~~~~~l~~~y~~~~~l~~IDa~-~~~e~V~~~I~~~I~~~i~~ 409 (520)
..+.|.+... ...|.....+++||++ .++++|+++|...|..++.+
T Consensus 148 ~~~~y~~~~~--~~~~~~~~~~~~Id~~~~~~eev~~~I~~~i~~~~~~ 194 (196)
T PRK13975 148 VQEKYLELAN--NEKFMPKYGFIVIDTTNKSIEEVFNEILNKIKDKIPD 194 (196)
T ss_pred HHHHHHHHHh--hcccCCcCCEEEEECCCCCHHHHHHHHHHHHHHhCCc
Confidence 5555555443 2233333457899996 89999999999999887754
No 54
>PRK08233 hypothetical protein; Provisional
Probab=99.40 E-value=4.8e-12 Score=119.05 Aligned_cols=167 Identities=10% Similarity=0.139 Sum_probs=104.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcc
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKT 304 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~ 304 (520)
+.+|+|.|+|||||||+|+.|++.+ +..++...+.++ ... ....+...+..|... +......+.+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l-~~~~~~~~d~~~---~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~ 72 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL-KNSKALYFDRYD---FDN-----CPEDICKWIDKGANY-SEWVLTPLIKDIQEL 72 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC-CCCceEEECCEE---ccc-----CchhhhhhhhccCCh-hhhhhHHHHHHHHHH
Confidence 5789999999999999999999997 644555555555 111 112334444444433 333444444445411
Q ss_pred ccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-c--cC--CCCCHHHHHHHHHHHHHHhHHHHHH-hh
Q psy11031 305 KYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-K--GQ--IDNSVSAFRRRLELFRERTLPMLRA-MD 378 (520)
Q Consensus 305 ~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r--~R--~dD~~e~~~~Rl~~f~~~~~~l~~~-y~ 378 (520)
.......|||.+||......+ +.. .++.+|||+++.+.+. | .| .+++.+.+.+++..|.....+.... +.
T Consensus 73 ~~~~~~~~vivd~~~~~~~~~-~~~---~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 148 (182)
T PRK08233 73 IAKSNVDYIIVDYPFAYLNSE-MRQ---FIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLNYARPLYLEALH 148 (182)
T ss_pred HcCCCceEEEEeeehhhccHH-HHH---HcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhh
Confidence 111223677766776533332 222 2578999999998632 2 12 2334456778888898887776432 22
Q ss_pred h--CCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031 379 V--ETRLTIVDGDTQLPQVREEFERVLKK 405 (520)
Q Consensus 379 ~--~~~l~~IDa~~~~e~V~~~I~~~I~~ 405 (520)
. ....++||++.++++++++|...|..
T Consensus 149 ~~~~~~~~vId~~~~~e~i~~~i~~~l~~ 177 (182)
T PRK08233 149 TVKPNADIVLDGALSVEEIINQIEEELYR 177 (182)
T ss_pred cCccCCeEEEcCCCCHHHHHHHHHHHHHh
Confidence 1 13457799999999999999988764
No 55
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=99.39 E-value=8.5e-12 Score=121.12 Aligned_cols=176 Identities=15% Similarity=0.245 Sum_probs=111.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcC-C-ccchHHHH-------
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAG-D-FVNRDVVL------- 294 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G-~-~vPd~lv~------- 294 (520)
+..+|+|.|..||||||+++.|++.+ .-..+ +.+- ...+.++++|+.|++++.++ . .-|.....
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l-~~~g~---~v~~---trEP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~ 74 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERL-EERGI---KVVL---TREPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRA 74 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH-HHcCC---eEEE---EeCCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHH
Confidence 36789999999999999999999876 22222 1111 23457799999999999886 3 33332211
Q ss_pred HHHHHHHhccccCCCcEEEEeCCCC------------CHHHHHHHHhhcC---CCCCEEEecCChhhhh-c--cCCCCCH
Q psy11031 295 DIVYAEMKKTKYTEADGIVIDGFPR------------EMSQLIDFENKYQ---IHPPMILIDCSKLVLH-K--GQIDNSV 356 (520)
Q Consensus 295 ~ll~~~l~~~~~~~~~G~ILDGFPr------------t~~Qae~l~~~~~---~p~~VI~Ld~~~~~~~-r--~R~dD~~ 356 (520)
+.+.+.+.- ....+.-+|+|+|-. +.++...+++... .|+.+|+||++++... | .|... .
T Consensus 75 ~h~~~~i~p-al~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~-~ 152 (208)
T COG0125 75 QHLEEVIKP-ALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGEL-R 152 (208)
T ss_pred HHHHHHHHH-hhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCc-c
Confidence 112222330 122357899999853 3556666666666 6888999999998632 2 22221 2
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhC--CCEEEEECCCCHHHHHHHHHHHHHHHHH
Q psy11031 357 SAFRRRLELFRERTLPMLRAMDVE--TRLTIVDGDTQLPQVREEFERVLKKIID 408 (520)
Q Consensus 357 e~~~~Rl~~f~~~~~~l~~~y~~~--~~l~~IDa~~~~e~V~~~I~~~I~~~i~ 408 (520)
+.++..-..|++.+.....-+... +.+++|||++++++|.+.|...|.+.+.
T Consensus 153 ~r~E~~~~~f~~kvr~~Y~~la~~~~~r~~vIda~~~~e~v~~~i~~~l~~~l~ 206 (208)
T COG0125 153 DRFEKEDDEFLEKVREGYLELAAKFPERIIVIDASRPLEEVHEEILKILKERLG 206 (208)
T ss_pred chhhhHHHHHHHHHHHHHHHHHhhCCCeEEEEECCCCHHHHHHHHHHHHHHhhc
Confidence 333333334444444333322222 2589999999999999999999887653
No 56
>PRK06217 hypothetical protein; Validated
Probab=99.38 E-value=1.1e-11 Score=117.92 Aligned_cols=154 Identities=9% Similarity=0.137 Sum_probs=96.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhccc
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTK 305 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~ 305 (520)
.+|+|+|+|||||||+|+.|++++ |+.|++++++++ .. .+.+.+ ...|.+....++...+.
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l-~~~~~~~D~~~~---~~--~~~~~~----------~~~~~~~~~~~~~~~~~--- 62 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERL-DIPHLDTDDYFW---LP--TDPPFT----------TKRPPEERLRLLLEDLR--- 62 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc-CCcEEEcCceee---cc--CCCCcc----------ccCCHHHHHHHHHHHHh---
Confidence 469999999999999999999997 999999999987 22 121111 12344555555555554
Q ss_pred cCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-----c-----cC---CCCCHHH----HHHHHHHHHH
Q psy11031 306 YTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-----K-----GQ---IDNSVSA----FRRRLELFRE 368 (520)
Q Consensus 306 ~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-----r-----~R---~dD~~e~----~~~Rl~~f~~ 368 (520)
.+.+|||||++... .+. .....+.+|||++|.+.+. | ++ ...+.+. +.++...|..
T Consensus 63 --~~~~~vi~G~~~~~--~~~---~~~~~d~~i~Ld~~~~~~~~Rl~~R~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 135 (183)
T PRK06217 63 --PREGWVLSGSALGW--GDP---LEPLFDLVVFLTIPPELRLERLRLREFQRYGNRILPGGDMHKASLEFLEWAASYDT 135 (183)
T ss_pred --cCCCEEEEccHHHH--HHH---HHhhCCEEEEEECCHHHHHHHHHcCcccccCcccCCCCCHHHHHHHHHHHHHhccC
Confidence 34689999998653 222 2233677999999987531 1 11 1111222 3333333332
Q ss_pred ------HhHHHHHHhhh-CCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031 369 ------RTLPMLRAMDV-ETRLTIVDGDTQLPQVREEFERVLKK 405 (520)
Q Consensus 369 ------~~~~l~~~y~~-~~~l~~IDa~~~~e~V~~~I~~~I~~ 405 (520)
.......++.. ...++.+++..+++++.+.|...|..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~i~~~~~~ 179 (183)
T PRK06217 136 AGPEGRSLAAHEQWLADQSCPVLRLDGDLTVEDLLDEVLDHLAS 179 (183)
T ss_pred CCCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHHhc
Confidence 11122223332 24677889999999999988888753
No 57
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.38 E-value=2.9e-12 Score=130.70 Aligned_cols=159 Identities=14% Similarity=0.136 Sum_probs=104.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcc
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKT 304 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~ 304 (520)
+..|++.|+|||||||+|+.|++++.++.++|.+++.+ ........+.. .+...+...-.......+...+.
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~-- 73 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQ----SLFGHGEWGEY--KFTKEKEDLVTKAQEAAALAALK-- 73 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHH----HhcCCCccccc--ccChHHHHHHHHHHHHHHHHHHH--
Confidence 46799999999999999999999965899999966544 22111111110 00001110001222333333333
Q ss_pred ccCCCcEEEEeCCCCCHHHHHHHHhhcCC---CCCEEEecCChhhhh-----ccCCCCCHHHHH---HHHHHHHHHhHHH
Q psy11031 305 KYTEADGIVIDGFPREMSQLIDFENKYQI---HPPMILIDCSKLVLH-----KGQIDNSVSAFR---RRLELFRERTLPM 373 (520)
Q Consensus 305 ~~~~~~G~ILDGFPrt~~Qae~l~~~~~~---p~~VI~Ld~~~~~~~-----r~R~dD~~e~~~---~Rl~~f~~~~~~l 373 (520)
.+.++|||+++.+..+.+.+...... ...+|+|+|+.+.+. |++.....+.++ +|++.|...+.|+
T Consensus 74 ---~g~~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~~~~~i~~~~~~~~~~~~~~~p~ 150 (300)
T PHA02530 74 ---SGKSVIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRGERAVPEDVLRSMFKQMKEYRGLVWPV 150 (300)
T ss_pred ---cCCeEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccCcCCCCHHHHHHHHHHHHHhcCCCCce
Confidence 46789999999999998877654332 233789999887532 323344666666 8999999999999
Q ss_pred HHHhhhCCCEEEEECCCCHHH
Q psy11031 374 LRAMDVETRLTIVDGDTQLPQ 394 (520)
Q Consensus 374 ~~~y~~~~~l~~IDa~~~~e~ 394 (520)
+..|..+..++.+|.+.++.+
T Consensus 151 ~~~~~~~~~~~~~D~dgtl~~ 171 (300)
T PHA02530 151 YTADPGLPKAVIFDIDGTLAK 171 (300)
T ss_pred eccCCCCCCEEEEECCCcCcC
Confidence 888877667888998888665
No 58
>PRK08118 topology modulation protein; Reviewed
Probab=99.31 E-value=1.3e-11 Score=116.15 Aligned_cols=89 Identities=19% Similarity=0.301 Sum_probs=66.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhccc
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTK 305 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~ 305 (520)
++|+|+|+|||||||+|+.|++++ +++++++++++. .. + ...++++.+.++++..+.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l-~~~~~~lD~l~~---~~---~-------------w~~~~~~~~~~~~~~~~~--- 58 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKL-NIPVHHLDALFW---KP---N-------------WEGVPKEEQITVQNELVK--- 58 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh-CCCceecchhhc---cc---C-------------CcCCCHHHHHHHHHHHhc---
Confidence 479999999999999999999998 999999999987 21 1 123555656666655444
Q ss_pred cCCCcEEEEeC-CCCCHHHHHHHHhhcCCCCCEEEecCChhh
Q psy11031 306 YTEADGIVIDG-FPREMSQLIDFENKYQIHPPMILIDCSKLV 346 (520)
Q Consensus 306 ~~~~~G~ILDG-FPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~ 346 (520)
..+||||| |+++++.. + ...+.+|+||+|...
T Consensus 59 ---~~~wVidG~~~~~~~~~--l----~~~d~vi~Ld~p~~~ 91 (167)
T PRK08118 59 ---EDEWIIDGNYGGTMDIR--L----NAADTIIFLDIPRTI 91 (167)
T ss_pred ---CCCEEEeCCcchHHHHH--H----HhCCEEEEEeCCHHH
Confidence 35799999 66665422 2 347889999999764
No 59
>PRK13949 shikimate kinase; Provisional
Probab=99.30 E-value=5.3e-11 Score=112.11 Aligned_cols=151 Identities=15% Similarity=0.193 Sum_probs=97.4
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhh-hcCCccchHHHHHHHHHHHhccc
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSV-SAGDFVNRDVVLDIVYAEMKKTK 305 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l-~~G~~vPd~lv~~ll~~~l~~~~ 305 (520)
+|+|+|+|||||||+++.|++++ |+.+++++.++. +.. +..+.+++ ..|+..-.++-.+++.+ +.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l-~~~~id~D~~i~---~~~------~~~~~~~~~~~g~~~fr~~e~~~l~~-l~--- 68 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL-GLSFIDLDFFIE---NRF------HKTVGDIFAERGEAVFRELERNMLHE-VA--- 68 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-CCCeecccHHHH---HHH------CccHHHHHHHhCHHHHHHHHHHHHHH-HH---
Confidence 69999999999999999999998 999999999987 332 22233333 34553333444444444 33
Q ss_pred cCCCcEEEEe---CCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-------ccCCC---CCHHHHHHHHHHHHHHhHH
Q psy11031 306 YTEADGIVID---GFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-------KGQID---NSVSAFRRRLELFRERTLP 372 (520)
Q Consensus 306 ~~~~~G~ILD---GFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-------r~R~d---D~~e~~~~Rl~~f~~~~~~ 372 (520)
...+|||. |+|.+.++.+.|.+. ..||||+++.+.+. +.|+. .+.+.+. +.+++....
T Consensus 69 --~~~~~vis~Ggg~~~~~~~~~~l~~~----~~vi~L~~~~~~~~~Ri~~~~~~RP~~~~~~~~~~~---~~i~~l~~~ 139 (169)
T PRK13949 69 --EFEDVVISTGGGAPCFFDNMELMNAS----GTTVYLKVSPEVLFVRLRLAKQQRPLLKGKSDEELL---DFIIEALEK 139 (169)
T ss_pred --hCCCEEEEcCCcccCCHHHHHHHHhC----CeEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHH---HHHHHHHHH
Confidence 23467774 688888888888653 56899999987532 23432 1223332 233333344
Q ss_pred HHHHhhhCCCEEEEECCC-CHHHHHHHHHHH
Q psy11031 373 MLRAMDVETRLTIVDGDT-QLPQVREEFERV 402 (520)
Q Consensus 373 l~~~y~~~~~l~~IDa~~-~~e~V~~~I~~~ 402 (520)
...+|+..+ ++||.+. +++++.+.|.+.
T Consensus 140 R~~~Y~~ad--~~id~~~~~~~e~~~~I~~~ 168 (169)
T PRK13949 140 RAPFYRQAK--IIFNADKLEDESQIEQLVQR 168 (169)
T ss_pred HHHHHHhCC--EEEECCCCCHHHHHHHHHHh
Confidence 445676633 5678664 888888887654
No 60
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=99.29 E-value=6.5e-11 Score=113.03 Aligned_cols=166 Identities=13% Similarity=0.212 Sum_probs=93.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCc--cchHHH--------H
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDF--VNRDVV--------L 294 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~--vPd~lv--------~ 294 (520)
.+.|+|.|++||||||+|++|++.+ +..-.. ++. .....+++.|+.+++++..+.. +.+... .
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l-~~~g~~---v~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~ 75 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLL-QENGYD---VLF---TREPGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRH 75 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH-HHcCCe---EEE---EeCCCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999986 331100 111 1123456778888887654332 221111 0
Q ss_pred HHHHHHHhccccCCCcEEEEeCC----------CCC--HHHHHHHHhhcCC--CCCEEEecCChhhhh-c--cCCCCCHH
Q psy11031 295 DIVYAEMKKTKYTEADGIVIDGF----------PRE--MSQLIDFENKYQI--HPPMILIDCSKLVLH-K--GQIDNSVS 357 (520)
Q Consensus 295 ~ll~~~l~~~~~~~~~G~ILDGF----------Prt--~~Qae~l~~~~~~--p~~VI~Ld~~~~~~~-r--~R~dD~~e 357 (520)
..+.+.+.. ....+.-+|+|+| +++ .++...+...+.. |+.+|+|+++.+... | .|.....+
T Consensus 76 ~~~~~~i~~-~l~~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~R~~~r~~~~~~ 154 (195)
T TIGR00041 76 EHLEDKIKP-ALAEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALERLRKRGELDRE 154 (195)
T ss_pred HHHHHHHHH-HHhCCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHhcCCcchH
Confidence 122222220 1123456889965 332 2344556555544 788999999998642 2 23221222
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHH
Q psy11031 358 AFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEF 399 (520)
Q Consensus 358 ~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I 399 (520)
... ..+.+........+.++....+++||++.++++|+++|
T Consensus 155 ~~~-~~~~~~~~~~~y~~~~~~~~~~~~id~~~~~e~v~~~i 195 (195)
T TIGR00041 155 EFE-KLDFFEKVRQRYLELADKEKSIHVIDATNSVEEVEQDI 195 (195)
T ss_pred HHH-HHHHHHHHHHHHHHHHcCCCcEEEEeCCCCHHHHHhhC
Confidence 222 22223333333344444345688999999999998764
No 61
>PRK13976 thymidylate kinase; Provisional
Probab=99.28 E-value=1.6e-10 Score=112.55 Aligned_cols=175 Identities=13% Similarity=0.152 Sum_probs=105.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCC---CeeeehhhHHhhhhcccccCCcchHHHHhhhhcC-CccchHHHHHHHHHH-
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPN---WTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAG-DFVNRDVVLDIVYAE- 300 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g---~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G-~~vPd~lv~~ll~~~- 300 (520)
..|+|.|..|||||||++.|++.+.. ...+. + .....++..|+.|++++... ..-|.....-.+..|
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~---~-----~~eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~ 72 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVV---L-----TREPGGTSFNELVRGLLLSLKNLDKISELLLFIAMRR 72 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceE---E-----eeCCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHH
Confidence 36999999999999999999987611 11111 1 22346788999999988642 233332221111121
Q ss_pred ------HhccccCCCcEEEEeCCCC------------CHHHHHHHHhhc--CCCCCEEEecCChhhhhccCCCCCHHHHH
Q psy11031 301 ------MKKTKYTEADGIVIDGFPR------------EMSQLIDFENKY--QIHPPMILIDCSKLVLHKGQIDNSVSAFR 360 (520)
Q Consensus 301 ------l~~~~~~~~~G~ILDGFPr------------t~~Qae~l~~~~--~~p~~VI~Ld~~~~~~~r~R~dD~~e~~~ 360 (520)
+.. ....++.+|.|+|.- ..++...++... ..|+.+|+|+++.+...++...+. ++
T Consensus 73 ~~~~~~I~p-~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~~~---~e 148 (209)
T PRK13976 73 EHFVKVILP-ALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRADKNG---YE 148 (209)
T ss_pred HHHHHHHHH-HHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhcccc---hh
Confidence 220 123467799999853 334555555433 257889999999987543222221 22
Q ss_pred HHHHHHHHHhHHHHHHh-hh-CCCEEEEEC---CCC---HHHHHHHHHHHHHHHHHHHHh
Q psy11031 361 RRLELFRERTLPMLRAM-DV-ETRLTIVDG---DTQ---LPQVREEFERVLKKIIDDLEN 412 (520)
Q Consensus 361 ~Rl~~f~~~~~~l~~~y-~~-~~~l~~IDa---~~~---~e~V~~~I~~~I~~~i~~~~~ 412 (520)
.+-..|.+........+ .. .+.++.||+ +++ +++|+++|...|...+.++++
T Consensus 149 ~~~~~~l~~v~~~Y~~l~~~~~~~~~~id~~~~~~~~~~~e~v~~~i~~~i~~~~~~~~~ 208 (209)
T PRK13976 149 FMDLEFYDKVRKGFREIVIKNPHRCHVITCIDAKDNIEDINSVHLEIVKLLHAVTKDKLK 208 (209)
T ss_pred cccHHHHHHHHHHHHHHHHhCCCCeEEEECCCCccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 22234444444333333 22 235788998 445 999999999999998877653
No 62
>KOG3327|consensus
Probab=99.25 E-value=6.2e-11 Score=110.97 Aligned_cols=169 Identities=12% Similarity=0.246 Sum_probs=120.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHH-------
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLD------- 295 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~------- 295 (520)
.+...|++.|-.+|||||||.+|.++. +..+....+++ .....+++|+.|..++.+...+|+.++.-
T Consensus 3 ~rg~liV~eGlDrsgKstQ~~~l~~~l--~~~~~~~~l~~----FP~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnRw 76 (208)
T KOG3327|consen 3 IRGALIVLEGLDRSGKSTQCGKLVESL--IPGLDPAELLR----FPERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANRW 76 (208)
T ss_pred CCccEEeeeccccCCceeehhHHHHHH--HhccChHHhhh----cchhcccccHHHHHHHHhccCCcHHHHHHHhccchh
Confidence 356789999999999999999999986 23333334554 55667899999999999888899876643
Q ss_pred ----HHHHHHhccccCCCcEEEEeCCC-----------CCHHHHHHHHhhcCCCCCEEEecCChhhhhc--cCCCC--CH
Q psy11031 296 ----IVYAEMKKTKYTEADGIVIDGFP-----------REMSQLIDFENKYQIHPPMILIDCSKLVLHK--GQIDN--SV 356 (520)
Q Consensus 296 ----ll~~~l~~~~~~~~~G~ILDGFP-----------rt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r--~R~dD--~~ 356 (520)
+|++.+. .+..+|+|+|- .+.+|+..-+..+..|+.|+||+++++.+.+ ++.+. ..
T Consensus 77 e~~~~i~e~l~-----kg~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~gL~KPDlvlfL~v~p~~~a~rggfG~Erye~ 151 (208)
T KOG3327|consen 77 EHVSLIKEKLA-----KGTTLIVDRYSFSGVAYSAAKGLDLDWCKQPDVGLPKPDLVLFLDVSPEDAARRGGFGEERYET 151 (208)
T ss_pred hHHHHHHHHHh-----cCCeEEEecceecchhhhhhcCCCcchhhCCccCCCCCCeEEEEeCCHHHHHHhcCcchhHHHH
Confidence 3344444 46679999984 3467888888888889999999999987543 22222 22
Q ss_pred HHHHHHHHHHHHHhHHHHHHhh-hCCCEEEEECCCCHHHHHHHHHHHHHHHHH
Q psy11031 357 SAFRRRLELFRERTLPMLRAMD-VETRLTIVDGDTQLPQVREEFERVLKKIID 408 (520)
Q Consensus 357 e~~~~Rl~~f~~~~~~l~~~y~-~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~ 408 (520)
..++++...|.+... + +.-.+++|||+.+.++|.+.|.+++++.+.
T Consensus 152 v~fqekv~~~~q~l~------r~e~~~~~~vDAs~sve~V~~~V~~i~e~~~~ 198 (208)
T KOG3327|consen 152 VAFQEKVLVFFQKLL------RKEDLNWHVVDASKSVEKVHQQVRSLVENVLS 198 (208)
T ss_pred HHHHHHHHHHHHHHH------hccCCCeEEEecCccHHHHHHHHHHHHHHhcc
Confidence 234444443333322 2 224689999999999999999988887653
No 63
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.24 E-value=1.5e-10 Score=111.14 Aligned_cols=170 Identities=14% Similarity=0.191 Sum_probs=98.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhc--CCccchHHHHHHHHHH--
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSA--GDFVNRDVVLDIVYAE-- 300 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~--G~~vPd~lv~~ll~~~-- 300 (520)
+.+|+|.|++||||||+|+.|++++ +-... ...+. .+. .++..|+.++..+.. ....+.....-.+..+
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l-~~~~~--~~~~~---~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 75 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELL-EQQGR--DVVFT---REP-GGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQ 75 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH-HHcCC--ceeEe---eCC-CCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999875 22111 11111 222 356678888888863 3333333222112222
Q ss_pred -----HhccccCCCcEEEEeCCCCC------------HHHHHHHHhhc---CCCCCEEEecCChhhhh-c--cCCC-CCH
Q psy11031 301 -----MKKTKYTEADGIVIDGFPRE------------MSQLIDFENKY---QIHPPMILIDCSKLVLH-K--GQID-NSV 356 (520)
Q Consensus 301 -----l~~~~~~~~~G~ILDGFPrt------------~~Qae~l~~~~---~~p~~VI~Ld~~~~~~~-r--~R~d-D~~ 356 (520)
+.. ....+..+|+|+|+-+ .++...+...+ ..|+.+|+|+++++.+. | .|.. +..
T Consensus 76 ~~~~~i~~-~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R~~~~~~ 154 (205)
T PRK00698 76 HLEEVIKP-ALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRARGELDRI 154 (205)
T ss_pred HHHHHHHH-HHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcchh
Confidence 220 1123568999987533 33445555444 45778999999997642 1 2321 111
Q ss_pred ----HHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHH
Q psy11031 357 ----SAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKII 407 (520)
Q Consensus 357 ----e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i 407 (520)
..+.+|+..++ ..+.+.+ ...+++||++.++++|+++|...|...+
T Consensus 155 ~~~~~~~~~~~~~~y---~~~~~~~--~~~~~~Id~~~~~e~v~~~i~~~i~~~~ 204 (205)
T PRK00698 155 EQEGLDFFERVREGY---LELAEKE--PERIVVIDASQSLEEVHEDILAVIKAWL 204 (205)
T ss_pred hhhhHHHHHHHHHHH---HHHHHhC--CCeEEEEeCCCCHHHHHHHHHHHHHHHh
Confidence 12222222211 1222222 2357889999999999999998887653
No 64
>PRK13974 thymidylate kinase; Provisional
Probab=99.22 E-value=1.3e-10 Score=113.32 Aligned_cols=140 Identities=9% Similarity=0.062 Sum_probs=106.8
Q ss_pred CcccCcHHHHHHHHHHccCCCCCCCCHHHHHHHH--HHH---Hh---cCCCCCc-EEE-----------eCCCCCHHh--
Q psy11031 14 FPSHRNPLKMFNLFVSEEVKDFSFLSSKTVTEVL--MLE---MK---MSPAAKA-FLI-----------SGYPRNMRD-- 71 (520)
Q Consensus 14 ~~~h~s~G~~l~~~i~~G~~~g~lVPdelv~~ll--~~~---l~---~~~~~~G-~IL-----------DGFPRt~~Q-- 71 (520)
.|..+.+|+.+++++.... |..+||.++..++ .+| +. .+...+| +|| |||||+..+
T Consensus 44 ~p~~~~~g~~ir~~l~~~~--~~~~~~~~~~~llf~adr~~~~~~~i~~~l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~ 121 (212)
T PRK13974 44 EPGGTLLGKSLRELLLDTS--KDNSPSPLAELLLYAADRAQHVSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLEL 121 (212)
T ss_pred CCCCCchHHHHHHHHcCCC--cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEcCchhhHHHHccccCCCCHHH
Confidence 4556789999999997322 3378998887777 333 11 1112344 888 999998776
Q ss_pred HHHHHH---hcCCcCEEEEEEcCHHHHHHHhhhCccCCccchHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHH
Q psy11031 72 VVEYSD---KIKTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVE 148 (520)
Q Consensus 72 A~~~~~---~~~~pd~VI~L~~pd~~l~~Rl~rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~ee 148 (520)
+..+.. .+..||+||+|+||.+++.+|+.. |.+ +.+.+|...|++.+.++..+|.+++.+++|||++++++
T Consensus 122 ~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~-----R~d-D~~e~~~~~y~~~v~~~y~~y~~~~~~~~Ida~~~~ee 195 (212)
T PRK13974 122 IKNLESIATQGLSPDLTFFLEISVEESIRRRKN-----RKP-DRIEAEGIEFLERVAEGFALIAEERNWKVISADQSIET 195 (212)
T ss_pred HHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHh-----ccc-CchhhhhHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHH
Confidence 333332 234799999999999999999842 211 24567899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy11031 149 VYADFRTAVLKIL 161 (520)
Q Consensus 149 V~~~i~~~l~~~~ 161 (520)
|+++|.++|...+
T Consensus 196 V~~~I~~~l~~~~ 208 (212)
T PRK13974 196 ISNEIKETLLNNF 208 (212)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998755
No 65
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=99.18 E-value=2.4e-10 Score=108.53 Aligned_cols=159 Identities=11% Similarity=0.119 Sum_probs=94.5
Q ss_pred EEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCC-ccchHHHHHHHHH-------HH
Q psy11031 230 VVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGD-FVNRDVVLDIVYA-------EM 301 (520)
Q Consensus 230 vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~-~vPd~lv~~ll~~-------~l 301 (520)
|.|..|||||||+++|++++ .-..+. .+. .....+++.|..+++++..+. .-|.....-.... .+
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l-~~~~~~---~~~---~~~~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I 73 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEAL-KEKGYK---VII---TFPPGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVI 73 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHH-HHTTEE---EEE---EESSTSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTH
T ss_pred CCCCCCCCHHHHHHHHHHHH-HHcCCc---ccc---cCCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999876 222222 111 234567889999999998333 3332222111111 12
Q ss_pred hccccCCCcEEEEeCCC------------CCHHHHHHHHhhcC--CCCCEEEecCChhhhhc---cCCC--CCHHHHHHH
Q psy11031 302 KKTKYTEADGIVIDGFP------------REMSQLIDFENKYQ--IHPPMILIDCSKLVLHK---GQID--NSVSAFRRR 362 (520)
Q Consensus 302 ~~~~~~~~~G~ILDGFP------------rt~~Qae~l~~~~~--~p~~VI~Ld~~~~~~~r---~R~d--D~~e~~~~R 362 (520)
.. ....+..+|+|+|- -+.++...+...+. .|+.+|||+++++...+ .|.. +........
T Consensus 74 ~~-~l~~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~~~~~~~~~~~~ 152 (186)
T PF02223_consen 74 RP-ALKRGKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKRGEKDDEEEEDLEY 152 (186)
T ss_dssp HH-HHHTTSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHTSSTTTTTTHHHHH
T ss_pred HH-HHcCCCEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcCCccchHHHHHHHH
Confidence 20 12246789999882 23566666666655 78889999999986421 2222 222222222
Q ss_pred HHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHH
Q psy11031 363 LELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEF 399 (520)
Q Consensus 363 l~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I 399 (520)
+..+++....+ ++..+.+++|||+.++++|+++|
T Consensus 153 ~~~~~~~y~~l---~~~~~~~~iid~~~~~e~v~~~I 186 (186)
T PF02223_consen 153 LRRVREAYLEL---AKDPNNWVIIDASRSIEEVHEQI 186 (186)
T ss_dssp HHHHHHHHHHH---HHTTTTEEEEETTS-HHHHHHHH
T ss_pred HHHHHHHHHHH---HcCCCCEEEEECCCCHHHHHhhC
Confidence 33333333333 33456799999999999999876
No 66
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.13 E-value=2.6e-09 Score=101.35 Aligned_cols=167 Identities=14% Similarity=0.152 Sum_probs=92.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCC--CCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCC---ccchHHHH------
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYP--NWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGD---FVNRDVVL------ 294 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~--g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~---~vPd~lv~------ 294 (520)
++|+|.|++||||||++++|++.+. |+.++.+. . ...+..|+.++.++..+. ..+.....
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 71 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTR--------E-PGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADR 71 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe--------C-CCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHH
Confidence 3699999999999999999998751 34444331 1 223456777777776542 22221111
Q ss_pred -HHHHHHHhccccCCCcEEEEeCCCCC------------HHHHHHHHh---hcCCCCCEEEecCChhhhhc---cCCCCC
Q psy11031 295 -DIVYAEMKKTKYTEADGIVIDGFPRE------------MSQLIDFEN---KYQIHPPMILIDCSKLVLHK---GQIDNS 355 (520)
Q Consensus 295 -~ll~~~l~~~~~~~~~G~ILDGFPrt------------~~Qae~l~~---~~~~p~~VI~Ld~~~~~~~r---~R~dD~ 355 (520)
..+.+.+.. ....+..+|+|+|+-+ ..+...+.. ....|+.+|+|+++.+.+.+ .|....
T Consensus 72 ~~~~~~~~~~-~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~ 150 (200)
T cd01672 72 AQHVEEVIKP-ALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDD 150 (200)
T ss_pred HHHHHHHHHH-HHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcc
Confidence 111111220 1224678999987632 223333332 23356779999999976421 232221
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhh--CCCEEEEECCCCHHHHHHHHHHHHH
Q psy11031 356 VSAFRRRLELFRERTLPMLRAMDV--ETRLTIVDGDTQLPQVREEFERVLK 404 (520)
Q Consensus 356 ~e~~~~Rl~~f~~~~~~l~~~y~~--~~~l~~IDa~~~~e~V~~~I~~~I~ 404 (520)
.. ......|.+........+.. ...++.||++.+++++++.|...|.
T Consensus 151 ~~--~~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~e~i~~~i~~~i~ 199 (200)
T cd01672 151 RD--EQEGLEFHERVREGYLELAAQEPERIIVIDASQPLEEVLAEILKAIL 199 (200)
T ss_pred hh--hhhhHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHh
Confidence 11 11122233222222221111 1357899999999999999988764
No 67
>PRK07933 thymidylate kinase; Validated
Probab=99.09 E-value=1.1e-09 Score=107.04 Aligned_cols=168 Identities=11% Similarity=0.161 Sum_probs=93.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCC--CCeeeehhhHHhhhhcccc-cCCcchHHHHhhhhcC--Cc--cchHHHHHHHH
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYP--NWTQISLGKLLRYFANIED-DGEGLNSRIKSSVSAG--DF--VNRDVVLDIVY 298 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~--g~~~is~gdLlr~~~~~~~-~~t~~g~~i~~~l~~G--~~--vPd~lv~~ll~ 298 (520)
+.|+|.|+.|||||||+++|++.+. |...+-+ + +.. .+++.|+.+++++... .. -|.....-...
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~----~----~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a 72 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATL----A----FPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFAL 72 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE----e----cCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhh
Confidence 3699999999999999999998751 2222111 1 211 3466788888877632 22 12211111111
Q ss_pred H------HHhccccCCCcEEEEeCCCCCH-----------------HHHHHHHhh---cCCCCCEEEecCChhhhh-c--
Q psy11031 299 A------EMKKTKYTEADGIVIDGFPREM-----------------SQLIDFENK---YQIHPPMILIDCSKLVLH-K-- 349 (520)
Q Consensus 299 ~------~l~~~~~~~~~G~ILDGFPrt~-----------------~Qae~l~~~---~~~p~~VI~Ld~~~~~~~-r-- 349 (520)
+ .|.. ....++.+|+|+|.-+- .+...++.. ...|+.+|+||++++... |
T Consensus 73 ~R~~~~~~I~p-~l~~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~ 151 (213)
T PRK07933 73 DRAGARDELAG-LLAAHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERAR 151 (213)
T ss_pred hhhhhHHHHHH-HHhCCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHH
Confidence 1 1220 12245678999985432 233334431 235788999999998642 1
Q ss_pred cCCCC----CHHHHHHHHHHHHHHhHHHHHH-hhh--CCCEEEEECCCCHHHHHHHHHHHH
Q psy11031 350 GQIDN----SVSAFRRRLELFRERTLPMLRA-MDV--ETRLTIVDGDTQLPQVREEFERVL 403 (520)
Q Consensus 350 ~R~dD----~~e~~~~Rl~~f~~~~~~l~~~-y~~--~~~l~~IDa~~~~e~V~~~I~~~I 403 (520)
.|... ..+.++.. ..|.+........ .+. ...+++|||++++++|++.|...|
T Consensus 152 ~R~~~~~~~~~d~~E~~-~~f~~~v~~~Y~~~~~~~~~~~~~~ida~~~~e~v~~~i~~~~ 211 (213)
T PRK07933 152 RRAAQDADRARDAYERD-DGLQQRTGAVYAELAAQGWGGPWLVVDPDVDPAALAARLAAAL 211 (213)
T ss_pred hhccccCCccccccccc-HHHHHHHHHHHHHHHHhcCCCCeEEeCCCCCHHHHHHHHHHHh
Confidence 22210 11222222 2444444433322 222 236888999999999999998766
No 68
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.09 E-value=2.7e-09 Score=99.95 Aligned_cols=154 Identities=16% Similarity=0.135 Sum_probs=89.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh-cCCccchHHHHHHHHHHHhcc
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS-AGDFVNRDVVLDIVYAEMKKT 304 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~-~G~~vPd~lv~~ll~~~l~~~ 304 (520)
..|+|+|.+||||||+|+.|++++ |+.+++.+.++. ... + ..+.+++. .| .+...+.-...+.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~l-g~~~~d~D~~~~---~~~--g----~~~~~~~~~~g----~~~~~~~e~~~~~-- 66 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQAL-GYRFVDTDQWLQ---STS--N----MTVAEIVEREG----WAGFRARESAALE-- 66 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh-CCCEEEccHHHH---HHh--C----CCHHHHHHHHC----HHHHHHHHHHHHH--
Confidence 469999999999999999999997 999999988877 321 2 22223222 22 2323333223333
Q ss_pred ccCCCcEEEEe-C--CCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-c--cCCC------CCHHHHHHHHHHHHHHhHH
Q psy11031 305 KYTEADGIVID-G--FPREMSQLIDFENKYQIHPPMILIDCSKLVLH-K--GQID------NSVSAFRRRLELFRERTLP 372 (520)
Q Consensus 305 ~~~~~~G~ILD-G--FPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r--~R~d------D~~e~~~~Rl~~f~~~~~~ 372 (520)
... ..++||. | ++......+.+.. ...+|||+++.+.+. | .|.. -....+...+..+.+..
T Consensus 67 ~~~-~~~~vi~~ggg~vl~~~~~~~l~~----~~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~r-- 139 (171)
T PRK03731 67 AVT-APSTVIATGGGIILTEENRHFMRN----NGIVIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEVAEVLAER-- 139 (171)
T ss_pred Hhc-CCCeEEECCCCccCCHHHHHHHHh----CCEEEEEECCHHHHHHHHccccccccCCcCCCCChHHHHHHHHHHH--
Confidence 221 2344554 3 5656555555543 346999999997642 1 1211 00111222233333222
Q ss_pred HHHHhhhCCCEEEEECCCCHHHHHHHHHHHHH
Q psy11031 373 MLRAMDVETRLTIVDGDTQLPQVREEFERVLK 404 (520)
Q Consensus 373 l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~ 404 (520)
..+|.... .++||+++++++|++.|.+.|.
T Consensus 140 -~~~y~~~a-~~~Id~~~~~e~v~~~i~~~l~ 169 (171)
T PRK03731 140 -EALYREVA-HHIIDATQPPSQVVSEILSALA 169 (171)
T ss_pred -HHHHHHhC-CEEEcCCCCHHHHHHHHHHHHh
Confidence 23443322 3789999999999999988774
No 69
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.09 E-value=8.2e-10 Score=105.15 Aligned_cols=161 Identities=17% Similarity=0.270 Sum_probs=107.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCC---CCeeeehhhHHhhhhcccccCCcch----HHHHhhhhcCCccchHHHH----
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYP---NWTQISLGKLLRYFANIEDDGEGLN----SRIKSSVSAGDFVNRDVVL---- 294 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~---g~~~is~gdLlr~~~~~~~~~t~~g----~~i~~~l~~G~~vPd~lv~---- 294 (520)
..|+|+||+||||+|+++.|.+.++ ++.+..+..-.| .....|.... +.+...+++|++++...+.
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r---~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~Y 79 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPR---PGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYY 79 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCC---CCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCc
Confidence 4699999999999999999999853 445555555555 3333344433 6777888888877753332
Q ss_pred ----HHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChh-hhh---ccCCCCCHHHHHHHHHHH
Q psy11031 295 ----DIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKL-VLH---KGQIDNSVSAFRRRLELF 366 (520)
Q Consensus 295 ----~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~-~~~---r~R~dD~~e~~~~Rl~~f 366 (520)
+.+...+. .++.+|+|+.|+...++... ...+.+||+.++.. .+. +.|.+++.+.+++|+...
T Consensus 80 Gt~~~~i~~~~~-----~~~~~ild~~~~~~~~l~~~----~~~~~vIfi~~~s~~~l~~rl~~R~~~~~~~i~~rl~~a 150 (184)
T smart00072 80 GTSKETIRQVAE-----QGKHCLLDIDPQGVKQLRKA----QLYPIVIFIAPPSSEELERRLRGRGTETAERIQKRLAAA 150 (184)
T ss_pred ccCHHHHHHHHH-----cCCeEEEEECHHHHHHHHHh----CCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 24555555 46899999998888887653 23456899986553 332 357788899999999965
Q ss_pred HHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031 367 RERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK 405 (520)
Q Consensus 367 ~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~ 405 (520)
.+.. ..|.. -. .+|+.+ +.++.++++.+.|..
T Consensus 151 ~~~~----~~~~~-fd-~~I~n~-~l~~~~~~l~~~i~~ 182 (184)
T smart00072 151 QKEA----QEYHL-FD-YVIVND-DLEDAYEELKEILEA 182 (184)
T ss_pred HHHH----hhhcc-CC-EEEECc-CHHHHHHHHHHHHHh
Confidence 4432 22311 11 345555 788888888877754
No 70
>PRK04040 adenylate kinase; Provisional
Probab=99.06 E-value=4.6e-09 Score=100.69 Aligned_cols=167 Identities=14% Similarity=0.205 Sum_probs=96.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCC-CCeeeehhhHHhhhhcccc-cCC-cchHHHHhhhhcCCccchHHHHHHHHHHH
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYP-NWTQISLGKLLRYFANIED-DGE-GLNSRIKSSVSAGDFVNRDVVLDIVYAEM 301 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~-g~~~is~gdLlr~~~~~~~-~~t-~~g~~i~~~l~~G~~vPd~lv~~ll~~~l 301 (520)
+++|+|.|.|||||||+|+.|++++. ++.+++.|++++ +... .+- .....++.. ......-+..+...++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~---~~a~~~g~~~~~d~~r~l----~~~~~~~~~~~a~~~i 74 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVML---EVAKEEGLVEHRDEMRKL----PPEEQKELQREAAERI 74 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHH---HHHHHcCCCCCHHHHhhC----ChhhhHHHHHHHHHHH
Confidence 57899999999999999999999964 799999999998 3322 221 111222221 0001112223344444
Q ss_pred hccccCCCcEEEEeCCC--CCHH------HHHHHHhhcCCCCCEEEecCChhhhh--------ccCCCCCHHHHHHHHHH
Q psy11031 302 KKTKYTEADGIVIDGFP--REMS------QLIDFENKYQIHPPMILIDCSKLVLH--------KGQIDNSVSAFRRRLEL 365 (520)
Q Consensus 302 ~~~~~~~~~G~ILDGFP--rt~~------Qae~l~~~~~~p~~VI~Ld~~~~~~~--------r~R~dD~~e~~~~Rl~~ 365 (520)
. .......+||||.. ++.. ....+... .|+.+|+|++++.... |.|..++.+.++.+++.
T Consensus 75 ~--~~~~~~~~~~~~h~~i~~~~g~~~~~~~~~~~~l--~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~es~e~I~~~~~~ 150 (188)
T PRK04040 75 A--EMAGEGPVIVDTHATIKTPAGYLPGLPEWVLEEL--NPDVIVLIEADPDEILMRRLRDETRRRDVETEEDIEEHQEM 150 (188)
T ss_pred H--HhhcCCCEEEeeeeeeccCCCCcCCCCHHHHhhc--CCCEEEEEeCCHHHHHHHHhcccccCCCCCCHHHHHHHHHH
Confidence 4 22334458999832 1111 23334332 5678999999886532 33556678888877765
Q ss_pred HHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHH
Q psy11031 366 FRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVL 403 (520)
Q Consensus 366 f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I 403 (520)
-+..... ..+|...-.++.+|-+...++-.++|...|
T Consensus 151 a~~~a~~-~a~~~g~~~~iI~N~d~~~e~a~~~i~~ii 187 (188)
T PRK04040 151 NRAAAMA-YAVLTGATVKIVENREGLLEEAAEEIVEVL 187 (188)
T ss_pred HHHHHHH-HHHhcCCeEEEEECCCCCHHHHHHHHHHHh
Confidence 4433221 122222223344454444888888877665
No 71
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.03 E-value=4.7e-09 Score=101.15 Aligned_cols=159 Identities=15% Similarity=0.177 Sum_probs=99.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccch---------------
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNR--------------- 290 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd--------------- 290 (520)
.+|.|+|++||||||+|+.|+++| |+.+++++++.+ +....+++.+..+.+.+..+-+.++
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~-g~~~i~~D~~~~---~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~ 77 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQK-GIPILDADIYAR---EALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFN 77 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh-CCeEeeCcHHHH---HHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhC
Confidence 369999999999999999999997 999999999999 6666777777777776643221111
Q ss_pred ---------HHHHHHH----HHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhc-CCCCCEEEecCChhhhh-c--cCCC
Q psy11031 291 ---------DVVLDIV----YAEMKKTKYTEADGIVIDGFPREMSQLIDFENKY-QIHPPMILIDCSKLVLH-K--GQID 353 (520)
Q Consensus 291 ---------~lv~~ll----~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~-~~p~~VI~Ld~~~~~~~-r--~R~d 353 (520)
+++..++ .+++. ......-+|+|- |-- ++..+ ...+.+++++||.+.+. | .|..
T Consensus 78 d~~~~~~l~~i~hP~i~~~~~~~~~--~~~~~~~vv~e~-pll------~E~~~~~~~D~ii~V~a~~e~r~~Rl~~R~g 148 (195)
T PRK14730 78 DPEERRWLENLIHPYVRERFEEELA--QLKSNPIVVLVI-PLL------FEAKLTDLCSEIWVVDCSPEQQLQRLIKRDG 148 (195)
T ss_pred CHHHHHHHHHHHhHHHHHHHHHHHH--hcCCCCEEEEEe-HHh------cCcchHhCCCEEEEEECCHHHHHHHHHHcCC
Confidence 1122222 22333 111123344443 211 12111 13567999999998642 2 3444
Q ss_pred CCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHH
Q psy11031 354 NSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVL 403 (520)
Q Consensus 354 D~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I 403 (520)
-+.+.+.+|+... . +....-. ... ++|+.+.+.+++.+++...+
T Consensus 149 ~s~e~~~~ri~~Q---~-~~~~k~~-~aD-~vI~N~g~~e~l~~qv~~~l 192 (195)
T PRK14730 149 LTEEEAEARINAQ---W-PLEEKVK-LAD-VVLDNSGDLEKLYQQVDQLL 192 (195)
T ss_pred CCHHHHHHHHHhC---C-CHHHHHh-hCC-EEEECCCCHHHHHHHHHHHH
Confidence 5677788887642 1 2222211 122 46899999999999988765
No 72
>PRK04182 cytidylate kinase; Provisional
Probab=99.03 E-value=5e-09 Score=98.21 Aligned_cols=160 Identities=12% Similarity=0.120 Sum_probs=86.9
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccc-cCCcchHHHHhhhhcCCccchHHHHHHHHHHHhccc
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIED-DGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTK 305 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~-~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~ 305 (520)
+|+|.|.|||||||+|+.|++++ |+.+++++++++ .... .+.. +..+...++..|. +...+...+. .
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l-g~~~id~~~~~~---~~~~~~g~~----~~~~~~~~~~~~~--~~~~~~~~~~--~ 69 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL-GLKHVSAGEIFR---ELAKERGMS----LEEFNKYAEEDPE--IDKEIDRRQL--E 69 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-CCcEecHHHHHH---HHHHHcCCC----HHHHHHHhhcCch--HHHHHHHHHH--H
Confidence 69999999999999999999997 999999999998 3321 1211 2222222332221 2222233333 2
Q ss_pred cC-CCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-c--cCCCCCHHHHHHHHHHHHHHh-HHHHHHhhh-
Q psy11031 306 YT-EADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-K--GQIDNSVSAFRRRLELFRERT-LPMLRAMDV- 379 (520)
Q Consensus 306 ~~-~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r--~R~dD~~e~~~~Rl~~f~~~~-~~l~~~y~~- 379 (520)
.. ...+||+||--.. .+.. ..+..+|+|+||.+.+. | .|..-..+...+.+..-.... .-...+|..
T Consensus 70 ~~~~~~~~Vi~g~~~~-----~~~~--~~~~~~V~l~a~~e~~~~Rl~~r~~~~~~~a~~~~~~~d~~~~~~~~~~~~~~ 142 (180)
T PRK04182 70 IAEKEDNVVLEGRLAG-----WMAK--DYADLKIWLKAPLEVRAERIAEREGISVEEALEETIEREESEAKRYKEYYGID 142 (180)
T ss_pred HHhcCCCEEEEEeecc-----eEec--CCCCEEEEEECCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 22 4567999983111 0111 11456899999987642 2 222222222222221111111 112233321
Q ss_pred ----CCCEEEEECC-CCHHHHHHHHHHHHHH
Q psy11031 380 ----ETRLTIVDGD-TQLPQVREEFERVLKK 405 (520)
Q Consensus 380 ----~~~l~~IDa~-~~~e~V~~~I~~~I~~ 405 (520)
...-++||.+ .+++++.+.|...+..
T Consensus 143 ~~~~~~~d~~idt~~~~~~~~~~~I~~~~~~ 173 (180)
T PRK04182 143 IDDLSIYDLVINTSRWDPEGVFDIILTAIDK 173 (180)
T ss_pred ccccccccEEEECCCCCHHHHHHHHHHHHHH
Confidence 1122578865 5899998888887754
No 73
>PRK13947 shikimate kinase; Provisional
Probab=99.01 E-value=9.3e-09 Score=96.07 Aligned_cols=150 Identities=15% Similarity=0.222 Sum_probs=84.4
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh-cCCccchHHHHHHHHHHHhccc
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS-AGDFVNRDVVLDIVYAEMKKTK 305 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~-~G~~vPd~lv~~ll~~~l~~~~ 305 (520)
.|+|+|+|||||||+|+.|++++ |+.+++.+.+++ ... |..+.+++. .|+..-.+...++++ .+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l-g~~~id~d~~~~---~~~------g~~~~~~~~~~ge~~~~~~e~~~~~-~l~--- 68 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL-SFGFIDTDKEIE---KMT------GMTVAEIFEKDGEVRFRSEEKLLVK-KLA--- 68 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh-CCCEEECchhhh---hhc------CCcHHHHHHHhChHHHHHHHHHHHH-HHh---
Confidence 59999999999999999999997 999999999887 331 222333332 233111122222222 222
Q ss_pred cCCCcEEEEe---CCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-c-----cCCCCCHHHHHHHHHHHHHHhHHHHHH
Q psy11031 306 YTEADGIVID---GFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-K-----GQIDNSVSAFRRRLELFRERTLPMLRA 376 (520)
Q Consensus 306 ~~~~~G~ILD---GFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r-----~R~dD~~e~~~~Rl~~f~~~~~~l~~~ 376 (520)
...++||. |++.+......|.+. ..+|||+++.+.+. | .|+.-....+..++....+... .+
T Consensus 69 --~~~~~vi~~g~g~vl~~~~~~~l~~~----~~vv~L~~~~~~l~~Rl~~r~~rp~~~~~~~~~~i~~~~~~r~---~~ 139 (171)
T PRK13947 69 --RLKNLVIATGGGVVLNPENVVQLRKN----GVVICLKARPEVILRRVGKKKSRPLLMVGDPEERIKELLKERE---PF 139 (171)
T ss_pred --hcCCeEEECCCCCcCCHHHHHHHHhC----CEEEEEECCHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHH---HH
Confidence 12233332 245555666666543 35999999987542 1 2211111122333332222222 34
Q ss_pred hhhCCCEEEEE-CCCCHHHHHHHHHH
Q psy11031 377 MDVETRLTIVD-GDTQLPQVREEFER 401 (520)
Q Consensus 377 y~~~~~l~~ID-a~~~~e~V~~~I~~ 401 (520)
|...+ + .|| ++.+++++.+.|..
T Consensus 140 y~~ad-~-~Idt~~~~~~~i~~~I~~ 163 (171)
T PRK13947 140 YDFAD-Y-TIDTGDMTIDEVAEEIIK 163 (171)
T ss_pred HHhcC-E-EEECCCCCHHHHHHHHHH
Confidence 54322 4 455 67899999998887
No 74
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=98.98 E-value=1.1e-08 Score=98.44 Aligned_cols=161 Identities=16% Similarity=0.214 Sum_probs=99.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCc-----cch----------
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDF-----VNR---------- 290 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~-----vPd---------- 290 (520)
.+|.|+|++||||||+|+.|++ + |+.+++++++.+ +....+++....+.+.+..+.. +.-
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~-g~~~i~~D~~~~---~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~ 77 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-L-GAPVIDADAIAH---EVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSD 77 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-c-CCEEEEecHHHH---HHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCC
Confidence 5799999999999999999998 7 999999999999 6665666666666665532211 111
Q ss_pred --------HHHHHHHHHHHhcc--ccCCCcEEEEeCCCCCHHHHHHHHhhc-CCCCCEEEecCChhhhh---ccCCCCCH
Q psy11031 291 --------DVVLDIVYAEMKKT--KYTEADGIVIDGFPREMSQLIDFENKY-QIHPPMILIDCSKLVLH---KGQIDNSV 356 (520)
Q Consensus 291 --------~lv~~ll~~~l~~~--~~~~~~G~ILDGFPrt~~Qae~l~~~~-~~p~~VI~Ld~~~~~~~---r~R~dD~~ 356 (520)
.++...+..++... ......-+|+|.= . .++..+ ..++.|++++||.+.+. ..|...+.
T Consensus 78 ~~~~~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~p-l------l~e~~~~~~~D~vi~V~a~~e~~~~Rl~~R~~~s~ 150 (194)
T PRK00081 78 PEARKKLEAILHPLIREEILEQLQEAESSPYVVLDIP-L------LFENGLEKLVDRVLVVDAPPETQLERLMARDGLSE 150 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccCCEEEEEeh-H------hhcCCchhhCCeEEEEECCHHHHHHHHHHcCCCCH
Confidence 12222222333210 1111234566652 1 122221 23578999999998642 23545677
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHH
Q psy11031 357 SAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLK 404 (520)
Q Consensus 357 e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~ 404 (520)
+.+..|+..+.. ..+.-...+ ++|+.+.+++++.+++...+.
T Consensus 151 e~~~~ri~~Q~~----~~~~~~~ad--~vI~N~g~~e~l~~qv~~i~~ 192 (194)
T PRK00081 151 EEAEAIIASQMP----REEKLARAD--DVIDNNGDLEELRKQVERLLQ 192 (194)
T ss_pred HHHHHHHHHhCC----HHHHHHhCC--EEEECCCCHHHHHHHHHHHHH
Confidence 888888875432 222211122 568999999999998887764
No 75
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.93 E-value=1.8e-08 Score=93.73 Aligned_cols=160 Identities=13% Similarity=0.143 Sum_probs=85.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhc
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKK 303 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~ 303 (520)
.+..|+|+|+|||||||+|+.|++++ |+.+++.+++++ ... +..+...+. ..|...-.+...+++...+.
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l-~~~~~d~d~~~~---~~~--g~~~~~~~~---~~g~~~~~~~~~~~~~~l~~- 72 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL-GYDFIDTDHLIE---ARA--GKSIPEIFE---EEGEAAFRELEEEVLAELLA- 72 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh-CCCEEEChHHHH---HHc--CCCHHHHHH---HHCHHHHHHHHHHHHHHHHh-
Confidence 46789999999999999999999997 999999998887 322 222222211 12331112223333333222
Q ss_pred cccCCCcEEEEeC--CCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-c--c---CCCCCHHHHHHHHHHHHHHhHHHHH
Q psy11031 304 TKYTEADGIVIDG--FPREMSQLIDFENKYQIHPPMILIDCSKLVLH-K--G---QIDNSVSAFRRRLELFRERTLPMLR 375 (520)
Q Consensus 304 ~~~~~~~G~ILDG--FPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r--~---R~dD~~e~~~~Rl~~f~~~~~~l~~ 375 (520)
....+|..| +.-.......|. ....+|||+|+.+.+. | . |.-...+....++..+.....+.
T Consensus 73 ----~~~~vi~~g~~~~~~~~~r~~l~----~~~~~v~l~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~~~~~~~-- 142 (175)
T PRK00131 73 ----RHNLVISTGGGAVLREENRALLR----ERGTVVYLDASFEELLRRLRRDRNRPLLQTNDPKEKLRDLYEERDPL-- 142 (175)
T ss_pred ----cCCCEEEeCCCEeecHHHHHHHH----hCCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHH--
Confidence 112344434 222222333332 2346899999997642 1 1 11000011112233333332232
Q ss_pred HhhhCCCEEEEE-CCCCHHHHHHHHHHHHHH
Q psy11031 376 AMDVETRLTIVD-GDTQLPQVREEFERVLKK 405 (520)
Q Consensus 376 ~y~~~~~l~~ID-a~~~~e~V~~~I~~~I~~ 405 (520)
|..... ++|| .+.+++++.+.|.+.|..
T Consensus 143 -~~~~~d-l~idt~~~~~~e~~~~I~~~v~~ 171 (175)
T PRK00131 143 -YEEVAD-ITVETDGRSPEEVVNEILEKLEA 171 (175)
T ss_pred -HHhhcC-eEEeCCCCCHHHHHHHHHHHHHh
Confidence 322112 3577 568899999988888753
No 76
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=98.93 E-value=2.1e-08 Score=94.14 Aligned_cols=158 Identities=16% Similarity=0.158 Sum_probs=96.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh-cCCccchHHHHHHHHHHHhcc
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS-AGDFVNRDVVLDIVYAEMKKT 304 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~-~G~~vPd~lv~~ll~~~l~~~ 304 (520)
+.|+++|++||||||+.+.||+.+ ++..++++.++. +. .|..|.+++. .|+ +-..++=...+.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L-~~~F~D~D~~Ie---~~------~g~sI~eIF~~~GE----~~FR~~E~~vl~~- 67 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKAL-NLPFIDTDQEIE---KR------TGMSIAEIFEEEGE----EGFRRLETEVLKE- 67 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHc-CCCcccchHHHH---HH------HCcCHHHHHHHHhH----HHHHHHHHHHHHH-
Confidence 469999999999999999999997 999999999998 22 3455666664 355 3333332222221
Q ss_pred ccCCCcEEEEeC--CCCCHHHHHHHHhhcCCCCCEEEecCChhhhhc------cCCCCCHHHHHHHHHHHHHHhHHHHHH
Q psy11031 305 KYTEADGIVIDG--FPREMSQLIDFENKYQIHPPMILIDCSKLVLHK------GQIDNSVSAFRRRLELFRERTLPMLRA 376 (520)
Q Consensus 305 ~~~~~~G~ILDG--FPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r------~R~dD~~e~~~~Rl~~f~~~~~~l~~~ 376 (520)
-......+|-.| ...+.+....|... ..||||+++.+.+.+ .|+--..+.-.+.++...+...++
T Consensus 68 l~~~~~~ViaTGGG~v~~~enr~~l~~~----g~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~~~~l~~L~~~R~~~--- 140 (172)
T COG0703 68 LLEEDNAVIATGGGAVLSEENRNLLKKR----GIVVYLDAPFETLYERLQRDRKRPLLQTEDPREELEELLEERQPL--- 140 (172)
T ss_pred HhhcCCeEEECCCccccCHHHHHHHHhC----CeEEEEeCCHHHHHHHhccccCCCcccCCChHHHHHHHHHHHHHH---
Confidence 111223444443 66666666666654 369999999986431 232111111123344444343444
Q ss_pred hhhCCCEEEEECCCCHHHHHHHHHHHHHHH
Q psy11031 377 MDVETRLTIVDGDTQLPQVREEFERVLKKI 406 (520)
Q Consensus 377 y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~ 406 (520)
|++.. .++++++...+.+.++|...|...
T Consensus 141 Y~e~a-~~~~~~~~~~~~v~~~i~~~l~~~ 169 (172)
T COG0703 141 YREVA-DFIIDTDDRSEEVVEEILEALEGS 169 (172)
T ss_pred HHHhC-cEEecCCCCcHHHHHHHHHHHHHh
Confidence 54422 457888877788888888777653
No 77
>PRK13948 shikimate kinase; Provisional
Probab=98.92 E-value=1.9e-08 Score=95.94 Aligned_cols=160 Identities=14% Similarity=0.072 Sum_probs=95.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh-cCCccchHHHHHHHHHHH
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS-AGDFVNRDVVLDIVYAEM 301 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~-~G~~vPd~lv~~ll~~~l 301 (520)
..+..|+|+|.+||||||+++.|++++ |+.+++++.+++ +. .|..+.+++. .|+ ....++-...+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~l-g~~~iD~D~~ie---~~------~g~si~~if~~~Ge----~~fR~~E~~~l 73 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRAL-MLHFIDTDRYIE---RV------TGKSIPEIFRHLGE----AYFRRCEAEVV 73 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc-CCCEEECCHHHH---HH------HhCCHHHHHHHhCH----HHHHHHHHHHH
Confidence 356789999999999999999999997 999999998887 32 2333444442 343 33333333333
Q ss_pred hccccCCCcEEEEe---CCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhc-----cCCCCCHHHHHHHHHHHHHHhHHH
Q psy11031 302 KKTKYTEADGIVID---GFPREMSQLIDFENKYQIHPPMILIDCSKLVLHK-----GQIDNSVSAFRRRLELFRERTLPM 373 (520)
Q Consensus 302 ~~~~~~~~~G~ILD---GFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r-----~R~dD~~e~~~~Rl~~f~~~~~~l 373 (520)
. ......+.||. |.+-..+....|.+ ...||||+++.+.+.+ .|+--....-..++....+. -
T Consensus 74 ~--~l~~~~~~VIa~GgG~v~~~~n~~~l~~----~g~vV~L~~~~e~l~~Rl~~~~RPll~~~~~~~~l~~l~~~---R 144 (182)
T PRK13948 74 R--RLTRLDYAVISLGGGTFMHEENRRKLLS----RGPVVVLWASPETIYERTRPGDRPLLQVEDPLGRIRTLLNE---R 144 (182)
T ss_pred H--HHHhcCCeEEECCCcEEcCHHHHHHHHc----CCeEEEEECCHHHHHHHhcCCCCCCCCCCChHHHHHHHHHH---H
Confidence 3 11112345555 56666555555554 3468999999875421 23211100011233333333 3
Q ss_pred HHHhhhCCCEEEEECC-CCHHHHHHHHHHHHHHHH
Q psy11031 374 LRAMDVETRLTIVDGD-TQLPQVREEFERVLKKII 407 (520)
Q Consensus 374 ~~~y~~~~~l~~IDa~-~~~e~V~~~I~~~I~~~i 407 (520)
..+|... -++||.+ .+++++.+.|...|...+
T Consensus 145 ~~~Y~~a--~~~i~t~~~~~~ei~~~i~~~l~~~~ 177 (182)
T PRK13948 145 EPVYRQA--TIHVSTDGRRSEEVVEEIVEKLWAWA 177 (182)
T ss_pred HHHHHhC--CEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 3456432 2457765 689999999988887643
No 78
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.90 E-value=5.3e-08 Score=90.56 Aligned_cols=157 Identities=12% Similarity=0.129 Sum_probs=88.6
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccc-cCCcchHHHHhhhhcCCccchHHHHHHHHHHHhccc
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIED-DGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTK 305 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~-~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~ 305 (520)
+|+|.|++||||||+|+.|++++ |+.+++.+++++ +... .+.... .+...... -| .+...+...+. .
T Consensus 2 iI~i~G~~GSGKstia~~la~~l-g~~~~~~~~~~~---~~~~~~g~~~~-~~~~~~~~---~~--~~~~~~~~~i~--~ 69 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL-SLKLISAGDIFR---ELAAKMGLDLI-EFLNYAEE---NP--EIDKKIDRRIH--E 69 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-CCceecHHHHHH---HHHHHcCCCHH-HHHHHHhc---Cc--HHHHHHHHHHH--H
Confidence 69999999999999999999997 999999999988 3221 111111 11111111 11 12333333343 2
Q ss_pred cC-CCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhc---cCCCCCHHHHHHHHHHHHHHhHH-HHHHhhh-
Q psy11031 306 YT-EADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHK---GQIDNSVSAFRRRLELFRERTLP-MLRAMDV- 379 (520)
Q Consensus 306 ~~-~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r---~R~dD~~e~~~~Rl~~f~~~~~~-l~~~y~~- 379 (520)
.. ...+||+||.-... .+ ...++.+|+++||.+.+.+ .|...+.+...+++..-...... ...+|..
T Consensus 70 ~~~~~~~~Vi~g~~~~~----~~---~~~~d~~v~v~a~~~~r~~R~~~R~~~s~~~a~~~~~~~d~~~~~~~~~~~~~~ 142 (171)
T TIGR02173 70 IALKEKNVVLESRLAGW----IV---REYADVKIWLKAPLEVRARRIAKREGKSLTVARSETIEREESEKRRYLKFYGID 142 (171)
T ss_pred HHhcCCCEEEEecccce----ee---cCCcCEEEEEECCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 22 35689999953221 01 1224578999999986431 34334455555544433222222 2234432
Q ss_pred ----CCCEEEEECC-CCHHHHHHHHHHHH
Q psy11031 380 ----ETRLTIVDGD-TQLPQVREEFERVL 403 (520)
Q Consensus 380 ----~~~l~~IDa~-~~~e~V~~~I~~~I 403 (520)
...=+.||.+ .++++ .+.|...+
T Consensus 143 ~~~~~~ydl~i~t~~~~~~~-~~~i~~~~ 170 (171)
T TIGR02173 143 IDDLSIYDLVINTSNWDPNN-VDIILDAL 170 (171)
T ss_pred ccccccccEEEECCCCCHHH-HHHHHHHh
Confidence 1222678866 67887 77776554
No 79
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.90 E-value=2e-08 Score=92.64 Aligned_cols=159 Identities=12% Similarity=0.134 Sum_probs=93.0
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcccc
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKY 306 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~~ 306 (520)
+|.|-|+|||||||+|+.||++| |+.|+|.|.++|+.++ +.|.-+.++-.-++.-|+ +...+..+.. ..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~-gl~~vsaG~iFR~~A~------e~gmsl~ef~~~AE~~p~--iD~~iD~rq~--e~ 70 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL-GLKLVSAGTIFREMAR------ERGMSLEEFSRYAEEDPE--IDKEIDRRQK--EL 70 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh-CCceeeccHHHHHHHH------HcCCCHHHHHHHHhcCch--hhHHHHHHHH--HH
Confidence 68999999999999999999998 9999999999994322 233344444433333332 2222333333 22
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHhhc--CCCCCEEEecCChhhhhc---cCCC-CCHHHHHHHHHHHHHHhHHHHHHhhh-
Q psy11031 307 TEADGIVIDGFPREMSQLIDFENKY--QIHPPMILIDCSKLVLHK---GQID-NSVSAFRRRLELFRERTLPMLRAMDV- 379 (520)
Q Consensus 307 ~~~~G~ILDGFPrt~~Qae~l~~~~--~~p~~VI~Ld~~~~~~~r---~R~d-D~~e~~~~Rl~~f~~~~~~l~~~y~~- 379 (520)
..+..+||+|= |..++ ...+.-|||..|.+++.+ +|.. +-.++++.-.+.=..+.+...++|.=
T Consensus 71 a~~~nvVlegr---------LA~Wi~k~~adlkI~L~Apl~vRa~Ria~REgi~~~~a~~~~~~RE~se~kRY~~~YgID 141 (179)
T COG1102 71 AKEGNVVLEGR---------LAGWIVREYADLKIWLKAPLEVRAERIAKREGIDVDEALAETVEREESEKKRYKKIYGID 141 (179)
T ss_pred HHcCCeEEhhh---------hHHHHhccccceEEEEeCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 23667999884 22222 235667999999987543 3332 22222222111112233444566642
Q ss_pred CCCE----EEEECC-CCHHHHHHHHHHHHHH
Q psy11031 380 ETRL----TIVDGD-TQLPQVREEFERVLKK 405 (520)
Q Consensus 380 ~~~l----~~IDa~-~~~e~V~~~I~~~I~~ 405 (520)
-+.+ ++||.+ -++++|+.-+...+..
T Consensus 142 idDlSiyDLVinTs~~~~~~v~~il~~aid~ 172 (179)
T COG1102 142 IDDLSIYDLVINTSKWDPEEVFLILLDAIDA 172 (179)
T ss_pred CccceeeEEEEecccCCHHHHHHHHHHHHHh
Confidence 1111 457755 5788888877776654
No 80
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=98.89 E-value=2.8e-08 Score=96.19 Aligned_cols=165 Identities=13% Similarity=0.188 Sum_probs=102.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccch---------------
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNR--------------- 290 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd--------------- 290 (520)
.+|.|.|++||||||+|+.|++ + |+.+++.+++.+ +....+++....+.+.+..+-+.|+
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~-g~~vid~D~i~~---~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~ 76 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-E-GFLIVDADQVAR---DIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFAS 76 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-C-CCeEEeCcHHHH---HHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCC
Confidence 3699999999999999999987 6 999999999998 6666777777777776655444332
Q ss_pred --------HH----HHHHHHHHHhccccCCC-cEEEEeCCCCCHHHHHHHHhhc-CCCCCEEEecCChhhhh-c--cCCC
Q psy11031 291 --------DV----VLDIVYAEMKKTKYTEA-DGIVIDGFPREMSQLIDFENKY-QIHPPMILIDCSKLVLH-K--GQID 353 (520)
Q Consensus 291 --------~l----v~~ll~~~l~~~~~~~~-~G~ILDGFPrt~~Qae~l~~~~-~~p~~VI~Ld~~~~~~~-r--~R~d 353 (520)
.+ +.+.+.+++.. ....+ ..+|++ -|-= ++..+ ..++.+|+++||.+... | .|..
T Consensus 77 ~~~~~~le~i~hP~v~~~~~~~~~~-~~~~~~~~vv~e-~plL------~e~g~~~~~D~vi~V~a~~e~ri~Rl~~R~g 148 (200)
T PRK14734 77 PEQTALLNAITHPRIAEETARRFNE-ARAQGAKVAVYD-MPLL------VEKGLDRKMDLVVVVDVDVEERVRRLVEKRG 148 (200)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHH-HHhcCCCEEEEE-eece------eEcCccccCCeEEEEECCHHHHHHHHHHcCC
Confidence 11 11122222221 00111 223333 2211 11111 13577999999998642 2 3434
Q ss_pred CCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHHH
Q psy11031 354 NSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDD 409 (520)
Q Consensus 354 D~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~~ 409 (520)
-+.+.+.+|+..+.... ..... . -.+||.+.+++++.+++...+...+.+
T Consensus 149 ~s~e~~~~ri~~Q~~~~----~k~~~-a-d~vI~N~g~~e~l~~~v~~~~~~~~~~ 198 (200)
T PRK14734 149 LDEDDARRRIAAQIPDD----VRLKA-A-DIVVDNNGTREQLLAQVDGLIAEILSR 198 (200)
T ss_pred CCHHHHHHHHHhcCCHH----HHHHh-C-CEEEECcCCHHHHHHHHHHHHHHHHhc
Confidence 56778888887554431 11222 2 256899999999999999887665544
No 81
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=98.89 E-value=2.9e-08 Score=97.31 Aligned_cols=171 Identities=13% Similarity=0.156 Sum_probs=86.2
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHH------HHhhhhcCC---ccchHHHHHHH
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSR------IKSSVSAGD---FVNRDVVLDIV 297 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~------i~~~l~~G~---~vPd~lv~~ll 297 (520)
+|+|.|..|||||||++.|++.+ +...+....... .......++..++. ++.++.... ........-++
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l-~~~~~~e~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~ 78 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKL-GMKYFPEAGIHY-LDSTTGDGKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQSWMY 78 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHh-CCCeeeccchhc-cccccccccccccccCCCcCHHHHhcCCcccCCcchHHHHHHH
Confidence 48999999999999999999986 775553321110 00111223333332 444544322 12222222222
Q ss_pred HHHHhc------cccCCCcEEEEeCCCCC-HH-----------------HHHHHHhh----cCCCCCEEEecCChhhhhc
Q psy11031 298 YAEMKK------TKYTEADGIVIDGFPRE-MS-----------------QLIDFENK----YQIHPPMILIDCSKLVLHK 349 (520)
Q Consensus 298 ~~~l~~------~~~~~~~G~ILDGFPrt-~~-----------------Qae~l~~~----~~~p~~VI~Ld~~~~~~~r 349 (520)
..|... .....++++|+|+|+-+ .. ....+... +..|+.+|+|+++.+.+.+
T Consensus 79 ~~R~~~~~~~i~~~l~~g~~VI~DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~Pd~~i~l~~~~~~~~~ 158 (219)
T cd02030 79 SSRLLQYSDALEHLLSTGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDVPVPEVQK 158 (219)
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHH
Confidence 223220 01224578999998532 11 11112211 2457789999999976432
Q ss_pred ---cCCCCCHH----HHHHHHHHHHHHhHHHHHHhhhCCCEEEEECC--CCHHHHHHHHHH
Q psy11031 350 ---GQIDNSVS----AFRRRLELFRERTLPMLRAMDVETRLTIVDGD--TQLPQVREEFER 401 (520)
Q Consensus 350 ---~R~dD~~e----~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~--~~~e~V~~~I~~ 401 (520)
.|....+. ..-.++..++... ....|.....+++||++ .+.+.|.+.|..
T Consensus 159 Ri~~R~~~~e~~~~~~yl~~l~~~y~~~--~~~~~~~~~~~i~id~~~~~~~e~i~~~I~~ 217 (219)
T cd02030 159 RIKKRGDPHEMKVTSAYLQDIENAYKKT--FLPEISEHSEVLQYDWTEAGDTEKVVEDIEY 217 (219)
T ss_pred HHHHcCCchhhcccHHHHHHHHHHHHHH--HHHhhccCCCEEEEeCCChhhHHHHHHHHHc
Confidence 23221111 1112222222111 01124344578899999 888888887753
No 82
>PRK06762 hypothetical protein; Provisional
Probab=98.87 E-value=5.7e-08 Score=90.48 Aligned_cols=151 Identities=12% Similarity=0.158 Sum_probs=85.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCC-CCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhc
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYP-NWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKK 303 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~-g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~ 303 (520)
|.+|+|.|+|||||||+|+.|++.+. ++.+++. |.++ ........ ..+. .-.+.+..++...+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~-D~~r---~~l~~~~~---------~~~~-~~~~~~~~~~~~~~~- 66 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQ-DVVR---RDMLRVKD---------GPGN-LSIDLIEQLVRYGLG- 66 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecH-HHHH---HHhccccC---------CCCC-cCHHHHHHHHHHHHh-
Confidence 67899999999999999999999862 4666775 4455 21111000 0010 111233333333333
Q ss_pred cccCCCcEEEEeCCCCCHHH---HHHHHhhcCCCCCEEEecCChhhhh-c--cCCC---CCHHHHHHHHHHHHHHhHHHH
Q psy11031 304 TKYTEADGIVIDGFPREMSQ---LIDFENKYQIHPPMILIDCSKLVLH-K--GQID---NSVSAFRRRLELFRERTLPML 374 (520)
Q Consensus 304 ~~~~~~~G~ILDGFPrt~~Q---ae~l~~~~~~p~~VI~Ld~~~~~~~-r--~R~d---D~~e~~~~Rl~~f~~~~~~l~ 374 (520)
.+..+|+|+.-..... ...+.+....+..+|+|++|.+.+. | .|.. ...+.++..++.+. .+
T Consensus 67 ----~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~~~~~~~~l~~~~~~~~----~~- 137 (166)
T PRK06762 67 ----HCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKSHEFGEDDMRRWWNPHD----TL- 137 (166)
T ss_pred ----CCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccccccCCHHHHHHHHhhcC----Cc-
Confidence 4567999997443332 3344444444557999999976532 2 3322 12444444433321 11
Q ss_pred HHhhhCCCEEEEECCCCHHHHHHHHHHHH
Q psy11031 375 RAMDVETRLTIVDGDTQLPQVREEFERVL 403 (520)
Q Consensus 375 ~~y~~~~~l~~IDa~~~~e~V~~~I~~~I 403 (520)
..+ + .+.++.+.++++|.++|...+
T Consensus 138 ~~~---~-~~~~~~~~~~~~v~~~i~~~~ 162 (166)
T PRK06762 138 GVI---G-ETIFTDNLSLKDIFDAILTDI 162 (166)
T ss_pred CCC---C-eEEecCCCCHHHHHHHHHHHh
Confidence 111 2 355677789999999988765
No 83
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.87 E-value=2.5e-08 Score=96.85 Aligned_cols=170 Identities=11% Similarity=0.124 Sum_probs=95.3
Q ss_pred CCCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcc----hHHHHhhhhcCCccchH-----
Q psy11031 221 ERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGL----NSRIKSSVSAGDFVNRD----- 291 (520)
Q Consensus 221 ~~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~----g~~i~~~l~~G~~vPd~----- 291 (520)
.+..+..|+|+||+||||||+++.|.+..+.+ ++....--|..-.....+..+ -..+...+.+|..+.-.
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~-~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~ 87 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRERKLPF-HFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGN 87 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhcCCcc-cccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCc
Confidence 35578899999999999999999998653222 111111111000010111111 11233334344333210
Q ss_pred HH---HHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChh--h-hh--ccCCCCCHHHHHHHH
Q psy11031 292 VV---LDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKL--V-LH--KGQIDNSVSAFRRRL 363 (520)
Q Consensus 292 lv---~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~--~-~~--r~R~dD~~e~~~~Rl 363 (520)
.. ..-+...+. .++.+|+|.= ..-+..+.+.. ++.++++.++.. . .. +.|.+++.+.+.+|+
T Consensus 88 ~YGt~~~~i~~~~~-----~g~~vi~~~~---~~g~~~l~~~~--pd~~~if~~pps~e~l~~Rl~~R~~~~~~~~~~Rl 157 (206)
T PRK14738 88 YYGVPKAPVRQALA-----SGRDVIVKVD---VQGAASIKRLV--PEAVFIFLAPPSMDELTRRLELRRTESPEELERRL 157 (206)
T ss_pred eecCCHHHHHHHHH-----cCCcEEEEcC---HHHHHHHHHhC--CCeEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 00 122333333 3556888863 45555565543 566666666432 2 22 356677888899999
Q ss_pred HHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHH
Q psy11031 364 ELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKI 406 (520)
Q Consensus 364 ~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~ 406 (520)
..+........ ...++.||++.++++++++|...|...
T Consensus 158 ~~~~~e~~~~~-----~~~~~iId~~~~~e~v~~~i~~~l~~~ 195 (206)
T PRK14738 158 ATAPLELEQLP-----EFDYVVVNPEDRLDEAVAQIMAIISAE 195 (206)
T ss_pred HHHHHHHhccc-----CCCEEEECCCCCHHHHHHHHHHHHHHH
Confidence 87765543211 124778999999999999999888754
No 84
>PRK00625 shikimate kinase; Provisional
Probab=98.86 E-value=4.7e-08 Score=92.54 Aligned_cols=104 Identities=12% Similarity=0.094 Sum_probs=63.3
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh-cCCccchHHHHHHHHHHHhccc
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS-AGDFVNRDVVLDIVYAEMKKTK 305 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~-~G~~vPd~lv~~ll~~~l~~~~ 305 (520)
.|+|+|.|||||||+|+.|++++ |+.+++++++++ +.... .....+.++++ .|+ +.+.++-...+. .
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l-~~~~id~D~~I~---~~~g~--~~~~~i~eif~~~Ge----~~fr~~E~~~l~--~ 69 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL-SLPFFDTDDLIV---SNYHG--ALYSSPKEIYQAYGE----EGFCREEFLALT--S 69 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCCEEEhhHHHH---HHhCC--CCCCCHHHHHHHHCH----HHHHHHHHHHHH--H
Confidence 59999999999999999999997 999999999998 33211 01123444442 343 223322222233 2
Q ss_pred cCCCcEEEEeC--CCCCHHHHHHHHhhcCCCCCEEEecCChhh
Q psy11031 306 YTEADGIVIDG--FPREMSQLIDFENKYQIHPPMILIDCSKLV 346 (520)
Q Consensus 306 ~~~~~G~ILDG--FPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~ 346 (520)
......+|..| .+-..+....| .....||||+++.+.
T Consensus 70 l~~~~~VIs~GGg~~~~~e~~~~l----~~~~~Vv~L~~~~e~ 108 (173)
T PRK00625 70 LPVIPSIVALGGGTLMIEPSYAHI----RNRGLLVLLSLPIAT 108 (173)
T ss_pred hccCCeEEECCCCccCCHHHHHHH----hcCCEEEEEECCHHH
Confidence 22233455454 44444444444 233569999999764
No 85
>PRK07261 topology modulation protein; Provisional
Probab=98.86 E-value=7.3e-09 Score=97.70 Aligned_cols=91 Identities=19% Similarity=0.209 Sum_probs=64.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhccc
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTK 305 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~ 305 (520)
.+|+|+|+|||||||+|+.|++.+ |+.+++.+.+.. .. + ....+.+.....+...+.
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~-~~~~i~~D~~~~---~~---~-------------~~~~~~~~~~~~~~~~~~--- 57 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHY-NCPVLHLDTLHF---QP---N-------------WQERDDDDMIADISNFLL--- 57 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHh-CCCeEecCCEEe---cc---c-------------cccCCHHHHHHHHHHHHh---
Confidence 369999999999999999999997 999999977654 11 1 012233445555555555
Q ss_pred cCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhh
Q psy11031 306 YTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLV 346 (520)
Q Consensus 306 ~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~ 346 (520)
+..|||||...+..+...+.. .+.+|+|++|...
T Consensus 58 ---~~~wIidg~~~~~~~~~~l~~----ad~vI~Ld~p~~~ 91 (171)
T PRK07261 58 ---KHDWIIDGNYSWCLYEERMQE----ADQIIFLNFSRFN 91 (171)
T ss_pred ---CCCEEEcCcchhhhHHHHHHH----CCEEEEEcCCHHH
Confidence 234999998877555555553 4779999999864
No 86
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=98.85 E-value=1.3e-08 Score=98.39 Aligned_cols=158 Identities=13% Similarity=0.108 Sum_probs=88.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcch-HHHHhhhhcCCccchHHHHHHHH----
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLN-SRIKSSVSAGDFVNRDVVLDIVY---- 298 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g-~~i~~~l~~G~~vPd~lv~~ll~---- 298 (520)
.+.+|+|.|.|||||||+|+.|++++ |+.++..+|++| +........+ ...+..++.|+.++++....++.
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~-~~~~~~~~D~~r---~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~ 77 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHR-AIDIVLSGDYLR---EFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLD 77 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc-CCeEEehhHHHH---HHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHH
Confidence 35789999999999999999999997 999999999999 4443323322 23333344444444432222221
Q ss_pred ----------HHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChh--hhhc--cCCCC-CHHHHHHHH
Q psy11031 299 ----------AEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKL--VLHK--GQIDN-SVSAFRRRL 363 (520)
Q Consensus 299 ----------~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~--~~~r--~R~dD-~~e~~~~Rl 363 (520)
..+. .....+..+|+||......+...... ....++++-+++. .+.| .|..+ +...-.+|+
T Consensus 78 q~~~v~~~L~~va~-~~l~~G~sVIvEgv~l~p~~~~~~~~---~~v~~i~l~v~d~e~lr~Rl~~R~~~~~~~~p~~~~ 153 (197)
T PRK12339 78 QARAIMPGINRVIR-RALLNGEDLVIESLYFHPPMIDENRT---NNIRAFYLYIRDAELHRSRLADRINYTHKNSPGKRL 153 (197)
T ss_pred HHHHHHHHHHHHHH-HHHHcCCCEEEEecCcCHHHHHHHHh---cCeEEEEEEeCCHHHHHHHHHHHhhcccCCCcHHHH
Confidence 1111 01235677999997665555432221 1124566655432 2222 22211 111122466
Q ss_pred HHHHHHhHHHHHHhhh---CCCEEEEECC
Q psy11031 364 ELFRERTLPMLRAMDV---ETRLTIVDGD 389 (520)
Q Consensus 364 ~~f~~~~~~l~~~y~~---~~~l~~IDa~ 389 (520)
-.|..++..+-+|.-+ ...+-+||++
T Consensus 154 ~~~~~~ir~i~~~l~~~a~~~~i~~i~~~ 182 (197)
T PRK12339 154 AEHLPEYRTIMDYSIADARGYNIKVIDTD 182 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeecCc
Confidence 6666677777777632 2334556554
No 87
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.85 E-value=1.1e-07 Score=90.76 Aligned_cols=159 Identities=13% Similarity=0.116 Sum_probs=93.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhccccc-----CCcchHHHHhhhhcCCccchHHH-------
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDD-----GEGLNSRIKSSVSAGDFVNRDVV------- 293 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~-----~t~~g~~i~~~l~~G~~vPd~lv------- 293 (520)
.+|+|+||+||||||+++.|+..+ +...+..+..+. ..... -...++.....++.|.......+
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~ 78 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE-QTQLLVAHRYIT---RPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGV 78 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC-CCeEEEcCEECC---CccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCC
Confidence 479999999999999999999876 654444433333 11100 01122233333444432211000
Q ss_pred HHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-c--cCCCCCHHHHHHHHHHHHHHh
Q psy11031 294 LDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-K--GQIDNSVSAFRRRLELFRERT 370 (520)
Q Consensus 294 ~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r--~R~dD~~e~~~~Rl~~f~~~~ 370 (520)
..-+...+. .+..+|++|- ..-+..+.+.++.+..+|+|++|.+.+. | +|...+.+.+++|++.+
T Consensus 79 ~~~~~~~l~-----~g~~VI~~G~---~~~~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~~~~~~~i~~rl~r~---- 146 (186)
T PRK10078 79 GIEIDLWLH-----AGFDVLVNGS---RAHLPQARARYQSALLPVCLQVSPEILRQRLENRGRENASEINARLARA---- 146 (186)
T ss_pred cHHHHHHHh-----CCCEEEEeCh---HHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhCCCCHHHHHHHHHHh----
Confidence 001233333 4567888887 3334445555555556899999987642 1 34445667788888532
Q ss_pred HHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031 371 LPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK 405 (520)
Q Consensus 371 ~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~ 405 (520)
.+|.. ...++||.+.+++++.++|...|..
T Consensus 147 ----~~~~~-ad~~vi~~~~s~ee~~~~i~~~l~~ 176 (186)
T PRK10078 147 ----ARYQP-QDCHTLNNDGSLRQSVDTLLTLLHL 176 (186)
T ss_pred ----hhhcc-CCEEEEeCCCCHHHHHHHHHHHHhh
Confidence 13332 3467789889999999998877644
No 88
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.84 E-value=3.1e-08 Score=109.56 Aligned_cols=163 Identities=12% Similarity=0.081 Sum_probs=101.8
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhh-hcCCccchHHHHHHHHHH
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSV-SAGDFVNRDVVLDIVYAE 300 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l-~~G~~vPd~lv~~ll~~~ 300 (520)
+.+.++|+|+|.|||||||+++.||+++ |+..+++++++. +. .|..+.+++ ..|+.---++-.+++.+-
T Consensus 3 ~~~~~~i~LiG~~GaGKttvg~~LA~~L-~~~fiD~D~~ie---~~------~g~si~eif~~~Ge~~FR~~E~~~l~~~ 72 (542)
T PRK14021 3 PTRRPQAVIIGMMGAGKTRVGKEVAQMM-RLPFADADVEIE---RE------IGMSIPSYFEEYGEPAFREVEADVVADM 72 (542)
T ss_pred CCCCccEEEECCCCCCHHHHHHHHHHHh-CCCEEEchHHHH---HH------HCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999997 999999999988 22 345566766 456533333333443332
Q ss_pred HhccccCCCcEEEE-e--CCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhc------cCCCCCHHHHHHHHHHHHHHhH
Q psy11031 301 MKKTKYTEADGIVI-D--GFPREMSQLIDFENKYQIHPPMILIDCSKLVLHK------GQIDNSVSAFRRRLELFRERTL 371 (520)
Q Consensus 301 l~~~~~~~~~G~IL-D--GFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r------~R~dD~~e~~~~Rl~~f~~~~~ 371 (520)
+. ..+.|| - |.+.+.+....|.+.+.....||||+++.+.+.+ .|+--... -..++....+...
T Consensus 73 ~~------~~~~VIs~GGG~v~~~~n~~~L~~~~~~~g~vv~L~~~~~~l~~Rl~~~~~RPll~~~-~~~~~~~l~~~R~ 145 (542)
T PRK14021 73 LE------DFDGIFSLGGGAPMTPSTQHALASYIAHGGRVVYLDADPKEAMERANRGGGRPMLNGD-ANKRWKKLFKQRD 145 (542)
T ss_pred Hh------cCCeEEECCCchhCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHhCCCCCCCCCCC-cHHHHHHHHHHHH
Confidence 22 223344 3 3666666666665555444579999999875432 23311100 1234444444444
Q ss_pred HHHHHhhhCCCEEEEECC-CCHHHHHHHHHHHHHH
Q psy11031 372 PMLRAMDVETRLTIVDGD-TQLPQVREEFERVLKK 405 (520)
Q Consensus 372 ~l~~~y~~~~~l~~IDa~-~~~e~V~~~I~~~I~~ 405 (520)
++ |++... ++||.+ .+++++.+.|.+.+..
T Consensus 146 ~~---Y~~~Ad-~~i~~~~~~~~~~~~~i~~~~~~ 176 (542)
T PRK14021 146 PV---FRQVAN-VHVHTRGLTPQAAAKKLIDMVAE 176 (542)
T ss_pred HH---HHhhCC-EEEECCCCCHHHHHHHHHHHHHh
Confidence 44 443222 456755 5899999999888864
No 89
>PRK13946 shikimate kinase; Provisional
Probab=98.82 E-value=1.6e-07 Score=89.43 Aligned_cols=160 Identities=11% Similarity=0.072 Sum_probs=91.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhc
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKK 303 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~ 303 (520)
.+..|+|+|.|||||||+++.|++++ |+.+++.+.++. ... +....+.+.. .|+..-.++..+++...+.
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~L-g~~~id~D~~~~---~~~--g~~~~e~~~~---~ge~~~~~~e~~~l~~l~~- 78 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATML-GLPFLDADTEIE---RAA--RMTIAEIFAA---YGEPEFRDLERRVIARLLK- 78 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc-CCCeECcCHHHH---HHh--CCCHHHHHHH---HCHHHHHHHHHHHHHHHHh-
Confidence 45679999999999999999999997 999999988776 332 2222222221 2321111222333333222
Q ss_pred cccCCCcEEEEeCC--CCCHHHHHHHHhhcCCCCCEEEecCChhhhh-c-----cCC----CCCHHHHHHHHHHHHHHhH
Q psy11031 304 TKYTEADGIVIDGF--PREMSQLIDFENKYQIHPPMILIDCSKLVLH-K-----GQI----DNSVSAFRRRLELFRERTL 371 (520)
Q Consensus 304 ~~~~~~~G~ILDGF--Prt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r-----~R~----dD~~e~~~~Rl~~f~~~~~ 371 (520)
....+|..|. ....+..+.|.. ...+|||++|.+.+. | +|+ .+..+.++ . ...
T Consensus 79 ----~~~~Vi~~ggg~~~~~~~r~~l~~----~~~~v~L~a~~e~~~~Rl~~r~~rp~~~~~~~~~~i~----~---~~~ 143 (184)
T PRK13946 79 ----GGPLVLATGGGAFMNEETRAAIAE----KGISVWLKADLDVLWERVSRRDTRPLLRTADPKETLA----R---LME 143 (184)
T ss_pred ----cCCeEEECCCCCcCCHHHHHHHHc----CCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHH----H---HHH
Confidence 2234555542 344454555543 346899999987542 1 222 11112222 2 112
Q ss_pred HHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHHH
Q psy11031 372 PMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDD 409 (520)
Q Consensus 372 ~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~~ 409 (520)
....+|... .+.....+.+++++.+.|.+.|...+.+
T Consensus 144 ~R~~~y~~~-dl~i~~~~~~~~~~~~~i~~~i~~~~~~ 180 (184)
T PRK13946 144 ERYPVYAEA-DLTVASRDVPKEVMADEVIEALAAYLEK 180 (184)
T ss_pred HHHHHHHhC-CEEEECCCCCHHHHHHHHHHHHHHhhcc
Confidence 222345542 3554557789999999999988775433
No 90
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.81 E-value=1.1e-07 Score=89.87 Aligned_cols=157 Identities=16% Similarity=0.192 Sum_probs=87.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcc
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKT 304 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~ 304 (520)
...|+|+|++||||||+++.|++.+ |+.+++.+..+. ... +..++...+ ..|+..=-+.-.+++.. +.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l-~~~~vd~D~~i~---~~~--g~~i~~~~~---~~g~~~fr~~e~~~l~~-l~-- 71 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL-NMEFYDSDQEIE---KRT--GADIGWVFD---VEGEEGFRDREEKVINE-LT-- 71 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc-CCcEEECCchHH---HHh--CcCHhHHHH---HhCHHHHHHHHHHHHHH-HH--
Confidence 4579999999999999999999997 999999988766 221 222222211 12221000111223322 22
Q ss_pred ccCCCcEEEEe-C--CCCCHHHHHHHHhhcCCCCCEEEecCChhhhh------ccCCCCCHHHHHHHHHHHHHHhHHHHH
Q psy11031 305 KYTEADGIVID-G--FPREMSQLIDFENKYQIHPPMILIDCSKLVLH------KGQIDNSVSAFRRRLELFRERTLPMLR 375 (520)
Q Consensus 305 ~~~~~~G~ILD-G--FPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~------r~R~dD~~e~~~~Rl~~f~~~~~~l~~ 375 (520)
...++|+. | .+-+......|.+ ...+|||+++.+.+. ..|+.-........++.+.....++++
T Consensus 72 ---~~~~~vi~~ggg~v~~~~~~~~l~~----~~~vv~L~~~~e~~~~Ri~~~~~rP~~~~~~~~~~~~~l~~~R~~~Y~ 144 (172)
T PRK05057 72 ---EKQGIVLATGGGSVKSRETRNRLSA----RGVVVYLETTIEKQLARTQRDKKRPLLQVDDPREVLEALANERNPLYE 144 (172)
T ss_pred ---hCCCEEEEcCCchhCCHHHHHHHHh----CCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 12345554 2 3444444455543 346999999987542 123322111112234444444455433
Q ss_pred HhhhCCCEEEEECC-CCHHHHHHHHHHHHH
Q psy11031 376 AMDVETRLTIVDGD-TQLPQVREEFERVLK 404 (520)
Q Consensus 376 ~y~~~~~l~~IDa~-~~~e~V~~~I~~~I~ 404 (520)
.+.+ ++||++ .+++++.+.|.+.+.
T Consensus 145 ~~Ad----~~idt~~~s~~ei~~~i~~~l~ 170 (172)
T PRK05057 145 EIAD----VTIRTDDQSAKVVANQIIHMLE 170 (172)
T ss_pred hhCC----EEEECCCCCHHHHHHHHHHHHh
Confidence 3322 467866 689999998887764
No 91
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.80 E-value=2.5e-08 Score=90.01 Aligned_cols=105 Identities=12% Similarity=0.234 Sum_probs=64.6
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcch---HHHHhhhhcCCccchHHHHHHHHHHHhc
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLN---SRIKSSVSAGDFVNRDVVLDIVYAEMKK 303 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g---~~i~~~l~~G~~vPd~lv~~ll~~~l~~ 303 (520)
+|+|+|+|||||||+|+.|++.+ +..+|+.+++.+ .......+.. ...... -.+.+...+...+.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~-~~~~i~~D~~~~---~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~- 68 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL-GAVVISQDEIRR---RLAGEDPPSPSDYIEAEER-------AYQILNAAIRKALR- 68 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS-TEEEEEHHHHHH---HHCCSSSGCCCCCHHHHHH-------HHHHHHHHHHHHHH-
T ss_pred CEEEECCCCCCHHHHHHHHHHHC-CCEEEeHHHHHH---HHcccccccchhHHHHHHH-------HHHHHHHHHHHHHH-
Confidence 58999999999999999999997 999999988776 2221111100 000000 01234455555555
Q ss_pred cccCCCcEEEEeCCCCCHHHHHHHHhhc---CCCCCEEEecCChhhh
Q psy11031 304 TKYTEADGIVIDGFPREMSQLIDFENKY---QIHPPMILIDCSKLVL 347 (520)
Q Consensus 304 ~~~~~~~G~ILDGFPrt~~Qae~l~~~~---~~p~~VI~Ld~~~~~~ 347 (520)
.+..+|+|+.-....+...+.+.. +.+..+|+|+|+.+.+
T Consensus 69 ----~g~~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~ 111 (143)
T PF13671_consen 69 ----NGNSVVVDNTNLSREERARLRELARKHGYPVRVVYLDAPEETL 111 (143)
T ss_dssp ----TT-EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHH
T ss_pred ----cCCCceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHH
Confidence 456799997655555555554443 3344689999998754
No 92
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=98.79 E-value=9.8e-08 Score=92.86 Aligned_cols=167 Identities=14% Similarity=0.220 Sum_probs=99.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh--------cCCc-cc----
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS--------AGDF-VN---- 289 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~--------~G~~-vP---- 289 (520)
+.+.+|.|.|++||||||+|+.|++ + |+..++++.+.+ +....++.....+...+. .|.. +-
T Consensus 3 ~~~~~igitG~igsGKSt~~~~l~~-~-g~~v~d~D~i~~---~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l 77 (208)
T PRK14731 3 SLPFLVGVTGGIGSGKSTVCRFLAE-M-GCELFEADRVAK---ELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRI 77 (208)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-C-CCeEEeccHHHH---HHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHH
Confidence 4567899999999999999999986 5 999999998888 444333333233333221 1211 11
Q ss_pred --------------hHHHHHHH----HHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhc-CCCCCEEEecCChhhhh-c
Q psy11031 290 --------------RDVVLDIV----YAEMKKTKYTEADGIVIDGFPREMSQLIDFENKY-QIHPPMILIDCSKLVLH-K 349 (520)
Q Consensus 290 --------------d~lv~~ll----~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~-~~p~~VI~Ld~~~~~~~-r 349 (520)
+.++...+ ...+.+ ....++.+|+-+-|.= |+... ..++.+|+++||.+.+. |
T Consensus 78 ~~~vf~~~~~~~~l~~i~hp~i~~~~~~~i~~-~~~~~~~vvv~e~pLL------~e~~~~~~~d~ii~V~a~~e~~~~R 150 (208)
T PRK14731 78 AQVVFSDPEKLGALNRLIHPKVFAAFQRAVDR-AARRGKRILVKEAAIL------FESGGDAGLDFIVVVAADTELRLER 150 (208)
T ss_pred HHHHhCCHHHHHHHHHHHCHHHHHHHHHHHHH-HHhcCCCEEEEEeeee------eecCchhcCCeEEEEECCHHHHHHH
Confidence 01111122 222331 0112234555444421 22211 12477999999998642 2
Q ss_pred --cCCCCCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHH
Q psy11031 350 --GQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKII 407 (520)
Q Consensus 350 --~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i 407 (520)
.|...+.+.+.+|+..+......+ +.. -++|+++.+++++++++...+...+
T Consensus 151 l~~R~~~s~e~~~~Ri~~q~~~~~~~-~~a-----d~vI~N~g~~e~l~~~i~~~~~~~~ 204 (208)
T PRK14731 151 AVQRGMGSREEIRRRIAAQWPQEKLI-ERA-----DYVIYNNGTLDELKAQTEQLYQVLL 204 (208)
T ss_pred HHHcCCCCHHHHHHHHHHcCChHHHH-HhC-----CEEEECCCCHHHHHHHHHHHHHHHH
Confidence 455557899999998766554443 221 2468999999999999988876543
No 93
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=98.76 E-value=1.9e-07 Score=86.76 Aligned_cols=152 Identities=20% Similarity=0.164 Sum_probs=82.6
Q ss_pred EEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccc----hHHHHHHHHHHHhc
Q psy11031 228 VWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVN----RDVVLDIVYAEMKK 303 (520)
Q Consensus 228 I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vP----d~lv~~ll~~~l~~ 303 (520)
|+|+|++||||||+|+.|++.+ +..+++.+++.. ... ++. +..|...+ ..+...+......
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l-~~~~v~~D~~~~---~~~---------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~- 65 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL-GAKFIEGDDLHP---AAN---------IEK-MSAGIPLNDDDRWPWLQNLNDASTA- 65 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc-CCeEEeCccccC---hHH---------HHH-HHcCCCCChhhHHHHHHHHHHHHHH-
Confidence 5789999999999999999997 999999888743 100 000 00011111 1222222211111
Q ss_pred cccC-CCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh---ccCCCC--CHHHHHHHHHHHHHHhHHHHHHh
Q psy11031 304 TKYT-EADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH---KGQIDN--SVSAFRRRLELFRERTLPMLRAM 377 (520)
Q Consensus 304 ~~~~-~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~---r~R~dD--~~e~~~~Rl~~f~~~~~~l~~~y 377 (520)
... ....+|..++.+ ....+.+.. .+..-.+++|+|+.+.+. +.|..+ ..+.++.++..+. .+ .+
T Consensus 66 -~l~~~~~~Vi~~t~~~-~~~r~~~~~-~~~~~~~i~l~~~~e~~~~R~~~R~~~~~~~~~i~~~~~~~~---~~---~~ 136 (163)
T TIGR01313 66 -AAAKNKVGIITCSALK-RHYRDILRE-AEPNLHFIYLSGDKDVILERMKARKGHFMKADMLESQFAALE---EP---LA 136 (163)
T ss_pred -HHhcCCCEEEEecccH-HHHHHHHHh-cCCCEEEEEEeCCHHHHHHHHHhccCCCCCHHHHHHHHHHhC---CC---CC
Confidence 111 223455567653 333344432 232334799999987643 134322 2344444333221 00 01
Q ss_pred hhCCCEEEEECCCCHHHHHHHHHHHHH
Q psy11031 378 DVETRLTIVDGDTQLPQVREEFERVLK 404 (520)
Q Consensus 378 ~~~~~l~~IDa~~~~e~V~~~I~~~I~ 404 (520)
. ...++.||++.++++|.+.+...|.
T Consensus 137 ~-e~~~~~id~~~~~~~~~~~~~~~~~ 162 (163)
T TIGR01313 137 D-ETDVLRVDIDQPLEGVEEDCIAVVL 162 (163)
T ss_pred C-CCceEEEECCCCHHHHHHHHHHHHh
Confidence 1 1357899999999999999877653
No 94
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=98.75 E-value=2.1e-07 Score=87.02 Aligned_cols=150 Identities=15% Similarity=0.227 Sum_probs=91.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhccc
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTK 305 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~ 305 (520)
++|+|.|.||.||||.|++|+ ++ |+.++++.++.++ .- -.+... + ......+..+.+...+...+.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~l-g~~~i~l~el~~e---~~-~~~~~d----e-~r~s~~vD~d~~~~~le~~~~--- 66 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-EL-GYKVIELNELAKE---NG-LYTEYD----E-LRKSVIVDVDKLRKRLEELLR--- 66 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-Hh-CCceeeHHHHHHh---cC-CeeccC----C-ccceEEeeHHHHHHHHHHHhc---
Confidence 469999999999999999999 76 9999999999982 11 000000 0 000112333444444443332
Q ss_pred cCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh---ccCCCCCHHHHHHHHHH--HHHHhHHHHHHhhhC
Q psy11031 306 YTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH---KGQIDNSVSAFRRRLEL--FRERTLPMLRAMDVE 380 (520)
Q Consensus 306 ~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~---r~R~dD~~e~~~~Rl~~--f~~~~~~l~~~y~~~ 380 (520)
..+.|+|+- +...+..++.||.|.|++..+. ++| ..+++.+..-++. +--......+.|
T Consensus 67 ---~~~~Ivd~H---------~~hl~~~~dlVvVLR~~p~~L~~RLk~R-Gy~~eKI~ENveAEi~~vi~~EA~E~~--- 130 (180)
T COG1936 67 ---EGSGIVDSH---------LSHLLPDCDLVVVLRADPEVLYERLKGR-GYSEEKILENVEAEILDVILIEAVERF--- 130 (180)
T ss_pred ---cCCeEeech---------hhhcCCCCCEEEEEcCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 457889885 3334444788999999987653 233 2344544443321 111112233334
Q ss_pred CCEEEEE-CCCCHHHHHHHHHHHHHH
Q psy11031 381 TRLTIVD-GDTQLPQVREEFERVLKK 405 (520)
Q Consensus 381 ~~l~~ID-a~~~~e~V~~~I~~~I~~ 405 (520)
...+.|| .+.+++++.+.|...|..
T Consensus 131 ~~v~evdtt~~s~ee~~~~i~~ii~~ 156 (180)
T COG1936 131 EAVIEVDTTNRSPEEVAEEIIDIIGG 156 (180)
T ss_pred CceEEEECCCCCHHHHHHHHHHHHcc
Confidence 4478899 558899999999888875
No 95
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.73 E-value=7.6e-08 Score=91.86 Aligned_cols=157 Identities=14% Similarity=0.286 Sum_probs=94.1
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh------cCCccc-----------
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS------AGDFVN----------- 289 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~------~G~~vP----------- 289 (520)
+|.|.|++||||||+|+.|++.+ |+.+++++++.+ +....+++....+.+.+. .|+.--
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~-~~~~i~~D~~~~---~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~ 76 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKY-HFPVIDADKIAH---QVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDP 76 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc-CCeEEeCCHHHH---HHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCH
Confidence 48999999999999999999986 799999999998 555555555554444332 222110
Q ss_pred ------hHH----HHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-c--cCCCCCH
Q psy11031 290 ------RDV----VLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-K--GQIDNSV 356 (520)
Q Consensus 290 ------d~l----v~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r--~R~dD~~ 356 (520)
+.+ +.+-+.+.+. .......+|+-+.|.-.+. .+. ...+.+++++++.+.+. | .|...+.
T Consensus 77 ~~~~~le~ilhP~i~~~i~~~i~--~~~~~~~~vvi~~pll~e~--~~~---~~~D~vv~V~~~~~~~~~Rl~~R~~~s~ 149 (188)
T TIGR00152 77 EELKWLNNLLHPLIREWMKKLLA--QFQSKLAYVLLDVPLLFEN--KLR---SLCDRVIVVDVSPQLQLERLMQRDNLTE 149 (188)
T ss_pred HHHHHHHHhhCHHHHHHHHHHHH--HhhcCCCEEEEEchHhhhC--CcH---HhCCEEEEEECCHHHHHHHHHHcCCCCH
Confidence 011 1222233343 2211223555555543221 111 23577999999998643 2 3555677
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHH
Q psy11031 357 SAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFE 400 (520)
Q Consensus 357 e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~ 400 (520)
+.+.+|+.... +..+.-. .. -.+|+.+.+++++..++.
T Consensus 150 ~~~~~r~~~q~----~~~~~~~-~a-d~vI~N~~~~e~l~~~~~ 187 (188)
T TIGR00152 150 EEVQKRLASQM----DIEERLA-RA-DDVIDNSATLADLVKQLE 187 (188)
T ss_pred HHHHHHHHhcC----CHHHHHH-hC-CEEEECCCCHHHHHHHHh
Confidence 88888887642 2212111 11 246789999999887764
No 96
>PLN02199 shikimate kinase
Probab=98.72 E-value=3.6e-07 Score=92.82 Aligned_cols=165 Identities=13% Similarity=0.088 Sum_probs=97.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh-cCCccchHHHHHHHHHHHh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS-AGDFVNRDVVLDIVYAEMK 302 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~-~G~~vPd~lv~~ll~~~l~ 302 (520)
....|+|+|.+||||||+++.|++.+ |+..++++.+++ +... |..+.+++. .|+ +.+.++-.+.+.
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~L-g~~fIDtD~lIe---~~~~-----G~sI~eIf~~~GE----~~FR~~E~e~L~ 167 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKVL-GYTFFDCDTLIE---QAMN-----GTSVAEIFVHHGE----NFFRGKETDALK 167 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh-CCCEEehHHHHH---HHhc-----CCCHHHHHHHhCH----HHHHHHHHHHHH
Confidence 35679999999999999999999997 999999999998 3321 333444443 454 344444444444
Q ss_pred ccccCCCcEEEE-e--CCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhc--------cCCC---CCHHHHHHHHHHHHH
Q psy11031 303 KTKYTEADGIVI-D--GFPREMSQLIDFENKYQIHPPMILIDCSKLVLHK--------GQID---NSVSAFRRRLELFRE 368 (520)
Q Consensus 303 ~~~~~~~~G~IL-D--GFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r--------~R~d---D~~e~~~~Rl~~f~~ 368 (520)
......+.|| - |.+-.......+. ...||||+++.+.+.+ .|+- .+.+.+..-++...+
T Consensus 168 --~L~~~~~~VIStGGG~V~~~~n~~~L~-----~G~vV~Ldas~E~l~~RL~~~~~~~RPLL~~~~~d~~~~~~~~L~~ 240 (303)
T PLN02199 168 --KLSSRYQVVVSTGGGAVIRPINWKYMH-----KGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSA 240 (303)
T ss_pred --HHHhcCCEEEECCCcccCCHHHHHHHh-----CCeEEEEECCHHHHHHHHhhcCCCCCCcCCCCCcchhhhHHHHHHH
Confidence 2222223333 3 3444444444443 2469999999875421 2321 122222111222233
Q ss_pred HhHHHHHHhhhCCCEEEEE-------------CCCCHHHHHHHHHHHHHHHHHHH
Q psy11031 369 RTLPMLRAMDVETRLTIVD-------------GDTQLPQVREEFERVLKKIIDDL 410 (520)
Q Consensus 369 ~~~~l~~~y~~~~~l~~ID-------------a~~~~e~V~~~I~~~I~~~i~~~ 410 (520)
....-..+|...+ ++|+ .+.+++++..+|...+.+.++.+
T Consensus 241 L~~~R~plY~~Ad--~~V~~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~~l~~~ 293 (303)
T PLN02199 241 IWDERGEAYTNAN--ARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSFLEKE 293 (303)
T ss_pred HHHHHHHHHHhCC--EEEecccccccccccccCCCCHHHHHHHHHHHHHHHHhhc
Confidence 3333445566533 3466 45789999999988888777543
No 97
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.72 E-value=3.9e-08 Score=88.93 Aligned_cols=137 Identities=12% Similarity=0.151 Sum_probs=78.5
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcccc
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKY 306 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~~ 306 (520)
+|+|.|+|||||||+|+.|++++ |+++++.+.+.. +.. +........ ..-+.+.+...+. ..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~-~~~~~~~~~i~~---e~~------~~~~~~~~~------~~~i~~~l~~~~~--~~ 62 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL-GLPYLDTGGIRT---EEV------GKLASEVAA------IPEVRKALDERQR--EL 62 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-CCceeccccCCH---HHH------HHHHHHhcc------cHhHHHHHHHHHH--HH
Confidence 48999999999999999999998 999999985543 211 111111000 0112222333233 22
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-c-------cCCCCCHHHHHHHHHHHHHH-hHHHHHHh
Q psy11031 307 TEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-K-------GQIDNSVSAFRRRLELFRER-TLPMLRAM 377 (520)
Q Consensus 307 ~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r-------~R~dD~~e~~~~Rl~~f~~~-~~~l~~~y 377 (520)
....+||+||--... . .....+.+|||+++.+.+. | ++...+.+..++++....+. ......+|
T Consensus 63 ~~~~~~Vidg~~~~~--~-----~~~~~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 135 (147)
T cd02020 63 AKKPGIVLEGRDIGT--V-----VFPDADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIERDERDSTRYVAPL 135 (147)
T ss_pred hhCCCEEEEeeeeee--E-----EcCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcccccc
Confidence 234579999963211 0 1223457899999998642 1 13345677777777665443 24444566
Q ss_pred hhCCCEEEEEC
Q psy11031 378 DVETRLTIVDG 388 (520)
Q Consensus 378 ~~~~~l~~IDa 388 (520)
+..+.=+.||.
T Consensus 136 ~~~~~dl~i~~ 146 (147)
T cd02020 136 KLAEDAIVIDT 146 (147)
T ss_pred cCCCCcEEEeC
Confidence 44444345664
No 98
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.71 E-value=2.2e-07 Score=91.64 Aligned_cols=37 Identities=19% Similarity=0.416 Sum_probs=35.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR 262 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr 262 (520)
+.+|.|.|++||||||+|+.|+++| |+.+++.|.++|
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~-~~~~~~~~~~~r 40 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKL-GFHYLDTGAMYR 40 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh-CCCcccCchhHH
Confidence 5789999999999999999999998 999999999988
No 99
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=98.71 E-value=1.9e-07 Score=88.62 Aligned_cols=127 Identities=16% Similarity=0.230 Sum_probs=78.7
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCc-----c-------------
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDF-----V------------- 288 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~-----v------------- 288 (520)
+|.|.|++||||||+|+.|++ + |+.+++++++.+ +....+.+.+..+.+.+..+-. +
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~-g~~~i~~D~~~~---~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~ 75 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-L-GIPVIDADKIAH---EVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADP 75 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-C-CCCEEecCHHHH---hhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCH
Confidence 489999999999999999998 6 999999999999 6666666666666665532211 1
Q ss_pred -----chHHHHHHHHHHHhcc--ccCCCcEEEEeCCCCCHHHHHHHHhhc-CCCCCEEEecCChhhhh-c--cCCCCCHH
Q psy11031 289 -----NRDVVLDIVYAEMKKT--KYTEADGIVIDGFPREMSQLIDFENKY-QIHPPMILIDCSKLVLH-K--GQIDNSVS 357 (520)
Q Consensus 289 -----Pd~lv~~ll~~~l~~~--~~~~~~G~ILDGFPrt~~Qae~l~~~~-~~p~~VI~Ld~~~~~~~-r--~R~dD~~e 357 (520)
-++++..++..++... ......-+|+|+ |.- |+..+ ...+.+++++||.+... | .|...+.+
T Consensus 76 ~~~~~l~~i~hp~i~~~~~~~~~~~~~~~~vive~-plL------~e~~~~~~~D~vv~V~a~~~~ri~Rl~~Rd~~s~~ 148 (179)
T cd02022 76 EKRKKLEAITHPLIRKEIEEQLAEARKEKVVVLDI-PLL------FETGLEKLVDRVIVVDAPPEIQIERLMKRDGLSEE 148 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCEEEEEe-hHh------hcCCcHHhCCeEEEEECCHHHHHHHHHHcCCCCHH
Confidence 1233333333333310 111123355554 222 22221 23577999999998643 2 34455677
Q ss_pred HHHHHHHH
Q psy11031 358 AFRRRLEL 365 (520)
Q Consensus 358 ~~~~Rl~~ 365 (520)
.+.+|+..
T Consensus 149 ~~~~r~~~ 156 (179)
T cd02022 149 EAEARIAS 156 (179)
T ss_pred HHHHHHHh
Confidence 88888775
No 100
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=98.71 E-value=1.6e-07 Score=93.57 Aligned_cols=156 Identities=15% Similarity=0.176 Sum_probs=85.8
Q ss_pred EEEEEcCCCCChhHHHHHHHhhC----CCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHh
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDY----PNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMK 302 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~----~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~ 302 (520)
.|+|+|.|||||||+|+.|++.+ ..+.+++. |.++ ....... ......+ .+....++...+.
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~-D~lr---~~~~~~~---~~~e~~~-------~~~~~~~i~~~l~ 66 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT-DLIR---ESFPVWK---EKYEEFI-------RDSTLYLIKTALK 66 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc-HHHH---HHhHHhh---HHhHHHH-------HHHHHHHHHHHHh
Confidence 38999999999999999999864 13455555 5565 2221000 0111111 1223344555444
Q ss_pred ccccCCCcEEEEeCCCCCHHHHHHHH---hhcCCCCCEEEecCChhhhhc---cCCC-CCHHHHHHHHHHHHHHhHHHHH
Q psy11031 303 KTKYTEADGIVIDGFPREMSQLIDFE---NKYQIHPPMILIDCSKLVLHK---GQID-NSVSAFRRRLELFRERTLPMLR 375 (520)
Q Consensus 303 ~~~~~~~~G~ILDGFPrt~~Qae~l~---~~~~~p~~VI~Ld~~~~~~~r---~R~d-D~~e~~~~Rl~~f~~~~~~l~~ 375 (520)
.+..+|+||......+...+. ...+.+..+|+++||.+.+.+ .|.. ...+.++.....|. .|...
T Consensus 67 -----~~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~~~~~~~i~~l~~r~e---~p~~~ 138 (249)
T TIGR03574 67 -----NKYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGEKIPNEVIKDMYEKFD---EPGTK 138 (249)
T ss_pred -----CCCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCCCCCHHHHHHHHHhhC---CCCCC
Confidence 345699999764443333333 333445568999999876432 2322 22344444333332 22222
Q ss_pred HhhhCCCEEEEECCC--CHHHHHHHHHHHHHH
Q psy11031 376 AMDVETRLTIVDGDT--QLPQVREEFERVLKK 405 (520)
Q Consensus 376 ~y~~~~~l~~IDa~~--~~e~V~~~I~~~I~~ 405 (520)
++- ....++||++. +.+++++.|...+.+
T Consensus 139 ~~w-d~~~~~vd~~~~~~~~ei~~~i~~~~~~ 169 (249)
T TIGR03574 139 YSW-DLPDLTIDTTKKIDYNEILEEILEISEN 169 (249)
T ss_pred CCc-cCceEEecCCCCCCHHHHHHHHHHHhhc
Confidence 211 12578899876 668888888776654
No 101
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.71 E-value=2.7e-08 Score=87.40 Aligned_cols=35 Identities=31% Similarity=0.625 Sum_probs=32.6
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR 262 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr 262 (520)
+|+|.|+|||||||+|+.|+++| |+.+++++++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~-~~~~i~~d~~~~ 35 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL-GFPVISMDDLIR 35 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH-TCEEEEEHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHHHHH-CCeEEEecceEE
Confidence 68999999999999999999998 999999999645
No 102
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.70 E-value=5.8e-07 Score=84.73 Aligned_cols=160 Identities=18% Similarity=0.232 Sum_probs=86.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCCCe---eeehhhHHhhhhcccccCCcc----hHHHHhhhhcCCcc--chH-----
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPNWT---QISLGKLLRYFANIEDDGEGL----NSRIKSSVSAGDFV--NRD----- 291 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~---~is~gdLlr~~~~~~~~~t~~----g~~i~~~l~~G~~v--Pd~----- 291 (520)
.+|+|+|++||||||+++.|+..+ +.. ++.....-| .....+... ...+...+..+... ...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~-~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL-AGDPRVHFVRRVITR---PASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSY 77 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc-CcCCcEEEeeEEccc---CCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccc
Confidence 468999999999999999999876 432 121111112 111111110 11222222222211 000
Q ss_pred HHHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-c--cCCCCCHHHHHHHHHHHHH
Q psy11031 292 VVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-K--GQIDNSVSAFRRRLELFRE 368 (520)
Q Consensus 292 lv~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r--~R~dD~~e~~~~Rl~~f~~ 368 (520)
-+...+...+. .+..+|+||-. .....+.+.+. ...+|||+|+.+.+. | .|...+.+.+.+|+..+..
T Consensus 78 g~~~~i~~~~~-----~g~~vv~~g~~---~~~~~~~~~~~-~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~rl~~~~~ 148 (179)
T TIGR02322 78 GIPAEIDQWLE-----AGDVVVVNGSR---AVLPEARQRYP-NLLVVNITASPDVLAQRLAARGRESREEIEERLARSAR 148 (179)
T ss_pred cChHHHHHHHh-----cCCEEEEECCH---HHHHHHHHHCC-CcEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHHHhh
Confidence 00111222222 35679999972 23344444333 346899999987642 1 3434456778888764332
Q ss_pred HhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031 369 RTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK 405 (520)
Q Consensus 369 ~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~ 405 (520)
... ....++.|+++.+++++.++|.+.|.+
T Consensus 149 ~~~-------~~~~~~vi~~~~~~ee~~~~i~~~l~~ 178 (179)
T TIGR02322 149 FAA-------APADVTTIDNSGSLEVAGETLLRLLRK 178 (179)
T ss_pred ccc-------ccCCEEEEeCCCCHHHHHHHHHHHHcc
Confidence 211 223466789999999999999887753
No 103
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.70 E-value=4.6e-07 Score=85.48 Aligned_cols=161 Identities=9% Similarity=0.079 Sum_probs=82.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCC-CCeeeehhhHHhhhhcccccCCcchHHHHhhh-hcC--CccchHH---HHHHH
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYP-NWTQISLGKLLRYFANIEDDGEGLNSRIKSSV-SAG--DFVNRDV---VLDIV 297 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~-g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l-~~G--~~vPd~l---v~~ll 297 (520)
.++|++.|+|||||||+|+.|++.+. .+.|++.+++.. ........ . +..+ .++ ...|.+. +...+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~---~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~y~~~ 74 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIE---ALPLKCQD---A-EGGIEFDGDGGVSPGPEFRLLEGAW 74 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHH---hcChhhcc---c-ccccccCccCCcccchHHHHHHHHH
Confidence 45899999999999999999999862 245667766655 22110000 0 0001 011 1122222 22222
Q ss_pred HHHHhccccCCCcEEEEeC-CCCCHHHHHHHHhhcCCCCCEEEecCChhhhhc---cCCCCCHHHHHHHHHHHHHHhHHH
Q psy11031 298 YAEMKKTKYTEADGIVIDG-FPREMSQLIDFENKYQIHPPMILIDCSKLVLHK---GQIDNSVSAFRRRLELFRERTLPM 373 (520)
Q Consensus 298 ~~~l~~~~~~~~~G~ILDG-FPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r---~R~dD~~e~~~~Rl~~f~~~~~~l 373 (520)
...+.. ....+..+|+|. |+.....-+.+....+.+...|+++|+.+.+.+ .|.+... ++... +..
T Consensus 75 ~~~~~~-~l~~G~~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~~~~~~l~~R~~~R~~~~~-----~~~~~--~~~-- 144 (175)
T cd00227 75 YEAVAA-MARAGANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCPGEVAEGRETARGDRVP-----GQARK--QAR-- 144 (175)
T ss_pred HHHHHH-HHhCCCcEEEeeeccCCHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhcCCccc-----hHHHH--HHH--
Confidence 222321 233577899996 552222223333333334458899999876432 3433211 11110 000
Q ss_pred HHHhhhCCCEEEEECC-CCHHHHHHHHHHHH
Q psy11031 374 LRAMDVETRLTIVDGD-TQLPQVREEFERVL 403 (520)
Q Consensus 374 ~~~y~~~~~l~~IDa~-~~~e~V~~~I~~~I 403 (520)
.++......+.||.+ .++++..+.|.+.|
T Consensus 145 -~~~~~~~~dl~iDts~~s~~e~a~~i~~~l 174 (175)
T cd00227 145 -VVHAGVEYDLEVDTTHKTPIECARAIAARV 174 (175)
T ss_pred -HhcCCCcceEEEECCCCCHHHHHHHHHHhc
Confidence 112112235689988 57988888877654
No 104
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.69 E-value=3.1e-07 Score=87.14 Aligned_cols=160 Identities=14% Similarity=0.128 Sum_probs=93.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccc-------hHHHHHHH
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVN-------RDVVLDIV 297 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vP-------d~lv~~ll 297 (520)
..+++|+|++||||||+++.|+..+ +..+++.+++.. .. .++.. ..|.... ...+.+..
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l-~~~~i~gd~~~~---~~---------~~r~~-~~g~~~~~~~~~~~~~~~~~~~ 68 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALF-SAKFIDGDDLHP---AK---------NIDKM-SQGIPLTDEDRLPWLERLNDAS 68 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc-CCEEECCcccCC---Hh---------HHHHH-hcCCCCCcccchHHHHHHHHHH
Confidence 3579999999999999999999986 888887765533 10 01111 1121111 12222222
Q ss_pred HHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh---ccCCCCCHHHHHHHHHHHHHHhHHHH
Q psy11031 298 YAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH---KGQIDNSVSAFRRRLELFRERTLPML 374 (520)
Q Consensus 298 ~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~---r~R~dD~~e~~~~Rl~~f~~~~~~l~ 374 (520)
...+. ....|||+..|-+. ...+.+. ....+..+|+|+|+.+.+. ..|..+. .+.+.+..+...+.
T Consensus 69 ~~~~~----~~~~g~iv~s~~~~-~~R~~~r-~~~~~~~~v~l~a~~~~l~~Rl~~R~~~~-----~~~~vl~~Q~~~~e 137 (176)
T PRK09825 69 YSLYK----KNETGFIVCSSLKK-QYRDILR-KSSPNVHFLWLDGDYETILARMQRRAGHF-----MPPDLLQSQFDALE 137 (176)
T ss_pred HHHHh----cCCCEEEEEEecCH-HHHHHHH-hhCCCEEEEEEeCCHHHHHHHHhcccCCC-----CCHHHHHHHHHHcC
Confidence 22212 13578888777433 2233333 3344556899999998643 2343222 14444444433332
Q ss_pred HHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHHH
Q psy11031 375 RAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDD 409 (520)
Q Consensus 375 ~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~~ 409 (520)
..-.....++.||++++++.+...+...+...++.
T Consensus 138 ~~~~~e~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 172 (176)
T PRK09825 138 RPCADEHDIARIDVNHDIENVTEQCRQAVQAFRQA 172 (176)
T ss_pred CCCCCcCCeEEEECCCCHHHHHHHHHHHHHHHHhc
Confidence 22222235899999999999999888888776654
No 105
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.68 E-value=8.7e-07 Score=85.28 Aligned_cols=163 Identities=19% Similarity=0.241 Sum_probs=93.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCC----c----chHHHHhhhhcCCccch-----
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGE----G----LNSRIKSSVSAGDFVNR----- 290 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t----~----~g~~i~~~l~~G~~vPd----- 290 (520)
....|+|+|++||||||+++.|++.+ ...++......| . ...+. . ....+...+..|..+..
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~-~~~~~~~~~~tr---~-p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD-PNLQLSVSATTR---A-PRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFG 78 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC-ccceeccCcccc---C-CCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECC
Confidence 56789999999999999999999986 433444433333 1 11111 0 01233333333332211
Q ss_pred HHH---HHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEe-cCChhhhh---ccCCCCCHHHHHHHH
Q psy11031 291 DVV---LDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILI-DCSKLVLH---KGQIDNSVSAFRRRL 363 (520)
Q Consensus 291 ~lv---~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~L-d~~~~~~~---r~R~dD~~e~~~~Rl 363 (520)
... ...+...+. .+.-+|+|.- ...+..+.+.+. ...+|++ .++.+.+. ..|.+++.+.+++|+
T Consensus 79 ~~y~~~~~~i~~~l~-----~g~~vi~dl~---~~g~~~l~~~~~-~~~~I~i~~~s~~~l~~Rl~~R~~~~~~~i~~rl 149 (205)
T PRK00300 79 NYYGTPRSPVEEALA-----AGKDVLLEID---WQGARQVKKKMP-DAVSIFILPPSLEELERRLRGRGTDSEEVIARRL 149 (205)
T ss_pred ccccCcHHHHHHHHH-----cCCeEEEeCC---HHHHHHHHHhCC-CcEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHH
Confidence 111 222333333 3556788864 444555665554 2344444 55554322 356778899999999
Q ss_pred HHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHH
Q psy11031 364 ELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKII 407 (520)
Q Consensus 364 ~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i 407 (520)
..+..... ++...+ ++.+ +.+.++++.++...|....
T Consensus 150 ~~~~~~~~----~~~~~d-~vi~--n~~~e~~~~~l~~il~~~~ 186 (205)
T PRK00300 150 AKAREEIA----HASEYD-YVIV--NDDLDTALEELKAIIRAER 186 (205)
T ss_pred HHHHHHHH----hHHhCC-EEEE--CCCHHHHHHHHHHHHHHHH
Confidence 98886643 333323 3334 3489999999999888764
No 106
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.67 E-value=2.7e-07 Score=86.92 Aligned_cols=159 Identities=16% Similarity=0.240 Sum_probs=90.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcc--------hHHHHhhhhcCCccchH------
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGL--------NSRIKSSVSAGDFVNRD------ 291 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~--------g~~i~~~l~~G~~vPd~------ 291 (520)
.+|+|+||+||||||+++.|++.+ ...+++.....| ... .+... ...+...+..|+.+...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~-~~~~~~~~~~tr---~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED-PNLKFSISATTR---KPR-PGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNY 76 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC-ccccccccceee---CCC-CCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCee
Confidence 579999999999999999999987 555666555554 211 11110 11333334444433221
Q ss_pred --HHHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh---ccCCCCCHHHHHHHHHHH
Q psy11031 292 --VVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH---KGQIDNSVSAFRRRLELF 366 (520)
Q Consensus 292 --lv~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~---r~R~dD~~e~~~~Rl~~f 366 (520)
...+.+...+. .++.+|+|. +...+..+.+.+..+..++++.++.+.+. +.|.+++.+.+++|+..+
T Consensus 77 y~~~~~~i~~~~~-----~g~~vi~d~---~~~~~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~r~~~~~~~i~~rl~~~ 148 (180)
T TIGR03263 77 YGTPKSPVEEALA-----AGKDVLLEI---DVQGARQVKKKFPDAVSIFILPPSLEELERRLRKRGTDSEEVIERRLAKA 148 (180)
T ss_pred eCCcHHHHHHHHH-----CCCeEEEEC---CHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 11233444444 356788985 45556666666543223444455554432 356677888999999876
Q ss_pred HHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHH
Q psy11031 367 RERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLK 404 (520)
Q Consensus 367 ~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~ 404 (520)
..+... .++ ...+ |+.+ +.++.++++...+.
T Consensus 149 ~~~~~~-~~~----~d~~-i~n~-~~~~~~~~l~~~~~ 179 (180)
T TIGR03263 149 KKEIAH-ADE----FDYV-IVND-DLEKAVEELKSIIL 179 (180)
T ss_pred HHHHhc-ccc----CcEE-EECC-CHHHHHHHHHHHHh
Confidence 643211 112 2233 3444 78888888877653
No 107
>PLN02422 dephospho-CoA kinase
Probab=98.66 E-value=4.5e-07 Score=89.67 Aligned_cols=162 Identities=22% Similarity=0.316 Sum_probs=96.9
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh------cCCccch----------
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS------AGDFVNR---------- 290 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~------~G~~vPd---------- 290 (520)
+|.|.|++||||||+|+.|+ ++ |+.+++++++.+ +....+++....+.+.+. +|. +.-
T Consensus 3 ~igltG~igsGKstv~~~l~-~~-g~~~idaD~~~~---~l~~~g~~~~~~l~~~FG~~il~~dG~-idR~~L~~~VF~d 76 (232)
T PLN02422 3 VVGLTGGIASGKSTVSNLFK-SS-GIPVVDADKVAR---DVLKKGSGGWKRVVAAFGEDILLPDGE-VDREKLGQIVFSD 76 (232)
T ss_pred EEEEECCCCCCHHHHHHHHH-HC-CCeEEehhHHHH---HHHHhhHHHHHHHHHHhCHHhcCCCCc-CCHHHHHHHHhCC
Confidence 69999999999999999998 56 999999999999 666666555555554442 232 111
Q ss_pred --------HHHHHHHHHHHhcc--cc--CCCcEEEEeCCCCCHHHHHHHHhhcC-CCCCEEEecCChhhhhc---cCCCC
Q psy11031 291 --------DVVLDIVYAEMKKT--KY--TEADGIVIDGFPREMSQLIDFENKYQ-IHPPMILIDCSKLVLHK---GQIDN 354 (520)
Q Consensus 291 --------~lv~~ll~~~l~~~--~~--~~~~G~ILDGFPrt~~Qae~l~~~~~-~p~~VI~Ld~~~~~~~r---~R~dD 354 (520)
+++...+..++... .. ....-+|+|- | ..|+..+. ..+.|++++||.+.+.+ .|..-
T Consensus 77 ~~~~~~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~ei-p------LL~E~~~~~~~D~vI~V~a~~e~ri~RL~~R~g~ 149 (232)
T PLN02422 77 PSKRQLLNRLLAPYISSGIFWEILKLWLKGCKVIVLDI-P------LLFETKMDKWTKPVVVVWVDPETQLERLMARDGL 149 (232)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEe-h------hhhhcchhhhCCEEEEEECCHHHHHHHHHHcCCC
Confidence 12222222222100 11 1122344442 2 22332221 35779999999986432 34445
Q ss_pred CHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHH
Q psy11031 355 SVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKII 407 (520)
Q Consensus 355 ~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i 407 (520)
+.+.+.+|+.... +..+. ..... ++|+.+.+.+++.+++...+....
T Consensus 150 s~eea~~Ri~~Q~----~~eek-~~~AD-~VI~N~gs~e~L~~qv~~ll~~l~ 196 (232)
T PLN02422 150 SEEQARNRINAQM----PLDWK-RSKAD-IVIDNSGSLEDLKQQFQKVLEKIR 196 (232)
T ss_pred CHHHHHHHHHHcC----ChhHH-HhhCC-EEEECCCCHHHHHHHHHHHHHHHh
Confidence 6788888874211 22121 22222 468999999999999998876654
No 108
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.66 E-value=3.5e-07 Score=94.35 Aligned_cols=158 Identities=11% Similarity=0.105 Sum_probs=87.3
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh-cCCccchHHHHHHHHHH
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS-AGDFVNRDVVLDIVYAE 300 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~-~G~~vPd~lv~~ll~~~ 300 (520)
......|+|+|.|||||||+++.|++++ |+.+++++..+. +. . |..+.+++. .|+..-.++..+++...
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~L-g~~~id~D~~i~---~~--~----G~~i~ei~~~~G~~~fr~~e~~~l~~l 199 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARL-GVPFVELNREIE---RE--A----GLSVSEIFALYGQEGYRRLERRALERL 199 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHc-CCCEEeHHHHHH---HH--h----CCCHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999997 999999987776 22 1 222333332 24321122223333333
Q ss_pred HhccccCCCcEEEEeC--CCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-c----c--CC----CCCHHHHHHHHHHHH
Q psy11031 301 MKKTKYTEADGIVIDG--FPREMSQLIDFENKYQIHPPMILIDCSKLVLH-K----G--QI----DNSVSAFRRRLELFR 367 (520)
Q Consensus 301 l~~~~~~~~~G~ILDG--FPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r----~--R~----dD~~e~~~~Rl~~f~ 367 (520)
+. . ....+|-.| .+......+.+.. ...+|||+++.+.+. | . |+ ++..+.+++.
T Consensus 200 l~--~--~~~~VI~~Ggg~v~~~~~~~~l~~----~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~----- 266 (309)
T PRK08154 200 IA--E--HEEMVLATGGGIVSEPATFDLLLS----HCYTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRRI----- 266 (309)
T ss_pred Hh--h--CCCEEEECCCchhCCHHHHHHHHh----CCEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHH-----
Confidence 32 1 122333333 2333333333322 345899999987542 1 1 22 1112333322
Q ss_pred HHhHHHHHHhhhCCCEEEEECCC-CHHHHHHHHHHHHHHH
Q psy11031 368 ERTLPMLRAMDVETRLTIVDGDT-QLPQVREEFERVLKKI 406 (520)
Q Consensus 368 ~~~~~l~~~y~~~~~l~~IDa~~-~~e~V~~~I~~~I~~~ 406 (520)
...-..+|...+ ++||++. +++++.+.|.+.|...
T Consensus 267 --~~~R~~~y~~ad--~~I~t~~~s~ee~~~~I~~~l~~~ 302 (309)
T PRK08154 267 --LASREPLYARAD--AVVDTSGLTVAQSLARLRELVRPA 302 (309)
T ss_pred --HHHHHHHHHhCC--EEEECCCCCHHHHHHHHHHHHHHH
Confidence 222223443322 3578775 9999999998888644
No 109
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.63 E-value=3.2e-07 Score=83.84 Aligned_cols=101 Identities=12% Similarity=0.139 Sum_probs=60.5
Q ss_pred EEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhccccC
Q psy11031 228 VWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKYT 307 (520)
Q Consensus 228 I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~~~ 307 (520)
|+|+|+|||||||+|+.|++++ |+.+++.++++. .... ....+.... .|+ +.......+.+. ...
T Consensus 2 i~l~G~~GsGKstla~~la~~l-~~~~~~~d~~~~---~~~~--~~~~~~~~~---~~~----~~~~~~e~~~~~--~~~ 66 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL-GLPFVDLDELIE---QRAG--MSIPEIFAE---EGE----EGFRELEREVLL--LLL 66 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh-CCCEEEchHHHH---HHcC--CCHHHHHHH---HCH----HHHHHHHHHHHH--HHh
Confidence 8999999999999999999997 999999998887 3321 122222211 122 223332222222 222
Q ss_pred CCcEEEEe---CCCCCHHHHHHHHhhcCCCCCEEEecCChhhh
Q psy11031 308 EADGIVID---GFPREMSQLIDFENKYQIHPPMILIDCSKLVL 347 (520)
Q Consensus 308 ~~~G~ILD---GFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~ 347 (520)
...++||+ |+..+......+ .....+|||+++.+.+
T Consensus 67 ~~~~~vi~~g~~~i~~~~~~~~~----~~~~~~i~l~~~~e~~ 105 (154)
T cd00464 67 TKENAVIATGGGAVLREENRRLL----LENGIVVWLDASPEEL 105 (154)
T ss_pred ccCCcEEECCCCccCcHHHHHHH----HcCCeEEEEeCCHHHH
Confidence 33456666 344443332222 2345699999998864
No 110
>KOG3347|consensus
Probab=98.63 E-value=3.4e-07 Score=83.45 Aligned_cols=144 Identities=18% Similarity=0.290 Sum_probs=90.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhc
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKK 303 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~ 303 (520)
.-|.|+|.|-||+||||+|++||+++ |+.||.++++.++ +..-.+ ..+.- +.-.+.++-+++-|...|.
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~-~~~~i~isd~vkE--n~l~~g--yDE~y-----~c~i~DEdkv~D~Le~~m~- 74 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKT-GLEYIEISDLVKE--NNLYEG--YDEEY-----KCHILDEDKVLDELEPLMI- 74 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHh-CCceEehhhHHhh--hcchhc--ccccc-----cCccccHHHHHHHHHHHHh-
Confidence 34679999999999999999999997 9999999999993 111111 00011 1224667888888888888
Q ss_pred cccCCCcEEEEe----C-CCCCHHHHHHHHhhcCCCCCEEEecCChhhhh---ccCCCCCHHHHHHHH--HHHHHHhHHH
Q psy11031 304 TKYTEADGIVID----G-FPREMSQLIDFENKYQIHPPMILIDCSKLVLH---KGQIDNSVSAFRRRL--ELFRERTLPM 373 (520)
Q Consensus 304 ~~~~~~~G~ILD----G-FPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~---r~R~dD~~e~~~~Rl--~~f~~~~~~l 373 (520)
..|.|+| | ||.- . -+.|++|.|+-..+= ..|. -++..++.-+ +.|.-.....
T Consensus 75 -----~Gg~IVDyHgCd~Fper---------w---fdlVvVLr~~~s~LY~RL~sRg-Y~e~Ki~eNiecEIfgv~~eea 136 (176)
T KOG3347|consen 75 -----EGGNIVDYHGCDFFPER---------W---FDLVVVLRTPNSVLYDRLKSRG-YSEKKIKENIECEIFGVVLEEA 136 (176)
T ss_pred -----cCCcEEeecccCccchh---------h---eeEEEEEecCchHHHHHHHHcC-CCHHHHhhhcchHHHHHHHHHH
Confidence 2578887 3 3321 1 257999999986531 1222 2233333222 3444445566
Q ss_pred HHHhhhCCCEEEEECCCCHHHHHHH
Q psy11031 374 LRAMDVETRLTIVDGDTQLPQVREE 398 (520)
Q Consensus 374 ~~~y~~~~~l~~IDa~~~~e~V~~~ 398 (520)
.+.|... .++.+.++.. ++....
T Consensus 137 ~eSy~~~-iV~eL~s~~~-Eem~~n 159 (176)
T KOG3347|consen 137 RESYSPK-IVVELQSETK-EEMESN 159 (176)
T ss_pred HHHcCCc-ceeecCcCCH-HHHHHH
Confidence 6778653 5666666654 544444
No 111
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=98.62 E-value=1.1e-06 Score=84.99 Aligned_cols=161 Identities=16% Similarity=0.189 Sum_probs=97.8
Q ss_pred EEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh------cCCccc------------
Q psy11031 228 VWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS------AGDFVN------------ 289 (520)
Q Consensus 228 I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~------~G~~vP------------ 289 (520)
|.|.|++||||||+|+.|++ + |+..++++++.+ +....+++....+.+.+. +|. +.
T Consensus 2 i~itG~~gsGKst~~~~l~~-~-g~~~i~~D~i~~---~~~~~~~~~~~~i~~~fG~~i~~~~g~-idr~~L~~~vF~~~ 75 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEE-L-GAFGISADRLAK---RYTEPDSPILSELVSLLGPSILDENGK-PNRKKISEIVFNDE 75 (196)
T ss_pred EEEECCCCccHHHHHHHHHH-C-CCEEEecchHHH---HHHhcCcHHHHHHHHHhChhhcCCCCc-cCHHHHHHHHhCCH
Confidence 78999999999999998875 5 999999999998 555555555554554332 232 11
Q ss_pred ------hHHHHHHHH----HHHhccccCCCcEEEEeCCCCCHHHHHHHHhhc-CCCCCEEEecCChhhhh---ccCCCCC
Q psy11031 290 ------RDVVLDIVY----AEMKKTKYTEADGIVIDGFPREMSQLIDFENKY-QIHPPMILIDCSKLVLH---KGQIDNS 355 (520)
Q Consensus 290 ------d~lv~~ll~----~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~-~~p~~VI~Ld~~~~~~~---r~R~dD~ 355 (520)
++++...+. ..+. .... ..+|+-.-|-- |+..+ ...+.+++++||.+... ..|...+
T Consensus 76 ~~~~~L~~i~hP~v~~~~~~~~~--~~~~-~~~vi~e~pLL------~E~~~~~~~D~vi~V~a~~e~r~~RL~~R~g~s 146 (196)
T PRK14732 76 EKLKALNELIHPLVRKDFQKILQ--TTAE-GKLVIWEVPLL------FETDAYTLCDATVTVDSDPEESILRTISRDGMK 146 (196)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH--HHhc-CCcEEEEeeee------eEcCchhhCCEEEEEECCHHHHHHHHHHcCCCC
Confidence 122222222 2222 1112 23444444433 22111 13577999999998642 2454557
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHHH
Q psy11031 356 VSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDD 409 (520)
Q Consensus 356 ~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~~ 409 (520)
.+.+.+|+..- . +..+.-...+ ++|+.+.+.+++..++...+...+++
T Consensus 147 ~e~a~~ri~~Q---~-~~~~k~~~aD--~vI~N~~~~~~l~~~v~~l~~~~~~~ 194 (196)
T PRK14732 147 KEDVLARIASQ---L-PITEKLKRAD--YIVRNDGNREGLKEECKILYSTLLKK 194 (196)
T ss_pred HHHHHHHHHHc---C-CHHHHHHhCC--EEEECCCCHHHHHHHHHHHHHHHHHh
Confidence 78888888652 1 3333222222 45788999999999999887665554
No 112
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=98.61 E-value=1.8e-06 Score=83.94 Aligned_cols=164 Identities=13% Similarity=0.174 Sum_probs=95.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhh-----hcCCccch-------
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSV-----SAGDFVNR------- 290 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l-----~~G~~vPd------- 290 (520)
..|.+|.|.|++||||||+|+.|++++ |+.+++++.+.+ +.... ++....+.+.+ .+|. +.-
T Consensus 4 ~~~~~IglTG~iGsGKStv~~~l~~~l-g~~vidaD~i~~---~l~~~-~~~~~~i~~~fG~~i~~~g~-idR~~L~~~v 77 (204)
T PRK14733 4 INTYPIGITGGIASGKSTATRILKEKL-NLNVVCADTISR---EITKK-PSVIKKIAEKFGDEIVMNKQ-INRAMLRAII 77 (204)
T ss_pred CceEEEEEECCCCCCHHHHHHHHHHHc-CCeEEeccHHHH---HHHCc-hHHHHHHHHHhCHHhccCCC-cCHHHHHHHH
Confidence 346789999999999999999999887 999999999988 44332 22222233222 1221 111
Q ss_pred -----------HHHHHHHHHHHhcc--ccCCCcEEEEeCCCCCHHHHHHHHhhc---CCCCCEEEecCChhhhh-c--cC
Q psy11031 291 -----------DVVLDIVYAEMKKT--KYTEADGIVIDGFPREMSQLIDFENKY---QIHPPMILIDCSKLVLH-K--GQ 351 (520)
Q Consensus 291 -----------~lv~~ll~~~l~~~--~~~~~~G~ILDGFPrt~~Qae~l~~~~---~~p~~VI~Ld~~~~~~~-r--~R 351 (520)
.++...+..++.+. .. ...-+|+|- | ..|+..+ ...+.|+++.||.+..- | .|
T Consensus 78 F~d~~~~~~Le~i~HP~V~~~~~~~~~~~-~~~~vv~ei-p------LL~E~~~~~~~~~D~vi~V~a~~e~ri~Rl~~R 149 (204)
T PRK14733 78 TESKEAKKWLEDYLHPVINKEIKKQVKES-DTVMTIVDI-P------LLGPYNFRHYDYLKKVIVIKADLETRIRRLMER 149 (204)
T ss_pred hCCHHHHHHHHhhhhHHHHHHHHHHHHhc-CCCeEEEEe-c------hhhhccCchhhhCCEEEEEECCHHHHHHHHHHc
Confidence 22222222222210 11 123455664 2 2233321 23577999999998643 2 45
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCC-CHHHHHHHHHHHHHHH
Q psy11031 352 IDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDT-QLPQVREEFERVLKKI 406 (520)
Q Consensus 352 ~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~-~~e~V~~~I~~~I~~~ 406 (520)
..-+.+...+|+.... +..+.-+..+ .+||.+. +.+++.+++...+...
T Consensus 150 d~~s~~~a~~ri~~Q~----~~eek~~~aD--~VI~N~g~~~~~l~~~~~~~~~~~ 199 (204)
T PRK14733 150 DGKNRQQAVAFINLQI----SDKEREKIAD--FVIDNTELTDQELESKLITTINEI 199 (204)
T ss_pred CCCCHHHHHHHHHhCC----CHHHHHHhCC--EEEECcCCCHHHHHHHHHHHHHHH
Confidence 4557778888876322 2222222222 4688888 9999888888766654
No 113
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=98.59 E-value=6.4e-07 Score=86.76 Aligned_cols=167 Identities=15% Similarity=0.201 Sum_probs=101.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccch--------------
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNR-------------- 290 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd-------------- 290 (520)
..+|-|.|++||||||.|+.+++ + |++.++++++.| +....+++....+.+.+...-.-++
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~-G~~vidaD~v~r---~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~ 76 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-L-GFPVIDADDVAR---EVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFN 76 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-c-CCeEEEccHHHH---HHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcC
Confidence 36799999999999999999988 7 999999999999 6666665555555544321111011
Q ss_pred ---------HHHHHHHHHHHhccccCC-CcEEEEeCCCCCHHHHHHHHhhcCC--CCCEEEecCChhhhh---ccCCCCC
Q psy11031 291 ---------DVVLDIVYAEMKKTKYTE-ADGIVIDGFPREMSQLIDFENKYQI--HPPMILIDCSKLVLH---KGQIDNS 355 (520)
Q Consensus 291 ---------~lv~~ll~~~l~~~~~~~-~~G~ILDGFPrt~~Qae~l~~~~~~--p~~VI~Ld~~~~~~~---r~R~dD~ 355 (520)
.++..++...+. ..... ..+|++- .+..|.+..+. .+.||.++||+++.- ..|..++
T Consensus 77 ~~~~~~~Le~i~hPli~~~~~-~~~~~~~~~~~~~-------eiplL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~~~~ 148 (201)
T COG0237 77 DPEARLKLEKILHPLIRAEIK-VVIDGARSPYVVL-------EIPLLFEAGGEKYFDKVIVVYAPPEIRLERLMKRDGLD 148 (201)
T ss_pred CHHHHHHHHHhhhHHHHHHHH-HHHHHhhCCceEE-------EchHHHhccccccCCEEEEEECCHHHHHHHHHhcCCCC
Confidence 122222233321 01111 1223332 23334444332 467999999998632 2555677
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH
Q psy11031 356 VSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDDL 410 (520)
Q Consensus 356 ~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~~~ 410 (520)
.+.+..|+...... .+-+...+ ..+|++.+++...++|...+.......
T Consensus 149 ~e~~~~~~~~Q~~~----~ek~~~ad--~vi~n~~~i~~l~~~i~~~~~~~~~~~ 197 (201)
T COG0237 149 EEDAEARLASQRDL----EEKLALAD--VVIDNDGSIENLLEQIEKLLKELLGLV 197 (201)
T ss_pred HHHHHHHHHhcCCH----HHHHhhcC--ChhhcCCCHHHHHHHHHHHHHHHHhhh
Confidence 77777777643332 22233223 357999999998888888777765544
No 114
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=98.57 E-value=4.8e-07 Score=86.36 Aligned_cols=28 Identities=21% Similarity=0.452 Sum_probs=23.9
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCeee
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQI 255 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~i 255 (520)
+|+|.|++||||||+|+.|++.+ |+..+
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~-~~~~~ 28 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHL-GYEVV 28 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-CCccc
Confidence 48999999999999999999875 76443
No 115
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.54 E-value=1.1e-06 Score=80.39 Aligned_cols=105 Identities=17% Similarity=0.147 Sum_probs=61.9
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccc----hHHHHHHHHHHHh
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVN----RDVVLDIVYAEMK 302 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vP----d~lv~~ll~~~l~ 302 (520)
+|+|.|+|||||||+|+.|++.+ ++.+++.+++.. ... ...+..|...+ ......+......
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~-~~~~i~~D~~~~---~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL-GAPFIDGDDLHP---PAN----------IAKMAAGIPLNDEDRWPWLQALTDALLA 66 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc-CCEEEeCccccc---HHH----------HHHHHcCCCCCccchhhHHHHHHHHHHH
Confidence 47999999999999999999997 999999877654 211 00111121111 1222222222222
Q ss_pred cccc-CCCcEEEEeCCCCCHHHHHHHHhhc-CCCCCEEEecCChhhh
Q psy11031 303 KTKY-TEADGIVIDGFPREMSQLIDFENKY-QIHPPMILIDCSKLVL 347 (520)
Q Consensus 303 ~~~~-~~~~G~ILDGFPrt~~Qae~l~~~~-~~p~~VI~Ld~~~~~~ 347 (520)
.. ..+.++|+|.--........+.... +.+..+|+++|+.+..
T Consensus 67 --~l~~~~~~vVid~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~ 111 (150)
T cd02021 67 --KLASAGEGVVVACSALKRIYRDILRGGAANPRVRFVHLDGPREVL 111 (150)
T ss_pred --HHHhCCCCEEEEeccccHHHHHHHHhcCCCCCEEEEEEECCHHHH
Confidence 11 2355788885334445555555543 2334589999998764
No 116
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=98.52 E-value=8.9e-07 Score=82.27 Aligned_cols=146 Identities=18% Similarity=0.191 Sum_probs=83.9
Q ss_pred CCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh-cCCccchHHHHHHHHHHHhccccCCCcEE
Q psy11031 234 PGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS-AGDFVNRDVVLDIVYAEMKKTKYTEADGI 312 (520)
Q Consensus 234 PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~-~G~~vPd~lv~~ll~~~l~~~~~~~~~G~ 312 (520)
|||||||+++.||+.+ |+..+++++++. +. .|..+.+++. .|+.-=-+.-.+++.+-+. ..+.
T Consensus 1 ~GsGKStvg~~lA~~L-~~~fiD~D~~i~---~~------~g~si~~i~~~~G~~~fr~~E~~~l~~l~~------~~~~ 64 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRL-GRPFIDLDDEIE---ER------TGMSISEIFAEEGEEAFRELESEALRELLK------ENNC 64 (158)
T ss_dssp TTSSHHHHHHHHHHHH-TSEEEEHHHHHH---HH------HTSHHHHHHHHHHHHHHHHHHHHHHHHHHC------SSSE
T ss_pred CCCcHHHHHHHHHHHh-CCCccccCHHHH---HH------hCCcHHHHHHcCChHHHHHHHHHHHHHHhc------cCcE
Confidence 7999999999999997 999999999998 33 2344555543 3431111222333333222 2244
Q ss_pred EEe---CCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhc------cCCCC-CHHHHHHHHHHHHHHhHHHHHHhhhCCC
Q psy11031 313 VID---GFPREMSQLIDFENKYQIHPPMILIDCSKLVLHK------GQIDN-SVSAFRRRLELFRERTLPMLRAMDVETR 382 (520)
Q Consensus 313 ILD---GFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r------~R~dD-~~e~~~~Rl~~f~~~~~~l~~~y~~~~~ 382 (520)
||. |.+...+..+.|.+ ...||||+++.+.+.+ .|+-- .......-.+.+. ...++++.+ ..
T Consensus 65 VIa~GGG~~~~~~~~~~L~~----~g~vI~L~~~~~~l~~Rl~~~~~Rp~l~~~~~~~~~~~~~~-~R~~~Y~~~---a~ 136 (158)
T PF01202_consen 65 VIACGGGIVLKEENRELLKE----NGLVIYLDADPEELAERLRARDNRPLLKGKMEHEEILELLF-EREPLYEQA---AD 136 (158)
T ss_dssp EEEE-TTGGGSHHHHHHHHH----HSEEEEEE--HHHHHHHHHHHCTSGGTCSHHHHHHHHHHHH-HHHHHHHHH---SS
T ss_pred EEeCCCCCcCcHHHHHHHHh----CCEEEEEeCCHHHHHHHHhCCCCCCCCCCCChHHHHHHHHH-HHHHHHHhc---Ce
Confidence 443 47888887777773 3459999999875321 23211 1111111222222 334444433 32
Q ss_pred EEEEECCCCH-HHHHHHHHHHHH
Q psy11031 383 LTIVDGDTQL-PQVREEFERVLK 404 (520)
Q Consensus 383 l~~IDa~~~~-e~V~~~I~~~I~ 404 (520)
++||.+..+ +++.++|.+.|+
T Consensus 137 -~~v~~~~~~~~~i~~~i~~~l~ 158 (158)
T PF01202_consen 137 -IVVDTDGSPPEEIAEEILEFLK 158 (158)
T ss_dssp -EEEETSSCHHHHHHHHHHHHH-
T ss_pred -EEEeCCCCCHHHHHHHHHHHhC
Confidence 468888777 999999887763
No 117
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.50 E-value=1.4e-06 Score=95.17 Aligned_cols=39 Identities=18% Similarity=0.304 Sum_probs=36.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRY 263 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~ 263 (520)
.+++|.|.||+||||||+|+.|++++ |+.+++.|+++|.
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l-~~~~~d~g~~YR~ 321 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKL-GLLYLDTGAMYRA 321 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc-CCeEecCCceehH
Confidence 67899999999999999999999998 9999999999993
No 118
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.48 E-value=2.2e-06 Score=80.70 Aligned_cols=158 Identities=13% Similarity=0.144 Sum_probs=79.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCC----CCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHH----HH
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYP----NWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDV----VL 294 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~----g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~l----v~ 294 (520)
..|..|++.|+|||||||+|+.|++++. +...++ ++-++ +..... |....... ..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~-~d~~r---~~~~~~-------------~~~~~~~~~~~~~~ 67 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD-GDELR---EILGHY-------------GYDKQSRIEMALKR 67 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe-cHHHH---hhcCCC-------------CCCHHHHHHHHHHH
Confidence 4577999999999999999999998761 245554 45556 322110 10001111 11
Q ss_pred HHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhccCCCCCHHHHHH-HHHHHHHHhHHH
Q psy11031 295 DIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHKGQIDNSVSAFRR-RLELFRERTLPM 373 (520)
Q Consensus 295 ~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r~R~dD~~e~~~~-Rl~~f~~~~~~l 373 (520)
..+...+. ..+..+|+||.-- ..+...+......+..+|||+|+.+.+.++-. .. .... ..+.+.+....-
T Consensus 68 ~~l~~~l~----~~g~~VI~~~~~~-~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~--~~-l~~~~~~~~~~~~~~~~ 139 (176)
T PRK05541 68 AKLAKFLA----DQGMIVIVTTISM-FDEIYAYNRKHLPNYFEVYLKCDMEELIRRDQ--KG-LYTKALKGEIKNVVGVD 139 (176)
T ss_pred HHHHHHHH----hCCCEEEEEeCCc-HHHHHHHHHhhcCCeEEEEEeCCHHHHHHhch--hh-HHHHHHcCcccccccCC
Confidence 12222222 2346788897531 22233333333344568999999876543211 00 0000 001111111111
Q ss_pred HHHhhhCCCEEEEECC--CCHHHHHHHHHHHHHHH
Q psy11031 374 LRAMDVETRLTIVDGD--TQLPQVREEFERVLKKI 406 (520)
Q Consensus 374 ~~~y~~~~~l~~IDa~--~~~e~V~~~I~~~I~~~ 406 (520)
..+|.... -++||.+ .+++++.+.|...+...
T Consensus 140 ~~~~~~~A-d~vI~~~~~~~~~~~v~~i~~~l~~~ 173 (176)
T PRK05541 140 IPFDEPKA-DLVIDNSCRTSLDEKVDLILNKLKLR 173 (176)
T ss_pred CcccCCCC-CEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 23443322 2456766 47888888777776543
No 119
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.48 E-value=9.8e-07 Score=96.41 Aligned_cols=145 Identities=12% Similarity=0.095 Sum_probs=79.0
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh-cCCccchHHHHHHHHHHHhccc
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS-AGDFVNRDVVLDIVYAEMKKTK 305 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~-~G~~vPd~lv~~ll~~~l~~~~ 305 (520)
.|+|+|+|||||||+++.|++++ |+.++++++++. +. .|..+.+++. .|+..-.++-.+++++.+.
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~l-g~~~id~D~~i~---~~------~g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~--- 68 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVL-DLQFIDMDEEIE---RR------EGRSVRRIFEEDGEEYFRLKEKELLRELVE--- 68 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHc-CCeEEECcHHHH---HH------cCCCHHHHHHHhhhHHHHHHHHHHHHHHhh---
Confidence 59999999999999999999997 999999999887 32 2223334332 3442222233333333222
Q ss_pred cCCCcEEEEeC--CCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-----ccCCCCCHHHHHHHHHHHHHHhHHHHHHhh
Q psy11031 306 YTEADGIVIDG--FPREMSQLIDFENKYQIHPPMILIDCSKLVLH-----KGQIDNSVSAFRRRLELFRERTLPMLRAMD 378 (520)
Q Consensus 306 ~~~~~G~ILDG--FPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-----r~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~ 378 (520)
....+|-.| .+.+..+.+.|.+ ..+|||+++.+.+. ++|+--... ..++....+ .-...|+
T Consensus 69 --~~~~Vis~Gggvv~~~~~r~~l~~-----~~vI~L~as~e~l~~Rl~~~~RPLl~~~--~e~l~~L~~---~R~~lY~ 136 (488)
T PRK13951 69 --RDNVVVATGGGVVIDPENRELLKK-----EKTLFLYAPPEVLMERVTTENRPLLREG--KERIREIWE---RRKQFYT 136 (488)
T ss_pred --cCCEEEECCCccccChHHHHHHhc-----CeEEEEECCHHHHHHHhccCCCCCcccc--HHHHHHHHH---HHHHHHh
Confidence 112222233 2334455555543 34999999987642 234311110 122222222 2234554
Q ss_pred hCCCEEEEECCC-CHHHHHHHH
Q psy11031 379 VETRLTIVDGDT-QLPQVREEF 399 (520)
Q Consensus 379 ~~~~l~~IDa~~-~~e~V~~~I 399 (520)
+ +..||.+. +++++.++|
T Consensus 137 ~---~~~IDt~~~s~~e~~~~i 155 (488)
T PRK13951 137 E---FRGIDTSKLNEWETTALV 155 (488)
T ss_pred c---ccEEECCCCCHHHHHHHH
Confidence 3 24688764 466665544
No 120
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.48 E-value=6.5e-07 Score=87.81 Aligned_cols=37 Identities=19% Similarity=0.457 Sum_probs=34.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR 262 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr 262 (520)
+.+|.|.||+||||||+++.|++++ |+.+++.|+++|
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~-~~~~~~~g~~~r 38 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKL-GYAYLDSGAMYR 38 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh-CCceeeCchHHH
Confidence 3679999999999999999999998 999999999987
No 121
>PRK13973 thymidylate kinase; Provisional
Probab=98.47 E-value=1.7e-06 Score=84.45 Aligned_cols=143 Identities=11% Similarity=0.077 Sum_probs=95.8
Q ss_pred ccCcccCcHHHHHHHHHHccCCCCCC-----------CCHHHHHHHHHHHHhcCCC--CCcEE-----EeCCCCCHH--h
Q psy11031 12 LDFPSHRNPLKMFNLFVSEEVKDFSF-----------LSSKTVTEVLMLEMKMSPA--AKAFL-----ISGYPRNMR--D 71 (520)
Q Consensus 12 ~~~~~h~s~G~~l~~~i~~G~~~g~l-----------VPdelv~~ll~~~l~~~~~--~~G~I-----LDGFPRt~~--Q 71 (520)
...|.....|+.++.++..+... .+ .+.+.+.++|...+....- ...|+ .+|+++... +
T Consensus 37 ~~~p~~~~~g~~ir~~l~~~~~~-~~~~~~~~ll~~a~r~~~~~~~i~~~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~ 115 (213)
T PRK13973 37 TREPGGSPGAEAIRHVLLSGAAE-LYGPRMEALLFAAARDDHVEEVIRPALARGKIVLCDRFIDSTRAYQGVTGNVDPAL 115 (213)
T ss_pred EECCCCCchHHHHHHHHcCCCcc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEcchhhhHHHHcccccCCCHHH
Confidence 34566677899999988764210 01 1224445556666653221 34455 788888654 5
Q ss_pred HHHHHHh---cCCcCEEEEEEcCHHHHHHHh-hhCccC--Cccc---hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeC
Q psy11031 72 VVEYSDK---IKTINGVILIAWRQSLLERQI-DYGAKL--GHVI---LSLARMELANFYQNVTPVTDFFDQRGMLIAVNG 142 (520)
Q Consensus 72 A~~~~~~---~~~pd~VI~L~~pd~~l~~Rl-~rg~~~--~r~d---~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida 142 (520)
+..+... ...||+||+|+||.+++.+|+ .|+... .|.+ .+..+++.+.|.+.. +.|. +.++.|||
T Consensus 116 ~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~~~~~e~~~~~~~~~~~~~y~~l~----~~~~--~~~~~Ida 189 (213)
T PRK13973 116 LAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSDTPDRFEKEDLAFHEKRREAFLQIA----AQEP--ERCVVIDA 189 (213)
T ss_pred HHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCCccCchhhchHHHHHHHHHHHHHHH----HhCC--CcEEEEcC
Confidence 5444432 257999999999999999999 454321 3443 456677888888733 4454 34899999
Q ss_pred CCChHHHHHHHHHHHHHHh
Q psy11031 143 ERNPVEVYADFRTAVLKIL 161 (520)
Q Consensus 143 ~~~~eeV~~~i~~~l~~~~ 161 (520)
++++++|+.+|..++...+
T Consensus 190 ~~~~e~V~~~I~~~i~~~~ 208 (213)
T PRK13973 190 TASPEAVAAEIWAAVDQRL 208 (213)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 9999999999999998765
No 122
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.47 E-value=3.4e-06 Score=80.82 Aligned_cols=162 Identities=16% Similarity=0.185 Sum_probs=92.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcc--------hHHHHhhhhcCCccchHH---
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGL--------NSRIKSSVSAGDFVNRDV--- 292 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~--------g~~i~~~l~~G~~vPd~l--- 292 (520)
.++.|+|+||+||||+|++++|.+.++++ +.++..--| . ...+..- -+.....+..|+.+--..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~-~~~v~~TTR---~-~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g 77 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDF-LFSISCTTR---A-PRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHD 77 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCcc-ccccCccCC---C-CCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECC
Confidence 47889999999999999999999987554 455544444 1 1122111 123444444444332210
Q ss_pred -----HHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCCh-hh-hh--ccCCCCCHHHHHHHH
Q psy11031 293 -----VLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSK-LV-LH--KGQIDNSVSAFRRRL 363 (520)
Q Consensus 293 -----v~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~-~~-~~--r~R~dD~~e~~~~Rl 363 (520)
-.+-+...+. .++.+|+|--+.. +..+.+.+.....+||+.+|. +. .. +.|..++.+.+++|+
T Consensus 78 ~~YGt~~~~i~~~~~-----~g~~~i~d~~~~g---~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~~s~e~i~~Rl 149 (186)
T PRK14737 78 NYYGTPKAFIEDAFK-----EGRSAIMDIDVQG---AKIIKEKFPERIVTIFIEPPSEEEWEERLIHRGTDSEESIEKRI 149 (186)
T ss_pred eeecCcHHHHHHHHH-----cCCeEEEEcCHHH---HHHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHH
Confidence 0122233333 4677899975444 444444433222578888865 32 22 356666888999999
Q ss_pred HHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031 364 ELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK 405 (520)
Q Consensus 364 ~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~ 405 (520)
+...... + +...-.. +|+.+ +.++..+++.+.|..
T Consensus 150 ~~~~~e~----~-~~~~~D~-vI~N~-dle~a~~ql~~ii~~ 184 (186)
T PRK14737 150 ENGIIEL----D-EANEFDY-KIIND-DLEDAIADLEAIICG 184 (186)
T ss_pred HHHHHHH----h-hhccCCE-EEECc-CHHHHHHHHHHHHhc
Confidence 8643221 2 1111123 45556 888888888877653
No 123
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=98.43 E-value=3.3e-06 Score=84.22 Aligned_cols=162 Identities=15% Similarity=0.226 Sum_probs=97.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh------cCCccch---------
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS------AGDFVNR--------- 290 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~------~G~~vPd--------- 290 (520)
.+|.|.|+.||||||+++.|.+++ |++.|+++.+.+ +....+++....+.+.+. +|. +.-
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~-G~~viDaD~iar---~l~~~~~~~~~~i~~~Fg~~i~~~dg~-idR~~L~~~VF~ 76 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEH-HIEVIDADLVVR---ELQAPNMACTRKIAARWPLCVHPETGE-LNRAELGKIIFS 76 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc-CCeEEehHHHHH---HHHcCChHHHHHHHHHhchhhcCCCCc-CCHHHHHHHHhC
Confidence 479999999999999999999987 999999999999 555566555555554431 222 111
Q ss_pred ---------HHHHHHHH----HHHhcc-------cc-CC-CcEEEEeCCCCCHHHHHHHHhhc--CCCCCEEEecCChhh
Q psy11031 291 ---------DVVLDIVY----AEMKKT-------KY-TE-ADGIVIDGFPREMSQLIDFENKY--QIHPPMILIDCSKLV 346 (520)
Q Consensus 291 ---------~lv~~ll~----~~l~~~-------~~-~~-~~G~ILDGFPrt~~Qae~l~~~~--~~p~~VI~Ld~~~~~ 346 (520)
.++...+. +++.+. .. .. ..-+|+|. +..||..+ ..++.+++++|+.+.
T Consensus 77 d~~~~~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~ev-------PLL~E~~~~~~~~D~iv~V~a~~e~ 149 (244)
T PTZ00451 77 DAQARRALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDA-------PTLFETKTFTYFVSASVVVSCSEER 149 (244)
T ss_pred CHHHHHHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEe-------chhhccCchhhcCCeEEEEECCHHH
Confidence 11111111 112100 00 01 12456664 12234322 135789999999986
Q ss_pred hh---ccCCCCCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECC--CCHHHHHHHHHHHHHH
Q psy11031 347 LH---KGQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGD--TQLPQVREEFERVLKK 405 (520)
Q Consensus 347 ~~---r~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~--~~~e~V~~~I~~~I~~ 405 (520)
.. ..|...+.+.+++|+.. +. +..+ ...... .+|+.+ .+.+++.+++...+..
T Consensus 150 ri~RL~~R~g~s~eea~~Ri~~---Q~-~~~e-k~~~aD-~VI~N~~~g~~~~L~~~v~~~~~~ 207 (244)
T PTZ00451 150 QIERLRKRNGFSKEEALQRIGS---QM-PLEE-KRRLAD-YIIENDSADDLDELRGSVCDCVAW 207 (244)
T ss_pred HHHHHHHcCCCCHHHHHHHHHh---CC-CHHH-HHHhCC-EEEECCCCCCHHHHHHHHHHHHHH
Confidence 42 24545577888888864 21 1222 222222 357778 8999999999887644
No 124
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.40 E-value=5.1e-06 Score=80.43 Aligned_cols=38 Identities=18% Similarity=0.400 Sum_probs=35.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRY 263 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~ 263 (520)
..+|.|-||.||||||+|+.||+++ ||.|+++|.++|.
T Consensus 4 ~~~IAIDGPagsGKsTvak~lA~~L-g~~yldTGamYRa 41 (222)
T COG0283 4 AIIIAIDGPAGSGKSTVAKILAEKL-GFHYLDTGAMYRA 41 (222)
T ss_pred ceEEEEeCCCccChHHHHHHHHHHh-CCCeecccHHHHH
Confidence 3789999999999999999999998 9999999999993
No 125
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.39 E-value=7.7e-06 Score=79.23 Aligned_cols=41 Identities=17% Similarity=0.445 Sum_probs=33.5
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCC--CCeeeehhhHHh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYP--NWTQISLGKLLR 262 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~--g~~~is~gdLlr 262 (520)
..++.+|.|.|++||||||+|+.|++.+. .+..++.++.+.
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~ 45 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYK 45 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcccc
Confidence 35789999999999999999999999861 345678877665
No 126
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=98.37 E-value=6.8e-06 Score=87.68 Aligned_cols=173 Identities=14% Similarity=0.200 Sum_probs=98.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhc------CCccch---------
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSA------GDFVNR--------- 290 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~------G~~vPd--------- 290 (520)
.+|.|.|++||||||+|+.|++ + |+..|+++.+.+ +....++..-..+.+.+.. |. +.-
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~-G~~vidaD~i~~---~l~~~~~~~~~~i~~~fG~~il~~~G~-idr~~L~~~vF~ 75 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-L-GAVVVDADVLAR---EVVEPGTEGLAALVAAFGDDILLADGA-LDRPALAAKAFA 75 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-C-CCeEEehHHHHH---HHhcCChHHHHHHHHHhChHhcCCCCc-CCHHHHHHHHhC
Confidence 3699999999999999999987 6 999999999998 5554444333333333321 21 111
Q ss_pred ---------HHHHHHHHHHHhcc-ccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-c--cCCCCCHH
Q psy11031 291 ---------DVVLDIVYAEMKKT-KYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-K--GQIDNSVS 357 (520)
Q Consensus 291 ---------~lv~~ll~~~l~~~-~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r--~R~dD~~e 357 (520)
.++...+..++.+. ....+..+|+.+-|.=.+- .+. ...+.+|+++||.+.+. | .|..-+.+
T Consensus 76 ~~~~~~~le~i~hP~I~~~i~~~i~~~~~~~vvv~eipLL~E~--~~~---~~~D~iI~V~ap~e~ri~Rl~~rRg~s~~ 150 (395)
T PRK03333 76 DDEARAVLNGIVHPLVGARRAELIAAAPEDAVVVEDIPLLVES--GMA---PLFHLVVVVDADVEVRVRRLVEQRGMAEA 150 (395)
T ss_pred CHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecC--Cch---hhCCEEEEEECCHHHHHHHHHhcCCCCHH
Confidence 12222222222210 0112345777665532111 011 12467999999998642 1 22233444
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhhcC
Q psy11031 358 AFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDDLENTAR 415 (520)
Q Consensus 358 ~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~~~~~~~~ 415 (520)
....|+..... . +...... -++|+.+.+.+++..++...+...+.....+.+
T Consensus 151 ~a~~ri~~Q~~----~-e~k~~~A-D~vIdN~~s~e~l~~~v~~~l~~~~~~~~~~~~ 202 (395)
T PRK03333 151 DARARIAAQAS----D-EQRRAVA-DVWLDNSGTPDELVEAVRALWADRLLPFAHNLR 202 (395)
T ss_pred HHHHHHHhcCC----h-HHHHHhC-CEEEECCCCHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 44555543211 1 1111111 256889999999999999888887766555444
No 127
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=98.33 E-value=5.8e-06 Score=91.98 Aligned_cols=164 Identities=11% Similarity=0.072 Sum_probs=86.7
Q ss_pred ccCCCCCeEEEEEcCCCCChhHHHHHHHhhCCCC------eeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHH
Q psy11031 219 SVERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNW------TQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDV 292 (520)
Q Consensus 219 ~~~~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~------~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~l 292 (520)
+++...+..|+|+|.|||||||+|+.|++.+ +. .+++. |.+| +....+......-+ +..
T Consensus 386 ~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L-~~~~g~~~~~lD~-D~vr---~~l~ge~~f~~~er----------~~~ 450 (568)
T PRK05537 386 PPRHKQGFTVFFTGLSGAGKSTIAKALMVKL-MEMRGRPVTLLDG-DVVR---KHLSSELGFSKEDR----------DLN 450 (568)
T ss_pred ccccCCCeEEEEECCCCChHHHHHHHHHHHh-hhccCceEEEeCC-cHHH---HhccCCCCCCHHHH----------HHH
Confidence 4456778899999999999999999999987 75 56655 5667 33322111110000 011
Q ss_pred HHHHH--HHHHhccccCCCcEEEEeC-CCCCH--HHHHHHHhhcCCCCCEEEecCChhhhhccCCCCCHHHH-HHHHHHH
Q psy11031 293 VLDIV--YAEMKKTKYTEADGIVIDG-FPREM--SQLIDFENKYQIHPPMILIDCSKLVLHKGQIDNSVSAF-RRRLELF 366 (520)
Q Consensus 293 v~~ll--~~~l~~~~~~~~~G~ILDG-FPrt~--~Qae~l~~~~~~p~~VI~Ld~~~~~~~r~R~dD~~e~~-~~Rl~~f 366 (520)
+..+. ...+ ...+.++|+|- ||... .....+-+..+ ...+|||+++.+.+.++.... .+ +.+....
T Consensus 451 ~~~l~~~a~~v----~~~Gg~vI~~~~~p~~~~R~~nr~llk~~g-~fivV~L~~p~e~l~~R~rr~---Ll~~~~~~~i 522 (568)
T PRK05537 451 ILRIGFVASEI----TKNGGIAICAPIAPYRATRREVREMIEAYG-GFIEVHVATPLEVCEQRDRKG---LYAKAREGKI 522 (568)
T ss_pred HHHHHHHHHHH----HhCCCEEEEEeCCchHHHHHHHHHHHhhcC-CEEEEEEcCCHHHHHHhcccc---ccccchhchh
Confidence 11111 1112 23567888885 55442 22222222111 124799999987653321110 11 1111222
Q ss_pred HHHhHHHHHHhhhCCCEEEEECC-CCHHHHHHHHHHHHHH
Q psy11031 367 RERTLPMLRAMDVETRLTIVDGD-TQLPQVREEFERVLKK 405 (520)
Q Consensus 367 ~~~~~~l~~~y~~~~~l~~IDa~-~~~e~V~~~I~~~I~~ 405 (520)
+.....-..||....--++||.+ .+++++.+.|...|..
T Consensus 523 ~~l~~~R~~yy~p~~Adl~IDt~~~s~~eiv~~Il~~L~~ 562 (568)
T PRK05537 523 KGFTGISDPYEPPANPELVIDTTNVTPDECAHKILLYLEE 562 (568)
T ss_pred hccccccccccCCCCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 22211223466422223578877 5899999988877753
No 128
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.30 E-value=1.2e-05 Score=77.37 Aligned_cols=159 Identities=14% Similarity=0.178 Sum_probs=83.4
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCC----CCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccc---hHHHH
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYP----NWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVN---RDVVL 294 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~----g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vP---d~lv~ 294 (520)
..+|.+|+|+|.+||||||+++.|+..+. +..+++. +-++ ...... . | +.+ .+.+.
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~-d~~~---~~~~~~--~----------~-~~~~~~~~~~~ 83 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDG-DNVR---HGLCSD--L----------G-FSDADRKENIR 83 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcC-EeHH---hhhhhc--C----------C-cCcccHHHHHH
Confidence 35688999999999999999999998641 3444544 3333 111110 0 0 111 12222
Q ss_pred HHHHHHHhccccCCCcEEEEeCCCC-CHHHHHHHHhhcCCCCC-EEEecCChhhhhccCCCCCHHHHH-HHHHHHHHHhH
Q psy11031 295 DIVYAEMKKTKYTEADGIVIDGFPR-EMSQLIDFENKYQIHPP-MILIDCSKLVLHKGQIDNSVSAFR-RRLELFRERTL 371 (520)
Q Consensus 295 ~ll~~~l~~~~~~~~~G~ILDGFPr-t~~Qae~l~~~~~~p~~-VI~Ld~~~~~~~r~R~dD~~e~~~-~Rl~~f~~~~~ 371 (520)
.+... .. ........||..|.. ...+.+.+.+.+..... +|||+|+.+.+.++ +. ...+. .|...+.. ..
T Consensus 84 ~l~~~-a~--~~~~~G~~VI~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~~e~~~~R--~~-r~l~~~~~~~~~~~-l~ 156 (198)
T PRK03846 84 RVGEV-AK--LMVDAGLVVLTAFISPHRAERQMVRERLGEGEFIEVFVDTPLAICEAR--DP-KGLYKKARAGEIRN-FT 156 (198)
T ss_pred HHHHH-HH--HHhhCCCEEEEEeCCCCHHHHHHHHHHcccCCEEEEEEcCCHHHHHhc--Cc-hhHHHHhhcCCccC-cc
Confidence 22111 11 111223456667765 34555666666655454 79999999876443 11 11111 11111111 11
Q ss_pred HHHHHhh--hCCCEEEEEC-CCCHHHHHHHHHHHHHH
Q psy11031 372 PMLRAMD--VETRLTIVDG-DTQLPQVREEFERVLKK 405 (520)
Q Consensus 372 ~l~~~y~--~~~~l~~IDa-~~~~e~V~~~I~~~I~~ 405 (520)
.....|+ .... ++||. +.+++++.++|...|.+
T Consensus 157 ~~r~~Y~~p~~ad-~~Idt~~~~~~~vv~~Il~~l~~ 192 (198)
T PRK03846 157 GIDSVYEAPESPE-IHLDTGEQLVTNLVEQLLDYLRQ 192 (198)
T ss_pred cccccCCCCCCCC-EEEECCCCCHHHHHHHHHHHHHH
Confidence 1222355 2222 56884 67899999988887753
No 129
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.29 E-value=6.5e-06 Score=77.41 Aligned_cols=160 Identities=10% Similarity=0.082 Sum_probs=78.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCC----CCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHH--HH
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYP----NWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLD--IV 297 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~----g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~--ll 297 (520)
.+.+|+|.|.|||||||+|+.|+..+. ++.+++.+.+ + +....+..... .. .+..+.. .+
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~-~---~~~~~~~~~~~--------~~--r~~~~~~~~~~ 68 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV-R---TNLSKGLGFSK--------ED--RDTNIRRIGFV 68 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH-H---HHHhcCCCCCh--------hh--HHHHHHHHHHH
Confidence 467899999999999999999998641 2455665433 4 22111110000 00 0011111 11
Q ss_pred HHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhccCCCCCHHHHH-HHHHHHHHHhHHHHHH
Q psy11031 298 YAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHKGQIDNSVSAFR-RRLELFRERTLPMLRA 376 (520)
Q Consensus 298 ~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r~R~dD~~e~~~-~Rl~~f~~~~~~l~~~ 376 (520)
...+. ..+..+|+|+.-......+.+.... ....+|+|+|+.+.+.++. ....++ .|.+........-..+
T Consensus 69 a~~~~----~~g~~vi~~~~~~~~~~~~~l~~~~-~~~~~v~l~~~~e~~~~R~---~~~l~~~~~~~~i~~~~~~~~~~ 140 (175)
T PRK00889 69 ANLLT----RHGVIVLVSAISPYRETREEVRANI-GNFLEVFVDAPLEVCEQRD---VKGLYAKARAGEIKHFTGIDDPY 140 (175)
T ss_pred HHHHH----hCCCEEEEecCCCCHHHHHHHHhhc-CCeEEEEEcCCHHHHHHhC---cccHHHHHHcCCCCCCcccCCCC
Confidence 22122 2345677776422234444444433 2345899999988654332 111111 1111111000111234
Q ss_pred hhh-CCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031 377 MDV-ETRLTIVDGDTQLPQVREEFERVLKK 405 (520)
Q Consensus 377 y~~-~~~l~~IDa~~~~e~V~~~I~~~I~~ 405 (520)
|.. ...+.......+++++.++|...|..
T Consensus 141 ~~p~~ad~~i~~~~~~~~~~~~~i~~~l~~ 170 (175)
T PRK00889 141 EPPLNPEVECRTDLESLEESVDKVLQKLEE 170 (175)
T ss_pred CCCCCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 432 12344334556899998888887753
No 130
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=98.28 E-value=1.2e-05 Score=75.35 Aligned_cols=152 Identities=16% Similarity=0.139 Sum_probs=79.2
Q ss_pred EcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchH---HHHHHHHHHHhccccC
Q psy11031 231 VGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRD---VVLDIVYAEMKKTKYT 307 (520)
Q Consensus 231 lG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~---lv~~ll~~~l~~~~~~ 307 (520)
+|++||||||+++.|++.+ |..+++.+.+.. ... +.. +..|....+. .....+..........
T Consensus 1 ~G~sGsGKSTla~~la~~l-~~~~~~~d~~~~---~~~---------~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQL-HAAFLDGDFLHP---RRN---------IEK-MASGEPLNDDDRKPWLQALNDAAFAMQRT 66 (163)
T ss_pred CCCCCCcHHHHHHHHHHHh-CCeEEeCccCCc---hhh---------hcc-ccCCCCCChhhHHHHHHHHHHHHHHHHHc
Confidence 5999999999999999997 999998854421 000 000 0111111110 1111111111100111
Q ss_pred CCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh---ccCCCCCHHHHHHHHHHHHHHhHHHHHHhh-hCCCE
Q psy11031 308 EADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH---KGQIDNSVSAFRRRLELFRERTLPMLRAMD-VETRL 383 (520)
Q Consensus 308 ~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~---r~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~-~~~~l 383 (520)
...++|+-.|.+ ..+.+.+.+ ...+..+|+|+|+.+.+. +.|..+ . .+.+.+..+...+ +-+. ....+
T Consensus 67 ~~~~viv~s~~~-~~~r~~~~~-~~~~~~~v~l~a~~~~l~~Rl~~R~~~-~----a~~~vl~~Q~~~~-ep~~~~e~~~ 138 (163)
T PRK11545 67 NKVSLIVCSALK-KHYRDLLRE-GNPNLSFIYLKGDFDVIESRLKARKGH-F----FKTQMLVTQFETL-QEPGADETDV 138 (163)
T ss_pred CCceEEEEecch-HHHHHHHHc-cCCCEEEEEEECCHHHHHHHHHhccCC-C----CCHHHHHHHHHHc-CCCCCCCCCE
Confidence 234455544432 233333333 444556899999998643 234333 1 1444444443222 2221 11247
Q ss_pred EEEECCCCHHHHHHHHHHHHH
Q psy11031 384 TIVDGDTQLPQVREEFERVLK 404 (520)
Q Consensus 384 ~~IDa~~~~e~V~~~I~~~I~ 404 (520)
+.||++.+++++...+...+.
T Consensus 139 ~~id~~~~~~~~~~~~~~~~~ 159 (163)
T PRK11545 139 LVVDIDQPLEGVVASTIEVIK 159 (163)
T ss_pred EEEeCCCCHHHHHHHHHHHHH
Confidence 889999999988888877774
No 131
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.28 E-value=1.8e-06 Score=98.69 Aligned_cols=36 Identities=22% Similarity=0.373 Sum_probs=34.3
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhh
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRY 263 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~ 263 (520)
+|.|.|||||||||+|+.|++++ |+.++++|.++|.
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l-~~~~~~~g~~~r~ 38 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYL-GYAYLDTGAMYRA 38 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCcEeecCcEeHH
Confidence 69999999999999999999998 9999999999993
No 132
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=98.28 E-value=7.1e-06 Score=78.22 Aligned_cols=147 Identities=14% Similarity=0.251 Sum_probs=81.7
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh------cCCccch----------
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS------AGDFVNR---------- 290 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~------~G~~vPd---------- 290 (520)
+|.|.|+.||||||.|+.|++ + |+..++++++.+ +....+++....+.+.+. +|..-..
T Consensus 2 iIglTG~igsGKStv~~~l~~-~-G~~vidaD~i~~---~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~ 76 (180)
T PF01121_consen 2 IIGLTGGIGSGKSTVSKILAE-L-GFPVIDADEIAH---ELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDP 76 (180)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-T-T-EEEEHHHHHH---HCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSH
T ss_pred EEEEECCCcCCHHHHHHHHHH-C-CCCEECccHHHH---HHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCH
Confidence 689999999999999999988 6 999999999999 666666666666655432 2321111
Q ss_pred -------HHHHHH----HHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhc-CCCCCEEEecCChhhh-hc--cCCCCC
Q psy11031 291 -------DVVLDI----VYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKY-QIHPPMILIDCSKLVL-HK--GQIDNS 355 (520)
Q Consensus 291 -------~lv~~l----l~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~-~~p~~VI~Ld~~~~~~-~r--~R~dD~ 355 (520)
.++..+ +..++. ......-+|+|. |-= |+..+ ...+.|+++.||.+.. .| .|..-+
T Consensus 77 ~~~~~L~~iihP~I~~~~~~~~~--~~~~~~~~v~e~-pLL------~E~~~~~~~D~vi~V~a~~e~ri~Rl~~R~~~~ 147 (180)
T PF01121_consen 77 EKLKKLENIIHPLIREEIEKFIK--RNKSEKVVVVEI-PLL------FESGLEKLCDEVIVVYAPEEIRIKRLMERDGLS 147 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HCHSTSEEEEE--TTT------TTTTGGGGSSEEEEEE--HHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHhHHHHHHHHHHHH--hccCCCEEEEEc-chh------hhhhHhhhhceEEEEECCHHHHHHHHHhhCCCc
Confidence 122222 233333 222235566664 211 11111 2257799999998763 22 344556
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHH
Q psy11031 356 VSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLP 393 (520)
Q Consensus 356 ~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e 393 (520)
.+.+.+|+..-. +..+.-+..+ .+|+.+.+.+
T Consensus 148 ~~~~~~ri~~Q~----~~~~k~~~ad--~vI~N~g~~~ 179 (180)
T PF01121_consen 148 EEEAEARIASQM----PDEEKRKRAD--FVIDNNGSLE 179 (180)
T ss_dssp HHHHHHHHHTS------HHHHHHH-S--EEEE-SSHHH
T ss_pred HHHHHHHHHhCC----CHHHHHHhCC--EEEECCCCCC
Confidence 777777776322 2222222222 3577777755
No 133
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.27 E-value=9.1e-06 Score=78.77 Aligned_cols=42 Identities=19% Similarity=0.410 Sum_probs=33.3
Q ss_pred CCCCCeEEEEEcCCCCChhHHHHHHHhhCC--CCeeeehhhHHh
Q psy11031 221 ERNTPLVVWVVGGPGSSKSEMCQKVLQDYP--NWTQISLGKLLR 262 (520)
Q Consensus 221 ~~~~p~~I~vlG~PGSGKsT~a~~La~k~~--g~~~is~gdLlr 262 (520)
.++.+.+|.|.|++||||||+++.|+..+. .+..++.++.+.
T Consensus 2 ~~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~ 45 (207)
T TIGR00235 2 DKPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYK 45 (207)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEeccccccc
Confidence 456678999999999999999999998762 356777766543
No 134
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.26 E-value=1.1e-05 Score=76.58 Aligned_cols=158 Identities=12% Similarity=0.061 Sum_probs=81.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCC--C--CeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccch---HHHHH
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYP--N--WTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNR---DVVLD 295 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~--g--~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd---~lv~~ 295 (520)
..+.+|+|.|+|||||||+++.|+..+. | ..+++. +-++ .....+. .+.+. ..+..
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~-d~~r---~~l~~~~-------------~~~~~~~~~~~~~ 78 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDG-DNVR---HGLNKDL-------------GFSEEDRKENIRR 78 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECC-hHHH---hhhcccc-------------CCCHHHHHHHHHH
Confidence 4578999999999999999999998741 2 344544 4444 2221111 01111 11111
Q ss_pred HHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCC-CCEEEecCChhhhhccCCCCCHHHHHHHHHHHHHHhHHHH
Q psy11031 296 IVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIH-PPMILIDCSKLVLHKGQIDNSVSAFRRRLELFRERTLPML 374 (520)
Q Consensus 296 ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p-~~VI~Ld~~~~~~~r~R~dD~~e~~~~Rl~~f~~~~~~l~ 374 (520)
+. .... .....+..+|+|..-....+.+.+....... ..+|+|+|+.+.+.++ +...-..+.+...+... ....
T Consensus 79 ~~-~~~~-~~~~~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R--~~~~l~~~~~~~~~~~l-~~~~ 153 (184)
T TIGR00455 79 IG-EVAK-LFVRNGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQR--DPKGLYKKARNGEIKGF-TGID 153 (184)
T ss_pred HH-HHHH-HHHcCCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHh--CchhHHHHHhcCCccCc-cccc
Confidence 11 1111 0123467889997433455555555544432 3479999998865433 11110111111111111 1122
Q ss_pred H-HhhhCCCEEEEECC-CCHHHHHHHHHHH
Q psy11031 375 R-AMDVETRLTIVDGD-TQLPQVREEFERV 402 (520)
Q Consensus 375 ~-~y~~~~~l~~IDa~-~~~e~V~~~I~~~ 402 (520)
. ||....--++||.+ .+++++.+.|...
T Consensus 154 ~~y~~p~~adl~Idt~~~~~~~~~~~i~~~ 183 (184)
T TIGR00455 154 SPYEAPENPEVVLDTDQNDREECVGQIIEK 183 (184)
T ss_pred CCCCCCCCCcEEEECCCCCHHHHHHHHHHh
Confidence 2 34323334778865 5888888877654
No 135
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.21 E-value=5.2e-05 Score=72.02 Aligned_cols=161 Identities=19% Similarity=0.254 Sum_probs=100.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcc--------hHHHHhhhhcCCccchH----
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGL--------NSRIKSSVSAGDFVNRD---- 291 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~--------g~~i~~~l~~G~~vPd~---- 291 (520)
++..|+|.||.|+||||++++|.+.. -.++|++.-.| . ...|..- -+..+.+++.|+.+.=.
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~--~l~~SVS~TTR---~-pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~g 76 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD--KLRFSVSATTR---K-PRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHG 76 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc--CeEEEEEeccC---C-CCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcC
Confidence 46789999999999999999999985 45566665555 2 2223222 23555666666543310
Q ss_pred -H---HHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhh----hhccCCCCCHHHHHHHH
Q psy11031 292 -V---VLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLV----LHKGQIDNSVSAFRRRL 363 (520)
Q Consensus 292 -l---v~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~----~~r~R~dD~~e~~~~Rl 363 (520)
. -..-++..+. .++.+|||= ++.=|....+.++ +-..|||.+|... +.++|..|+.+.+++|+
T Consensus 77 nyYGT~~~~ve~~~~-----~G~~vildI---d~qGa~qvk~~~p-~~v~IFi~pPs~eeL~~RL~~Rgtds~e~I~~Rl 147 (191)
T COG0194 77 NYYGTSREPVEQALA-----EGKDVILDI---DVQGALQVKKKMP-NAVSIFILPPSLEELERRLKGRGTDSEEVIARRL 147 (191)
T ss_pred CcccCcHHHHHHHHh-----cCCeEEEEE---ehHHHHHHHHhCC-CeEEEEEcCCCHHHHHHHHHccCCCCHHHHHHHH
Confidence 0 1122233333 456677762 2444555555543 2336888887743 23478899999999999
Q ss_pred HHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHH
Q psy11031 364 ELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKI 406 (520)
Q Consensus 364 ~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~ 406 (520)
...+.......+ |+ .+. -+.+.+..++++.+.|...
T Consensus 148 ~~a~~Ei~~~~~-fd----yvi--vNdd~e~a~~~l~~ii~ae 183 (191)
T COG0194 148 ENAKKEISHADE-FD----YVI--VNDDLEKALEELKSIILAE 183 (191)
T ss_pred HHHHHHHHHHHh-CC----EEE--ECccHHHHHHHHHHHHHHH
Confidence 988877654433 43 222 4567778888888877654
No 136
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=98.21 E-value=9.8e-06 Score=91.97 Aligned_cols=172 Identities=16% Similarity=0.216 Sum_probs=92.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhc-ccccCCcch--HHHHh-------------hhhcCC
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFAN-IEDDGEGLN--SRIKS-------------SVSAGD 286 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~-~~~~~t~~g--~~i~~-------------~l~~G~ 286 (520)
...++|.|.||+||||||+|+.|++++ |+.|+++|+++|...- ..+.+-.+. ..+.+ .+-+|+
T Consensus 440 ~~~~~i~i~g~~~~gks~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (661)
T PRK11860 440 DRVPVICIDGPTASGKGTVAARVAEAL-GYHYLDSGALYRLTALAALRAGVALDDEAAIAALARGLPVRFEGDRIWLGGE 518 (661)
T ss_pred cCcceEEeeCCCCCCHHHHHHHHHHHh-CCeEecHHHhhhHHHHHHHHcCcCCCCHHHHHHHHhcCCeeecCCeEEECCe
Confidence 335689999999999999999999998 9999999999993210 111221111 11111 111232
Q ss_pred ccch-----------------HHHHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhc
Q psy11031 287 FVNR-----------------DVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHK 349 (520)
Q Consensus 287 ~vPd-----------------~lv~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r 349 (520)
.+.. ..+.+.|..... ...+..++|+||= +.-.. .+...+.=|||+++.+.+.+
T Consensus 519 ~~~~~i~~~~v~~~~s~~a~~~~vr~~l~~~qr--~~~~~~~~v~eGR--digtv-----v~p~a~~kifl~a~~~~Ra~ 589 (661)
T PRK11860 519 DVTDAIRTEAAGMGASRVSALPAVRAALLALQR--SFRRLPGLVADGR--DMGTV-----IFPDAALKVFLTASAEARAE 589 (661)
T ss_pred EchhhhCcHHHHHHHHHHhCCHHHHHHHHHHHH--HHhhCCCEEEECC--CCccE-----ECCCCCeEEEEECChhHHHH
Confidence 2222 122333333333 2333457899983 11100 11112345999999988765
Q ss_pred cCCC--------CCHHHHHHHHH--HHHHHhHHHHHHhhhCCCEEEEECC-CCHHHHHHHHHHHHHH
Q psy11031 350 GQID--------NSVSAFRRRLE--LFRERTLPMLRAMDVETRLTIVDGD-TQLPQVREEFERVLKK 405 (520)
Q Consensus 350 ~R~d--------D~~e~~~~Rl~--~f~~~~~~l~~~y~~~~~l~~IDa~-~~~e~V~~~I~~~I~~ 405 (520)
+|.+ .+.+.+.+.+. .+......+ .-+......+.||.+ .++++|.+.|.+.|..
T Consensus 590 Rr~~~~~~~~~~~~~~~~~~~~~~Rd~~d~~R~~-~pl~~~~da~~idts~~~~~~v~~~i~~~i~~ 655 (661)
T PRK11860 590 RRYKQLISKGISANIADLLADLEARDARDTQRSV-APLKPAQDALLLDNSDLTIEQAVAQVLDWWQE 655 (661)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhHHhhcCCC-CCCccCCCEEEEECCCCCHHHHHHHHHHHHHh
Confidence 4422 12222222221 111111111 111122345778876 4999999999888753
No 137
>PRK06547 hypothetical protein; Provisional
Probab=98.20 E-value=3e-06 Score=80.21 Aligned_cols=40 Identities=18% Similarity=0.289 Sum_probs=36.1
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR 262 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr 262 (520)
...+.+|.|.|++||||||+|+.|++.+ ++..++++++..
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~-~~~~~~~d~~~~ 51 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAART-GFQLVHLDDLYP 51 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHh-CCCeecccceec
Confidence 3457889999999999999999999997 999999998877
No 138
>PRK01184 hypothetical protein; Provisional
Probab=98.18 E-value=6.2e-05 Score=71.28 Aligned_cols=142 Identities=11% Similarity=0.035 Sum_probs=94.3
Q ss_pred ccCcccCcHHHHHHHHHHc-cCCC-------------CCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHH
Q psy11031 12 LDFPSHRNPLKMFNLFVSE-EVKD-------------FSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSD 77 (520)
Q Consensus 12 ~~~~~h~s~G~~l~~~i~~-G~~~-------------g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~ 77 (520)
++++ |+++|+.++..+.+ |... ..+.+ .++..++..++.. .+...+|+||| |+..|+..+.+
T Consensus 24 ~g~~-~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~i~~-~~~~~vvidg~-r~~~e~~~~~~ 99 (184)
T PRK01184 24 MGIP-VVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKELGM-DAVAKRTVPKIRE-KGDEVVVIDGV-RGDAEVEYFRK 99 (184)
T ss_pred cCCc-EEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHCh-HHHHHHHHHHHHh-cCCCcEEEeCC-CCHHHHHHHHH
Confidence 4677 89999999998854 3210 11222 3444555555643 35678999999 89999966655
Q ss_pred hcCCcCEEEEEEcCHHHHHHHhh-hCccCCccchHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHH
Q psy11031 78 KIKTINGVILIAWRQSLLERQID-YGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTA 156 (520)
Q Consensus 78 ~~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~ 156 (520)
......++|+++||+++..+|+. |+......+.+.+.+|+..... .++-+.|.... +.||-+.+.++++++|..+
T Consensus 100 ~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~~~~r~~~q~~--~~~~~~~~~ad--~vI~N~~~~~~l~~~v~~~ 175 (184)
T PRK01184 100 EFPEDFILIAIHAPPEVRFERLKKRGRSDDPKSWEELEERDERELS--WGIGEVIALAD--YMIVNDSTLEEFRARVRKL 175 (184)
T ss_pred hCCcccEEEEEECCHHHHHHHHHHcCCCCChhhHHHHHHHHHHHhc--cCHHHHHHhcC--EEEeCCCCHHHHHHHHHHH
Confidence 54446789999999999999994 4321111236667777765432 33555664443 4456667899999999998
Q ss_pred HHHHh
Q psy11031 157 VLKIL 161 (520)
Q Consensus 157 l~~~~ 161 (520)
+..++
T Consensus 176 ~~~~~ 180 (184)
T PRK01184 176 LERIL 180 (184)
T ss_pred HHHHh
Confidence 87655
No 139
>PRK08356 hypothetical protein; Provisional
Probab=98.17 E-value=2.3e-05 Score=75.25 Aligned_cols=120 Identities=13% Similarity=0.168 Sum_probs=76.3
Q ss_pred HHHHccCCCCCCCCH----HHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHhh-
Q psy11031 26 LFVSEEVKDFSFLSS----KTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQID- 100 (520)
Q Consensus 26 ~~i~~G~~~g~lVPd----elv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl~- 100 (520)
.+++.|. ++|+ +++++++.+++.. +. .|+|||| |+..|+..|... ...||+|+||.+++.+|+.
T Consensus 66 ~~~e~g~----~~~~~yG~~~~~~~~~~~~~~--~~-~ividG~-r~~~q~~~l~~~---~~~vi~l~~~~~~~~~Rl~~ 134 (195)
T PRK08356 66 NLIELGR----YLKEKYGEDILIRLAVDKKRN--CK-NIAIDGV-RSRGEVEAIKRM---GGKVIYVEAKPEIRFERLRR 134 (195)
T ss_pred cHHHHHH----HHHHhcCcHHHHHHHHHHhcc--CC-eEEEcCc-CCHHHHHHHHhc---CCEEEEEECCHHHHHHHHHh
Confidence 5555666 8885 8888888888842 33 5999999 999999766542 2589999999999999994
Q ss_pred hCccCCcc---chHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHHHHHH
Q psy11031 101 YGAKLGHV---ILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLKI 160 (520)
Q Consensus 101 rg~~~~r~---d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l~~~ 160 (520)
|+.. .+. +.+.+ +|+...........++...-. ++.+| +.+.+++.++|.+++..+
T Consensus 135 R~~~-~~~~~~~~e~~-~~~~~~~~~l~~~~~~~~~aD-~vI~N-~~~~e~~~~~i~~~~~~~ 193 (195)
T PRK08356 135 RGAE-KDKGIKSFEDF-LKFDEWEEKLYHTTKLKDKAD-FVIVN-EGTLEELRKKVEEILREL 193 (195)
T ss_pred cCCc-cccccccHHHH-HHHHHHHHHhhhhhhHHHhCc-EEEEC-CCCHHHHHHHHHHHHHHh
Confidence 5432 111 23333 233222222111112222122 33355 679999999999988753
No 140
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.13 E-value=1.2e-05 Score=77.28 Aligned_cols=158 Identities=20% Similarity=0.253 Sum_probs=82.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCC--CCeeeehhh-HHhhhhcccccCCcchH---HHHhhhhcCCccchHHHHHHHHH
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYP--NWTQISLGK-LLRYFANIEDDGEGLNS---RIKSSVSAGDFVNRDVVLDIVYA 299 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~--g~~~is~gd-Llr~~~~~~~~~t~~g~---~i~~~l~~G~~vPd~lv~~ll~~ 299 (520)
+.|++.|+|||||||.|+.|++.+- ++..++.+. .++ -.. ....++. ..++.+. +-+..++..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~---~i~-~DEslpi~ke~yres~~-------ks~~rlldS 70 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLR---GIL-WDESLPILKEVYRESFL-------KSVERLLDS 70 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhh---hee-cccccchHHHHHHHHHH-------HHHHHHHHH
Confidence 4689999999999999999887531 444444443 222 111 1111111 1111111 122234444
Q ss_pred HHhccccCCCcEEEEeC--CCCC-HHHHHHHHhhcCCCCCEEEecCChhhhhc---cCCCCC-HHHHHHHHHHHHHHhHH
Q psy11031 300 EMKKTKYTEADGIVIDG--FPRE-MSQLIDFENKYQIHPPMILIDCSKLVLHK---GQIDNS-VSAFRRRLELFRERTLP 372 (520)
Q Consensus 300 ~l~~~~~~~~~G~ILDG--FPrt-~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r---~R~dD~-~e~~~~Rl~~f~~~~~~ 372 (520)
+++ +.-+|.|. |=.. ..|..........+.+||++.|+.+++-+ .|..-- +|.+++-++.|.+- .+
T Consensus 71 alk------n~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~ergepip~Evl~qly~RfEeP-n~ 143 (261)
T COG4088 71 ALK------NYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRERGEPIPEEVLRQLYDRFEEP-NP 143 (261)
T ss_pred Hhc------ceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccCCCCCCHHHHHHHHHhhcCC-CC
Confidence 443 45567773 3222 33444444445566789999999986532 233322 44444434443322 11
Q ss_pred HHHHhhhCCCEEEEECCCCHHHHHHHHHHHHH
Q psy11031 373 MLRAMDVETRLTIVDGDTQLPQVREEFERVLK 404 (520)
Q Consensus 373 l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~ 404 (520)
.. .++ .-+.+||......++.+.|++.+.
T Consensus 144 ~~-rWD--spll~id~~d~~t~~IDfiesvl~ 172 (261)
T COG4088 144 DR-RWD--SPLLVIDDSDVSTEVIDFIESVLR 172 (261)
T ss_pred Cc-ccc--CceEEEecccccccchhHHHHHHH
Confidence 11 111 246778866666677777777665
No 141
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.12 E-value=3e-05 Score=87.66 Aligned_cols=163 Identities=12% Similarity=0.053 Sum_probs=84.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhC----CCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHH
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDY----PNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVY 298 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~----~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~ 298 (520)
.+|.+|++.|.|||||||+|+.|++++ .++.+++. |.+| ..+..+......-+ ...+..+..
T Consensus 458 ~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~-D~~r---~~l~~~~~~~~~~r----------~~~~~~l~~ 523 (632)
T PRK05506 458 QKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDG-DNVR---HGLNRDLGFSDADR----------VENIRRVAE 523 (632)
T ss_pred CCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcC-hhhh---hccCCCCCCCHHHH----------HHHHHHHHH
Confidence 458999999999999999999999884 13456665 5566 33221111111000 112222222
Q ss_pred HHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCC-CCCEEEecCChhhhhccCCCCCHHHH-HHHHHHHHHHhHHHH-H
Q psy11031 299 AEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQI-HPPMILIDCSKLVLHKGQIDNSVSAF-RRRLELFRERTLPML-R 375 (520)
Q Consensus 299 ~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~-p~~VI~Ld~~~~~~~r~R~dD~~e~~-~~Rl~~f~~~~~~l~-~ 375 (520)
.... ....+..+|+|..--...+.+.+.+.... +..+|||+++.+.+.++ +. ...+ +.+...+... ..+. .
T Consensus 524 ~a~~--~~~~G~~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R--~~-r~L~~~~~~~~l~~l-~~~r~~ 597 (632)
T PRK05506 524 VARL--MADAGLIVLVSFISPFREERELARALHGEGEFVEVFVDTPLEVCEAR--DP-KGLYAKARAGEIKNF-TGIDSP 597 (632)
T ss_pred HHHH--HHhCCCEEEEECCCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhh--CC-cchhhhccccccccc-cccccC
Confidence 1111 12235668888632223333444443332 33689999998875432 11 1122 1122222211 1111 2
Q ss_pred HhhhCCCEEEEEC-CCCHHHHHHHHHHHHHH
Q psy11031 376 AMDVETRLTIVDG-DTQLPQVREEFERVLKK 405 (520)
Q Consensus 376 ~y~~~~~l~~IDa-~~~~e~V~~~I~~~I~~ 405 (520)
|+....--++||. +.+++++.+.|...|..
T Consensus 598 y~~P~~a~~~Id~~~~s~~e~v~~Ii~~l~~ 628 (632)
T PRK05506 598 YEAPENPELRLDTTGRSPEELAEQVLELLRR 628 (632)
T ss_pred CCCCCCCeEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3321223467886 67899999998887754
No 142
>PRK12338 hypothetical protein; Provisional
Probab=98.11 E-value=0.00014 Score=75.02 Aligned_cols=39 Identities=18% Similarity=0.337 Sum_probs=35.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRY 263 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~ 263 (520)
.|.+|+|.|+|||||||+|+.||+++ |+.|+..+|.+|+
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l-~~~~~~~tD~~r~ 41 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTL-NIKHLIETDFIRE 41 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHC-CCeEEccChHHHH
Confidence 47899999999999999999999997 9999988899983
No 143
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.11 E-value=2.2e-05 Score=74.49 Aligned_cols=165 Identities=18% Similarity=0.271 Sum_probs=89.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcc----hHHHHhhhhcCCccch--------HH
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGL----NSRIKSSVSAGDFVNR--------DV 292 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~----g~~i~~~l~~G~~vPd--------~l 292 (520)
++.|+|+||+||||+|++++|.+.+++.....+..-.|.--.....|... -+.+...+..|+.+-- -+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YGt 81 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYGT 81 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhhh
Confidence 46799999999999999999999874332222222222000111112111 1233333333332221 00
Q ss_pred HHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCCh-hhhh---ccCCCCCHHHHHHHHHHHHH
Q psy11031 293 VLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSK-LVLH---KGQIDNSVSAFRRRLELFRE 368 (520)
Q Consensus 293 v~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~-~~~~---r~R~dD~~e~~~~Rl~~f~~ 368 (520)
...-+...+. .++..|||-= .+-+..|... ...+.+||+.++. +.+. ++|.+++.+.+.+|+.....
T Consensus 82 ~~~~i~~~~~-----~gk~~il~~~---~~g~~~L~~~-~~~~~~IfI~~~s~~~l~~~l~~r~~~~~~~i~~r~~~~~~ 152 (183)
T PF00625_consen 82 SKSAIDKVLE-----EGKHCILDVD---PEGVKQLKKA-GFNPIVIFIKPPSPEVLKRRLRRRGDESEEEIEERLERAEK 152 (183)
T ss_dssp EHHHHHHHHH-----TTTEEEEEET---HHHHHHHHHC-TTTEEEEEEEESSHHHHHHHHHTTTHCHHHHHHHHHHHHHH
T ss_pred ccchhhHhhh-----cCCcEEEEcc---HHHHHHHHhc-ccCceEEEEEccchHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 1122233333 4667888754 4455566655 4456689998765 3322 34556667778888876654
Q ss_pred HhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031 369 RTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK 405 (520)
Q Consensus 369 ~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~ 405 (520)
.. ++|.. -.. +|.. .+.++.+++|.+.|..
T Consensus 153 ~~----~~~~~-fd~-vi~n-~~le~~~~~l~~ii~~ 182 (183)
T PF00625_consen 153 EF----EHYNE-FDY-VIVN-DDLEEAVKELKEIIEQ 182 (183)
T ss_dssp HH----GGGGG-SSE-EEEC-SSHHHHHHHHHHHHHH
T ss_pred HH----hHhhc-CCE-EEEC-cCHHHHHHHHHHHHHh
Confidence 32 33432 223 3443 4899999999888865
No 144
>PRK03839 putative kinase; Provisional
Probab=98.10 E-value=4.3e-05 Score=72.14 Aligned_cols=128 Identities=12% Similarity=0.110 Sum_probs=83.7
Q ss_pred cccCcccCcHHHHHHHHHHccCCCCCCCCHH--HHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHhcCCcCEEEEE
Q psy11031 11 LLDFPSHRNPLKMFNLFVSEEVKDFSFLSSK--TVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKTINGVILI 88 (520)
Q Consensus 11 ~~~~~~h~s~G~~l~~~i~~G~~~g~lVPde--lv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L 88 (520)
-++++ |+++++.++.. + -+...+++ .....+...+.......+||+|||... ...++.+|+|
T Consensus 23 ~~~~~-~id~d~~~~~~---~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~vIidG~~~~----------l~~~~~vi~L 86 (180)
T PRK03839 23 KLGYE-YVDLTEFALKK---G--IGEEKDDEMEIDFDKLAYFIEEEFKEKNVVLDGHLSH----------LLPVDYVIVL 86 (180)
T ss_pred HhCCc-EEehhhhhhhc---C--CcccCChhhhcCHHHHHHHHHHhccCCCEEEEecccc----------ccCCCEEEEE
Confidence 35677 99999887642 2 12244443 334555555543223567999998652 2368999999
Q ss_pred EcCHHHHHHHhh-hCccCCccc-hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCC-CChHHHHHHHHHHHHHHh
Q psy11031 89 AWRQSLLERQID-YGAKLGHVI-LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGE-RNPVEVYADFRTAVLKIL 161 (520)
Q Consensus 89 ~~pd~~l~~Rl~-rg~~~~r~d-~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~-~~~eeV~~~i~~~l~~~~ 161 (520)
+|+.+++.+|+. |+. .|.+ .+.+..++.. .+++++|.+.+.++.||++ +++++|+.+|.+.+....
T Consensus 87 ~~~~~~~~~Rl~~R~~--~~~~~~~~~~~~~~~-----~~~~~~~~~r~~~~~Id~~~~s~eev~~~I~~~l~~~~ 155 (180)
T PRK03839 87 RAHPKIIKERLKERGY--SKKKILENVEAELVD-----VCLCEALEEKEKVIEVDTTGKTPEEVVEEILELIKSGK 155 (180)
T ss_pred ECCHHHHHHHHHHcCC--CHHHHHHHHHHHHHH-----HHHHHHHHhcCCEEEEECCCCCHHHHHHHHHHHHhcCC
Confidence 999999999994 431 1211 1111222211 2456788888889999997 799999999999987543
No 145
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.04 E-value=2.6e-06 Score=74.79 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=20.7
Q ss_pred EEEEcCCCCChhHHHHHHHhhC
Q psy11031 228 VWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 228 I~vlG~PGSGKsT~a~~La~k~ 249 (520)
|+|.|+|||||||+|+.|++++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999984
No 146
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=98.03 E-value=3.3e-05 Score=89.32 Aligned_cols=37 Identities=22% Similarity=0.422 Sum_probs=35.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR 262 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr 262 (520)
..+|.|-|||||||||+|++||+++ |+.++++|.++|
T Consensus 34 ~~~i~idG~~gsGKst~~~~la~~l-~~~~~~~g~~yR 70 (863)
T PRK12269 34 TVIIALDGPAGSGKSSVCRLLASRL-GAQCLNTGSFYR 70 (863)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh-CCcEEeHHHHHH
Confidence 3789999999999999999999998 999999999999
No 147
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.03 E-value=1.4e-05 Score=77.07 Aligned_cols=110 Identities=13% Similarity=0.245 Sum_probs=58.3
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhC--CCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCcc-------chHH
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY--PNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFV-------NRDV 292 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~--~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~v-------Pd~l 292 (520)
...|..+++.|+|||||||++..+.+.+ .++.+|+.+++-. .. +....+... ..... -..+
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~----~~----p~~~~~~~~--~~~~~~~~~~~~a~~~ 81 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQ----FH----PDYDELLKA--DPDEASELTQKEASRL 81 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGG----GS----TTHHHHHHH--HCCCTHHHHHHHHHHH
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHH----hc----cchhhhhhh--hhhhhHHHHHHHHHHH
Confidence 3678899999999999999999999985 5889999866543 22 111111110 00000 0124
Q ss_pred HHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCC---CCEEEecCChhh
Q psy11031 293 VLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIH---PPMILIDCSKLV 346 (520)
Q Consensus 293 v~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p---~~VI~Ld~~~~~ 346 (520)
...++...+. .+..+|+||--++...+..+.+.+... -.++++.|+++.
T Consensus 82 ~~~~~~~a~~-----~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~ 133 (199)
T PF06414_consen 82 AEKLIEYAIE-----NRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPEL 133 (199)
T ss_dssp HHHHHHHHHH-----CT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---HHH
T ss_pred HHHHHHHHHH-----cCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCHHH
Confidence 4445555555 567899999877767666343333322 236778887754
No 148
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.02 E-value=1.2e-05 Score=64.32 Aligned_cols=23 Identities=30% Similarity=0.635 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHHhhC
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
+|++.|+|||||||+|+.|++.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999874
No 149
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=97.96 E-value=0.00011 Score=75.34 Aligned_cols=39 Identities=13% Similarity=0.296 Sum_probs=32.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR 262 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr 262 (520)
..|.+|+|.|++||||||+|.+|++++ |+.++-..|.+|
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l-~~~~vi~~D~~r 128 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRL-GIRSVIGTDSIR 128 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh-CCCEEEechHHH
Confidence 467899999999999999999999998 998543356666
No 150
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.94 E-value=0.00019 Score=73.35 Aligned_cols=139 Identities=16% Similarity=0.159 Sum_probs=74.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcc
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKT 304 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~ 304 (520)
..+|+|.|++||||||+++.|.+ . |+..++- +|..++.+++.....
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l~~-~-g~~~~d~------------------------------~~~~L~~~l~~~~~~-- 51 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRALED-L-GYYCVDN------------------------------LPPSLLPKLVELLAQ-- 51 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHHHH-c-CCeEECC------------------------------cCHHHHHHHHHHHHh--
Confidence 46899999999999999999864 4 7655421 222333333332111
Q ss_pred c-cCCCcEEEEeCCCC-----CHHHHHHHHhhcCCCCCEEEecCChhhhhc-------cCCCCCHHHHHHHHHHHHHHhH
Q psy11031 305 K-YTEADGIVIDGFPR-----EMSQLIDFENKYQIHPPMILIDCSKLVLHK-------GQIDNSVSAFRRRLELFRERTL 371 (520)
Q Consensus 305 ~-~~~~~G~ILDGFPr-----t~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r-------~R~dD~~e~~~~Rl~~f~~~~~ 371 (520)
. ....--+++|---+ -.+....|.+. +....+|||+++.+.+.+ .|+--....+.+.+. +...
T Consensus 52 ~~~~~~~av~iD~r~~~~~~~~~~~~~~L~~~-g~~~~iI~L~a~~e~L~~Rl~~~rr~RPLl~~~~l~e~I~---~eR~ 127 (288)
T PRK05416 52 SGGIRKVAVVIDVRSRPFFDDLPEALDELRER-GIDVRVLFLDASDEVLIRRYSETRRRHPLSGDGSLLEGIE---LERE 127 (288)
T ss_pred cCCCCCeEEEEccCchhhHHHHHHHHHHHHHc-CCcEEEEEEECCHHHHHHHHhhcccCCCccCCccHHHHHH---HHHh
Confidence 1 12234577775322 12334444443 334468999999986421 222111111112222 2222
Q ss_pred HHHHHhhhCCCEEEEECC-CCHHHHHHHHHHHH
Q psy11031 372 PMLRAMDVETRLTIVDGD-TQLPQVREEFERVL 403 (520)
Q Consensus 372 ~l~~~y~~~~~l~~IDa~-~~~e~V~~~I~~~I 403 (520)
.+..+|+..+ ++||.+ .+++++.+.|...+
T Consensus 128 ~l~pl~~~AD--ivIDTs~ls~~el~e~I~~~l 158 (288)
T PRK05416 128 LLAPLRERAD--LVIDTSELSVHQLRERIRERF 158 (288)
T ss_pred hhhhHHHhCC--EEEECCCCCHHHHHHHHHHHH
Confidence 3333444333 467876 48999888887766
No 151
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=97.93 E-value=0.00017 Score=77.74 Aligned_cols=39 Identities=26% Similarity=0.293 Sum_probs=33.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR 262 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr 262 (520)
..|.+|+|.|+|||||||+|..|++++ |+.++-..|.+|
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~l-g~~~ii~tD~iR 291 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRL-GITRIVSTDAVR 291 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc-CCcEEeehhHHH
Confidence 458999999999999999999999997 998765556666
No 152
>KOG3220|consensus
Probab=97.88 E-value=0.00027 Score=67.83 Aligned_cols=158 Identities=18% Similarity=0.290 Sum_probs=97.1
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHH-------------
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVV------------- 293 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv------------- 293 (520)
++-+.|+-||||||+++.+. ++ |++.|+.+.+-| +..+.|++....|.+.+...-+.++-.+
T Consensus 3 iVGLTGgiatGKStVs~~f~-~~-G~~vIDaD~vaR---~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~ 77 (225)
T KOG3220|consen 3 IVGLTGGIATGKSTVSQVFK-AL-GIPVIDADVVAR---EVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDP 77 (225)
T ss_pred EEEeecccccChHHHHHHHH-Hc-CCcEecHHHHHH---HHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCH
Confidence 57789999999999999876 66 999999999999 8889999999988887765544443111
Q ss_pred ---------------HHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHh-hcCCCCCEEEecCChhh-hhc--cCCCC
Q psy11031 294 ---------------LDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFEN-KYQIHPPMILIDCSKLV-LHK--GQIDN 354 (520)
Q Consensus 294 ---------------~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~-~~~~p~~VI~Ld~~~~~-~~r--~R~dD 354 (520)
.+++++-+. ....+..||+=.-|- .||. .......++..-|+.+. +.| .|..-
T Consensus 78 ~~r~~Ln~IthP~Ir~em~ke~~~--~~l~G~r~ivlDiPL------LFE~~~~~~~~~tvvV~cd~~~Ql~Rl~~Rd~l 149 (225)
T KOG3220|consen 78 KKRQALNKITHPAIRKEMFKEILK--LLLRGYRVIVLDIPL------LFEAKLLKICHKTVVVTCDEELQLERLVERDEL 149 (225)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHH--HHhcCCeEEEEechH------HHHHhHHhheeeEEEEEECcHHHHHHHHHhccc
Confidence 111111111 111223333322222 2332 11123345666676653 222 45556
Q ss_pred CHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHH
Q psy11031 355 SVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVL 403 (520)
Q Consensus 355 ~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I 403 (520)
+++.-+.|+..- .|+.+--+.. -++||.+.++++..++++..+
T Consensus 150 se~dAe~Rl~sQ----mp~~~k~~~a--~~Vi~Nng~~~~l~~qv~~v~ 192 (225)
T KOG3220|consen 150 SEEDAENRLQSQ----MPLEKKCELA--DVVIDNNGSLEDLYEQVEKVL 192 (225)
T ss_pred cHHHHHHHHHhc----CCHHHHHHhh--heeecCCCChHHHHHHHHHHH
Confidence 777777777632 3444433332 256899999999988887664
No 153
>PHA03132 thymidine kinase; Provisional
Probab=97.87 E-value=0.0001 Score=81.52 Aligned_cols=120 Identities=9% Similarity=0.059 Sum_probs=65.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcC---CccchHHHH------
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAG---DFVNRDVVL------ 294 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G---~~vPd~lv~------ 294 (520)
+..+|+|.|..||||||+++.|++.+ |...+-+.+=...+.. -.+..+..+.+.+.++ +..+...+.
T Consensus 256 ~~~fIv~EGidGsGKTTlik~L~e~l-g~~Vi~t~EP~~~W~~---vy~n~l~~I~~~~~r~~~g~~s~~~ella~Ql~F 331 (580)
T PHA03132 256 PACFLFLEGVMGVGKTTLLNHMRGIL-GDNVLVFPEPMRYWTE---VYSNCLKEIYKLVKPGKHGKTSTSAKLLACQMKF 331 (580)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHh-CCceEEEeCCCCchhh---ccccHHHHHHHHHhcccccCCCHHHHHHHHHHHH
Confidence 36899999999999999999999986 6554433111100000 0124567777766543 222222221
Q ss_pred ----HHHHHHHhc------c---ccCCCcEEEEeCCCC-CHH-H---------------HHHHHhhc-CCCCCEEEecCC
Q psy11031 295 ----DIVYAEMKK------T---KYTEADGIVIDGFPR-EMS-Q---------------LIDFENKY-QIHPPMILIDCS 343 (520)
Q Consensus 295 ----~ll~~~l~~------~---~~~~~~G~ILDGFPr-t~~-Q---------------ae~l~~~~-~~p~~VI~Ld~~ 343 (520)
.++..++.. . ....++.+|+|+|+- +.. + ...+.... ..|+.+|+|+++
T Consensus 332 A~Pfl~~adR~~~~~~~~~~i~p~l~~g~iVI~DRyi~Ss~avF~~~~y~~G~ls~~e~~~lL~~~~~~~PDLiIyLdv~ 411 (580)
T PHA03132 332 ATPFRALATRTRRLVQPESVRRPVAPLDNWVLFDRHLLSATVVFPLMHLRNGMLSFSHFIQLLSTFRAHEGDVIVLLKLN 411 (580)
T ss_pred hhHHHHHHHHHHHHHhhhhhccccccCCCEEEEecCccccHHHHHHhccccccCCHHHHHHHHHHhcccCCCEEEEEeCC
Confidence 111122110 0 113356789999873 322 1 12222222 246789999999
Q ss_pred hhhh
Q psy11031 344 KLVL 347 (520)
Q Consensus 344 ~~~~ 347 (520)
.+..
T Consensus 412 pe~a 415 (580)
T PHA03132 412 SEEN 415 (580)
T ss_pred HHHH
Confidence 8753
No 154
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=97.83 E-value=7.6e-05 Score=71.60 Aligned_cols=36 Identities=19% Similarity=0.317 Sum_probs=32.8
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR 262 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr 262 (520)
+|.|.|++||||||+|+.|++.+.++.+|+++++..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~ 36 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFK 36 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccC
Confidence 478999999999999999999975799999999887
No 155
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=97.83 E-value=0.0001 Score=81.08 Aligned_cols=93 Identities=17% Similarity=0.254 Sum_probs=66.3
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHH
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEM 301 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l 301 (520)
...|..|+++|+|||||||+|+.+++.. |+.+++.+.+ . . -+.+...+...|
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~-g~~~vn~D~l-g---~-----------------------~~~~~~~a~~~L 417 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPA-GYKHVNADTL-G---S-----------------------TQNCLTACERAL 417 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHc-CCeEECcHHH-H---H-----------------------HHHHHHHHHHHH
Confidence 4568899999999999999999999987 9999999654 3 1 011233444555
Q ss_pred hccccCCCcEEEEeCCCCCH---HHHHHHHhhcCCCCCEEEecCChhhh
Q psy11031 302 KKTKYTEADGIVIDGFPREM---SQLIDFENKYQIHPPMILIDCSKLVL 347 (520)
Q Consensus 302 ~~~~~~~~~G~ILDGFPrt~---~Qae~l~~~~~~p~~VI~Ld~~~~~~ 347 (520)
. .++.+|||.--.+. .....+.+..+.+-.++++++|.+.+
T Consensus 418 ~-----~G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~ 461 (526)
T TIGR01663 418 D-----QGKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQA 461 (526)
T ss_pred h-----CCCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHH
Confidence 5 56789999855554 44444445555555689999998764
No 156
>PRK06696 uridine kinase; Validated
Probab=97.79 E-value=7.6e-05 Score=73.28 Aligned_cols=41 Identities=17% Similarity=0.249 Sum_probs=33.0
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCC--CC--eeeehhhHHh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYP--NW--TQISLGKLLR 262 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~--g~--~~is~gdLlr 262 (520)
...|.+|.|.|++||||||+|+.|++.+. |. .++++++++.
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN 63 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence 34688999999999999999999999752 33 4566888776
No 157
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=97.78 E-value=0.001 Score=62.20 Aligned_cols=163 Identities=18% Similarity=0.248 Sum_probs=86.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcc
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKT 304 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~ 304 (520)
++++++.|-||+||||+++...+...++..+..|+++-+.+ .....-+..+.++ -+|.+...++...+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A-~k~glve~rD~~R-------klp~e~Q~~lq~~Aa~-- 73 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIA-KKKGLVEHRDEMR-------KLPLENQRELQAEAAK-- 73 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHH-HHhCCcccHHHHh-------cCCHHHHHHHHHHHHH--
Confidence 58899999999999999998877643677789999987211 1112222222332 3455544444433332
Q ss_pred ccCC-CcEEEEe---------CC-CCCHHHHHHHHhhcCCCCCEEEecCChhhh-h-------ccCCCCCHHHHHHHHHH
Q psy11031 305 KYTE-ADGIVID---------GF-PREMSQLIDFENKYQIHPPMILIDCSKLVL-H-------KGQIDNSVSAFRRRLEL 365 (520)
Q Consensus 305 ~~~~-~~G~ILD---------GF-Prt~~Qae~l~~~~~~p~~VI~Ld~~~~~~-~-------r~R~dD~~e~~~~Rl~~ 365 (520)
.... ..-+|+| || |--..|. |+. ..|+.+++|+.+++.. . |.|..++.+.++.-.+.
T Consensus 74 rI~~~~~~iivDtH~~IkTP~GylpgLP~~V--l~~--l~pd~ivllEaDp~~Il~RR~~D~~r~Rd~es~e~i~eHqe~ 149 (189)
T COG2019 74 RIAEMALEIIVDTHATIKTPAGYLPGLPSWV--LEE--LNPDVIVLLEADPEEILERRLRDSRRDRDVESVEEIREHQEM 149 (189)
T ss_pred HHHHhhhceEEeccceecCCCccCCCCcHHH--HHh--cCCCEEEEEeCCHHHHHHHHhcccccccccccHHHHHHHHHH
Confidence 1111 1127887 43 4444444 222 2367788888877643 2 23344455555443322
Q ss_pred HHHHhHHHHHHhhhCC-CEEEE-ECCCCHHHHHHHHHHHHH
Q psy11031 366 FRERTLPMLRAMDVET-RLTIV-DGDTQLPQVREEFERVLK 404 (520)
Q Consensus 366 f~~~~~~l~~~y~~~~-~l~~I-Da~~~~e~V~~~I~~~I~ 404 (520)
-+-.+. .|--..+ .+..| |-+.++++-..+|...|.
T Consensus 150 nR~aA~---a~A~~~gatVkIV~n~~~~~e~Aa~eiv~~l~ 187 (189)
T COG2019 150 NRAAAM---AYAILLGATVKIVENHEGDPEEAAEEIVELLD 187 (189)
T ss_pred HHHHHH---HHHHHhCCeEEEEeCCCCCHHHHHHHHHHHHh
Confidence 111111 1111112 23333 455678887777777665
No 158
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.78 E-value=0.00018 Score=66.24 Aligned_cols=106 Identities=15% Similarity=0.099 Sum_probs=54.3
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCC--CC--eeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHh
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYP--NW--TQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMK 302 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~--g~--~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~ 302 (520)
+|+|.|.|||||||+|+.|++.+. |+ .+++ ++-++ +....... +.... ..+.+..+.. ...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~-~d~~r---~~l~~~~~--------~~~~~--~~~~~~~~~~-~a~ 65 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLD-GDNVR---HGLNKDLG--------FSRED--REENIRRIAE-VAK 65 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc-CHHHH---HhhhhccC--------CCcch--HHHHHHHHHH-HHH
Confidence 488999999999999999998741 43 3343 35555 22211100 00000 0111212111 111
Q ss_pred ccccCCCcEEEEeCCCCCHHHHHHHHhhcC-CCCCEEEecCChhhhh
Q psy11031 303 KTKYTEADGIVIDGFPREMSQLIDFENKYQ-IHPPMILIDCSKLVLH 348 (520)
Q Consensus 303 ~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~-~p~~VI~Ld~~~~~~~ 348 (520)
. ....+..+|+|.--....+...+.+... .+..+++++||.+.+.
T Consensus 66 ~-l~~~G~~VIid~~~~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~ 111 (149)
T cd02027 66 L-LADAGLIVIAAFISPYREDREAARKIIGGGDFLEVFVDTPLEVCE 111 (149)
T ss_pred H-HHhCCCEEEEccCCCCHHHHHHHHHhcCCCCEEEEEEeCCHHHHH
Confidence 0 1123567888874334444444444332 2334799999987643
No 159
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.78 E-value=0.00028 Score=67.63 Aligned_cols=36 Identities=19% Similarity=0.450 Sum_probs=30.0
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCC--CCeeeehhhHHh
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYP--NWTQISLGKLLR 262 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~--g~~~is~gdLlr 262 (520)
+|.|.|++||||||+|+.|++.+. +..+++++++..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~ 38 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYK 38 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccccc
Confidence 478999999999999999998751 367888887765
No 160
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=97.78 E-value=6.1e-05 Score=71.42 Aligned_cols=160 Identities=12% Similarity=0.137 Sum_probs=79.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCC-CCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccc--hH---HHHHHHHH
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYP-NWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVN--RD---VVLDIVYA 299 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~-g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vP--d~---lv~~ll~~ 299 (520)
.+|+|.|++-|||||+|+.|.+.+. .|.|++++.+.. .........+. -+.-+.-.| .. .+...+..
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~---~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~ 74 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVD---MMPPGRYRPGD----GLEPAGDRPDGGPLFRRLYAAMHA 74 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHH---HS-GGGGTSTT----SEEEETTSEEE-HHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHh---hcCcccccCCc----cccccccCCchhHHHHHHHHHHHH
Confidence 5799999999999999999999874 457899988877 32211100000 000000000 11 22233333
Q ss_pred HHhccccCCCcEEEEeCCCCCHHH-HHHHHhhcCCCC-CEEEecCChhhhhc---cCCCCCHHHHHHHHHHHHHHhHHHH
Q psy11031 300 EMKKTKYTEADGIVIDGFPREMSQ-LIDFENKYQIHP-PMILIDCSKLVLHK---GQIDNSVSAFRRRLELFRERTLPML 374 (520)
Q Consensus 300 ~l~~~~~~~~~G~ILDGFPrt~~Q-ae~l~~~~~~p~-~VI~Ld~~~~~~~r---~R~dD~~e~~~~Rl~~f~~~~~~l~ 374 (520)
.+. +....+..+|+|+...+..+ .+.+.+.+..-+ .+|-+.||.+.+.+ .|.|-... +. +. .|. ..-.-
T Consensus 75 ~ia-a~a~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~RgDR~~G-~a-~~-q~~-~Vh~~- 148 (174)
T PF07931_consen 75 AIA-AMARAGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARGDRPIG-LA-AW-QAE-HVHEG- 148 (174)
T ss_dssp HHH-HHHHTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHTSSSTT-HH-HH-HTT-GGGTT-
T ss_pred HHH-HHHhCCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcCCcchH-HH-HH-HHh-hcccC-
Confidence 333 13446789999998777676 445545554333 46778999986532 33332111 11 11 111 00000
Q ss_pred HHhhhCCCEEEEECC-CCHHHHHHHHHHHH
Q psy11031 375 RAMDVETRLTIVDGD-TQLPQVREEFERVL 403 (520)
Q Consensus 375 ~~y~~~~~l~~IDa~-~~~e~V~~~I~~~I 403 (520)
..|+ +.||.+ .++++..+.|.+.+
T Consensus 149 ~~YD-----leVDTs~~sp~ecA~~I~~~~ 173 (174)
T PF07931_consen 149 GRYD-----LEVDTSATSPEECAREILARL 173 (174)
T ss_dssp ---S-----EEEETTSS-HHHHHHHHHTT-
T ss_pred CCCC-----EEEECCCCCHHHHHHHHHHHh
Confidence 1132 568987 58888888887654
No 161
>KOG3354|consensus
Probab=97.77 E-value=0.00038 Score=64.23 Aligned_cols=158 Identities=15% Similarity=0.151 Sum_probs=87.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchH----HHHHHHH
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRD----VVLDIVY 298 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~----lv~~ll~ 298 (520)
+.+-.|+|+|..||||||+++.|++++ |+..+.-+|+=- .+ =.+-|..|-.+.|+ ++.++-.
T Consensus 10 ~~k~~i~vmGvsGsGKSTigk~L~~~l-~~~F~dgDd~Hp---~~----------NveKM~~GipLnD~DR~pWL~~i~~ 75 (191)
T KOG3354|consen 10 PFKYVIVVMGVSGSGKSTIGKALSEEL-GLKFIDGDDLHP---PA----------NVEKMTQGIPLNDDDRWPWLKKIAV 75 (191)
T ss_pred CCceeEEEEecCCCChhhHHHHHHHHh-CCcccccccCCC---HH----------HHHHHhcCCCCCcccccHHHHHHHH
Confidence 445689999999999999999999997 999998877744 11 12335556665553 2222221
Q ss_pred HHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcC------CC---CCEEEecCChhhhh-c--cCCCC--CHHHHHHHHH
Q psy11031 299 AEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQ------IH---PPMILIDCSKLVLH-K--GQIDN--SVSAFRRRLE 364 (520)
Q Consensus 299 ~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~------~p---~~VI~Ld~~~~~~~-r--~R~dD--~~e~~~~Rl~ 364 (520)
.... .....+|+||----.-..-...|...+. .+ -.+|+|..+.+++. | .|... -.+-++..++
T Consensus 76 ~~~~--~l~~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gHFMp~~lleSQf~ 153 (191)
T KOG3354|consen 76 ELRK--ALASGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKGHFMPADLLESQFA 153 (191)
T ss_pred HHHH--HhhcCCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhcccccCCHHHHHHHHH
Confidence 1112 2335778888643222222233333222 12 13788887776532 1 23221 1222221111
Q ss_pred HHHHHhHHHHHHh-hhCCCEEEEECC-CCHHHHHHHHHHHHH
Q psy11031 365 LFRERTLPMLRAM-DVETRLTIVDGD-TQLPQVREEFERVLK 404 (520)
Q Consensus 365 ~f~~~~~~l~~~y-~~~~~l~~IDa~-~~~e~V~~~I~~~I~ 404 (520)
.++.= .+...+++|+.+ .+++++...|...+.
T Consensus 154 --------~LE~p~~~e~div~isv~~~~~e~iv~tI~k~~~ 187 (191)
T KOG3354|consen 154 --------TLEAPDADEEDIVTISVKTYSVEEIVDTIVKMVA 187 (191)
T ss_pred --------hccCCCCCccceEEEeeccCCHHHHHHHHHHHHH
Confidence 11111 112358899988 888887777665544
No 162
>KOG3877|consensus
Probab=97.75 E-value=0.00063 Score=68.09 Aligned_cols=171 Identities=14% Similarity=0.218 Sum_probs=89.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeee---hhhHHhhhhcccc----------cCCcchHHHHhhhh--cCCc
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQIS---LGKLLRYFANIED----------DGEGLNSRIKSSVS--AGDF 287 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is---~gdLlr~~~~~~~----------~~t~~g~~i~~~l~--~G~~ 287 (520)
...++|+|.|+-|||||++|+.||+++ |+.|+- +++++- ..-. ..+...-.++.+.. +|+
T Consensus 69 enSkvI~VeGnI~sGK~klAKelAe~L-gf~hfP~~~~d~iyv---dsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~d- 143 (393)
T KOG3877|consen 69 ENSKVIVVEGNIGSGKTKLAKELAEQL-GFVHFPEFRMDDIYV---DSYGNDLRNLYNKFPARCRLPDISMFYKDPSGD- 143 (393)
T ss_pred ccceEEEEeCCcccCchhHHHHHHHHh-CCcccccccccceee---cccCccchhccccCCcccCchhHHHhccCCCcc-
Confidence 346899999999999999999999997 999874 444432 1110 00111112222222 122
Q ss_pred cchHHHHHHHH-------HHHhccccCCCcEEEEeCCCCC-HHHHHHHHhh---------------------cCCCCCEE
Q psy11031 288 VNRDVVLDIVY-------AEMKKTKYTEADGIVIDGFPRE-MSQLIDFENK---------------------YQIHPPMI 338 (520)
Q Consensus 288 vPd~lv~~ll~-------~~l~~~~~~~~~G~ILDGFPrt-~~Qae~l~~~---------------------~~~p~~VI 338 (520)
....+...+.. ++|+ +-+..++|+||+.-|-+ .-.++++... +..|-.||
T Consensus 144 lsa~~Q~r~y~~R~~QY~dAL~-HiL~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLVi 222 (393)
T KOG3877|consen 144 LSAAMQDRIYNCRFDQYLDALA-HILNTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVI 222 (393)
T ss_pred HHHHHHHHHHHhHHHHHHHHHH-HHHhcCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEE
Confidence 11122222211 1222 12346899999998843 4445544432 12345699
Q ss_pred EecCChhhhh---ccCC-CCCH-----HHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECC--CCHHHHHHHHHHH
Q psy11031 339 LIDCSKLVLH---KGQI-DNSV-----SAFRRRLELFRERTLPMLRAMDVETRLTIVDGD--TQLPQVREEFERV 402 (520)
Q Consensus 339 ~Ld~~~~~~~---r~R~-dD~~-----e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~--~~~e~V~~~I~~~ 402 (520)
+||.|-.... ++|. ++.. ..++.--+.|+++ .+.-|+....++.-|.. ++.+.|.++|+.+
T Consensus 223 Yld~Pv~~v~~~Ik~rg~~~Eik~~s~aYL~diE~~YK~~---fL~e~s~h~eiL~Ydwt~~gdt~~VVEDIErl 294 (393)
T KOG3877|consen 223 YLDTPVNKVLENIKRRGNTDEIKTVSEAYLKDIEESYKDS---FLREYSNHSEILAYDWTKPGDTDAVVEDIERL 294 (393)
T ss_pred EEcCCcHHHHHHHHhcCCCcceeehhHHHHHHHHHHHHHH---HHHHHhhhhheeeeecccCCCchhHHHhhhhh
Confidence 9999875322 1222 2211 1222222233322 23445544455666755 5677788888765
No 163
>COG4639 Predicted kinase [General function prediction only]
Probab=97.74 E-value=0.00012 Score=67.59 Aligned_cols=106 Identities=22% Similarity=0.316 Sum_probs=68.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcc
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKT 304 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~ 304 (520)
+..++++|+|||||||.|+.. ++....+|++++-+ .. |....+....| .+..+.+++...+++
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n---~~~~~~lsld~~r~---~l-------g~~~~~e~sqk---~~~~~~~~l~~~l~q- 64 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKEN---FLQNYVLSLDDLRL---LL-------GVSASKENSQK---NDELVWDILYKQLEQ- 64 (168)
T ss_pred ceEEEEecCCCCchhHHHHHh---CCCcceecHHHHHH---Hh-------hhchhhhhccc---cHHHHHHHHHHHHHH-
Confidence 356899999999999999864 34678899877765 11 11111111111 234444455444442
Q ss_pred ccCCCcEEEEeCCC---CCHHHHHHHHhhcCCCCCEEEecCChhhh
Q psy11031 305 KYTEADGIVIDGFP---REMSQLIDFENKYQIHPPMILIDCSKLVL 347 (520)
Q Consensus 305 ~~~~~~G~ILDGFP---rt~~Qae~l~~~~~~p~~VI~Ld~~~~~~ 347 (520)
....++..|+|.+= +++.+...|....+-...+|++|.|.+.+
T Consensus 65 rl~~Gk~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c 110 (168)
T COG4639 65 RLRRGKFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELC 110 (168)
T ss_pred HHHcCCeEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHH
Confidence 23357889999985 66666667777776666689999998764
No 164
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=97.73 E-value=0.00029 Score=68.28 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=26.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeee
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI 255 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i 255 (520)
.++|+|.|+=|+||||+|+.|++++ |..++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l-~~~~~ 33 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL-GFKVF 33 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh-CCcee
Confidence 4679999999999999999999998 76555
No 165
>COG0645 Predicted kinase [General function prediction only]
Probab=97.72 E-value=0.00017 Score=67.56 Aligned_cols=110 Identities=15% Similarity=0.105 Sum_probs=63.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccch---HHHHHHHHHHHh
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNR---DVVLDIVYAEMK 302 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd---~lv~~ll~~~l~ 302 (520)
..+++.|.|||||||+|+.|++.+ |..+|+.+.+-+ .+.. -+.. .-...|-+-|. .....++.....
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~l-gA~~lrsD~irk----~L~g-~p~~----~r~~~g~ys~~~~~~vy~~l~~~A~l 71 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELL-GAIRLRSDVIRK----RLFG-VPEE----TRGPAGLYSPAATAAVYDELLGRAEL 71 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhc-CceEEehHHHHH----HhcC-Cccc----ccCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 458899999999999999999997 999999966655 2211 0000 00112333332 222233322222
Q ss_pred ccccCCCcEEEEeCCCCC---HHHHHHHHhhcCCCCCEEEecCChhhh
Q psy11031 303 KTKYTEADGIVIDGFPRE---MSQLIDFENKYQIHPPMILIDCSKLVL 347 (520)
Q Consensus 303 ~~~~~~~~G~ILDGFPrt---~~Qae~l~~~~~~p~~VI~Ld~~~~~~ 347 (520)
....+..+|||+-.-. .+-+..+.+..+.+...|.++++.+++
T Consensus 72 --~l~~G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~ 117 (170)
T COG0645 72 --LLSSGHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVL 117 (170)
T ss_pred --HHhCCCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHH
Confidence 3446788999984333 333333333333334457777777764
No 166
>KOG3327|consensus
Probab=97.67 E-value=0.00045 Score=65.43 Aligned_cols=143 Identities=13% Similarity=0.196 Sum_probs=97.2
Q ss_pred ccccccccCc-ccCcHHHHHHHHHHccCCCCCCCCHHHH-----------HHHHHHHHhcCCCCCcEEEeCCCCCH---H
Q psy11031 6 LYATSLLDFP-SHRNPLKMFNLFVSEEVKDFSFLSSKTV-----------TEVLMLEMKMSPAAKAFLISGYPRNM---R 70 (520)
Q Consensus 6 ~~~~~~~~~~-~h~s~G~~l~~~i~~G~~~g~lVPdelv-----------~~ll~~~l~~~~~~~G~ILDGFPRt~---~ 70 (520)
+-++.++.|| --+++|+++..|+.+-. -+||+++ +.+|.+.+.+ ....|+|=|=-+= .
T Consensus 33 ~~~~~l~~FP~Rst~iGk~i~~YL~k~~----dl~d~~iHLlFSAnRwe~~~~i~e~l~k---g~~~ivDRY~~SGvAyS 105 (208)
T KOG3327|consen 33 LDPAELLRFPERSTSIGKLIDGYLRKKS----DLPDHTIHLLFSANRWEHVSLIKEKLAK---GTTLIVDRYSFSGVAYS 105 (208)
T ss_pred cChHHhhhcchhcccccHHHHHHHHhcc----CCcHHHHHHHhccchhhHHHHHHHHHhc---CCeEEEecceecchhhh
Confidence 3456788888 45678999999999998 8999875 3455565543 3346777665321 1
Q ss_pred hHHHH--------HHhcCCcCEEEEEEcCHHHHHHHhhhCccCCccchHHHHHHHHHHHhccchHHHHhhhC-CcEEEEe
Q psy11031 71 DVVEY--------SDKIKTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMELANFYQNVTPVTDFFDQR-GMLIAVN 141 (520)
Q Consensus 71 QA~~~--------~~~~~~pd~VI~L~~pd~~l~~Rl~rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~-~~l~~Id 141 (520)
-|+.+ ..-..+||+|++|+++.+.+.+|-+.|.. |.+..++.+|...|.+... ++. -.++.||
T Consensus 106 ~AKgl~~dWc~~pd~gL~KPDlvlfL~v~p~~~a~rggfG~E--rye~v~fqekv~~~~q~l~------r~e~~~~~~vD 177 (208)
T KOG3327|consen 106 AAKGLDLDWCKQPDVGLPKPDLVLFLDVSPEDAARRGGFGEE--RYETVAFQEKVLVFFQKLL------RKEDLNWHVVD 177 (208)
T ss_pred hhcCCCcchhhCCccCCCCCCeEEEEeCCHHHHHHhcCcchh--HHHHHHHHHHHHHHHHHHH------hccCCCeEEEe
Confidence 11111 11224899999999999998887666543 3344455666555554433 322 2489999
Q ss_pred CCCChHHHHHHHHHHHHHHhcc
Q psy11031 142 GERNPVEVYADFRTAVLKILNK 163 (520)
Q Consensus 142 a~~~~eeV~~~i~~~l~~~~~~ 163 (520)
|.++.++|.++|..+++..+..
T Consensus 178 As~sve~V~~~V~~i~e~~~~~ 199 (208)
T KOG3327|consen 178 ASKSVEKVHQQVRSLVENVLSE 199 (208)
T ss_pred cCccHHHHHHHHHHHHHHhccC
Confidence 9999999999999999987733
No 167
>PRK07667 uridine kinase; Provisional
Probab=97.67 E-value=0.00012 Score=70.45 Aligned_cols=38 Identities=8% Similarity=0.173 Sum_probs=31.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhC----CCCeeeehhhHHh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDY----PNWTQISLGKLLR 262 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~----~g~~~is~gdLlr 262 (520)
..+|.|.|+|||||||+|+.|++.+ .+...+++++.+.
T Consensus 17 ~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~ 58 (193)
T PRK07667 17 RFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIV 58 (193)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccc
Confidence 4789999999999999999999864 1355889988776
No 168
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.66 E-value=0.00016 Score=77.20 Aligned_cols=96 Identities=20% Similarity=0.258 Sum_probs=59.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCC---C-CeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCc--cchHHHHHHH
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYP---N-WTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDF--VNRDVVLDIV 297 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~---g-~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~--vPd~lv~~ll 297 (520)
.+.+|+|+||+||||||+|.+|+..+. | -+++...|..| ... ...++.+.+.... .+...+. .+
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R---~aA------~eQLk~yAe~lgvp~~~~~~~~-~l 291 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYR---IAA------IEQLKRYADTMGMPFYPVKDIK-KF 291 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchh---hhH------HHHHHHHHHhcCCCeeehHHHH-HH
Confidence 457899999999999999999997541 2 25566667777 211 1234443333211 1111122 23
Q ss_pred HHHHhccccCCCcEEEEe--CCC-CCHHHHHHHHhhcC
Q psy11031 298 YAEMKKTKYTEADGIVID--GFP-REMSQLIDFENKYQ 332 (520)
Q Consensus 298 ~~~l~~~~~~~~~G~ILD--GFP-rt~~Qae~l~~~~~ 332 (520)
...+. . .....+||| |++ ++..|++.|.+.+.
T Consensus 292 ~~~l~--~-~~~D~VLIDTaGr~~rd~~~l~eL~~~~~ 326 (432)
T PRK12724 292 KETLA--R-DGSELILIDTAGYSHRNLEQLERMQSFYS 326 (432)
T ss_pred HHHHH--h-CCCCEEEEeCCCCCccCHHHHHHHHHHHH
Confidence 33444 1 234679999 985 89999999887653
No 169
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.63 E-value=0.00018 Score=66.93 Aligned_cols=38 Identities=21% Similarity=0.356 Sum_probs=27.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCC--CC--eeeehhhHHh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYP--NW--TQISLGKLLR 262 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~--g~--~~is~gdLlr 262 (520)
+|.+|||.|.|||||||+|+.|.+++. |. .+++. |-+|
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDg-D~lR 42 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDG-DNLR 42 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEH-HHHC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecC-cchh
Confidence 367899999999999999999988641 33 33443 6666
No 170
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=97.62 E-value=0.00016 Score=71.14 Aligned_cols=155 Identities=15% Similarity=0.305 Sum_probs=82.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCC-----eeeehhhHHhhhhccccc---------CCcchHHHHhhhhcCCcc
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNW-----TQISLGKLLRYFANIEDD---------GEGLNSRIKSSVSAGDFV 288 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~-----~~is~gdLlr~~~~~~~~---------~t~~g~~i~~~l~~G~~v 288 (520)
....+|+++|.|+.|||++|++|++.+ .| ..+++|+.=|+ .... .++.+..+++
T Consensus 10 ~~kl~ivmVGLPArGKs~ia~kl~ryL-~w~g~~~~vFn~g~yRR~---~~~~~~~~~ff~p~n~~~~~~R~-------- 77 (222)
T PF01591_consen 10 AGKLVIVMVGLPARGKSYIARKLCRYL-NWLGVKTKVFNVGDYRRK---LSGAPQDAEFFDPDNEEAKKLRE-------- 77 (222)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHH-HHTT--EEEEEHHHHHHH---HHSS-S-GGGGSTT-HHHHHHHH--------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH-hhcCCCcceeecccceec---ccccccccccCCCCChHHHHHHH--------
Confidence 346789999999999999999999743 33 66789988883 2221 1122222222
Q ss_pred chHHHHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCC-CEEEecC--Chh-hhh------ccC-CC----
Q psy11031 289 NRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHP-PMILIDC--SKL-VLH------KGQ-ID---- 353 (520)
Q Consensus 289 Pd~lv~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~-~VI~Ld~--~~~-~~~------r~R-~d---- 353 (520)
++....|.+-+.-.....+.--|+|+-=.|.+.-+.+.+.+.... .|+||++ ++. ++. ... +|
T Consensus 78 --~~a~~~l~dl~~~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~ii~~NI~~~~~~spDY~~~ 155 (222)
T PF01591_consen 78 --QIAKEALEDLIEWLQEEGGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEIIERNIREKKQNSPDYKGM 155 (222)
T ss_dssp --HHHHHHHHHHHHHHHTS--SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHHHTTSGGGTTS
T ss_pred --HHHHHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHHHHHHHHHHHcCCcccccC
Confidence 223233332222101234566899999999888887777665444 4888885 443 221 111 22
Q ss_pred ---CCHHHHHHHHHHHHHHhHHHHHHhhhC-CCEEEEECCCC
Q psy11031 354 ---NSVSAFRRRLELFRERTLPMLRAMDVE-TRLTIVDGDTQ 391 (520)
Q Consensus 354 ---D~~e~~~~Rl~~f~~~~~~l~~~y~~~-~~l~~IDa~~~ 391 (520)
...+.|.+|++.|.+...|+-+-.+.. ..+..||+...
T Consensus 156 ~~e~A~~Df~~RI~~Ye~~YEpl~~e~d~~lsyIKiin~g~~ 197 (222)
T PF01591_consen 156 DPEEAIEDFKKRIEHYEKVYEPLDEEEDEDLSYIKIINVGEK 197 (222)
T ss_dssp -HHHHHHHHHHHHHHHHTT-----TTTTTTSEEEEEETTTTE
T ss_pred CHHHHHHHHHHHHHhhcccccccccccccCceEEEEEcCCce
Confidence 124457889999999998886222221 23455665443
No 171
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.61 E-value=5.1e-05 Score=71.69 Aligned_cols=35 Identities=20% Similarity=0.329 Sum_probs=30.3
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCC--CeeeehhhHHh
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPN--WTQISLGKLLR 262 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g--~~~is~gdLlr 262 (520)
+|+|+|+|||||||+|..++..+ + +.+++++....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~-~~~~~~iat~~~~~ 39 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS-GLQVLYIATAQPFD 39 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc-CCCcEeCcCCCCCh
Confidence 69999999999999999999986 5 67888876665
No 172
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=97.61 E-value=0.00012 Score=76.48 Aligned_cols=34 Identities=15% Similarity=0.279 Sum_probs=28.9
Q ss_pred EEEEcCCCCChhHHHHHHHhhCCC------CeeeehhhHHh
Q psy11031 228 VWVVGGPGSSKSEMCQKVLQDYPN------WTQISLGKLLR 262 (520)
Q Consensus 228 I~vlG~PGSGKsT~a~~La~k~~g------~~~is~gdLlr 262 (520)
++++|+|||||||+++.|++.+ . +.+++.+|++.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l-~~~~g~~v~~~~~Dd~i~ 41 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL-RRERGWAVAVITYDDIIP 41 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH-HhccCCeEEEEccccccc
Confidence 6899999999999999998764 3 45899999984
No 173
>PTZ00301 uridine kinase; Provisional
Probab=97.57 E-value=0.0011 Score=64.91 Aligned_cols=38 Identities=21% Similarity=0.268 Sum_probs=29.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCC---C---CeeeehhhHHh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYP---N---WTQISLGKLLR 262 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~---g---~~~is~gdLlr 262 (520)
..+|.|.|+|||||||+|+.|++++. | ...++.++..+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~ 46 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYR 46 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCcc
Confidence 47899999999999999998876530 2 23667777665
No 174
>PRK08233 hypothetical protein; Provisional
Probab=97.55 E-value=0.0006 Score=63.85 Aligned_cols=125 Identities=13% Similarity=0.117 Sum_probs=81.2
Q ss_pred HHHHHHccCCCCCCCCHHHHHHHHHHHHhcC--CCCCcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHh-h
Q psy11031 24 FNLFVSEEVKDFSFLSSKTVTEVLMLEMKMS--PAAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQI-D 100 (520)
Q Consensus 24 l~~~i~~G~~~g~lVPdelv~~ll~~~l~~~--~~~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl-~ 100 (520)
+..++..|. .+ +.+..+.+.+.+... .....|||.+||+..... .+. ..+|.+|+|++|.+++.+|+ .
T Consensus 47 ~~~~~~~~~----~~-~~~~~~~~~~~l~~~~~~~~~~~vivd~~~~~~~~-~~~---~~~d~~i~l~~~~~~~~~R~~~ 117 (182)
T PRK08233 47 ICKWIDKGA----NY-SEWVLTPLIKDIQELIAKSNVDYIIVDYPFAYLNS-EMR---QFIDVTIFIDTPLDIAMARRIL 117 (182)
T ss_pred hhhhhhccC----Ch-hhhhhHHHHHHHHHHHcCCCceEEEEeeehhhccH-HHH---HHcCEEEEEcCCHHHHHHHHHH
Confidence 445555554 44 555555666666432 223478887788865554 222 24799999999999977765 4
Q ss_pred hCccCCccchHHHHHHHHHHHhccchHHHHhhh---CCcEEEEeCCCChHHHHHHHHHHHHH
Q psy11031 101 YGAKLGHVILSLARMELANFYQNVTPVTDFFDQ---RGMLIAVNGERNPVEVYADFRTAVLK 159 (520)
Q Consensus 101 rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~---~~~l~~Ida~~~~eeV~~~i~~~l~~ 159 (520)
|... +.+.+.+.+++..|...+.|...-+.+ ....+.||++.++++++++|.+.+..
T Consensus 118 R~~~--~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~vId~~~~~e~i~~~i~~~l~~ 177 (182)
T PRK08233 118 RDFK--EDTGNEIHNDLKHYLNYARPLYLEALHTVKPNADIVLDGALSVEEIINQIEEELYR 177 (182)
T ss_pred HHhh--hccccchhhHHHHHHHHHHHHHHHHhhcCccCCeEEEcCCCCHHHHHHHHHHHHHh
Confidence 5321 112334677899999888876322111 23457799999999999999998864
No 175
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.54 E-value=0.00039 Score=70.93 Aligned_cols=91 Identities=11% Similarity=0.035 Sum_probs=70.5
Q ss_pred CCCcEEEeCCCCCHHhHHHHHHhc--CCcC-EEEEEEcCHHHHHHHh-hhCccCCcc-chHHHH---HHHHHHHhccchH
Q psy11031 56 AAKAFLISGYPRNMRDVVEYSDKI--KTIN-GVILIAWRQSLLERQI-DYGAKLGHV-ILSLAR---MELANFYQNVTPV 127 (520)
Q Consensus 56 ~~~G~ILDGFPRt~~QA~~~~~~~--~~pd-~VI~L~~pd~~l~~Rl-~rg~~~~r~-d~e~i~---~Rl~~Y~~~t~pv 127 (520)
...++|||+++++..|...|.+.. .... .+|+|++|.+++.+|+ .|+ +|. ..+.+. +|++.|...|.|+
T Consensus 74 ~g~~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~---~~~~~~~~i~~~~~~~~~~~~~~~p~ 150 (300)
T PHA02530 74 SGKSVIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRG---ERAVPEDVLRSMFKQMKEYRGLVWPV 150 (300)
T ss_pred cCCeEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccC---cCCCCHHHHHHHHHHHHHhcCCCCce
Confidence 357899999999999997665422 1222 2689999999999999 453 333 355555 9999999999999
Q ss_pred HHHhhhCCcEEEEeCCCChHHH
Q psy11031 128 TDFFDQRGMLIAVNGERNPVEV 149 (520)
Q Consensus 128 i~~Y~~~~~l~~Ida~~~~eeV 149 (520)
+..|..+..++.+|.+.+..++
T Consensus 151 ~~~~~~~~~~~~~D~dgtl~~~ 172 (300)
T PHA02530 151 YTADPGLPKAVIFDIDGTLAKM 172 (300)
T ss_pred eccCCCCCCEEEEECCCcCcCC
Confidence 9999887788999999887764
No 176
>PLN02772 guanylate kinase
Probab=97.54 E-value=0.0015 Score=69.16 Aligned_cols=161 Identities=12% Similarity=0.203 Sum_probs=85.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcch--------HHHHhhhhcCCccchHH---
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLN--------SRIKSSVSAGDFVNRDV--- 292 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g--------~~i~~~l~~G~~vPd~l--- 292 (520)
..+.|+|+||.||||+|++++|.+.++....+++..--| .. ..+..-| +.+...+.+|..+--..
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR---~p-R~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~G 209 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTR---AP-REMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHG 209 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCC---CC-cccccCCceEeeCCHHHHHHHHHhCccceeeeecC
Confidence 446899999999999999999988763333334433444 11 1111111 23444444444322110
Q ss_pred -----HHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCC--hhhh-h--ccCCCCCHHHHHHH
Q psy11031 293 -----VLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCS--KLVL-H--KGQIDNSVSAFRRR 362 (520)
Q Consensus 293 -----v~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~--~~~~-~--r~R~dD~~e~~~~R 362 (520)
-.+-+...+. .++.+|||= +..-+..+.+... ..++++-++ .+.+ . +.|...+++.+++|
T Consensus 210 n~YGTsk~~V~~vl~-----~Gk~vILdL---D~qGar~Lr~~~l--~~v~IFI~PPSlEeLe~RL~~RGteseE~I~kR 279 (398)
T PLN02772 210 NLYGTSIEAVEVVTD-----SGKRCILDI---DVQGARSVRASSL--EAIFIFICPPSMEELEKRLRARGTETEEQIQKR 279 (398)
T ss_pred ccccccHHHHHHHHH-----hCCcEEEeC---CHHHHHHHHHhcC--CeEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHH
Confidence 1222233233 356678773 3444555554432 334444444 2322 2 35666788999999
Q ss_pred HHHHHHHhHHHH--HHhhhCCCEEEEECCCCHHHHHHHHHHHHH
Q psy11031 363 LELFRERTLPML--RAMDVETRLTIVDGDTQLPQVREEFERVLK 404 (520)
Q Consensus 363 l~~f~~~~~~l~--~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~ 404 (520)
+..+........ .+|+ .+ |..+ +.++-++++.++|.
T Consensus 280 L~~A~~Ei~~~~~~~~fD----~v-IvND-dLe~A~~~L~~iL~ 317 (398)
T PLN02772 280 LRNAEAELEQGKSSGIFD----HI-LYND-NLEECYKNLKKLLG 317 (398)
T ss_pred HHHHHHHHhhccccCCCC----EE-EECC-CHHHHHHHHHHHHh
Confidence 998865432110 1232 23 4444 78888888877763
No 177
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.51 E-value=0.00086 Score=68.03 Aligned_cols=104 Identities=14% Similarity=0.133 Sum_probs=51.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhC----CCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHH
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDY----PNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEM 301 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~----~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l 301 (520)
|.|+|+|.|||||||.|+.|++.+ ....+++-.++.-. ...=..+...+.++.. +...++..+
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~--~~~y~~~~~Ek~~R~~-----------l~s~v~r~l 68 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGID--RNDYADSKKEKEARGS-----------LKSAVERAL 68 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-T--TSSS--GGGHHHHHHH-----------HHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccc--hhhhhchhhhHHHHHH-----------HHHHHHHhh
Confidence 469999999999999999999852 14455664444320 1100011111222221 222233333
Q ss_pred hccccCCCcEEEEeC--CCCC-HHHHHHHHhhcCCCCCEEEecCChhhh
Q psy11031 302 KKTKYTEADGIVIDG--FPRE-MSQLIDFENKYQIHPPMILIDCSKLVL 347 (520)
Q Consensus 302 ~~~~~~~~~G~ILDG--FPrt-~~Qae~l~~~~~~p~~VI~Ld~~~~~~ 347 (520)
. ...-+|+|+ |=+. .-+.-.+-+..+...++|+++|+.+.+
T Consensus 69 s-----~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~ 112 (270)
T PF08433_consen 69 S-----KDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETC 112 (270)
T ss_dssp T-----T-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHH
T ss_pred c-----cCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHH
Confidence 3 357899997 3233 334555556666667899999998764
No 178
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.51 E-value=0.0007 Score=63.91 Aligned_cols=157 Identities=17% Similarity=0.205 Sum_probs=83.5
Q ss_pred CCCCCeEEEEEcCCCCChhHHHHHHHhhCC--CC-eeeehhhHHhhhhcccccCCcch--HHHHhhhhcCCccchHHHHH
Q psy11031 221 ERNTPLVVWVVGGPGSSKSEMCQKVLQDYP--NW-TQISLGKLLRYFANIEDDGEGLN--SRIKSSVSAGDFVNRDVVLD 295 (520)
Q Consensus 221 ~~~~p~~I~vlG~PGSGKsT~a~~La~k~~--g~-~~is~gdLlr~~~~~~~~~t~~g--~~i~~~l~~G~~vPd~lv~~ 295 (520)
...++.+||+.|.+||||||+|..|.+++. |. .++=-||-+| +.+..+-... ........ +.
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR---~gL~~dLgFs~edR~eniRR----------va 85 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVR---HGLNRDLGFSREDRIENIRR----------VA 85 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHh---hcccCCCCCChHHHHHHHHH----------HH
Confidence 456788999999999999999999988752 32 3334457777 4432211111 11111111 01
Q ss_pred HHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhh-cCCC-CCEEEecCChhhhhccCCCCCHHHHHHHHHHHHHHhHH-
Q psy11031 296 IVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENK-YQIH-PPMILIDCSKLVLHKGQIDNSVSAFRRRLELFRERTLP- 372 (520)
Q Consensus 296 ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~-~~~p-~~VI~Ld~~~~~~~r~R~dD~~e~~~~Rl~~f~~~~~~- 372 (520)
-+.+.|. ....+||--|-.-......+-.. ++.. ..=||++||.+++.++-+. -.|.+....
T Consensus 86 evAkll~-----daG~iviva~ISP~r~~R~~aR~~~~~~~FiEVyV~~pl~vce~RDpK----------GLYkKAr~Ge 150 (197)
T COG0529 86 EVAKLLA-----DAGLIVIVAFISPYREDRQMARELLGEGEFIEVYVDTPLEVCERRDPK----------GLYKKARAGE 150 (197)
T ss_pred HHHHHHH-----HCCeEEEEEeeCccHHHHHHHHHHhCcCceEEEEeCCCHHHHHhcCch----------HHHHHHHcCC
Confidence 1112222 23457777774433332222222 2222 3358999999876543221 123333222
Q ss_pred ------HHHHhhh-CCCEEEEECC-CCHHHHHHHHHHHHHH
Q psy11031 373 ------MLRAMDV-ETRLTIVDGD-TQLPQVREEFERVLKK 405 (520)
Q Consensus 373 ------l~~~y~~-~~~l~~IDa~-~~~e~V~~~I~~~I~~ 405 (520)
+-.-|+. .+--+.+|.+ .++++-.+.|...+..
T Consensus 151 I~~fTGid~pYE~P~~Pel~l~t~~~~vee~v~~i~~~l~~ 191 (197)
T COG0529 151 IKNFTGIDSPYEAPENPELHLDTDRNSVEECVEQILDLLKE 191 (197)
T ss_pred CCCCcCCCCCCCCCCCCeeEeccccCCHHHHHHHHHHHHHh
Confidence 2234543 3445678864 7788877777766643
No 179
>PRK13975 thymidylate kinase; Provisional
Probab=97.49 E-value=0.0026 Score=60.59 Aligned_cols=139 Identities=9% Similarity=0.082 Sum_probs=82.9
Q ss_pred cccCcHHHHHHHHHHccCCCCCCCCHHHHHHHH-HHHHh------cCCCCCcEEEeCCCCCH--Hh--------H-HHHH
Q psy11031 15 PSHRNPLKMFNLFVSEEVKDFSFLSSKTVTEVL-MLEMK------MSPAAKAFLISGYPRNM--RD--------V-VEYS 76 (520)
Q Consensus 15 ~~h~s~G~~l~~~i~~G~~~g~lVPdelv~~ll-~~~l~------~~~~~~G~ILDGFPRt~--~Q--------A-~~~~ 76 (520)
|....+|+.++.++..+. +-| ..+..+. .++.. ..-....+|+|.|..+- -| . ..+.
T Consensus 34 ~~~~~~g~~ir~~~~~~~----~~~-~~~~~~f~~~r~~~~~~i~~~~~~~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~ 108 (196)
T PRK13975 34 PTDGKIGKLIREILSGSK----CDK-ETLALLFAADRVEHVKEIEEDLKKRDVVCDRYVYSSIAYQSVQGIDEDFIYSIN 108 (196)
T ss_pred CCCChHHHHHHHHHccCC----CCH-HHHHHHHHHHHHHHHHHHHHHHcCCEEEEECchhHHHHHhcccCCCHHHHHHHH
Confidence 444567899999887653 333 2222222 22221 11123678999887541 11 0 0111
Q ss_pred HhcCCcCEEEEEEcCHHHHHHHhh-hCccCCccchHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCC-CChHHHHHHHH
Q psy11031 77 DKIKTINGVILIAWRQSLLERQID-YGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGE-RNPVEVYADFR 154 (520)
Q Consensus 77 ~~~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~-~~~eeV~~~i~ 154 (520)
.....||++|+|++|.+++.+|+. |+.... ...+...++...|.+... .++|......+.||++ +++++|+++|.
T Consensus 109 ~~~~~pd~vi~L~~~~e~~~~Rl~~r~~~~~-~~~~~~~~~~~~y~~~~~--~~~~~~~~~~~~Id~~~~~~eev~~~I~ 185 (196)
T PRK13975 109 RYAKKPDLVFLLDVDIEEALKRMETRDKEIF-EKKEFLKKVQEKYLELAN--NEKFMPKYGFIVIDTTNKSIEEVFNEIL 185 (196)
T ss_pred hCCCCCCEEEEEcCCHHHHHHHHhccCcccc-chHHHHHHHHHHHHHHHh--hcccCCcCCEEEEECCCCCHHHHHHHHH
Confidence 123479999999999999999994 431100 113344555566655444 3334334458999996 89999999999
Q ss_pred HHHHHHh
Q psy11031 155 TAVLKIL 161 (520)
Q Consensus 155 ~~l~~~~ 161 (520)
+.+...+
T Consensus 186 ~~i~~~~ 192 (196)
T PRK13975 186 NKIKDKI 192 (196)
T ss_pred HHHHHhC
Confidence 9998765
No 180
>PRK07429 phosphoribulokinase; Provisional
Probab=97.48 E-value=0.0012 Score=68.69 Aligned_cols=39 Identities=18% Similarity=0.264 Sum_probs=32.9
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCCC---CeeeehhhHH
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPN---WTQISLGKLL 261 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g---~~~is~gdLl 261 (520)
..++.+|.|.|++||||||+|+.|++.+ + ...++.+++.
T Consensus 5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll-~~~~~~vi~~Dd~~ 46 (327)
T PRK07429 5 PDRPVLLGVAGDSGCGKTTFLRGLADLL-GEELVTVICTDDYH 46 (327)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHhHh-ccCceEEEEecccc
Confidence 4568899999999999999999999886 5 5677887764
No 181
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.41 E-value=0.00073 Score=66.57 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
..+.+|.|.|++||||||+++.|+..+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999998865
No 182
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.39 E-value=0.0026 Score=68.07 Aligned_cols=34 Identities=26% Similarity=0.270 Sum_probs=29.9
Q ss_pred CCCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeee
Q psy11031 221 ERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI 255 (520)
Q Consensus 221 ~~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i 255 (520)
.+-...+|+|+|++||||||+++.|++.| |...+
T Consensus 215 r~~~~~~IvI~G~~gsGKTTL~~~La~~~-g~~~v 248 (399)
T PRK08099 215 RPFFVRTVAILGGESSGKSTLVNKLANIF-NTTSA 248 (399)
T ss_pred hhCCCcEEEEEcCCCCCHHHHHHHHHHHh-CCCee
Confidence 46678899999999999999999999997 77654
No 183
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.35 E-value=0.00069 Score=66.22 Aligned_cols=145 Identities=16% Similarity=0.208 Sum_probs=76.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCC---eeeehhhHHhhhhcccc-cC---------Cc-------chHHHHhhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNW---TQISLGKLLRYFANIED-DG---------EG-------LNSRIKSSV 282 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~---~~is~gdLlr~~~~~~~-~~---------t~-------~g~~i~~~l 282 (520)
.++.+|-|-|++||||||+|+.|++.+ +. ..||.++..+ .... .. .+ +.+.+.. +
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~-~~~~~~~I~~D~YYk---~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~-L 80 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQL-GVEKVVVISLDDYYK---DQSHLPFEERNKINYDHPEAFDLDLLIEHLKD-L 80 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHh-CcCcceEeecccccc---chhhcCHhhcCCcCccChhhhcHHHHHHHHHH-H
Confidence 345789999999999999999999997 63 4778877776 1110 00 00 1111211 2
Q ss_pred hcCCccchHHHHHHHHHHHhc-cccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhccCC-CCC---HH
Q psy11031 283 SAGDFVNRDVVLDIVYAEMKK-TKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHKGQI-DNS---VS 357 (520)
Q Consensus 283 ~~G~~vPd~lv~~ll~~~l~~-~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r~R~-dD~---~e 357 (520)
.+|+.+......=.-..+... .......-+||+|+--=.+ +.+... .+.-||++++.+.+..+|- .|. -.
T Consensus 81 ~~g~~v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d--~~lr~~---~d~kIfvdtd~D~RliRri~RD~~~rg~ 155 (218)
T COG0572 81 KQGKPVDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYD--ERLRDL---MDLKIFVDTDADVRLIRRIKRDVQERGR 155 (218)
T ss_pred HcCCcccccccchhcccccCCccccCCCcEEEEeccccccc--HHHHhh---cCEEEEEeCCccHHHHHHHHHHHHHhCC
Confidence 233332221111110111100 0112356789999632211 222222 3567999999876421110 010 11
Q ss_pred HHHHHHHHHHHHhHHHHHHh
Q psy11031 358 AFRRRLELFRERTLPMLRAM 377 (520)
Q Consensus 358 ~~~~Rl~~f~~~~~~l~~~y 377 (520)
.+...++.|.....|+.+.|
T Consensus 156 ~~e~vi~qy~~~vkp~~~~f 175 (218)
T COG0572 156 DLESVIEQYVKTVRPMYEQF 175 (218)
T ss_pred CHHHHHHHHHHhhChhhhhc
Confidence 24456778888888887766
No 184
>PRK06217 hypothetical protein; Validated
Probab=97.30 E-value=0.0016 Score=61.83 Aligned_cols=138 Identities=11% Similarity=0.126 Sum_probs=86.4
Q ss_pred cccCcccCcHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEc
Q psy11031 11 LLDFPSHRNPLKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAW 90 (520)
Q Consensus 11 ~~~~~~h~s~G~~l~~~i~~G~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~ 90 (520)
.++++ |++++..+.. ..+..-+.-.|++....++.+.+.. ..+|||||+|..... .+ ...+|.+|+|++
T Consensus 24 ~l~~~-~~~~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~vi~G~~~~~~~--~~---~~~~d~~i~Ld~ 92 (183)
T PRK06217 24 RLDIP-HLDTDDYFWL--PTDPPFTTKRPPEERLRLLLEDLRP---REGWVLSGSALGWGD--PL---EPLFDLVVFLTI 92 (183)
T ss_pred HcCCc-EEEcCceeec--cCCCCccccCCHHHHHHHHHHHHhc---CCCEEEEccHHHHHH--HH---HhhCCEEEEEEC
Confidence 34666 7777776542 2222223456787777777777642 468999999975322 11 235889999999
Q ss_pred CHHHHHHHhh-hCc-cCCc-----cc----hHHHHHHHHHHHhcc---chHHH---Hhhh-CCcEEEEeCCCChHHHHHH
Q psy11031 91 RQSLLERQID-YGA-KLGH-----VI----LSLARMELANFYQNV---TPVTD---FFDQ-RGMLIAVNGERNPVEVYAD 152 (520)
Q Consensus 91 pd~~l~~Rl~-rg~-~~~r-----~d----~e~i~~Rl~~Y~~~t---~pvi~---~Y~~-~~~l~~Ida~~~~eeV~~~ 152 (520)
|.+++.+|+. |.. ..++ .+ ...+.++...|.... ..+.. ++.. .+.++.+++.++++++.++
T Consensus 93 ~~~~~~~Rl~~R~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~ 172 (183)
T PRK06217 93 PPELRLERLRLREFQRYGNRILPGGDMHKASLEFLEWAASYDTAGPEGRSLAAHEQWLADQSCPVLRLDGDLTVEDLLDE 172 (183)
T ss_pred CHHHHHHHHHcCcccccCcccCCCCCHHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHH
Confidence 9999999994 321 1122 11 122445555555422 12222 2222 2568889999999999999
Q ss_pred HHHHHHH
Q psy11031 153 FRTAVLK 159 (520)
Q Consensus 153 i~~~l~~ 159 (520)
|...|.+
T Consensus 173 i~~~~~~ 179 (183)
T PRK06217 173 VLDHLAS 179 (183)
T ss_pred HHHHHhc
Confidence 9998854
No 185
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=97.29 E-value=0.0057 Score=56.23 Aligned_cols=151 Identities=16% Similarity=0.116 Sum_probs=82.5
Q ss_pred EcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHH---HHHHHHHHhccccC
Q psy11031 231 VGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVV---LDIVYAEMKKTKYT 307 (520)
Q Consensus 231 lG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv---~~ll~~~l~~~~~~ 307 (520)
+|-.||||||+++.|++++ |+..|.-++|=- .+ -| +-|..|.++.|+-- ++.+..++.+ ...
T Consensus 1 MGVsG~GKStvg~~lA~~l-g~~fidGDdlHp---~a---------Ni-~KM~~GiPL~DdDR~pWL~~l~~~~~~-~~~ 65 (161)
T COG3265 1 MGVSGSGKSTVGSALAERL-GAKFIDGDDLHP---PA---------NI-EKMSAGIPLNDDDRWPWLEALGDAAAS-LAQ 65 (161)
T ss_pred CCCCccCHHHHHHHHHHHc-CCceecccccCC---HH---------HH-HHHhCCCCCCcchhhHHHHHHHHHHHH-hhc
Confidence 4889999999999999997 999998876643 11 11 23667777776432 2333444441 222
Q ss_pred CCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-c--cCCC--CCHHHHHHHHHHHHHHhHHHHHHhhhCCC
Q psy11031 308 EADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-K--GQID--NSVSAFRRRLELFRERTLPMLRAMDVETR 382 (520)
Q Consensus 308 ~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r--~R~d--D~~e~~~~Rl~~f~~~~~~l~~~y~~~~~ 382 (520)
.++..||----. ..+-..+-......-.+|||+.+.+... | .|.. ...+-++..++ .+ +-=.....
T Consensus 66 ~~~~~vi~CSAL-Kr~YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R~gHFM~~~ll~SQfa-------~L-E~P~~de~ 136 (161)
T COG3265 66 KNKHVVIACSAL-KRSYRDLLREANPGLRFVYLDGDFDLILERMKARKGHFMPASLLDSQFA-------TL-EEPGADED 136 (161)
T ss_pred CCCceEEecHHH-HHHHHHHHhccCCCeEEEEecCCHHHHHHHHHhcccCCCCHHHHHHHHH-------Hh-cCCCCCCC
Confidence 333333322111 1122222222121234788998887532 1 2322 22332222111 11 11111125
Q ss_pred EEEEECCCCHHHHHHHHHHHHHH
Q psy11031 383 LTIVDGDTQLPQVREEFERVLKK 405 (520)
Q Consensus 383 l~~IDa~~~~e~V~~~I~~~I~~ 405 (520)
+++||.++++++|.+++...|..
T Consensus 137 vi~idi~~~~e~vv~~~~~~l~~ 159 (161)
T COG3265 137 VLTIDIDQPPEEVVAQALAWLKE 159 (161)
T ss_pred EEEeeCCCCHHHHHHHHHHHHhc
Confidence 88999999999999998887754
No 186
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.29 E-value=0.00089 Score=65.12 Aligned_cols=113 Identities=18% Similarity=0.282 Sum_probs=59.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCC--cchHHH---------HhhhhcCCccchHHHH
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGE--GLNSRI---------KSSVSAGDFVNRDVVL 294 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t--~~g~~i---------~~~l~~G~~vPd~lv~ 294 (520)
.+++|.||+|+|||.+|-.||+++ |++.|+.+.+... .....+| +.-..+ ...+..|. ++.+-..
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~-g~pvI~~Driq~y--~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~-i~a~ea~ 77 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKT-GAPVISLDRIQCY--PELSVGSGRPTPSELKGTRRIYLDDRPLSDGI-INAEEAH 77 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH---EEEEE-SGGG---GGGTTTTT---SGGGTT-EEEES----GGG-S---HHHHH
T ss_pred cEEEEECCCCCChhHHHHHHHHHh-CCCEEEecceecc--cccccccCCCCHHHHcccceeeeccccccCCC-cCHHHHH
Confidence 468999999999999999999998 9999999876552 2332222 111111 22355676 4444466
Q ss_pred HHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcC-CCC--CEEEecCChh
Q psy11031 295 DIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQ-IHP--PMILIDCSKL 345 (520)
Q Consensus 295 ~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~-~p~--~VI~Ld~~~~ 345 (520)
+.+..++. ....+.|+||+|=--++-.+-. ..... .+. .|..+.+++.
T Consensus 78 ~~Li~~v~--~~~~~~~~IlEGGSISLl~~m~-~~~~w~~~f~w~i~rl~l~d~ 128 (233)
T PF01745_consen 78 ERLISEVN--SYSAHGGLILEGGSISLLNCMA-QDPYWSLDFRWHIRRLRLPDE 128 (233)
T ss_dssp HHHHHHHH--TTTTSSEEEEEE--HHHHHHHH-H-TTTSSSSEEEEEE-----H
T ss_pred HHHHHHHH--hccccCceEEeCchHHHHHHHH-hcccccCCCeEEEEEEECCCh
Confidence 66667777 4455899999996444333321 11222 222 3677777764
No 187
>PRK00698 tmk thymidylate kinase; Validated
Probab=97.28 E-value=0.011 Score=56.33 Aligned_cols=141 Identities=6% Similarity=-0.024 Sum_probs=80.2
Q ss_pred cCcccCcHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhc--------CCCCCcEEEeCCCCCH------------HhH
Q psy11031 13 DFPSHRNPLKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMKM--------SPAAKAFLISGYPRNM------------RDV 72 (520)
Q Consensus 13 ~~~~h~s~G~~l~~~i~~G~~~g~lVPdelv~~ll~~~l~~--------~~~~~G~ILDGFPRt~------------~QA 72 (520)
..|.....|..++.++... .....+.....-.+..+... ......+|+|-|+-+. ...
T Consensus 38 ~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~r~~~~~~~i~~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~ 115 (205)
T PRK00698 38 REPGGTPLGEKLRELLLDP--NEEMDDKTELLLFYAARAQHLEEVIKPALARGKWVISDRFIDSSLAYQGGGRGLDIDLL 115 (205)
T ss_pred eCCCCChHHHHHHHHHhcc--ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCchhHHHHHCCCCCCCCHHHH
Confidence 3454556889999988741 12244444332222222111 0124568999555331 111
Q ss_pred HH---HHHhcCCcCEEEEEEcCHHHHHHHhh-hCccCCccch--HHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCCh
Q psy11031 73 VE---YSDKIKTINGVILIAWRQSLLERQID-YGAKLGHVIL--SLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNP 146 (520)
Q Consensus 73 ~~---~~~~~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d~--e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~ 146 (520)
.. +......||++|+|++|.+++.+|+. |+.. .+.+. ....+|+..+++. +.+.+. ..++.||+++++
T Consensus 116 ~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R~~~-~~~~~~~~~~~~~~~~~y~~---~~~~~~--~~~~~Id~~~~~ 189 (205)
T PRK00698 116 LALNDFALGGFRPDLTLYLDVPPEVGLARIRARGEL-DRIEQEGLDFFERVREGYLE---LAEKEP--ERIVVIDASQSL 189 (205)
T ss_pred HHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCc-chhhhhhHHHHHHHHHHHHH---HHHhCC--CeEEEEeCCCCH
Confidence 11 11222579999999999999999994 5421 12211 1334455433332 222332 347899999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy11031 147 VEVYADFRTAVLKIL 161 (520)
Q Consensus 147 eeV~~~i~~~l~~~~ 161 (520)
++|+++|.+++...+
T Consensus 190 e~v~~~i~~~i~~~~ 204 (205)
T PRK00698 190 EEVHEDILAVIKAWL 204 (205)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999987654
No 188
>PLN02348 phosphoribulokinase
Probab=97.23 E-value=0.0015 Score=69.18 Aligned_cols=28 Identities=14% Similarity=0.338 Sum_probs=25.4
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
...|.+|-|.|++||||||+|+.|++.+
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~L 73 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSVF 73 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999999999986
No 189
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.18 E-value=0.0034 Score=63.05 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
.+..+++.||||+||||+|+.+++.
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~ 65 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKL 65 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHH
Confidence 3566999999999999999999875
No 190
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.18 E-value=0.00036 Score=61.34 Aligned_cols=34 Identities=21% Similarity=0.419 Sum_probs=27.9
Q ss_pred EEEEcCCCCChhHHHHHHHhhCCCCee--eehhhHHh
Q psy11031 228 VWVVGGPGSSKSEMCQKVLQDYPNWTQ--ISLGKLLR 262 (520)
Q Consensus 228 I~vlG~PGSGKsT~a~~La~k~~g~~~--is~gdLlr 262 (520)
|+|.||||+||||+|+.+++.+ +... ++.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l-~~~~~~i~~~~~~~ 36 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL-GFPFIEIDGSELIS 36 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT-TSEEEEEETTHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc-cccccccccccccc
Confidence 6899999999999999999997 8654 55555553
No 191
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=97.14 E-value=0.0072 Score=57.46 Aligned_cols=133 Identities=14% Similarity=0.088 Sum_probs=70.8
Q ss_pred CcccCcHHHHHHHHHHccCCCCCCCCHHHHH--------HHHHHHHhcC-CCCCcEEEe----------CCCCCHHhH--
Q psy11031 14 FPSHRNPLKMFNLFVSEEVKDFSFLSSKTVT--------EVLMLEMKMS-PAAKAFLIS----------GYPRNMRDV-- 72 (520)
Q Consensus 14 ~~~h~s~G~~l~~~i~~G~~~g~lVPdelv~--------~ll~~~l~~~-~~~~G~ILD----------GFPRt~~QA-- 72 (520)
.|.....|..++.++..+. ...+.+.... +.+.+.+... ....-+|+| |++++....
T Consensus 39 ~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~l~~~~r~~~~~~~i~~~l~~~~~VI~DR~~~s~~ay~~~~~~~~~~~~ 116 (195)
T TIGR00041 39 EPGGTPIGEKIRELLLNEN--DEPLTDKAEALLFAADRHEHLEDKIKPALAEGKLVISDRYVFSSIAYQGGARGIDEDLV 116 (195)
T ss_pred CCCCChHHHHHHHHHcCCC--ccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCcccHHHHHccccCCCCHHHH
Confidence 4444568899999876443 1123322111 1111212110 112335677 567665543
Q ss_pred HHHHHhcCC--cCEEEEEEcCHHHHHHHhh-hCccCCccchHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHH
Q psy11031 73 VEYSDKIKT--INGVILIAWRQSLLERQID-YGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEV 149 (520)
Q Consensus 73 ~~~~~~~~~--pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV 149 (520)
..+...... ||++|+|++|.+++.+|+. |+.. +.+.. .....+......-.+++.+...++.|||++++++|
T Consensus 117 ~~l~~~~~~~~~d~~i~l~~~~~~~~~R~~~r~~~----~~~~~-~~~~~~~~~~~~y~~~~~~~~~~~~id~~~~~e~v 191 (195)
T TIGR00041 117 LELNEDALGDMPDLTIYLDIDPEVALERLRKRGEL----DREEF-EKLDFFEKVRQRYLELADKEKSIHVIDATNSVEEV 191 (195)
T ss_pred HHHHHHhhCCCCCEEEEEeCCHHHHHHHHHhcCCc----chHHH-HHHHHHHHHHHHHHHHHcCCCcEEEEeCCCCHHHH
Confidence 222333333 9999999999999999984 4332 11111 11122222222223344434468999999999999
Q ss_pred HHHH
Q psy11031 150 YADF 153 (520)
Q Consensus 150 ~~~i 153 (520)
.++|
T Consensus 192 ~~~i 195 (195)
T TIGR00041 192 EQDI 195 (195)
T ss_pred HhhC
Confidence 8764
No 192
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.12 E-value=0.0035 Score=63.74 Aligned_cols=36 Identities=22% Similarity=0.295 Sum_probs=28.6
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCC--CCeeeehhhHHh
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYP--NWTQISLGKLLR 262 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~--g~~~is~gdLlr 262 (520)
+|.|.|++||||||+++.|++.+. +...++.+++.+
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~ 38 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHS 38 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECccccc
Confidence 378999999999999999997642 456788876643
No 193
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.03 E-value=0.002 Score=58.45 Aligned_cols=22 Identities=23% Similarity=0.588 Sum_probs=20.7
Q ss_pred EEEEcCCCCChhHHHHHHHhhC
Q psy11031 228 VWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 228 I~vlG~PGSGKsT~a~~La~k~ 249 (520)
|+|+||+||||||+++.|++.+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 7899999999999999999876
No 194
>PF05729 NACHT: NACHT domain
Probab=96.89 E-value=0.0016 Score=59.41 Aligned_cols=23 Identities=43% Similarity=0.863 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHHhhC
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
.++|.|+|||||||+++.++..+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 58999999999999999998754
No 195
>PLN02165 adenylate isopentenyltransferase
Probab=96.79 E-value=0.0013 Score=68.43 Aligned_cols=38 Identities=24% Similarity=0.325 Sum_probs=33.7
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhH
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKL 260 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdL 260 (520)
.....+|+|+||+||||||+|..|++.+ +...+|++.+
T Consensus 40 ~~~g~iivIiGPTGSGKStLA~~LA~~l-~~eIIsaDs~ 77 (334)
T PLN02165 40 NCKDKVVVIMGATGSGKSRLSVDLATRF-PSEIINSDKM 77 (334)
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHHHHc-CCceecCChh
Confidence 3456689999999999999999999997 9999999876
No 196
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.78 E-value=0.0011 Score=57.42 Aligned_cols=25 Identities=28% Similarity=0.581 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
...++|+|||||||||+++.|+..+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc
Confidence 4579999999999999999999886
No 197
>PLN02924 thymidylate kinase
Probab=96.78 E-value=0.053 Score=53.38 Aligned_cols=137 Identities=12% Similarity=0.132 Sum_probs=79.6
Q ss_pred ccCcc-cCcHHHHHHHHHHccCCCCCCCCHHHHH-HHHHHHHhc-------CCCCCcEEEeCCCCCH-----------Hh
Q psy11031 12 LDFPS-HRNPLKMFNLFVSEEVKDFSFLSSKTVT-EVLMLEMKM-------SPAAKAFLISGYPRNM-----------RD 71 (520)
Q Consensus 12 ~~~~~-h~s~G~~l~~~i~~G~~~g~lVPdelv~-~ll~~~l~~-------~~~~~G~ILDGFPRt~-----------~Q 71 (520)
+..|. .+.+|+.++.++..+. .+...... =....|... ......+|+|-|.-+- +-
T Consensus 50 ~~ep~~~~~~g~~ir~~l~~~~----~~~~~~~~llf~adR~~~~~~I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~ 125 (220)
T PLN02924 50 WRFPDRTTSVGQMISAYLSNKS----QLDDRAIHLLFSANRWEKRSLMERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEW 125 (220)
T ss_pred eeCCCCCChHHHHHHHHHhCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEccchhHHHHHHHhcCCCHHH
Confidence 33453 4778999999998764 44333221 111112110 0134568999888632 11
Q ss_pred HHHHHHhcCCcCEEEEEEcCHHHHHHHhhhCccCCccchHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHH
Q psy11031 72 VVEYSDKIKTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYA 151 (520)
Q Consensus 72 A~~~~~~~~~pd~VI~L~~pd~~l~~Rl~rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~ 151 (520)
...+......||++|+|++|.+++.+|...+. .|.+.....+|+...+... .+ ..++.|||++++++|++
T Consensus 126 ~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~~~~--~~~E~~~~~~rv~~~Y~~l-------a~-~~~~vIDa~~sieeV~~ 195 (220)
T PLN02924 126 CKAPEVGLPAPDLVLYLDISPEEAAERGGYGG--ERYEKLEFQKKVAKRFQTL-------RD-SSWKIIDASQSIEEVEK 195 (220)
T ss_pred HHHHHhCCCCCCEEEEEeCCHHHHHHHhccCc--cccccHHHHHHHHHHHHHH-------hh-cCEEEECCCCCHHHHHH
Confidence 11122223479999999999999999974221 1211112223332222222 11 34788999999999999
Q ss_pred HHHHHHHHHhc
Q psy11031 152 DFRTAVLKILN 162 (520)
Q Consensus 152 ~i~~~l~~~~~ 162 (520)
+|.+.|...+.
T Consensus 196 ~I~~~I~~~l~ 206 (220)
T PLN02924 196 KIREVVLDTVQ 206 (220)
T ss_pred HHHHHHHHHHH
Confidence 99999988763
No 198
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=96.77 E-value=0.0014 Score=67.77 Aligned_cols=36 Identities=25% Similarity=0.363 Sum_probs=32.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhH
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKL 260 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdL 260 (520)
.+++|+|+||+|||||++|..|++++ +...||++.+
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~-~~~iis~Ds~ 38 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRL-NGEIISADSM 38 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhC-CCcEEecccc
Confidence 35789999999999999999999997 9999999873
No 199
>PLN02748 tRNA dimethylallyltransferase
Probab=96.75 E-value=0.0017 Score=70.49 Aligned_cols=41 Identities=22% Similarity=0.341 Sum_probs=36.0
Q ss_pred CCCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhh--HHh
Q psy11031 221 ERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGK--LLR 262 (520)
Q Consensus 221 ~~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gd--Llr 262 (520)
...++++|+|+||+|||||++|..|++++ +...||.+. +++
T Consensus 18 ~~~~~~~i~i~GptgsGKs~la~~la~~~-~~eii~~DsmQVYr 60 (468)
T PLN02748 18 QKGKAKVVVVMGPTGSGKSKLAVDLASHF-PVEIINADSMQVYS 60 (468)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHhc-CeeEEcCchheeeC
Confidence 45677899999999999999999999998 999999973 555
No 200
>PHA00729 NTP-binding motif containing protein
Probab=96.73 E-value=0.0055 Score=60.46 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
..|+|+|+||+||||+|..|+++.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999985
No 201
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.72 E-value=0.0012 Score=62.64 Aligned_cols=36 Identities=28% Similarity=0.311 Sum_probs=31.4
Q ss_pred EEEEEcCCCCChhHHHHHHHhhC----CCCeeeehhhHHh
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDY----PNWTQISLGKLLR 262 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~----~g~~~is~gdLlr 262 (520)
+|.|.|++||||||+|+.|++.+ .+...|++++..+
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~ 40 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV 40 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence 48899999999999999999874 2568899999987
No 202
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.71 E-value=0.0093 Score=59.67 Aligned_cols=32 Identities=22% Similarity=0.373 Sum_probs=28.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeeh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISL 257 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~ 257 (520)
|+.|++.||||.|||.+|+.||.+. ..+.+.+
T Consensus 151 PknVLFyGppGTGKTm~Akalane~-kvp~l~v 182 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMAKALANEA-KVPLLLV 182 (368)
T ss_pred cceeEEECCCCccHHHHHHHHhccc-CCceEEe
Confidence 6789999999999999999999986 7777665
No 203
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.69 E-value=0.0027 Score=59.95 Aligned_cols=23 Identities=26% Similarity=0.572 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhHHHHHHHhhC
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
+++|+|++|||||+.|..++...
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~ 23 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAEL 23 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc
Confidence 37999999999999999998764
No 204
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=96.63 E-value=0.048 Score=55.47 Aligned_cols=89 Identities=20% Similarity=0.283 Sum_probs=53.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhccc
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTK 305 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~ 305 (520)
.+|+|.|..||||||-.+.|- .. ||..++ .+|..++.++++....+..
T Consensus 2 ~~vIiTGlSGaGKs~Al~~lE-D~-Gy~cvD------------------------------NlP~~Ll~~l~~~~~~~~~ 49 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRALE-DL-GYYCVD------------------------------NLPPSLLPQLIELLAQSNS 49 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHHH-hc-CeeEEc------------------------------CCcHHHHHHHHHHHHhcCC
Confidence 468999999999999998764 44 655441 3455666666654332101
Q ss_pred cCCCcEEEEe----CCCCCHHHH-HHHHhhcCCCCCEEEecCChhhh
Q psy11031 306 YTEADGIVID----GFPREMSQL-IDFENKYQIHPPMILIDCSKLVL 347 (520)
Q Consensus 306 ~~~~~G~ILD----GFPrt~~Qa-e~l~~~~~~p~~VI~Ld~~~~~~ 347 (520)
....-.++|| +|...+.++ ..+.+. +....++||+|+++++
T Consensus 50 ~~~~~Ai~iD~R~~~~~~~~~~~~~~l~~~-~~~~~ilFLdA~d~~L 95 (284)
T PF03668_consen 50 KIEKVAIVIDIRSREFFEDLFEALDELRKK-GIDVRILFLDASDEVL 95 (284)
T ss_pred CCceEEEEEeCCChHHHHHHHHHHHHHHhc-CCceEEEEEECChHHH
Confidence 1112357788 343333332 233332 4445699999999875
No 205
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.60 E-value=0.0038 Score=55.02 Aligned_cols=97 Identities=11% Similarity=0.120 Sum_probs=48.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCC---------CCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCc--cchHHH
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYP---------NWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDF--VNRDVV 293 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~---------g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~--vPd~lv 293 (520)
...++|.|++|||||++++.+++.+. .+.++.+.... ....+...+...+..... ...+-+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~i~~~l~~~~~~~~~~~~l 75 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR--------TPRDFAQEILEALGLPLKSRQTSDEL 75 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS--------SHHHHHHHHHHHHT-SSSSTS-HHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC--------CHHHHHHHHHHHhCccccccCCHHHH
Confidence 45699999999999999999998641 22333332111 111233334333332211 123333
Q ss_pred HHHHHHHHhccccCCCcEEEEeCCCC--CHHHHHHHHhhcC
Q psy11031 294 LDIVYAEMKKTKYTEADGIVIDGFPR--EMSQLIDFENKYQ 332 (520)
Q Consensus 294 ~~ll~~~l~~~~~~~~~G~ILDGFPr--t~~Qae~l~~~~~ 332 (520)
.+.+.+.+.+ .. ..-+|||.+=. +....+.|.....
T Consensus 76 ~~~~~~~l~~--~~-~~~lviDe~~~l~~~~~l~~l~~l~~ 113 (131)
T PF13401_consen 76 RSLLIDALDR--RR-VVLLVIDEADHLFSDEFLEFLRSLLN 113 (131)
T ss_dssp HHHHHHHHHH--CT-EEEEEEETTHHHHTHHHHHHHHHHTC
T ss_pred HHHHHHHHHh--cC-CeEEEEeChHhcCCHHHHHHHHHHHh
Confidence 4666666662 11 14689998622 3444555544444
No 206
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.59 E-value=0.0032 Score=66.24 Aligned_cols=40 Identities=30% Similarity=0.495 Sum_probs=34.0
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCe--eeehhhHHh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWT--QISLGKLLR 262 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~--~is~gdLlr 262 (520)
.+.|..+.|.||||+|||.+|+.|+++. |+. ++|.++|+.
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~el-g~~~i~vsa~eL~s 186 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKM-GIEPIVMSAGELES 186 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHc-CCCeEEEEHHHhhc
Confidence 4567888999999999999999999996 775 567778887
No 207
>PRK15453 phosphoribulokinase; Provisional
Probab=96.56 E-value=0.0037 Score=63.60 Aligned_cols=40 Identities=13% Similarity=0.183 Sum_probs=30.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCC----CCeeeehhhHHh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYP----NWTQISLGKLLR 262 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~----g~~~is~gdLlr 262 (520)
.++++|.|.|++||||||+|+.|++.+. +...++.++..+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 5678999999999999999999998651 134566655543
No 208
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.51 E-value=0.0018 Score=60.14 Aligned_cols=32 Identities=16% Similarity=0.436 Sum_probs=22.8
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR 262 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr 262 (520)
+|+|.|+|||||||+++.|++. |+..+ .+..|
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~--g~~~v--~E~ar 32 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR--GYPVV--PEYAR 32 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH--T-EEE----TTH
T ss_pred CEEEECCCCCCHHHHHHHHHHc--CCeEE--eecHH
Confidence 5999999999999999999986 88876 55555
No 209
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.51 E-value=0.0019 Score=60.20 Aligned_cols=38 Identities=16% Similarity=0.434 Sum_probs=29.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR 262 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr 262 (520)
.+.+|+|.|+||+||||+|.+|++++ .-.-+.+|-++.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L-~~~g~kvgGf~t 41 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKL-REKGYKVGGFIT 41 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHH-HhcCceeeeEEe
Confidence 46789999999999999999999875 444355555555
No 210
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=96.51 E-value=0.031 Score=55.75 Aligned_cols=41 Identities=17% Similarity=0.323 Sum_probs=34.7
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRY 263 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~ 263 (520)
...|.+|++=|++|.||||+|.-||.++ |+.++=..|.+|+
T Consensus 86 ~~~p~IILIGGasGVGkStIA~ElA~rL-gI~~visTD~IRE 126 (299)
T COG2074 86 MKRPLIILIGGASGVGKSTIAGELARRL-GIRSVISTDSIRE 126 (299)
T ss_pred cCCCeEEEecCCCCCChhHHHHHHHHHc-CCceeecchHHHH
Confidence 3457888888899999999999999997 9999866677773
No 211
>KOG3308|consensus
Probab=96.47 E-value=0.0068 Score=58.36 Aligned_cols=39 Identities=18% Similarity=0.364 Sum_probs=35.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR 262 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr 262 (520)
+..+|-|-|...|||||+|+.|.+.|+|+..|+-+|.++
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyK 41 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYK 41 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccC
Confidence 346788889999999999999999999999999999987
No 212
>PRK05439 pantothenate kinase; Provisional
Probab=96.46 E-value=0.0031 Score=65.18 Aligned_cols=41 Identities=12% Similarity=0.216 Sum_probs=33.3
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCC------CCeeeehhhHHh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYP------NWTQISLGKLLR 262 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~------g~~~is~gdLlr 262 (520)
...|.+|.|.|+|||||||+|+.|++.+. ....|++++.+.
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~ 129 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLY 129 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccccc
Confidence 45688999999999999999999988541 246788888876
No 213
>PLN02840 tRNA dimethylallyltransferase
Probab=96.42 E-value=0.003 Score=67.63 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=31.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGK 259 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gd 259 (520)
.+.++|+|.||+||||||+|..|++++ +...||++.
T Consensus 19 ~~~~vi~I~GptgsGKTtla~~La~~~-~~~iis~Ds 54 (421)
T PLN02840 19 KKEKVIVISGPTGAGKSRLALELAKRL-NGEIISADS 54 (421)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHC-CCCeEeccc
Confidence 445689999999999999999999998 888888875
No 214
>KOG0738|consensus
Probab=96.41 E-value=0.018 Score=60.48 Aligned_cols=129 Identities=20% Similarity=0.251 Sum_probs=75.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCCCeee--ehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhc
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQI--SLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKK 303 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~i--s~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~ 303 (520)
+=|+++||||+|||.+|+.++.+. |-..+ |...|..+ - .|+ .+-++.+|.+ |.
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc-~tTFFNVSsstltSK---w----------------RGe---SEKlvRlLFe-mA- 300 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATEC-GTTFFNVSSSTLTSK---W----------------RGE---SEKLVRLLFE-MA- 300 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhh-cCeEEEechhhhhhh---h----------------ccc---hHHHHHHHHH-HH-
Confidence 459999999999999999999987 76554 55455441 1 122 1222223221 11
Q ss_pred cccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecC-ChhhhhccCCCCCHHHHHHHHHHHHHHhHHHHHHhhhCCC
Q psy11031 304 TKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDC-SKLVLHKGQIDNSVSAFRRRLELFRERTLPMLRAMDVETR 382 (520)
Q Consensus 304 ~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~-~~~~~~r~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~ 382 (520)
-...|.+||||= +..+..|++..+ -|+.++--.++.-+...+-..+.....
T Consensus 301 ---------------------------RfyAPStIFiDEIDslcs~RG~s~E-HEaSRRvKsELLvQmDG~~~t~e~~k~ 352 (491)
T KOG0738|consen 301 ---------------------------RFYAPSTIFIDEIDSLCSQRGGSSE-HEASRRVKSELLVQMDGVQGTLENSKV 352 (491)
T ss_pred ---------------------------HHhCCceeehhhHHHHHhcCCCccc-hhHHHHHHHHHHHHhhcccccccccee
Confidence 111355777763 333333444322 333333335666666676666655445
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHH
Q psy11031 383 LTIVDGDTQLPQVREEFERVLKKII 407 (520)
Q Consensus 383 l~~IDa~~~~e~V~~~I~~~I~~~i 407 (520)
+.++-|+.=|+++=+.+...|+.+|
T Consensus 353 VmVLAATN~PWdiDEAlrRRlEKRI 377 (491)
T KOG0738|consen 353 VMVLAATNFPWDIDEALRRRLEKRI 377 (491)
T ss_pred EEEEeccCCCcchHHHHHHHHhhhe
Confidence 6677788888877777776666544
No 215
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=96.38 E-value=0.0094 Score=67.95 Aligned_cols=32 Identities=25% Similarity=0.619 Sum_probs=26.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeee
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQIS 256 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is 256 (520)
....|+++|.||+||||+|++|++.+ +|..++
T Consensus 214 ~~~~~~~vglp~~GKStia~~L~~~l-~~~~~~ 245 (664)
T PTZ00322 214 GSLIVIMVGLPGRGKTYVARQIQRYF-QWNGLQ 245 (664)
T ss_pred cceeEEecccCCCChhHHHHHHHHHH-HhcCCC
Confidence 35689999999999999999999875 655443
No 216
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.35 E-value=0.0029 Score=60.67 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhHHHHHHHhhC
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
+|.|.|++||||||+|+.|++.+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L 23 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQIL 23 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 217
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=96.33 E-value=0.0042 Score=61.03 Aligned_cols=35 Identities=11% Similarity=0.212 Sum_probs=30.6
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCee-eehhhHHhh
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQ-ISLGKLLRY 263 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~-is~gdLlr~ 263 (520)
+|.|.|.|||||||.|+.+.++ |..+ +++++-+|+
T Consensus 2 iI~i~G~~gsGKstva~~~~~~--g~~~~~~~~d~ik~ 37 (227)
T PHA02575 2 LIAISGKKRSGKDTVADFIIEN--YNAVKYQLADPIKE 37 (227)
T ss_pred EEEEeCCCCCCHHHHHHHHHhc--CCcEEEehhHHHHH
Confidence 6999999999999999988765 5666 999999993
No 218
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=96.29 E-value=0.0033 Score=64.26 Aligned_cols=32 Identities=22% Similarity=0.405 Sum_probs=29.6
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhh
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGK 259 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gd 259 (520)
+|+|+||+|||||++|..|++.+ +...||++.
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~-~~~iis~Ds 32 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKL-NAEIISVDS 32 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhC-CCcEEEech
Confidence 38999999999999999999998 999999986
No 219
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=96.27 E-value=0.028 Score=54.90 Aligned_cols=142 Identities=10% Similarity=0.026 Sum_probs=82.9
Q ss_pred cccCcccCcHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHh---c---CC--CCCcEEEeCCCCCHHhHH--------H
Q psy11031 11 LLDFPSHRNPLKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMK---M---SP--AAKAFLISGYPRNMRDVV--------E 74 (520)
Q Consensus 11 ~~~~~~h~s~G~~l~~~i~~G~~~g~lVPdelv~~ll~~~l~---~---~~--~~~G~ILDGFPRt~~QA~--------~ 74 (520)
+...|..+.+|..+++++.++. ..+=|-....=...+|.. + +. ...-+|.|-|=-+.-=.+ .
T Consensus 36 ~trEP~~~~ige~iR~~ll~~~--~~~~~~~e~lLfaadR~~h~~~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~ 113 (208)
T COG0125 36 LTREPGGTPIGEKIRELLLNGE--EKLSPKAEALLFAADRAQHLEEVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLD 113 (208)
T ss_pred EEeCCCCChHHHHHHHHHcCCc--cCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEECCcccHHHHhhhhccCCCHH
Confidence 4557888999999999998873 112232222212222221 0 11 134457776653322111 1
Q ss_pred HHH----h---cCCcCEEEEEEcCHHHHHHHhh-hCccCCccchHHHHHHHHHHHhccc----hHHHHhhhCCcEEEEeC
Q psy11031 75 YSD----K---IKTINGVILIAWRQSLLERQID-YGAKLGHVILSLARMELANFYQNVT----PVTDFFDQRGMLIAVNG 142 (520)
Q Consensus 75 ~~~----~---~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~~t~----pvi~~Y~~~~~l~~Ida 142 (520)
|.. . +..||++|+|++|-++..+|+. ++....|.+.+. ..|++.+. .+.+.+.+ .+++|||
T Consensus 114 ~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~~~r~E~~~-----~~f~~kvr~~Y~~la~~~~~--r~~vIda 186 (208)
T COG0125 114 WVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGELRDRFEKED-----DEFLEKVREGYLELAAKFPE--RIIVIDA 186 (208)
T ss_pred HHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCccchhhhHH-----HHHHHHHHHHHHHHHhhCCC--eEEEEEC
Confidence 111 1 2379999999999999999995 433223333221 12222222 23333433 4999999
Q ss_pred CCChHHHHHHHHHHHHHHh
Q psy11031 143 ERNPVEVYADFRTAVLKIL 161 (520)
Q Consensus 143 ~~~~eeV~~~i~~~l~~~~ 161 (520)
++++++|..+|...|...+
T Consensus 187 ~~~~e~v~~~i~~~l~~~l 205 (208)
T COG0125 187 SRPLEEVHEEILKILKERL 205 (208)
T ss_pred CCCHHHHHHHHHHHHHHhh
Confidence 9999999999999998766
No 220
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.27 E-value=0.0033 Score=56.48 Aligned_cols=27 Identities=26% Similarity=0.463 Sum_probs=24.0
Q ss_pred EEEEcCCCCChhHHHHHHHhhCCCCeee
Q psy11031 228 VWVVGGPGSSKSEMCQKVLQDYPNWTQI 255 (520)
Q Consensus 228 I~vlG~PGSGKsT~a~~La~k~~g~~~i 255 (520)
|+|.|+||+|||++++.+++.+ +...+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~-~~~~~ 28 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL-GRPVI 28 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH-TCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh-hcceE
Confidence 7899999999999999999987 76654
No 221
>PRK06761 hypothetical protein; Provisional
Probab=96.24 E-value=0.0037 Score=63.72 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=24.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCe
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWT 253 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~ 253 (520)
.++|+|.|+|||||||+++.|++++ +..
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L-~~~ 30 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDIL-SQN 30 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc-CcC
Confidence 4689999999999999999999986 643
No 222
>KOG0744|consensus
Probab=96.24 E-value=0.0032 Score=64.56 Aligned_cols=25 Identities=24% Similarity=0.615 Sum_probs=23.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
-..|++.||||.|||++|+.||+++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkL 201 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKL 201 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhh
Confidence 4579999999999999999999986
No 223
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.23 E-value=0.0039 Score=66.64 Aligned_cols=35 Identities=23% Similarity=0.361 Sum_probs=31.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGK 259 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gd 259 (520)
.|..|+|+||||||||++|+.|++.+ +++++.++.
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l-~~~fi~vda 80 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLA-NAPFIKVEA 80 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh-CCeEEEeec
Confidence 45789999999999999999999997 998888763
No 224
>PRK08118 topology modulation protein; Reviewed
Probab=96.17 E-value=0.027 Score=52.84 Aligned_cols=71 Identities=14% Similarity=0.204 Sum_probs=49.9
Q ss_pred ccCcccCcHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeC-CCCCHHhHHHHHHhcCCcCEEEEEEc
Q psy11031 12 LDFPSHRNPLKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISG-YPRNMRDVVEYSDKIKTINGVILIAW 90 (520)
Q Consensus 12 ~~~~~h~s~G~~l~~~i~~G~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDG-FPRt~~QA~~~~~~~~~pd~VI~L~~ 90 (520)
++++ |++++..+.. ..+..++++.+..++.+.++. .+||||| |+++.+.. + ..+|.||+|++
T Consensus 25 l~~~-~~~lD~l~~~------~~w~~~~~~~~~~~~~~~~~~----~~wVidG~~~~~~~~~--l----~~~d~vi~Ld~ 87 (167)
T PRK08118 25 LNIP-VHHLDALFWK------PNWEGVPKEEQITVQNELVKE----DEWIIDGNYGGTMDIR--L----NAADTIIFLDI 87 (167)
T ss_pred hCCC-ceecchhhcc------cCCcCCCHHHHHHHHHHHhcC----CCEEEeCCcchHHHHH--H----HhCCEEEEEeC
Confidence 4455 5666655431 123478998888887776643 5799999 77777544 2 25899999999
Q ss_pred CHHHHHHHh
Q psy11031 91 RQSLLERQI 99 (520)
Q Consensus 91 pd~~l~~Rl 99 (520)
|..++..|+
T Consensus 88 p~~~~~~R~ 96 (167)
T PRK08118 88 PRTICLYRA 96 (167)
T ss_pred CHHHHHHHH
Confidence 999887776
No 225
>KOG0739|consensus
Probab=96.03 E-value=0.069 Score=54.55 Aligned_cols=124 Identities=19% Similarity=0.227 Sum_probs=69.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCCCe--eeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhc
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPNWT--QISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKK 303 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~--~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~ 303 (520)
.=|++.||||.|||.+|+.+|..- +-. .+|..||+.+|. |+ .+.+|.+|++.+-+
T Consensus 167 rgiLLyGPPGTGKSYLAKAVATEA-nSTFFSvSSSDLvSKWm-------------------GE--SEkLVknLFemARe- 223 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVATEA-NSTFFSVSSSDLVSKWM-------------------GE--SEKLVKNLFEMARE- 223 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHhhc-CCceEEeehHHHHHHHh-------------------cc--HHHHHHHHHHHHHh-
Confidence 449999999999999999999874 544 456668877321 11 12334444332222
Q ss_pred cccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhccCCCCCHHHHHHHHHHHHHHhHHHHHHhhhCCCE
Q psy11031 304 TKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHKGQIDNSVSAFRRRLELFRERTLPMLRAMDVETRL 383 (520)
Q Consensus 304 ~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l 383 (520)
..+.+||+|-=+.+.+ .|.+...++.++--.+|.-+++.+-. +..-+
T Consensus 224 -----------------------------~kPSIIFiDEiDslcg-~r~enEseasRRIKTEfLVQMqGVG~---d~~gv 270 (439)
T KOG0739|consen 224 -----------------------------NKPSIIFIDEIDSLCG-SRSENESEASRRIKTEFLVQMQGVGN---DNDGV 270 (439)
T ss_pred -----------------------------cCCcEEEeehhhhhcc-CCCCCchHHHHHHHHHHHHhhhcccc---CCCce
Confidence 2355777764333333 33444344444333556666555432 22235
Q ss_pred EEEECCCCHHHHHHHHHHHHHH
Q psy11031 384 TIVDGDTQLPQVREEFERVLKK 405 (520)
Q Consensus 384 ~~IDa~~~~e~V~~~I~~~I~~ 405 (520)
+++-|..-|+.+=..|.+.+..
T Consensus 271 LVLgATNiPw~LDsAIRRRFek 292 (439)
T KOG0739|consen 271 LVLGATNIPWVLDSAIRRRFEK 292 (439)
T ss_pred EEEecCCCchhHHHHHHHHhhc
Confidence 6677887777655555554444
No 226
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.01 E-value=0.032 Score=52.52 Aligned_cols=139 Identities=12% Similarity=0.017 Sum_probs=75.5
Q ss_pred CcccCcHHHHHHHHHHccCCCCCCCCHHHHHHH-------HHHHHhc-CCCCCcEEEeCCCCCH---------------H
Q psy11031 14 FPSHRNPLKMFNLFVSEEVKDFSFLSSKTVTEV-------LMLEMKM-SPAAKAFLISGYPRNM---------------R 70 (520)
Q Consensus 14 ~~~h~s~G~~l~~~i~~G~~~g~lVPdelv~~l-------l~~~l~~-~~~~~G~ILDGFPRt~---------------~ 70 (520)
.|.....|..++.++..+. ...+-|.....-. +.+.+.. ......+|+|-|+-+- .
T Consensus 36 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~ 114 (200)
T cd01672 36 EPGGTPIGEAIRELLLDPE-DEKMDPRAELLLFAADRAQHVEEVIKPALARGKIVLSDRFVDSSLAYQGAGRGLGEALIE 114 (200)
T ss_pred CCCCCchHHHHHHHHhccC-ccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCcchHHHhCccccCCCHHHHH
Confidence 3444456888888877653 1223333221111 1111111 1235678888555221 1
Q ss_pred hHHHHHHhcCCcCEEEEEEcCHHHHHHHhh-hCccCCc-cchHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHH
Q psy11031 71 DVVEYSDKIKTINGVILIAWRQSLLERQID-YGAKLGH-VILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVE 148 (520)
Q Consensus 71 QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r-~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~ee 148 (520)
+...+......|+.+|+|++|.+++.+|+. |+..... .......+++..+.+. +...|. ..++.||++.++++
T Consensus 115 ~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~y~~---~~~~~~--~~~~~id~~~~~e~ 189 (200)
T cd01672 115 ALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDDRDEQEGLEFHERVREGYLE---LAAQEP--ERIIVIDASQPLEE 189 (200)
T ss_pred HHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHHH---HHHhCC--CeEEEEeCCCCHHH
Confidence 221222233479999999999999999994 4432111 1112233333333222 222221 34789999999999
Q ss_pred HHHHHHHHHH
Q psy11031 149 VYADFRTAVL 158 (520)
Q Consensus 149 V~~~i~~~l~ 158 (520)
|+++|...|.
T Consensus 190 i~~~i~~~i~ 199 (200)
T cd01672 190 VLAEILKAIL 199 (200)
T ss_pred HHHHHHHHHh
Confidence 9999998774
No 227
>CHL00181 cbbX CbbX; Provisional
Probab=95.99 E-value=0.016 Score=59.35 Aligned_cols=39 Identities=18% Similarity=0.266 Sum_probs=28.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCC--C------CeeeehhhHHh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYP--N------WTQISLGKLLR 262 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~--g------~~~is~gdLlr 262 (520)
.+..+++.|+||+||||+|+.+++.+. | +..++..+++.
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~ 104 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVG 104 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHH
Confidence 355699999999999999999987531 1 34556666654
No 228
>KOG0736|consensus
Probab=95.99 E-value=0.025 Score=63.86 Aligned_cols=95 Identities=20% Similarity=0.282 Sum_probs=60.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehh--hHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhc
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLG--KLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKK 303 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~g--dLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~ 303 (520)
-=|++.||||+|||.+|+.+|.++ .+..+|+. +||. .. +...+ +-+.+
T Consensus 706 SGILLYGPPGTGKTLlAKAVATEc-sL~FlSVKGPELLN---MY--------------VGqSE----~NVR~-------- 755 (953)
T KOG0736|consen 706 SGILLYGPPGTGKTLLAKAVATEC-SLNFLSVKGPELLN---MY--------------VGQSE----ENVRE-------- 755 (953)
T ss_pred ceeEEECCCCCchHHHHHHHHhhc-eeeEEeecCHHHHH---HH--------------hcchH----HHHHH--------
Confidence 349999999999999999999998 99999883 4443 11 11111 11222
Q ss_pred cccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCCh-hhhhccCCCCCHHHHHHHHHHHHHHhHH
Q psy11031 304 TKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSK-LVLHKGQIDNSVSAFRRRLELFRERTLP 372 (520)
Q Consensus 304 ~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~-~~~~r~R~dD~~e~~~~Rl~~f~~~~~~ 372 (520)
.|+++-...|+|||+|==+ ..-.|+|..|+-..+.+-..+.......
T Consensus 756 ----------------------VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDg 803 (953)
T KOG0736|consen 756 ----------------------VFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDG 803 (953)
T ss_pred ----------------------HHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhc
Confidence 2444444568899988433 3346788888766666555544444333
No 229
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.95 E-value=0.0049 Score=60.59 Aligned_cols=36 Identities=17% Similarity=0.176 Sum_probs=28.3
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCC------CCeeeehhhHHh
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYP------NWTQISLGKLLR 262 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~------g~~~is~gdLlr 262 (520)
+|.|.|++||||||+|+.|+..+. ....|++++...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~ 42 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLY 42 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccC
Confidence 377999999999999999998751 245677777754
No 230
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.93 E-value=0.0083 Score=59.07 Aligned_cols=31 Identities=13% Similarity=0.173 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeee
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI 255 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i 255 (520)
...-+++.||||+||||+|..||+.. |....
T Consensus 49 ~l~h~lf~GPPG~GKTTLA~IIA~e~-~~~~~ 79 (233)
T PF05496_consen 49 ALDHMLFYGPPGLGKTTLARIIANEL-GVNFK 79 (233)
T ss_dssp ---EEEEESSTTSSHHHHHHHHHHHC-T--EE
T ss_pred CcceEEEECCCccchhHHHHHHHhcc-CCCeE
Confidence 45679999999999999999999997 66543
No 231
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.93 E-value=0.063 Score=50.11 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k 248 (520)
++++.|+|||||||++..++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999988865
No 232
>PLN02318 phosphoribulokinase/uridine kinase
Probab=95.90 E-value=0.0069 Score=67.27 Aligned_cols=58 Identities=21% Similarity=0.239 Sum_probs=41.2
Q ss_pred CCCCCCcccCccccc-cccCCCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhH
Q psy11031 203 FTRPNGVVSEPYRKI-KSVERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKL 260 (520)
Q Consensus 203 ~~~~~~~~~~~~~~~-~~~~~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdL 260 (520)
...++||++.-+... .......+.+|.|.|++||||||+|+.|+..+++...|++++.
T Consensus 42 ~sfd~g~~~~ira~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy 100 (656)
T PLN02318 42 LSFEKGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNY 100 (656)
T ss_pred cccccchhhhhHHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcce
Confidence 345667766544321 1112345789999999999999999999998756678888765
No 233
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.89 E-value=0.0063 Score=65.15 Aligned_cols=35 Identities=23% Similarity=0.361 Sum_probs=30.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGK 259 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gd 259 (520)
.|..|+++|||||||||+|+.|++.+ ++.++.++.
T Consensus 49 ~~~~ILliGp~G~GKT~LAr~LAk~l-~~~fi~vD~ 83 (443)
T PRK05201 49 TPKNILMIGPTGVGKTEIARRLAKLA-NAPFIKVEA 83 (443)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh-CChheeecc
Confidence 35789999999999999999999987 888877753
No 234
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.86 E-value=0.0064 Score=63.86 Aligned_cols=25 Identities=16% Similarity=0.396 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
.+.++|.|||||||||+|+.|++.+
T Consensus 78 r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 78 KQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999999886
No 235
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.82 E-value=0.0075 Score=61.82 Aligned_cols=41 Identities=15% Similarity=0.211 Sum_probs=30.1
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCC------CCeeeehhhHHh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYP------NWTQISLGKLLR 262 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~------g~~~is~gdLlr 262 (520)
...|.+|.|.|++||||||+|+.|+..+. ....++++....
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~ 105 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLH 105 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccc
Confidence 35678999999999999999988765431 244567766554
No 236
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.77 E-value=0.018 Score=57.97 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=24.4
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCeee
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQI 255 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~i 255 (520)
.|++.|+||+|||++|+.|++.+ |...+
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~l-g~~~~ 50 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKR-DRPVM 50 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh-CCCEE
Confidence 47899999999999999999876 77655
No 237
>PRK07933 thymidylate kinase; Validated
Probab=95.74 E-value=0.029 Score=54.85 Aligned_cols=137 Identities=12% Similarity=0.062 Sum_probs=72.9
Q ss_pred CcHHHHHHHHHHccCCCCCCCCHHHHHHHHH--H------HHhc-CCCCCcEEEeCCCCCH--HhH-----------HHH
Q psy11031 18 RNPLKMFNLFVSEEVKDFSFLSSKTVTEVLM--L------EMKM-SPAAKAFLISGYPRNM--RDV-----------VEY 75 (520)
Q Consensus 18 ~s~G~~l~~~i~~G~~~g~lVPdelv~~ll~--~------~l~~-~~~~~G~ILDGFPRt~--~QA-----------~~~ 75 (520)
+..|+.++.++.... +.++.+.....++. + .|.. .....-+|.|.|--+- -|+ ..|
T Consensus 42 ~~~g~~ir~~l~~~~--~~~~~~~~~~~llf~a~R~~~~~~I~p~l~~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~ 119 (213)
T PRK07933 42 SVHADLAAEALHGRH--GDLADSVYAMATLFALDRAGARDELAGLLAAHDVVILDRYVASNAAYSAARLHQDADGEAVAW 119 (213)
T ss_pred CCccHHHHHHHcCCC--CcccCCHHHHHHHHhhhhhhhHHHHHHHHhCCCEEEECCccchhHHHhccCCCcccchHHHHH
Confidence 557888988887432 11322222223321 1 1110 0123457889888664 122 122
Q ss_pred HHh-------cCCcCEEEEEEcCHHHHHHHhh-hCccCCccchHHHHHHHHHHHhccchHHHHhhh---CCcEEEEeCCC
Q psy11031 76 SDK-------IKTINGVILIAWRQSLLERQID-YGAKLGHVILSLARMELANFYQNVTPVTDFFDQ---RGMLIAVNGER 144 (520)
Q Consensus 76 ~~~-------~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~---~~~l~~Ida~~ 144 (520)
... ...||++|+|++|-+++.+|+. |+........+.+.+ -..|.+.+......+.+ ...++.|||++
T Consensus 120 ~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~~~~~~~~~d~~E~-~~~f~~~v~~~Y~~~~~~~~~~~~~~ida~~ 198 (213)
T PRK07933 120 VAELEFGRLGLPVPDLQVLLDVPVELAAERARRRAAQDADRARDAYER-DDGLQQRTGAVYAELAAQGWGGPWLVVDPDV 198 (213)
T ss_pred HHHHHHhhcCCCCCCEEEEecCCHHHHHHHHHhhccccCCcccccccc-cHHHHHHHHHHHHHHHHhcCCCCeEEeCCCC
Confidence 221 1269999999999999999994 542110000000111 11333333222221111 23588899999
Q ss_pred ChHHHHHHHHHHH
Q psy11031 145 NPVEVYADFRTAV 157 (520)
Q Consensus 145 ~~eeV~~~i~~~l 157 (520)
++++|+++|.+.|
T Consensus 199 ~~e~v~~~i~~~~ 211 (213)
T PRK07933 199 DPAALAARLAAAL 211 (213)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998876
No 238
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.72 E-value=0.0089 Score=51.70 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHHhhC
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
+|+|+|++||||||+.++|+...
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEECcCCCCHHHHHHHHhcCC
Confidence 59999999999999999999865
No 239
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.71 E-value=0.0091 Score=52.28 Aligned_cols=25 Identities=20% Similarity=0.541 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
...++|.|+||+|||++++.+++.+
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999864
No 240
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=95.70 E-value=0.02 Score=56.42 Aligned_cols=35 Identities=17% Similarity=0.301 Sum_probs=27.1
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGK 259 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gd 259 (520)
...|..++|.|+||+||||+|+.|+.+ ..+++.+.
T Consensus 9 ~~~~~~~liyG~~G~GKtt~a~~~~~~---~~~~~~d~ 43 (220)
T TIGR01618 9 KRIPNMYLIYGKPGTGKTSTIKYLPGK---TLVLSFDM 43 (220)
T ss_pred CCCCcEEEEECCCCCCHHHHHHhcCCC---CEEEeccc
Confidence 345788999999999999999988643 45666643
No 241
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.67 E-value=0.0077 Score=58.21 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=23.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
|.+|+++||+|+||||.+.+||.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH
Confidence 6889999999999999999999765
No 242
>PF13245 AAA_19: Part of AAA domain
Probab=95.60 E-value=0.011 Score=48.21 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=16.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
...++|.||||||||+.+..++..
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 455777999999999554444433
No 243
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=95.53 E-value=0.064 Score=50.68 Aligned_cols=127 Identities=12% Similarity=0.078 Sum_probs=70.0
Q ss_pred cccCcHHHHHHHHHHccCCCCCCCCHHHHHH------------HHHHHHhcCCCCCcEEEeCCC----------C--CHH
Q psy11031 15 PSHRNPLKMFNLFVSEEVKDFSFLSSKTVTE------------VLMLEMKMSPAAKAFLISGYP----------R--NMR 70 (520)
Q Consensus 15 ~~h~s~G~~l~~~i~~G~~~g~lVPdelv~~------------ll~~~l~~~~~~~G~ILDGFP----------R--t~~ 70 (520)
|....+|..++.++.++. -.......- .+...++ ...-+|+|-|- . ...
T Consensus 33 ~~~~~~g~~ir~~l~~~~----~~~~~~~~~l~~a~r~~~~~~~I~~~l~---~g~~VI~DRy~~S~lay~~~~~~~~~~ 105 (186)
T PF02223_consen 33 PGSTPIGELIRELLRSES----ELSPEAEALLFAADRAWHLARVIRPALK---RGKIVICDRYIYSTLAYQGAKGELDID 105 (186)
T ss_dssp STSSHHHHHHHHHHHTSS----TCGHHHHHHHHHHHHHHHHHHTHHHHHH---TTSEEEEESEHHHHHHHHTTTTSSTHH
T ss_pred CCCChHHHHHHHHHhccc----CCCHHHHHHHHHHHHHHHHHHHHHHHHc---CCCEEEEechhHHHHHhCccccCCcch
Confidence 346678999999999333 222211111 1111221 23556777552 2 123
Q ss_pred hHHHHHHhcC--CcCEEEEEEcCHHHHHHHhh-hCccCCccchHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChH
Q psy11031 71 DVVEYSDKIK--TINGVILIAWRQSLLERQID-YGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPV 147 (520)
Q Consensus 71 QA~~~~~~~~--~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~e 147 (520)
....+..... .||++|+|+++.++..+|+. ++. ..+...+. ...+..+++.-..+.+ ..+.++.|||+.+++
T Consensus 106 ~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~-~~~~~~~~-~~~~~~~~~~y~~l~~---~~~~~~iid~~~~~e 180 (186)
T PF02223_consen 106 WIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKRGE-KDDEEEED-LEYLRRVREAYLELAK---DPNNWVIIDASRSIE 180 (186)
T ss_dssp HHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHTSS-TTTTTTHH-HHHHHHHHHHHHHHHH---TTTTEEEEETTS-HH
T ss_pred hhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcCCc-cchHHHHH-HHHHHHHHHHHHHHHc---CCCCEEEEECCCCHH
Confidence 3333444444 99999999999999999994 443 22322211 1122222222222333 345699999999999
Q ss_pred HHHHHH
Q psy11031 148 EVYADF 153 (520)
Q Consensus 148 eV~~~i 153 (520)
+|.++|
T Consensus 181 ~v~~~I 186 (186)
T PF02223_consen 181 EVHEQI 186 (186)
T ss_dssp HHHHHH
T ss_pred HHHhhC
Confidence 999886
No 244
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.53 E-value=0.063 Score=58.17 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
..|.+|+++|++||||||.|.+|+..+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L 119 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYF 119 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 357899999999999999999998754
No 245
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=95.52 E-value=0.011 Score=62.96 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=30.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCC--eeeehhhHHh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNW--TQISLGKLLR 262 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~--~~is~gdLlr 262 (520)
..|+-|+|.||||+|||++|+.++... +. ..++..+++.
T Consensus 163 ~~p~gvLL~GppGtGKT~lAkaia~~~-~~~~i~v~~~~l~~ 203 (389)
T PRK03992 163 EPPKGVLLYGPPGTGKTLLAKAVAHET-NATFIRVVGSELVQ 203 (389)
T ss_pred CCCCceEEECCCCCChHHHHHHHHHHh-CCCEEEeehHHHhH
Confidence 446779999999999999999999975 54 4456666665
No 246
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.52 E-value=0.0098 Score=61.79 Aligned_cols=31 Identities=26% Similarity=0.383 Sum_probs=27.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeeee
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQIS 256 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is 256 (520)
...|+|.|+||+||||+++.|++.+ |+.++.
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l-~~~~~r 94 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARL-NWPCVR 94 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHH-CCCeEE
Confidence 3459999999999999999999997 887763
No 247
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=95.49 E-value=0.012 Score=61.24 Aligned_cols=31 Identities=26% Similarity=0.328 Sum_probs=27.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeee
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI 255 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i 255 (520)
...+|+|+|++||||||+++.|++.| |...+
T Consensus 161 ~~~~~~~~G~~~~gkstl~~~l~~~~-~~~~v 191 (325)
T TIGR01526 161 FVKTVAILGGESTGKSTLVNKLAAVF-NTTSA 191 (325)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhh-CCCEE
Confidence 35789999999999999999999987 87764
No 248
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.48 E-value=0.0091 Score=56.27 Aligned_cols=23 Identities=26% Similarity=0.690 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHHHHHhhC
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
+|+|.|+||+||||+++++.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 58999999999999999998875
No 249
>PF13173 AAA_14: AAA domain
Probab=95.47 E-value=0.015 Score=51.77 Aligned_cols=37 Identities=16% Similarity=0.260 Sum_probs=29.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCC---CCeeeehhhHH
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYP---NWTQISLGKLL 261 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~---g~~~is~gdLl 261 (520)
.++++|.|+.||||||+++.+++.+. .+.++++.+.-
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~ 41 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPR 41 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHH
Confidence 36799999999999999999998762 36666665443
No 250
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.44 E-value=0.0068 Score=60.35 Aligned_cols=20 Identities=30% Similarity=0.589 Sum_probs=17.8
Q ss_pred EEcCCCCChhHHHHHHHhhC
Q psy11031 230 VVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 230 vlG~PGSGKsT~a~~La~k~ 249 (520)
|+|||||||||.|+.+.+.+
T Consensus 1 ViGpaGSGKTT~~~~~~~~~ 20 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWL 20 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH
Confidence 68999999999999999875
No 251
>KOG0733|consensus
Probab=95.44 E-value=0.017 Score=63.74 Aligned_cols=37 Identities=19% Similarity=0.411 Sum_probs=31.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehh--hHHh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLG--KLLR 262 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~g--dLlr 262 (520)
|.=+++.||||||||.+|+.||..+ |++.+++. +++.
T Consensus 223 prGvLlHGPPGCGKT~lA~AiAgel-~vPf~~isApeivS 261 (802)
T KOG0733|consen 223 PRGVLLHGPPGCGKTSLANAIAGEL-GVPFLSISAPEIVS 261 (802)
T ss_pred CCceeeeCCCCccHHHHHHHHhhhc-CCceEeecchhhhc
Confidence 4458999999999999999999997 99988764 4444
No 252
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.43 E-value=0.013 Score=64.33 Aligned_cols=39 Identities=28% Similarity=0.461 Sum_probs=31.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeee--ehhhHHh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI--SLGKLLR 262 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i--s~gdLlr 262 (520)
..|+-|++.||||||||++|+.||..+ |++.+ +++.++.
T Consensus 257 ~~pkGILL~GPpGTGKTllAkaiA~e~-~~~~~~l~~~~l~~ 297 (489)
T CHL00195 257 PTPRGLLLVGIQGTGKSLTAKAIANDW-QLPLLRLDVGKLFG 297 (489)
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh-CCCEEEEEhHHhcc
Confidence 456779999999999999999999996 87655 4455544
No 253
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.41 E-value=0.19 Score=47.05 Aligned_cols=88 Identities=9% Similarity=0.016 Sum_probs=59.6
Q ss_pred CCcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHhhhCccCCccchHHHHHHHHHHHhccchHHHHhhhCCc
Q psy11031 57 AKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGM 136 (520)
Q Consensus 57 ~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl~rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~ 136 (520)
....|+||-.. -...+.... .-..+|+|+++.+++.+|+..+ +|.+++.+.+|+..+..... ...-
T Consensus 90 g~~vv~~g~~~---~~~~~~~~~-~~~~~i~l~~~~~~~~~Rl~~R---~~~~~~~~~~rl~~~~~~~~-------~~~~ 155 (179)
T TIGR02322 90 GDVVVVNGSRA---VLPEARQRY-PNLLVVNITASPDVLAQRLAAR---GRESREEIEERLARSARFAA-------APAD 155 (179)
T ss_pred CCEEEEECCHH---HHHHHHHHC-CCcEEEEEECCHHHHHHHHHHc---CCCCHHHHHHHHHHHhhccc-------ccCC
Confidence 35689999732 122222222 3347899999999999999422 35567778888875543322 2233
Q ss_pred EEEEeCCCChHHHHHHHHHHHH
Q psy11031 137 LIAVNGERNPVEVYADFRTAVL 158 (520)
Q Consensus 137 l~~Ida~~~~eeV~~~i~~~l~ 158 (520)
++.|+.+++++++..+|.+.+.
T Consensus 156 ~~vi~~~~~~ee~~~~i~~~l~ 177 (179)
T TIGR02322 156 VTTIDNSGSLEVAGETLLRLLR 177 (179)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc
Confidence 6678999999999999998875
No 254
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.41 E-value=0.017 Score=52.51 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCe
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWT 253 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~ 253 (520)
...+|+|.|..||||||+++.+++.+ |+.
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~l-g~~ 49 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGL-GIQ 49 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc-CCC
Confidence 35689999999999999999999987 763
No 255
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.40 E-value=0.014 Score=55.40 Aligned_cols=27 Identities=11% Similarity=0.228 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
..++++.|+|++||||||++++|...+
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHH
Confidence 457799999999999999999998664
No 256
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=95.38 E-value=0.059 Score=51.14 Aligned_cols=116 Identities=15% Similarity=0.139 Sum_probs=76.0
Q ss_pred HHHHHHHHccCCCCCCCCHHHHHH--------HHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCH-
Q psy11031 22 KMFNLFVSEEVKDFSFLSSKTVTE--------VLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQ- 92 (520)
Q Consensus 22 ~~l~~~i~~G~~~g~lVPdelv~~--------ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd- 92 (520)
..+...+++|. +|+...... .|.+.++. .+.+|||+.|+.+.|+... ...| .||+|.+|+
T Consensus 57 ~ef~~~i~~g~----fve~~~~~g~~YGt~~~~i~~~~~~---~~~~ild~~~~~~~~l~~~---~~~~-~vIfi~~~s~ 125 (184)
T smart00072 57 EEFEDDIKSGL----FLEWGEYSGNYYGTSKETIRQVAEQ---GKHCLLDIDPQGVKQLRKA---QLYP-IVIFIAPPSS 125 (184)
T ss_pred HHHHHHHHcCC----eEEEEEEcCcCcccCHHHHHHHHHc---CCeEEEEECHHHHHHHHHh---CCCc-EEEEEeCcCH
Confidence 55666677665 766544333 45555542 5789999999999998553 1222 789998665
Q ss_pred HHHHHHhh-hCccCCccchHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHHHHH
Q psy11031 93 SLLERQID-YGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLK 159 (520)
Q Consensus 93 ~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l~~ 159 (520)
++|.+|+. |+. .+.+.+.+||....... ++|..- =..|+.+ +.++.+.+++++|+.
T Consensus 126 ~~l~~rl~~R~~----~~~~~i~~rl~~a~~~~----~~~~~f--d~~I~n~-~l~~~~~~l~~~i~~ 182 (184)
T smart00072 126 EELERRLRGRGT----ETAERIQKRLAAAQKEA----QEYHLF--DYVIVND-DLEDAYEELKEILEA 182 (184)
T ss_pred HHHHHHHHhcCC----CCHHHHHHHHHHHHHHH----hhhccC--CEEEECc-CHHHHHHHHHHHHHh
Confidence 56999994 532 24677899999765543 233111 2445555 788899999888864
No 257
>PLN02796 D-glycerate 3-kinase
Probab=95.37 E-value=0.015 Score=60.74 Aligned_cols=40 Identities=15% Similarity=0.264 Sum_probs=31.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCC----CCeeeehhhHHh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYP----NWTQISLGKLLR 262 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~----g~~~is~gdLlr 262 (520)
..|.+|.|.|++||||||+|+.|+..+. ....||++++.-
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYL 141 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYL 141 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCccc
Confidence 4578999999999999999999998752 145677777654
No 258
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=95.36 E-value=0.71 Score=46.45 Aligned_cols=143 Identities=14% Similarity=0.234 Sum_probs=76.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhccc
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTK 305 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~ 305 (520)
..|+|.|..|||||+-.+.|-. . |+..+ + .+|.+++-+++.-......
T Consensus 2 ~lvIVTGlSGAGKsvAl~~lED-l-Gyycv--D----------------------------NLPp~Llp~~~~~~~~~~~ 49 (286)
T COG1660 2 RLVIVTGLSGAGKSVALRVLED-L-GYYCV--D----------------------------NLPPQLLPKLADLMLTLES 49 (286)
T ss_pred cEEEEecCCCCcHHHHHHHHHh-c-Ceeee--c----------------------------CCCHHHHHHHHHHHhhccc
Confidence 3689999999999999987643 3 54433 2 3455556555542222101
Q ss_pred cCCCcEEEEe----CCCCCHHHHH-HHHhhcCCCCCEEEecCChhhhhc-----cCCC--CCHHHHHHHHHHHHHHhHHH
Q psy11031 306 YTEADGIVID----GFPREMSQLI-DFENKYQIHPPMILIDCSKLVLHK-----GQID--NSVSAFRRRLELFRERTLPM 373 (520)
Q Consensus 306 ~~~~~G~ILD----GFPrt~~Qae-~l~~~~~~p~~VI~Ld~~~~~~~r-----~R~d--D~~e~~~~Rl~~f~~~~~~l 373 (520)
...+-.+++| .|+.++.++. .+.........|+||+.+++.+-+ +|.. .....+..-+..=++...|+
T Consensus 50 ~~~kvAv~iDiRs~~~~~~l~~~l~~l~~~~~~~~~iLFLeA~~~~Lv~RY~etRR~HPL~~~~~l~~~I~~ERelL~pL 129 (286)
T COG1660 50 RITKVAVVIDVRSREFFGDLEEVLDELKDNGDIDPRVLFLEADDETLVRRYSETRRSHPLSEDGLLLEAIAKERELLAPL 129 (286)
T ss_pred CCceEEEEEecccchhHHHHHHHHHHHHhcCCCCceEEEEECchhHHHHHHhhhhhcCCCCccCcHHHHHHHHHHHHHHH
Confidence 1224468888 3555554433 233221123569999999986521 2211 11111222222223333444
Q ss_pred HHHhhhCCCEEEEECC-CCHHHHHHHHHHHHHH
Q psy11031 374 LRAMDVETRLTIVDGD-TQLPQVREEFERVLKK 405 (520)
Q Consensus 374 ~~~y~~~~~l~~IDa~-~~~e~V~~~I~~~I~~ 405 (520)
.+.-+ .+||.+ .++.++.+.|.+.+..
T Consensus 130 k~~A~-----~vIDTs~ls~~~Lr~~i~~~f~~ 157 (286)
T COG1660 130 REIAD-----LVIDTSELSVHELRERIRTRFLG 157 (286)
T ss_pred HHHhh-----hEeecccCCHHHHHHHHHHHHcc
Confidence 33221 357855 6788877777766654
No 259
>PRK09087 hypothetical protein; Validated
Probab=95.36 E-value=0.017 Score=57.11 Aligned_cols=37 Identities=19% Similarity=0.143 Sum_probs=31.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR 262 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr 262 (520)
.+.++|.|++|||||++++.+++.+ +..+++.+++..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~-~~~~i~~~~~~~ 80 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS-DALLIHPNEIGS 80 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc-CCEEecHHHcch
Confidence 3568999999999999999999887 888888865444
No 260
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.33 E-value=0.0096 Score=51.59 Aligned_cols=22 Identities=32% Similarity=0.836 Sum_probs=20.2
Q ss_pred EEEEcCCCCChhHHHHHHHhhC
Q psy11031 228 VWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 228 I~vlG~PGSGKsT~a~~La~k~ 249 (520)
|+|.|+||+|||++|+.|++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998765
No 261
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=95.29 E-value=0.018 Score=60.80 Aligned_cols=38 Identities=32% Similarity=0.423 Sum_probs=29.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeee--ehhhHHh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI--SLGKLLR 262 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i--s~gdLlr 262 (520)
.|+-++|.||||+|||++|+.+++.. +...+ +.+++..
T Consensus 155 ~p~gvLL~GppGtGKT~lakaia~~l-~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 155 PPKGVLLYGPPGTGKTLLAKAVAHET-NATFIRVVGSELVR 194 (364)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhC-CCCEEecchHHHHH
Confidence 46679999999999999999999986 65544 3334444
No 262
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.26 E-value=0.045 Score=55.92 Aligned_cols=37 Identities=19% Similarity=0.344 Sum_probs=26.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCC--------CCeeeehhhHHh
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYP--------NWTQISLGKLLR 262 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~--------g~~~is~gdLlr 262 (520)
.-+++.|+||+||||+|+.+++.+. .+..++..+++.
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~ 103 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVG 103 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhH
Confidence 3599999999999999987776431 134555556654
No 263
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=95.26 E-value=0.013 Score=53.85 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
++|+|+|+.||||||+++.|....
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 579999999999999999998754
No 264
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=95.24 E-value=0.02 Score=58.92 Aligned_cols=37 Identities=19% Similarity=0.297 Sum_probs=33.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHH
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLL 261 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLl 261 (520)
.++.|+|+||.+||||-+|-.||+++ |...||++.+.
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~-~~eIIs~DSmQ 38 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRL-GGEIISLDSMQ 38 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHc-CCcEEecchhh
Confidence 46789999999999999999999998 99999998553
No 265
>KOG0733|consensus
Probab=95.23 E-value=0.018 Score=63.51 Aligned_cols=39 Identities=28% Similarity=0.428 Sum_probs=32.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehh--hHHh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLG--KLLR 262 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~g--dLlr 262 (520)
..|-=|+++||||||||.+|+.+|.+- |+..||+. +||.
T Consensus 543 ~~PsGvLL~GPPGCGKTLlAKAVANEa-g~NFisVKGPELlN 583 (802)
T KOG0733|consen 543 DAPSGVLLCGPPGCGKTLLAKAVANEA-GANFISVKGPELLN 583 (802)
T ss_pred CCCCceEEeCCCCccHHHHHHHHhhhc-cCceEeecCHHHHH
Confidence 346679999999999999999999985 77777764 8887
No 266
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=95.20 E-value=0.019 Score=61.49 Aligned_cols=39 Identities=23% Similarity=0.405 Sum_probs=29.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeeh--hhHHh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISL--GKLLR 262 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~--gdLlr 262 (520)
..|+-|+|.||||||||++|+.++... +...+.+ .+++.
T Consensus 177 ~~pkgvLL~GppGTGKT~LAkalA~~l-~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 177 DPPRGVLLYGPPGTGKTMLAKAVAHHT-TATFIRVVGSEFVQ 217 (398)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhc-CCCEEEEehHHHHH
Confidence 346779999999999999999999986 6655443 34444
No 267
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=95.15 E-value=0.023 Score=58.52 Aligned_cols=37 Identities=14% Similarity=0.257 Sum_probs=31.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehh--hHHh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLG--KLLR 262 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~g--dLlr 262 (520)
.+++|+|+||.|||||.+|-.||++. | ..||++ +++|
T Consensus 3 ~~~ii~I~GpTasGKS~LAl~LA~~~-~-eIIsaDS~QvYr 41 (300)
T PRK14729 3 ENKIVFIFGPTAVGKSNILFHFPKGK-A-EIINVDSIQVYK 41 (300)
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC-C-cEEeccHHHHHC
Confidence 35689999999999999999999985 5 788887 4555
No 268
>KOG0651|consensus
Probab=95.15 E-value=0.033 Score=57.07 Aligned_cols=56 Identities=14% Similarity=0.173 Sum_probs=40.8
Q ss_pred CCCCCeEEEEEcCCCCChhHHHHHHHhhCCCCee--eehhhHHhhhhcccccCCcchHHHHhhhh
Q psy11031 221 ERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQ--ISLGKLLRYFANIEDDGEGLNSRIKSSVS 283 (520)
Q Consensus 221 ~~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~--is~gdLlr~~~~~~~~~t~~g~~i~~~l~ 283 (520)
.-..|+.+.+.||||.|||.||+.++... |+.. ++.+.|.. ..+ .+.+..|++.+.
T Consensus 162 gIk~Pkg~ll~GppGtGKTlla~~Vaa~m-g~nfl~v~ss~lv~---kyi---GEsaRlIRemf~ 219 (388)
T KOG0651|consen 162 GIKPPKGLLLYGPPGTGKTLLARAVAATM-GVNFLKVVSSALVD---KYI---GESARLIRDMFR 219 (388)
T ss_pred CCCCCceeEEeCCCCCchhHHHHHHHHhc-CCceEEeeHhhhhh---hhc---ccHHHHHHHHHH
Confidence 34567888999999999999999999987 6644 47777776 322 345566666543
No 269
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.11 E-value=0.36 Score=45.77 Aligned_cols=86 Identities=12% Similarity=0.071 Sum_probs=59.5
Q ss_pred CcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHhh-hCccCCccchHHHHHHHHHHHhccchHHHHhhhCCc
Q psy11031 58 KAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQID-YGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGM 136 (520)
Q Consensus 58 ~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~ 136 (520)
+..|+||- +... ..+.......-.||+|++|.+++.+|+. | +|.+++.+.+|+..+. +|.. .-
T Consensus 90 ~~VI~~G~-~~~~--~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R----~~~~~~~i~~rl~r~~--------~~~~-ad 153 (186)
T PRK10078 90 FDVLVNGS-RAHL--PQARARYQSALLPVCLQVSPEILRQRLENR----GRENASEINARLARAA--------RYQP-QD 153 (186)
T ss_pred CEEEEeCh-HHHH--HHHHHHcCCCEEEEEEeCCHHHHHHHHHHh----CCCCHHHHHHHHHHhh--------hhcc-CC
Confidence 45888887 2221 1223333455678999999999999994 4 3445667889986532 3432 33
Q ss_pred EEEEeCCCChHHHHHHHHHHHHH
Q psy11031 137 LIAVNGERNPVEVYADFRTAVLK 159 (520)
Q Consensus 137 l~~Ida~~~~eeV~~~i~~~l~~ 159 (520)
++.||.+++++++.++|.+++..
T Consensus 154 ~~vi~~~~s~ee~~~~i~~~l~~ 176 (186)
T PRK10078 154 CHTLNNDGSLRQSVDTLLTLLHL 176 (186)
T ss_pred EEEEeCCCCHHHHHHHHHHHHhh
Confidence 67889889999999999988864
No 270
>KOG0730|consensus
Probab=95.07 E-value=0.017 Score=64.16 Aligned_cols=39 Identities=21% Similarity=0.376 Sum_probs=32.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeeh--hhHHh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISL--GKLLR 262 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~--gdLlr 262 (520)
..|+-|++.|||||||||+|+.||..- ++..+++ .+|+.
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~-~~nFlsvkgpEL~s 506 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEA-GMNFLSVKGPELFS 506 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhh-cCCeeeccCHHHHH
Confidence 457789999999999999999999986 7777666 46666
No 271
>PRK09183 transposase/IS protein; Provisional
Probab=95.06 E-value=0.14 Score=51.72 Aligned_cols=38 Identities=13% Similarity=0.122 Sum_probs=26.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhC--CC--CeeeehhhHHh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDY--PN--WTQISLGKLLR 262 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~--~g--~~~is~gdLlr 262 (520)
...++|+||||+|||+++..|+... .| ..+++..+++.
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~ 143 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLL 143 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHH
Confidence 4568999999999999999985431 12 23445555553
No 272
>PRK10867 signal recognition particle protein; Provisional
Probab=95.03 E-value=0.14 Score=55.45 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
..|.+|+++|++||||||.|.+||..
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~ 123 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKY 123 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHH
Confidence 35789999999999999988888763
No 273
>PRK06620 hypothetical protein; Validated
Probab=94.96 E-value=0.025 Score=55.38 Aligned_cols=30 Identities=17% Similarity=0.088 Sum_probs=24.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCCCeeee
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQIS 256 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is 256 (520)
..+++.||||||||++++.+++.. +...++
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~-~~~~~~ 74 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS-NAYIIK 74 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc-CCEEcc
Confidence 569999999999999999988875 654444
No 274
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.95 E-value=0.021 Score=55.38 Aligned_cols=39 Identities=21% Similarity=0.248 Sum_probs=29.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhC----CCCeeeehhhHH
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDY----PNWTQISLGKLL 261 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~----~g~~~is~gdLl 261 (520)
..+..++|.|++|||||++|+.++... ..+.++++.++.
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 446779999999999999999998653 134556665554
No 275
>PRK12377 putative replication protein; Provisional
Probab=94.92 E-value=0.12 Score=51.79 Aligned_cols=37 Identities=11% Similarity=0.223 Sum_probs=27.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCC----CCeeeehhhHHh
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYP----NWTQISLGKLLR 262 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~----g~~~is~gdLlr 262 (520)
..++|.|+||+|||++|..|+..+. ....+++.+++.
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~ 142 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMS 142 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHH
Confidence 4589999999999999999887531 234566666666
No 276
>PRK06526 transposase; Provisional
Probab=94.90 E-value=0.06 Score=54.15 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
+..++|+||||+|||++|..|+..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHH
Confidence 457999999999999999988654
No 277
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.86 E-value=0.31 Score=47.20 Aligned_cols=89 Identities=11% Similarity=0.031 Sum_probs=61.5
Q ss_pred cEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcC--HHHHHHHhh-hCccCCccchHHHHHHHHHHHhccchHHHHhhhCC
Q psy11031 59 AFLISGYPRNMRDVVEYSDKIKTINGVILIAWR--QSLLERQID-YGAKLGHVILSLARMELANFYQNVTPVTDFFDQRG 135 (520)
Q Consensus 59 G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~p--d~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~ 135 (520)
-.|+|.= ..-+..+.+ ..||.+++|.+| .+++.+|+. |+. .+.+.+.+|+..+...+...-. .
T Consensus 105 ~vi~~~~---~~g~~~l~~--~~pd~~~if~~pps~e~l~~Rl~~R~~----~~~~~~~~Rl~~~~~e~~~~~~-----~ 170 (206)
T PRK14738 105 DVIVKVD---VQGAASIKR--LVPEAVFIFLAPPSMDELTRRLELRRT----ESPEELERRLATAPLELEQLPE-----F 170 (206)
T ss_pred cEEEEcC---HHHHHHHHH--hCCCeEEEEEeCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHHHHhcccC-----C
Confidence 3678763 333333332 358888878775 568899994 432 2456889999988776543221 1
Q ss_pred cEEEEeCCCChHHHHHHHHHHHHHHh
Q psy11031 136 MLIAVNGERNPVEVYADFRTAVLKIL 161 (520)
Q Consensus 136 ~l~~Ida~~~~eeV~~~i~~~l~~~~ 161 (520)
-++.||++.++++++++|.++|....
T Consensus 171 ~~~iId~~~~~e~v~~~i~~~l~~~~ 196 (206)
T PRK14738 171 DYVVVNPEDRLDEAVAQIMAIISAEK 196 (206)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 37889999999999999999998653
No 278
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=94.85 E-value=0.015 Score=60.65 Aligned_cols=113 Identities=17% Similarity=0.197 Sum_probs=64.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccc-cC-----CcchHHHHhh-----------hhcC
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIED-DG-----EGLNSRIKSS-----------VSAG 285 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~-~~-----t~~g~~i~~~-----------l~~G 285 (520)
...-+++++||.||||||+.+.|| |+.-++.|+++= .... +. -.++...+.+ +.-|
T Consensus 27 ~~Gef~vllGPSGcGKSTlLr~IA----GLe~~~~G~I~i---~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~ 99 (338)
T COG3839 27 EDGEFVVLLGPSGCGKSTLLRMIA----GLEEPTSGEILI---DGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFG 99 (338)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh----CCCCCCCceEEE---CCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhh
Confidence 445689999999999999999997 677777777654 1110 11 0111111111 1000
Q ss_pred ---CccchHHHHHHHHHHHhccccCCCcEEEEeCCCCCHH----HHHHHHhhcCCCCCEEEecCChhh
Q psy11031 286 ---DFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMS----QLIDFENKYQIHPPMILIDCSKLV 346 (520)
Q Consensus 286 ---~~vPd~lv~~ll~~~l~~~~~~~~~G~ILDGFPrt~~----Qae~l~~~~~~p~~VI~Ld~~~~~ 346 (520)
.-+|.+-+.+-+++..+ ..+=.-+||.+|+.+. |--++-.++-..+.|++||-|...
T Consensus 100 Lk~~~~~k~ei~~rV~eva~----~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSn 163 (338)
T COG3839 100 LKLRGVPKAEIDKRVKEVAK----LLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSN 163 (338)
T ss_pred hhhCCCchHHHHHHHHHHHH----HcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhH
Confidence 01122222222222222 1234567888997643 555677777777889999988753
No 279
>KOG0734|consensus
Probab=94.85 E-value=0.33 Score=53.22 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=30.5
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeeh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISL 257 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~ 257 (520)
.+-|+=|++.||||.|||.+|+.+|-+- |.+.+.+
T Consensus 334 GKLPKGVLLvGPPGTGKTlLARAvAGEA-~VPFF~~ 368 (752)
T KOG0734|consen 334 GKLPKGVLLVGPPGTGKTLLARAVAGEA-GVPFFYA 368 (752)
T ss_pred CcCCCceEEeCCCCCchhHHHHHhhccc-CCCeEec
Confidence 4567789999999999999999999986 8888765
No 280
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.83 E-value=0.043 Score=53.58 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=25.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhC-----CCCeeeehh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDY-----PNWTQISLG 258 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~-----~g~~~is~g 258 (520)
+....++|.|+||||||++|.+++... ....++|+.
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~e 57 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFE 57 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESS
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEec
Confidence 346789999999999999998765321 145566653
No 281
>PRK04195 replication factor C large subunit; Provisional
Probab=94.82 E-value=0.028 Score=61.66 Aligned_cols=32 Identities=28% Similarity=0.644 Sum_probs=28.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeeh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISL 257 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~ 257 (520)
++.++|.||||+||||+|+.|++.+ |+.++.+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el-~~~~iel 70 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY-GWEVIEL 70 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc-CCCEEEE
Confidence 6679999999999999999999997 8766644
No 282
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=94.82 E-value=0.024 Score=49.16 Aligned_cols=22 Identities=23% Similarity=0.370 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k 248 (520)
+|+|+|.||+||||+...|...
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999864
No 283
>PRK13949 shikimate kinase; Provisional
Probab=94.81 E-value=0.52 Score=44.26 Aligned_cols=106 Identities=9% Similarity=0.059 Sum_probs=63.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCcEEEe---CCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHhhhCccCCccc----
Q psy11031 37 FLSSKTVTEVLMLEMKMSPAAKAFLIS---GYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQIDYGAKLGHVI---- 109 (520)
Q Consensus 37 lVPdelv~~ll~~~l~~~~~~~G~ILD---GFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl~rg~~~~r~d---- 109 (520)
..-.++-.+++.+ +.. ..+||+. |+|-+..+...+.. -+.||+|++|-+.+.+|+..... +|..
T Consensus 54 ~~fr~~e~~~l~~-l~~---~~~~vis~Ggg~~~~~~~~~~l~~----~~~vi~L~~~~~~~~~Ri~~~~~-~RP~~~~~ 124 (169)
T PRK13949 54 AVFRELERNMLHE-VAE---FEDVVISTGGGAPCFFDNMELMNA----SGTTVYLKVSPEVLFVRLRLAKQ-QRPLLKGK 124 (169)
T ss_pred HHHHHHHHHHHHH-HHh---CCCEEEEcCCcccCCHHHHHHHHh----CCeEEEEECCHHHHHHHHhcCCC-CCCCCCCC
Confidence 4555566666655 432 3478884 88888887744432 36899999999999999953211 3431
Q ss_pred -hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCC-CChHHHHHHHHHH
Q psy11031 110 -LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGE-RNPVEVYADFRTA 156 (520)
Q Consensus 110 -~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~-~~~eeV~~~i~~~ 156 (520)
.+.+...+..-++. -..+|++.. +.||.+ .+++++.+.|.+.
T Consensus 125 ~~~~~~~~i~~l~~~---R~~~Y~~ad--~~id~~~~~~~e~~~~I~~~ 168 (169)
T PRK13949 125 SDEELLDFIIEALEK---RAPFYRQAK--IIFNADKLEDESQIEQLVQR 168 (169)
T ss_pred ChHHHHHHHHHHHHH---HHHHHHhCC--EEEECCCCCHHHHHHHHHHh
Confidence 22222233333333 334566643 556765 4888888887654
No 284
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.80 E-value=0.059 Score=57.51 Aligned_cols=27 Identities=26% Similarity=0.281 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
..|.+|+++|++|+||||.+.+||..|
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 347799999999999999999999764
No 285
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=94.79 E-value=0.026 Score=62.14 Aligned_cols=34 Identities=26% Similarity=0.400 Sum_probs=28.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeeh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISL 257 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~ 257 (520)
..|+-+++.||||+|||++|+.|+... +...+++
T Consensus 86 ~~~~giLL~GppGtGKT~la~alA~~~-~~~~~~i 119 (495)
T TIGR01241 86 KIPKGVLLVGPPGTGKTLLAKAVAGEA-GVPFFSI 119 (495)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHc-CCCeeec
Confidence 345669999999999999999999986 7666544
No 286
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.78 E-value=0.029 Score=53.01 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
..++++||+|+|||.+|+.|++.+
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l 27 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELL 27 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999987
No 287
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=94.78 E-value=0.25 Score=45.89 Aligned_cols=79 Identities=10% Similarity=0.086 Sum_probs=50.6
Q ss_pred CCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHhh-hCccCCccc----------hHHHHHHHHHHHhccchHHHHhhh
Q psy11031 65 YPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQID-YGAKLGHVI----------LSLARMELANFYQNVTPVTDFFDQ 133 (520)
Q Consensus 65 FPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d----------~e~i~~Rl~~Y~~~t~pvi~~Y~~ 133 (520)
++-+..+. .++. ..+.+|+|++|.+++.+|+. +.....|.. .+.+++|...|.+..
T Consensus 81 ~vl~~~~~-~~l~---~~~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~r~~~y~~~a--------- 147 (171)
T PRK03731 81 IILTEENR-HFMR---NNGIVIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEVAEVLAEREALYREVA--------- 147 (171)
T ss_pred ccCCHHHH-HHHH---hCCEEEEEECCHHHHHHHHccccccccCCcCCCCChHHHHHHHHHHHHHHHHHhC---------
Confidence 45444443 3332 35679999999999999994 322112221 234444544444322
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHHH
Q psy11031 134 RGMLIAVNGERNPVEVYADFRTAVLK 159 (520)
Q Consensus 134 ~~~l~~Ida~~~~eeV~~~i~~~l~~ 159 (520)
.++||+++++++|+.+|.+.|.+
T Consensus 148 ---~~~Id~~~~~e~v~~~i~~~l~~ 170 (171)
T PRK03731 148 ---HHIIDATQPPSQVVSEILSALAQ 170 (171)
T ss_pred ---CEEEcCCCCHHHHHHHHHHHHhc
Confidence 27899999999999999988754
No 288
>KOG0737|consensus
Probab=94.78 E-value=0.11 Score=54.56 Aligned_cols=128 Identities=16% Similarity=0.234 Sum_probs=76.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeee--ehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHH
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI--SLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAE 300 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i--s~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~ 300 (520)
..|+-|++.||||+|||-+|+.++++- |...| +++.|..+|. |+ -.++++ .
T Consensus 125 ~p~kGiLL~GPpG~GKTmlAKA~Akea-ga~fInv~~s~lt~KWf-------------------gE------~eKlv~-A 177 (386)
T KOG0737|consen 125 RPPKGILLYGPPGTGKTMLAKAIAKEA-GANFINVSVSNLTSKWF-------------------GE------AQKLVK-A 177 (386)
T ss_pred cCCccceecCCCCchHHHHHHHHHHHc-CCCcceeeccccchhhH-------------------HH------HHHHHH-H
Confidence 357789999999999999999999985 66555 4444444111 11 011111 1
Q ss_pred HhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhccCCCCCHHHHHHHHHHHHHHhHHHHHHhhhC
Q psy11031 301 MKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHKGQIDNSVSAFRRRLELFRERTLPMLRAMDVE 380 (520)
Q Consensus 301 l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~ 380 (520)
+- .|-. +..|.+||+|--+..++.++..| -|+.+.--.+|...+..+..-= .
T Consensus 178 vF-----------------------slAs--Kl~P~iIFIDEvds~L~~R~s~d-HEa~a~mK~eFM~~WDGl~s~~--~ 229 (386)
T KOG0737|consen 178 VF-----------------------SLAS--KLQPSIIFIDEVDSFLGQRRSTD-HEATAMMKNEFMALWDGLSSKD--S 229 (386)
T ss_pred HH-----------------------hhhh--hcCcceeehhhHHHHHhhcccch-HHHHHHHHHHHHHHhccccCCC--C
Confidence 11 0111 33577899887666555444433 3444444456776665542211 1
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031 381 TRLTIVDGDTQLPQVREEFERVLKK 405 (520)
Q Consensus 381 ~~l~~IDa~~~~e~V~~~I~~~I~~ 405 (520)
..++++=|...|-++.+.|.+.+-.
T Consensus 230 ~rVlVlgATNRP~DlDeAiiRR~p~ 254 (386)
T KOG0737|consen 230 ERVLVLGATNRPFDLDEAIIRRLPR 254 (386)
T ss_pred ceEEEEeCCCCCccHHHHHHHhCcc
Confidence 2477788888898898888877643
No 289
>KOG0635|consensus
Probab=94.77 E-value=0.053 Score=50.14 Aligned_cols=114 Identities=15% Similarity=0.135 Sum_probs=61.4
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCC---CCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHH
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYP---NWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVY 298 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~---g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~ 298 (520)
..+..+||+.|..||||||+|-.|.+.++ .+.++=-||=+| .-+.. .+|-..++.-++=..+ .-|.+|+.
T Consensus 28 ~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvR---hGLN~--DL~F~a~dR~ENIRRi--geVaKLFA 100 (207)
T KOG0635|consen 28 KQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVR---HGLNK--DLGFKAEDRNENIRRI--GEVAKLFA 100 (207)
T ss_pred cCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccc---ccccc--ccCcchhhhhhhHHHH--HHHHHHHh
Confidence 35678999999999999999988877542 345566667777 43322 1221111110000000 01222221
Q ss_pred HHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhc
Q psy11031 299 AEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHK 349 (520)
Q Consensus 299 ~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r 349 (520)
+.-. - .-.-+|.-|-.+.+++..|.... +..=+|+|||.++...
T Consensus 101 Dag~----i-ciaSlISPYR~dRdacRel~~~~--~FiEvfmdvpl~vcE~ 144 (207)
T KOG0635|consen 101 DAGV----I-CIASLISPYRKDRDACRELLPEG--DFIEVFMDVPLEVCEA 144 (207)
T ss_pred ccce----e-eeehhcCchhccHHHHHHhccCC--CeEEEEecCcHHHhhc
Confidence 1000 0 01123556778888888776432 2234899999987643
No 290
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=94.74 E-value=0.03 Score=60.03 Aligned_cols=40 Identities=15% Similarity=0.196 Sum_probs=31.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCC----CCeeeehhhHHh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYP----NWTQISLGKLLR 262 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~----g~~~is~gdLlr 262 (520)
..|.+|.|.|+.||||||+++.|...+. ....||++++.-
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYL 253 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYL 253 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccC
Confidence 3578899999999999999999976431 256678887764
No 291
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.73 E-value=0.026 Score=56.27 Aligned_cols=25 Identities=16% Similarity=0.380 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
+..++|.|++||||||+++.++..+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999999875
No 292
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=94.71 E-value=0.76 Score=43.21 Aligned_cols=155 Identities=16% Similarity=0.178 Sum_probs=83.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCC--eeeehhhHHhhhhcccccCCcchHH-----HHhhhhc----------CC
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNW--TQISLGKLLRYFANIEDDGEGLNSR-----IKSSVSA----------GD 286 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~--~~is~gdLlr~~~~~~~~~t~~g~~-----i~~~l~~----------G~ 286 (520)
....|+|+||.|+||-|+.......+.+- .|+----+-| .. ..+++-... ....-.. |-
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITR---pa-~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhGL 79 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITR---PA-DAGGEDHDALSEAEFNTRAGQGAFALSWQAHGL 79 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecc---cC-CCCcccccccCHHHHHHHhhcCceeEEehhcCc
Confidence 36789999999999999998877765333 2222212222 11 112111110 0000001 10
Q ss_pred --ccchHHHHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhc---cCCCCCHHHHHH
Q psy11031 287 --FVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHK---GQIDNSVSAFRR 361 (520)
Q Consensus 287 --~vPd~lv~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r---~R~dD~~e~~~~ 361 (520)
-+|.++ ...|. .+.-+|..|--.-+-++.. .+. .-.|+.|.++++++.+ .|...+.+.+..
T Consensus 80 ~Ygip~eI-----d~wl~-----~G~vvl~NgSRa~Lp~arr---ry~-~Llvv~ita~p~VLaqRL~~RGREs~eeI~a 145 (192)
T COG3709 80 SYGIPAEI-----DLWLA-----AGDVVLVNGSRAVLPQARR---RYP-QLLVVCITASPEVLAQRLAERGRESREEILA 145 (192)
T ss_pred cccCchhH-----HHHHh-----CCCEEEEeccHhhhHHHHH---hhh-cceeEEEecCHHHHHHHHHHhccCCHHHHHH
Confidence 133321 22222 2334555554333334332 222 2348889998887542 455568889999
Q ss_pred HHHHHHHHhHHHHHHhh-hCCCEEEEECCCCHHHHHHHHHHHHH
Q psy11031 362 RLELFRERTLPMLRAMD-VETRLTIVDGDTQLPQVREEFERVLK 404 (520)
Q Consensus 362 Rl~~f~~~~~~l~~~y~-~~~~l~~IDa~~~~e~V~~~I~~~I~ 404 (520)
||..- ..|. ..+.+.+||.+...+.--+.+...+.
T Consensus 146 RL~R~--------a~~~~~~~dv~~idNsG~l~~ag~~ll~~l~ 181 (192)
T COG3709 146 RLARA--------ARYTAGPGDVTTIDNSGELEDAGERLLALLH 181 (192)
T ss_pred HHHhh--------cccccCCCCeEEEcCCCcHHHHHHHHHHHHH
Confidence 88731 2232 23568899999998877776666554
No 293
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.71 E-value=0.022 Score=51.39 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHHhhC
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
+++|.|+|||||||+|..++...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 37899999999999999997653
No 294
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.70 E-value=0.039 Score=60.55 Aligned_cols=39 Identities=26% Similarity=0.327 Sum_probs=30.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeee--ehhhHHh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI--SLGKLLR 262 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i--s~gdLlr 262 (520)
..+..+++.||||+|||.+|+.++... ++..+ ...+++-
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~-~~~fi~v~~~~l~s 314 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALES-RSRFISVKGSELLS 314 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhC-CCeEEEeeCHHHhc
Confidence 456689999999999999999999954 55554 4456665
No 295
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=0.1 Score=54.53 Aligned_cols=39 Identities=26% Similarity=0.377 Sum_probs=30.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeee--hhhHHh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQIS--LGKLLR 262 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is--~gdLlr 262 (520)
..|+=|++.||||+|||.+|+.+|... +...|. -.+|++
T Consensus 183 ~PPKGVLLYGPPGTGKTLLAkAVA~~T-~AtFIrvvgSElVq 223 (406)
T COG1222 183 DPPKGVLLYGPPGTGKTLLAKAVANQT-DATFIRVVGSELVQ 223 (406)
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhcc-CceEEEeccHHHHH
Confidence 456779999999999999999999986 666653 335555
No 296
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.69 E-value=0.079 Score=55.45 Aligned_cols=26 Identities=23% Similarity=0.548 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
..+..++|.|+||+|||++++.+.+.
T Consensus 38 ~~~~~i~I~G~~GtGKT~l~~~~~~~ 63 (365)
T TIGR02928 38 SRPSNVFIYGKTGTGKTAVTKYVMKE 63 (365)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 44567999999999999999998864
No 297
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=94.67 E-value=0.028 Score=58.35 Aligned_cols=30 Identities=17% Similarity=0.237 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCee
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQ 254 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~ 254 (520)
.+..++|.||||+||||+|+.+++.+ ++..
T Consensus 50 ~~~~~ll~GppG~GKT~la~~ia~~l-~~~~ 79 (328)
T PRK00080 50 ALDHVLLYGPPGLGKTTLANIIANEM-GVNI 79 (328)
T ss_pred CCCcEEEECCCCccHHHHHHHHHHHh-CCCe
Confidence 35578999999999999999999987 7643
No 298
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=94.66 E-value=0.031 Score=60.49 Aligned_cols=32 Identities=25% Similarity=0.381 Sum_probs=26.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeee
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI 255 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i 255 (520)
..|.-++|.||||+|||++|+.++... +...+
T Consensus 215 ~~p~gVLL~GPPGTGKT~LAraIA~el-~~~fi 246 (438)
T PTZ00361 215 KPPKGVILYGPPGTGKTLLAKAVANET-SATFL 246 (438)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh-CCCEE
Confidence 456779999999999999999999986 65444
No 299
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.65 E-value=0.21 Score=54.01 Aligned_cols=26 Identities=35% Similarity=0.552 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
.+|.+|++.|++||||||.|.+||..
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHH
Confidence 35789999999999999998888865
No 300
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=94.65 E-value=0.029 Score=57.26 Aligned_cols=29 Identities=14% Similarity=0.255 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCe
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWT 253 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~ 253 (520)
.+..++|.||||+|||++|+.+++.+ +..
T Consensus 29 ~~~~~ll~Gp~G~GKT~la~~ia~~~-~~~ 57 (305)
T TIGR00635 29 ALDHLLLYGPPGLGKTTLAHIIANEM-GVN 57 (305)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh-CCC
Confidence 34568999999999999999999986 643
No 301
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.63 E-value=0.025 Score=60.82 Aligned_cols=31 Identities=16% Similarity=0.184 Sum_probs=26.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCCCeeeeh
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISL 257 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~ 257 (520)
..|+|.||||||||++|+.|++.+ +++.+.+
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l-~~pf~~i 139 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARIL-DVPFAIA 139 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHh-CCCceec
Confidence 459999999999999999999886 7665544
No 302
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=94.63 E-value=0.66 Score=46.04 Aligned_cols=161 Identities=16% Similarity=0.146 Sum_probs=88.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCc--cchHHHHHHHHHH
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDF--VNRDVVLDIVYAE 300 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~--vPd~lv~~ll~~~ 300 (520)
..|.+|+|.|..||||+...++|.+.+ +=.++.+-.+-.-..++. ...-++.--+.+=..|+. .--.....++..+
T Consensus 29 ~~~vlIv~eG~DaAGKg~~I~~l~~~l-DPRg~~v~~~~~pt~eE~-~~p~lwRfw~~lP~~G~i~IF~rSwY~~~lv~r 106 (230)
T TIGR03707 29 GARVVIVFEGRDAAGKGGTIKRITEHL-NPRGARVVALPKPSDRER-TQWYFQRYVQHLPAAGEIVLFDRSWYNRAGVER 106 (230)
T ss_pred CCCEEEEEeCCCCCCchHHHHHHHHhc-CCCeeEEEeCCCCCHHHH-cChHHHHHHHhCCCCCeEEEEeCchhhhHHHHH
Confidence 458899999999999999999999876 444444321111000110 001111111111122321 1124455555555
Q ss_pred HhccccCCCcEEEEe-CCCCCHHHHHHHHhhcCCCCCE---EEecCChhhhhc---cCCCC-------CHH--HHHHHHH
Q psy11031 301 MKKTKYTEADGIVID-GFPREMSQLIDFENKYQIHPPM---ILIDCSKLVLHK---GQIDN-------SVS--AFRRRLE 364 (520)
Q Consensus 301 l~~~~~~~~~G~ILD-GFPrt~~Qae~l~~~~~~p~~V---I~Ld~~~~~~~r---~R~dD-------~~e--~~~~Rl~ 364 (520)
+. |++-+ -|.+-.+++..||+.+.....+ |||.++.+...+ .|.+| ++. .-+++.+
T Consensus 107 v~--------~~~~~~~~~~~~~~I~~FEr~L~~~G~~IlKfflhIsk~eQ~kRl~~r~~~p~k~Wk~~~~D~~~~~~yd 178 (230)
T TIGR03707 107 VM--------GFCTDEEYEEFLRQVPEFERMLVRDGIHLFKYWLSVSREEQLRRFKARIDDPLKQWKLSPMDLASLDRWD 178 (230)
T ss_pred hc--------CCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCcccccCCHHHHHHHHhHH
Confidence 55 11111 1456678899999988765553 678998864321 12111 222 2345677
Q ss_pred HHHHHhHHHHHHhhh-CCCEEEEECCCCHH
Q psy11031 365 LFRERTLPMLRAMDV-ETRLTIVDGDTQLP 393 (520)
Q Consensus 365 ~f~~~~~~l~~~y~~-~~~l~~IDa~~~~e 393 (520)
.|......+++.=+. ..-+++|+|+....
T Consensus 179 ~y~~a~e~~l~~T~t~~APW~iI~a~dk~~ 208 (230)
T TIGR03707 179 DYSRAKDEMFARTDTPEAPWTVVRSDDKKR 208 (230)
T ss_pred HHHHHHHHHHHhcCCCCCCeEEEcCCCHHH
Confidence 777777777664332 34699999997643
No 303
>KOG0731|consensus
Probab=94.62 E-value=0.022 Score=64.87 Aligned_cols=52 Identities=17% Similarity=0.329 Sum_probs=38.9
Q ss_pred cccCccccccccCCCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehh--hHHh
Q psy11031 209 VVSEPYRKIKSVERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLG--KLLR 262 (520)
Q Consensus 209 ~~~~~~~~~~~~~~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~g--dLlr 262 (520)
|+-||..|. -+....|+=++|+||||+|||.+|+.+|.+- |++.+|+. +++.
T Consensus 329 fLKNP~~Y~-~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-gVPF~svSGSEFvE 382 (774)
T KOG0731|consen 329 FLKNPEQYQ-ELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSVSGSEFVE 382 (774)
T ss_pred HhcCHHHHH-HcCCcCcCceEEECCCCCcHHHHHHHHhccc-CCceeeechHHHHH
Confidence 444554331 1346678889999999999999999999986 99998774 4444
No 304
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.61 E-value=0.024 Score=51.83 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
|+|.|+|+.+|||||+|+.|...+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999997754
No 305
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=94.60 E-value=0.028 Score=50.42 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
..+|.++|++||||||++..|...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999998764
No 306
>KOG3062|consensus
Probab=94.60 E-value=0.062 Score=52.77 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
+.|+|+|-|+|||||.|+.|.+.+
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l 25 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREAL 25 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHH
Confidence 468999999999999999988754
No 307
>PRK08181 transposase; Validated
Probab=94.57 E-value=0.17 Score=51.38 Aligned_cols=38 Identities=16% Similarity=0.136 Sum_probs=28.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhh---C-CCCeeeehhhHHh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQD---Y-PNWTQISLGKLLR 262 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k---~-~g~~~is~gdLlr 262 (520)
...++|+||||+|||.+|..|+.. . ....++++.+|+.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~ 147 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQ 147 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHH
Confidence 356999999999999999998742 1 1355677777776
No 308
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=94.57 E-value=0.12 Score=51.85 Aligned_cols=26 Identities=35% Similarity=0.455 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....+|+|.|++|+||||+|..+++.
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccc
Confidence 45788999999999999999998866
No 309
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.57 E-value=0.02 Score=57.91 Aligned_cols=36 Identities=14% Similarity=0.203 Sum_probs=28.3
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCC--C--CeeeehhhHHh
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYP--N--WTQISLGKLLR 262 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~--g--~~~is~gdLlr 262 (520)
+|.|.|++||||||+|+.|++.+. | ...|+.++..+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 488999999999999999987651 2 45677766665
No 310
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.56 E-value=0.028 Score=58.37 Aligned_cols=27 Identities=33% Similarity=0.577 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
..+.+|.|+||+||||||.+.+|+..+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 357899999999999999999998754
No 311
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.56 E-value=0.023 Score=55.51 Aligned_cols=36 Identities=22% Similarity=0.270 Sum_probs=26.7
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHH
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLL 261 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLl 261 (520)
-.+.-+++|+||.||||||+.+.|. ++.-++.|++.
T Consensus 25 v~~Gevv~iiGpSGSGKSTlLRclN----~LE~~~~G~I~ 60 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLLRCLN----GLEEPDSGSIT 60 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHH----CCcCCCCceEE
Confidence 3457789999999999999999875 34444444443
No 312
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=94.54 E-value=0.032 Score=59.97 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=25.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCCCeee
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQI 255 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~i 255 (520)
..|+|.||||||||++|+.|++.+ ++++.
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l-~~pf~ 145 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARIL-NVPFA 145 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhc-CCCeE
Confidence 469999999999999999999886 76664
No 313
>PHA02244 ATPase-like protein
Probab=94.52 E-value=0.028 Score=59.32 Aligned_cols=36 Identities=17% Similarity=0.448 Sum_probs=30.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR 262 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr 262 (520)
.-|+|.||||||||++|+.|+..+ +...+.+..++.
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~l-g~pfv~In~l~d 155 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEAL-DLDFYFMNAIMD 155 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh-CCCEEEEecChH
Confidence 348899999999999999999986 888887765544
No 314
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=94.51 E-value=0.029 Score=52.26 Aligned_cols=28 Identities=21% Similarity=0.440 Sum_probs=18.2
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
...++.++|.|++|+|||++.+.+.+.+
T Consensus 21 ~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 21 SGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp S-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456889999999999999999877654
No 315
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=94.50 E-value=0.044 Score=61.66 Aligned_cols=41 Identities=22% Similarity=0.434 Sum_probs=34.6
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCC-CCeeeehhhHHh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYP-NWTQISLGKLLR 262 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~-g~~~is~gdLlr 262 (520)
..+.+++|+.||||.|||++++.||+..- .|+.+|+|-+=-
T Consensus 347 ~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrD 388 (782)
T COG0466 347 KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRD 388 (782)
T ss_pred cCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCcccc
Confidence 45679999999999999999999999741 467889988755
No 316
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=94.48 E-value=0.033 Score=53.90 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
|.+|.|.|++||||||+++++.+.+
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l 25 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRAL 25 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 5689999999999999999998764
No 317
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.47 E-value=0.03 Score=56.85 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
..+.+|.++|++|+||||.|.+||..+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL 96 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 346789999999999999999998654
No 318
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=94.47 E-value=0.04 Score=50.96 Aligned_cols=32 Identities=19% Similarity=0.315 Sum_probs=26.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLG 258 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~g 258 (520)
..=++|.|++||||||+|..|.++ |+..++-+
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~--g~~lvaDD 45 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR--GHRLVADD 45 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc--CCeEEECC
Confidence 355999999999999999988875 77777554
No 319
>PF02283 CobU: Cobinamide kinase / cobinamide phosphate guanyltransferase; InterPro: IPR003203 This family is composed of a group of bifunctional cobalbumin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape [].; GO: 0000166 nucleotide binding, 0043752 adenosylcobinamide kinase activity, 0051188 cofactor biosynthetic process; PDB: 1CBU_C 1C9K_B.
Probab=94.47 E-value=0.071 Score=50.26 Aligned_cols=34 Identities=24% Similarity=0.393 Sum_probs=25.9
Q ss_pred EEEEcCCCCChhHHHHHHHhhC-CCCeeeehhhHH
Q psy11031 228 VWVVGGPGSSKSEMCQKVLQDY-PNWTQISLGKLL 261 (520)
Q Consensus 228 I~vlG~PGSGKsT~a~~La~k~-~g~~~is~gdLl 261 (520)
|+|+|+..||||..|+.++.++ ....+|.++...
T Consensus 1 ilv~GG~rSGKS~~Ae~la~~~~~~~~YiAT~~~~ 35 (167)
T PF02283_consen 1 ILVTGGARSGKSSFAERLALSFGGPVTYIATARPF 35 (167)
T ss_dssp EEEEESTTSSHHHHHHHHHTS--SCEEEEESSHHH
T ss_pred CEEeCCCCcchHHHHHHHHHhcCCCcEEEeCCCCC
Confidence 7899999999999999999875 244556554444
No 320
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=94.40 E-value=0.036 Score=58.63 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=28.0
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeeh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISL 257 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~ 257 (520)
.....-.++.||||+||||+|+.|+... +.....+
T Consensus 45 ~~~l~SmIl~GPPG~GKTTlA~liA~~~-~~~f~~~ 79 (436)
T COG2256 45 AGHLHSMILWGPPGTGKTTLARLIAGTT-NAAFEAL 79 (436)
T ss_pred cCCCceeEEECCCCCCHHHHHHHHHHhh-CCceEEe
Confidence 4456668999999999999999999976 6655443
No 321
>COG2087 CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]
Probab=94.39 E-value=0.11 Score=48.66 Aligned_cols=83 Identities=14% Similarity=0.266 Sum_probs=49.6
Q ss_pred EEEEEcCCCCChhHHHHHHHhhC-CCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhccc
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDY-PNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTK 305 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~-~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~ 305 (520)
.|||+|+.-||||+.|++++.+. ..+.||.++.-+. .+ +.+||..++
T Consensus 2 ~ilvtGgaRSGKS~~AE~la~~~~~~v~YvAT~~a~D---------~E-----------------------m~~RI~~Hr 49 (175)
T COG2087 2 MILVTGGARSGKSSFAEALAGESGGQVLYVATGRAFD---------DE-----------------------MQERIAHHR 49 (175)
T ss_pred eEEEecCccCCchHHHHHHHHhhCCceEEEEecCCCC---------HH-----------------------HHHHHHHHH
Confidence 59999999999999999999873 2444555433222 11 234444323
Q ss_pred cCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCCh
Q psy11031 306 YTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSK 344 (520)
Q Consensus 306 ~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~ 344 (520)
..-..+|...--|.++.- .|.. ...+..++++||=-
T Consensus 50 ~rRp~~W~tvE~~~~l~~--~L~~-~~~~~~~VLvDcLt 85 (175)
T COG2087 50 ARRPEHWRTVEAPLDLAT--LLEA-LIEPGDVVLVDCLT 85 (175)
T ss_pred hcCCCcceEEeccccHHH--HHHh-cccCCCEEEEEcHH
Confidence 333456755554555433 3333 23355799999954
No 322
>KOG1533|consensus
Probab=94.38 E-value=0.02 Score=56.41 Aligned_cols=20 Identities=45% Similarity=0.710 Sum_probs=17.0
Q ss_pred EEEEcCCCCChhHHHHHHHh
Q psy11031 228 VWVVGGPGSSKSEMCQKVLQ 247 (520)
Q Consensus 228 I~vlG~PGSGKsT~a~~La~ 247 (520)
-+|+|||||||||.|.-..+
T Consensus 5 qvVIGPPgSGKsTYc~g~~~ 24 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQ 24 (290)
T ss_pred eEEEcCCCCCccchhhhHHH
Confidence 57899999999999976554
No 323
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.35 E-value=0.18 Score=55.67 Aligned_cols=31 Identities=13% Similarity=0.088 Sum_probs=26.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCee
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQ 254 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~ 254 (520)
+.+.-+++.||||+||||.|+.+++.+ ++.+
T Consensus 41 ri~~a~Lf~Gp~G~GKTT~ArilAk~L-nc~~ 71 (507)
T PRK06645 41 RLAGGYLLTGIRGVGKTTSARIIAKAV-NCSA 71 (507)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh-cCcc
Confidence 446679999999999999999999987 6644
No 324
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=94.34 E-value=0.17 Score=49.08 Aligned_cols=89 Identities=11% Similarity=0.039 Sum_probs=64.1
Q ss_pred CcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHh-hhCccCCccchHHHHHHHHHHHhccchHHHHhhhCCc
Q psy11031 58 KAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQI-DYGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGM 136 (520)
Q Consensus 58 ~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl-~rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~ 136 (520)
..+++-+-|- +-++ .+. ..+|.||++.||.++..+|+ .|+ +.+.+.+.+|+..+..+...+ +.+
T Consensus 115 ~~vvv~e~pL-L~e~-~~~---~~~d~ii~V~a~~e~~~~Rl~~R~----~~s~e~~~~Ri~~q~~~~~~~-~~a----- 179 (208)
T PRK14731 115 KRILVKEAAI-LFES-GGD---AGLDFIVVVAADTELRLERAVQRG----MGSREEIRRRIAAQWPQEKLI-ERA----- 179 (208)
T ss_pred CCEEEEEeee-eeec-Cch---hcCCeEEEEECCHHHHHHHHHHcC----CCCHHHHHHHHHHcCChHHHH-HhC-----
Confidence 3566655562 2222 111 25799999999999999999 453 336788899999887776665 221
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHh
Q psy11031 137 LIAVNGERNPVEVYADFRTAVLKIL 161 (520)
Q Consensus 137 l~~Ida~~~~eeV~~~i~~~l~~~~ 161 (520)
-+.|+.+.+.+++++++..+++.++
T Consensus 180 d~vI~N~g~~e~l~~~i~~~~~~~~ 204 (208)
T PRK14731 180 DYVIYNNGTLDELKAQTEQLYQVLL 204 (208)
T ss_pred CEEEECCCCHHHHHHHHHHHHHHHH
Confidence 3568889999999999999987765
No 325
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.33 E-value=0.026 Score=59.28 Aligned_cols=116 Identities=15% Similarity=0.167 Sum_probs=65.6
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhh---cccccCCcchHHHHhh-----------hhc---
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFA---NIEDDGEGLNSRIKSS-----------VSA--- 284 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~---~~~~~~t~~g~~i~~~-----------l~~--- 284 (520)
-...-++.++||.||||||+.+.|| |+...+.|.++-... ......-.+|...++| +.-
T Consensus 28 i~~Gef~~lLGPSGcGKTTlLR~IA----Gfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk 103 (352)
T COG3842 28 IKKGEFVTLLGPSGCGKTTLLRMIA----GFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLK 103 (352)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHh----CCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhh
Confidence 3446789999999999999999998 666666665543000 0111111222222221 111
Q ss_pred -CCccchHHHHHHHHHHHhccccCCCcEEEEeCCCCC----HHHHHHHHhhcCCCCCEEEecCChh
Q psy11031 285 -GDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPRE----MSQLIDFENKYQIHPPMILIDCSKL 345 (520)
Q Consensus 285 -G~~vPd~lv~~ll~~~l~~~~~~~~~G~ILDGFPrt----~~Qae~l~~~~~~p~~VI~Ld~~~~ 345 (520)
....+++.+.+.+.+.+. ...-.. .-+.+|.. -.|.-+|.+++...+.|++||=|..
T Consensus 104 ~~~~~~~~~i~~rv~e~L~--lV~L~~--~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlS 165 (352)
T COG3842 104 VRKKLKKAEIKARVEEALE--LVGLEG--FADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLS 165 (352)
T ss_pred hcCCCCHHHHHHHHHHHHH--HcCchh--hhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCccc
Confidence 222344444444455454 111111 45566755 3477788888888888999997653
No 326
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=94.33 E-value=0.053 Score=51.42 Aligned_cols=34 Identities=9% Similarity=0.287 Sum_probs=27.8
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR 262 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr 262 (520)
+|.|.+..|||++++|++||+++ |+.+++- +++.
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~L-g~~~~d~-~ii~ 34 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKL-GYPYYDR-EIIE 34 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHC-T--EE-H-HHHH
T ss_pred CEEECCCCCCChHHHHHHHHHHc-CCccCCH-HHHH
Confidence 58899999999999999999998 9999998 7777
No 327
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=94.31 E-value=0.7 Score=46.79 Aligned_cols=161 Identities=17% Similarity=0.139 Sum_probs=88.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCc--cchHHHHHHHHHH
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDF--VNRDVVLDIVYAE 300 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~--vPd~lv~~ll~~~ 300 (520)
..|.+|+|.|..||||+...++|.+.+ +=.++.+-.+-.-..++ ....-++.--+.+=..|+. .--....+++..+
T Consensus 54 ~~~vlIv~eG~DaAGKG~~I~~l~~~l-DPRg~~V~s~~~Pt~eE-~~~p~lWRfw~~lP~~G~i~IF~RSWY~~vl~~r 131 (264)
T TIGR03709 54 RRSLLLVLQAMDAAGKDGTIRHVMSGV-NPQGCQVTSFKAPSAEE-LDHDFLWRIHKALPERGEIGIFNRSHYEDVLVVR 131 (264)
T ss_pred CCcEEEEEECCCCCCchHHHHHHHHhc-CCCeeEEEeCCCCCHHH-HcCchHHHHHHhCCCCCeEEEEcCccccchhhhh
Confidence 468999999999999999999999875 44444332111100000 0111112211111122321 1123444555555
Q ss_pred HhccccCCCcEEEEe-CCCCCHHHHHHHHhhcCCCCCE---EEecCChhhhhc---cCCC-------CC--HHHHHHHHH
Q psy11031 301 MKKTKYTEADGIVID-GFPREMSQLIDFENKYQIHPPM---ILIDCSKLVLHK---GQID-------NS--VSAFRRRLE 364 (520)
Q Consensus 301 l~~~~~~~~~G~ILD-GFPrt~~Qae~l~~~~~~p~~V---I~Ld~~~~~~~r---~R~d-------D~--~e~~~~Rl~ 364 (520)
+. |.+-+ -|.+.++++..||+.+.....+ |||+++.+...+ .|.+ -+ .-.-+++++
T Consensus 132 v~--------g~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKffLhIsk~eQ~kRl~~r~~~p~k~Wk~s~~D~~~~~~yd 203 (264)
T TIGR03709 132 VH--------GLIPKAIWERRYEDINDFERYLTENGTTILKFFLHISKEEQKKRFLARLDDPTKNWKFSPADLKERAYWD 203 (264)
T ss_pred hc--------CCCCHHHHHHHHHHHHHHHHHHHHCCcEEEEEEEeCCHHHHHHHHHHHhcCCcccccCCHHHHHHHHhHH
Confidence 54 11111 2455678888999988755543 678998864321 1111 12 223355678
Q ss_pred HHHHHhHHHHHHhhh-CCCEEEEECCCCHH
Q psy11031 365 LFRERTLPMLRAMDV-ETRLTIVDGDTQLP 393 (520)
Q Consensus 365 ~f~~~~~~l~~~y~~-~~~l~~IDa~~~~e 393 (520)
.|......++..=.. ..-+++|+|+....
T Consensus 204 ~y~~a~e~~l~~T~t~~APW~iI~a~dk~~ 233 (264)
T TIGR03709 204 DYMEAYEDALTATSTKHAPWYVVPADDKWF 233 (264)
T ss_pred HHHHHHHHHHHhcCCCCCCeEEEcCCCHHH
Confidence 888877777765332 35699999997644
No 328
>COG3911 Predicted ATPase [General function prediction only]
Probab=94.29 E-value=0.054 Score=50.02 Aligned_cols=30 Identities=17% Similarity=0.428 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeee
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI 255 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i 255 (520)
+-+++++.|+||+||||+...|++. |+..+
T Consensus 8 R~~~fIltGgpGaGKTtLL~aLa~~--Gfatv 37 (183)
T COG3911 8 RHKRFILTGGPGAGKTTLLAALARA--GFATV 37 (183)
T ss_pred cceEEEEeCCCCCcHHHHHHHHHHc--Cceee
Confidence 3478999999999999999999986 55444
No 329
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=94.27 E-value=0.039 Score=53.70 Aligned_cols=27 Identities=19% Similarity=0.434 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCCC
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPNW 252 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g~ 252 (520)
--+++.|+||||||++|++|..-++.+
T Consensus 23 h~lLl~GppGtGKTmlA~~l~~lLP~l 49 (206)
T PF01078_consen 23 HHLLLIGPPGTGKTMLARRLPSLLPPL 49 (206)
T ss_dssp --EEEES-CCCTHHHHHHHHHHCS--C
T ss_pred CCeEEECCCCCCHHHHHHHHHHhCCCC
Confidence 469999999999999999999866433
No 330
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.16 E-value=0.038 Score=53.26 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHHhhC
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
.|+|.||+||||||++..|...+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999887765
No 331
>PRK14974 cell division protein FtsY; Provisional
Probab=94.16 E-value=0.037 Score=57.98 Aligned_cols=40 Identities=25% Similarity=0.405 Sum_probs=28.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCC--CC-eeeehhhHHh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYP--NW-TQISLGKLLR 262 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~--g~-~~is~gdLlr 262 (520)
.+|.+|+|+|+|||||||.+.+|+..+. |. +.+..+|.+|
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R 180 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFR 180 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCc
Confidence 3578999999999999998888876431 33 2234446555
No 332
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=94.15 E-value=0.65 Score=51.04 Aligned_cols=174 Identities=11% Similarity=0.141 Sum_probs=93.5
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCC--CCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCc--cchHHHHHHH
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYP--NWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDF--VNRDVVLDIV 297 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~--g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~--vPd~lv~~ll 297 (520)
...|.+|+|.|..||||+++.++|.+.+- |+...+++.=-. ++ ....-++.--+.+=..|+. .--.....++
T Consensus 37 ~~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P~~---eE-~~~~flwRfw~~lP~~G~I~IFdRSWY~~vl 112 (493)
T TIGR03708 37 AGFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRPSD---EE-RERPPMWRFWRRLPPKGKIGIFFGSWYTRPL 112 (493)
T ss_pred cCCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCCCH---HH-hcCcHHHHHHHhCCCCCeEEEEcCcccchhh
Confidence 45688999999999999999999998751 333333321111 00 0111111111111122321 1123445555
Q ss_pred HHHHhccccCCCcEEEEe-CCCCCHHHHHHHHhhcCCCCCE---EEecCChhhhh-c--cCCCC-------CHHH--HHH
Q psy11031 298 YAEMKKTKYTEADGIVID-GFPREMSQLIDFENKYQIHPPM---ILIDCSKLVLH-K--GQIDN-------SVSA--FRR 361 (520)
Q Consensus 298 ~~~l~~~~~~~~~G~ILD-GFPrt~~Qae~l~~~~~~p~~V---I~Ld~~~~~~~-r--~R~dD-------~~e~--~~~ 361 (520)
..++. |++=+ -+.+-.+++..||+.+.....+ |||+++.+... | .|.+| +++- -++
T Consensus 113 verv~--------g~~~~~~~~~~~~~I~~FE~~L~~~G~~IlKffLhIsk~EQ~kRl~~r~~~P~k~WK~s~~D~~~r~ 184 (493)
T TIGR03708 113 IERLE--------GRIDEAKLDSHIEDINRFERMLADDGALILKFWLHLSKKQQKERLKKLEKDPETRWRVTPEDWKQLK 184 (493)
T ss_pred HHHhc--------CCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCccccCCCHHHHHHHH
Confidence 55544 11111 1345577888999988755543 67999886432 1 12211 2222 345
Q ss_pred HHHHHHHHhHHHHHHhhh-CCCEEEEECCCCHHH---HHHHHHHHHHHHH
Q psy11031 362 RLELFRERTLPMLRAMDV-ETRLTIVDGDTQLPQ---VREEFERVLKKII 407 (520)
Q Consensus 362 Rl~~f~~~~~~l~~~y~~-~~~l~~IDa~~~~e~---V~~~I~~~I~~~i 407 (520)
+...|......++..=.. ..-+++|+|+.-... |.+.|...|...+
T Consensus 185 ~wd~Y~~a~e~ml~~T~t~~APW~vI~addK~~arl~v~~~il~~L~~~l 234 (493)
T TIGR03708 185 VYDRYRKLAERMLRYTSTPYAPWTVVEGEDDRYRSLTVGRTLLAAIRARL 234 (493)
T ss_pred hHHHHHHHHHHHHHhcCCCCCCeEEEcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 577888777777664332 246999999976433 4444444444443
No 333
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=94.12 E-value=0.039 Score=57.69 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=23.6
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
...+.+|.|.|+|||||||++..|...+
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3467899999999999999999876643
No 334
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.09 E-value=0.25 Score=54.03 Aligned_cols=29 Identities=14% Similarity=0.173 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCe
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWT 253 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~ 253 (520)
.+.-+++.||||+||||+|+.+++.+ ++.
T Consensus 39 i~ha~Lf~GP~GtGKTTlAriLAk~L-nce 67 (484)
T PRK14956 39 IGHAYIFFGPRGVGKTTIARILAKRL-NCE 67 (484)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc-Ccc
Confidence 34568999999999999999999986 664
No 335
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=94.05 E-value=0.036 Score=51.98 Aligned_cols=33 Identities=9% Similarity=0.284 Sum_probs=28.0
Q ss_pred EEEEcCCCCChhHHHHHHHhhCCC-CeeeehhhHH
Q psy11031 228 VWVVGGPGSSKSEMCQKVLQDYPN-WTQISLGKLL 261 (520)
Q Consensus 228 I~vlG~PGSGKsT~a~~La~k~~g-~~~is~gdLl 261 (520)
|+=++.+||||||+|..|++-| | |.|+--+++-
T Consensus 2 lvPIAtiGCGKTTva~aL~~LF-g~wgHvQnDnI~ 35 (168)
T PF08303_consen 2 LVPIATIGCGKTTVALALSNLF-GEWGHVQNDNIT 35 (168)
T ss_pred EeeecCCCcCHHHHHHHHHHHc-CCCCccccCCCC
Confidence 4557899999999999999987 8 9998776663
No 336
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=94.02 E-value=0.039 Score=60.85 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
..|+-|+|.||||+|||++|+.+++.+
T Consensus 214 ~~p~GILLyGPPGTGKT~LAKAlA~eL 240 (512)
T TIGR03689 214 KPPKGVLLYGPPGCGKTLIAKAVANSL 240 (512)
T ss_pred CCCcceEEECCCCCcHHHHHHHHHHhh
Confidence 346679999999999999999999975
No 337
>PRK13342 recombination factor protein RarA; Reviewed
Probab=94.02 E-value=0.049 Score=58.54 Aligned_cols=32 Identities=13% Similarity=0.158 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeee
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQIS 256 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is 256 (520)
.+..++|.||||+||||+|+.|++.. +...+.
T Consensus 35 ~~~~ilL~GppGtGKTtLA~~ia~~~-~~~~~~ 66 (413)
T PRK13342 35 RLSSMILWGPPGTGKTTLARIIAGAT-DAPFEA 66 (413)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh-CCCEEE
Confidence 34568889999999999999999875 554443
No 338
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=94.01 E-value=0.048 Score=50.24 Aligned_cols=25 Identities=8% Similarity=0.240 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
...+|+|+|++||||||+.+.|...
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Confidence 3678999999999999999999864
No 339
>PRK04040 adenylate kinase; Provisional
Probab=94.00 E-value=0.63 Score=44.58 Aligned_cols=141 Identities=8% Similarity=-0.067 Sum_probs=73.1
Q ss_pred cCcccCcHHHHHHHHHHccC-----CCCCCCCHH---HHHHHHHHHHhcCCCCCcEEEeCCCC--CHH------hHHHHH
Q psy11031 13 DFPSHRNPLKMFNLFVSEEV-----KDFSFLSSK---TVTEVLMLEMKMSPAAKAFLISGYPR--NMR------DVVEYS 76 (520)
Q Consensus 13 ~~~~h~s~G~~l~~~i~~G~-----~~g~lVPde---lv~~ll~~~l~~~~~~~G~ILDGFPR--t~~------QA~~~~ 76 (520)
++. +++.|+.++....... +.-.-+|.+ -+..+..+++.+......+||||..- |.. ....+
T Consensus 29 ~~~-~~~~g~~~~~~a~~~g~~~~~d~~r~l~~~~~~~~~~~a~~~i~~~~~~~~~~~~~h~~i~~~~g~~~~~~~~~~- 106 (188)
T PRK04040 29 DYK-IVNFGDVMLEVAKEEGLVEHRDEMRKLPPEEQKELQREAAERIAEMAGEGPVIVDTHATIKTPAGYLPGLPEWVL- 106 (188)
T ss_pred CCe-EEecchHHHHHHHHcCCCCCHHHHhhCChhhhHHHHHHHHHHHHHhhcCCCEEEeeeeeeccCCCCcCCCCHHHH-
Confidence 455 7888998776654432 000001111 12223344444323344589998321 111 22122
Q ss_pred HhcCCcCEEEEEEcCHHHHHHHhhhCccCCcc--chHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHH
Q psy11031 77 DKIKTINGVILIAWRQSLLERQIDYGAKLGHV--ILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFR 154 (520)
Q Consensus 77 ~~~~~pd~VI~L~~pd~~l~~Rl~rg~~~~r~--d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~ 154 (520)
. ...||++|+|.++-+++.+|..+...-+|. +.+.+..|++.-.....- ..+|...-.++.+|-+...++-+.++.
T Consensus 107 ~-~l~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~es~e~I~~~~~~a~~~a~~-~a~~~g~~~~iI~N~d~~~e~a~~~i~ 184 (188)
T PRK04040 107 E-ELNPDVIVLIEADPDEILMRRLRDETRRRDVETEEDIEEHQEMNRAAAMA-YAVLTGATVKIVENREGLLEEAAEEIV 184 (188)
T ss_pred h-hcCCCEEEEEeCCHHHHHHHHhcccccCCCCCCHHHHHHHHHHHHHHHHH-HHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 2 248999999999977655444221111232 466777776654442221 223333334566776666888888887
Q ss_pred HHH
Q psy11031 155 TAV 157 (520)
Q Consensus 155 ~~l 157 (520)
++|
T Consensus 185 ~ii 187 (188)
T PRK04040 185 EVL 187 (188)
T ss_pred HHh
Confidence 765
No 340
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.99 E-value=0.1 Score=51.59 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=19.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHH
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVL 246 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La 246 (520)
....++|.|+|||||||+|.+++
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~ 45 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLA 45 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34589999999999999986554
No 341
>PRK13976 thymidylate kinase; Provisional
Probab=93.96 E-value=2.3 Score=41.39 Aligned_cols=141 Identities=8% Similarity=-0.042 Sum_probs=75.2
Q ss_pred cccCcccCcHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHh---c---C--CCCCcEEEeCCCCCHH------------
Q psy11031 11 LLDFPSHRNPLKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMK---M---S--PAAKAFLISGYPRNMR------------ 70 (520)
Q Consensus 11 ~~~~~~h~s~G~~l~~~i~~G~~~g~lVPdelv~~ll~~~l~---~---~--~~~~G~ILDGFPRt~~------------ 70 (520)
+...|.++.+|+.++.++.... .+=|-....=....|.. + + ...+-+|.|-|--+--
T Consensus 35 ~~~eP~~~~~g~~ir~~l~~~~---~~~~~~~~llf~a~R~~~~~~~I~p~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~ 111 (209)
T PRK13976 35 LTREPGGTSFNELVRGLLLSLK---NLDKISELLLFIAMRREHFVKVILPALLQGKIVICDRFIDSTIAYQGYGCGVDLS 111 (209)
T ss_pred EeeCCCCCHHHHHHHHHHcCCc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCcCHHHHhccccCCCCHH
Confidence 3346677889999999887522 12222221111111111 0 0 1234467777764421
Q ss_pred hHHHHHH--hcCCcCEEEEEEcCHHHHHHHhhhCccCCccchHHHHHHHHHHHhccchHHHHhhhCCcEEEEeC---CCC
Q psy11031 71 DVVEYSD--KIKTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNG---ERN 145 (520)
Q Consensus 71 QA~~~~~--~~~~pd~VI~L~~pd~~l~~Rl~rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida---~~~ 145 (520)
-...+.. ....||++|+|++|-+++.+|+..... ...+.+-..+--+.|.+- .+.|. ..++.||+ .++
T Consensus 112 ~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~~~~-e~~~~~~l~~v~~~Y~~l----~~~~~--~~~~~id~~~~~~~ 184 (209)
T PRK13976 112 LIRDLNDLVVDKYPDITFVLDIDIELSLSRADKNGY-EFMDLEFYDKVRKGFREI----VIKNP--HRCHVITCIDAKDN 184 (209)
T ss_pred HHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhcccch-hcccHHHHHHHHHHHHHH----HHhCC--CCeEEEECCCCccC
Confidence 1111111 123699999999999999999842111 011122222222233222 11122 24778898 456
Q ss_pred ---hHHHHHHHHHHHHHHh
Q psy11031 146 ---PVEVYADFRTAVLKIL 161 (520)
Q Consensus 146 ---~eeV~~~i~~~l~~~~ 161 (520)
+++|.++|.+.+...+
T Consensus 185 ~~~~e~v~~~i~~~i~~~~ 203 (209)
T PRK13976 185 IEDINSVHLEIVKLLHAVT 203 (209)
T ss_pred cCCHHHHHHHHHHHHHHHH
Confidence 9999999999998776
No 342
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=93.95 E-value=0.056 Score=59.80 Aligned_cols=31 Identities=10% Similarity=0.270 Sum_probs=26.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeeee
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQIS 256 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is 256 (520)
..+++|.|||||||||..+.||+.+ |+..+.
T Consensus 45 ~~iLlLtGP~G~GKtttv~~La~el-g~~v~E 75 (519)
T PF03215_consen 45 KRILLLTGPSGCGKTTTVKVLAKEL-GFEVQE 75 (519)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh-CCeeEE
Confidence 4578889999999999999999997 886653
No 343
>PRK04328 hypothetical protein; Provisional
Probab=93.94 E-value=0.12 Score=51.72 Aligned_cols=24 Identities=42% Similarity=0.587 Sum_probs=20.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQ 247 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~ 247 (520)
....++|.|+||||||++|..++.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~ 45 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLW 45 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 456799999999999999987654
No 344
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.89 E-value=0.13 Score=51.10 Aligned_cols=121 Identities=13% Similarity=0.229 Sum_probs=69.5
Q ss_pred CCCCCeEEEEEcCCCCChhHHHHHHHhhCC---CCeeeehhhHHhhhhc---cccc-------C----C--cchHHHHhh
Q psy11031 221 ERNTPLVVWVVGGPGSSKSEMCQKVLQDYP---NWTQISLGKLLRYFAN---IEDD-------G----E--GLNSRIKSS 281 (520)
Q Consensus 221 ~~~~p~~I~vlG~PGSGKsT~a~~La~k~~---g~~~is~gdLlr~~~~---~~~~-------~----t--~~g~~i~~~ 281 (520)
.-.+..+..|+||.||||||+.+.|.-... |-..+.-.++-.-... ++.. + + ...+-+.=.
T Consensus 30 ~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafp 109 (263)
T COG1127 30 DVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFP 109 (263)
T ss_pred eecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhhee
Confidence 345678899999999999999998864321 2222222222110000 0000 0 0 011111112
Q ss_pred hhcCCccchHHHHHHHHHHHhccccCCCcEEEEeCCCCCHH----HHHHHHhhcCCCCCEEEecCCh
Q psy11031 282 VSAGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMS----QLIDFENKYQIHPPMILIDCSK 344 (520)
Q Consensus 282 l~~G~~vPd~lv~~ll~~~l~~~~~~~~~G~ILDGFPrt~~----Qae~l~~~~~~p~~VI~Ld~~~ 344 (520)
+.+-..+|..++.+++...|+ ...-++-+.|-||..+. ---.|.+++...|.++++|=|.
T Consensus 110 lre~~~lp~~~i~~lv~~KL~---~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPt 173 (263)
T COG1127 110 LREHTKLPESLIRELVLMKLE---LVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPT 173 (263)
T ss_pred hHhhccCCHHHHHHHHHHHHH---hcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCC
Confidence 223335788889999888888 22346778999998743 3345556666667888888654
No 345
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=93.87 E-value=0.036 Score=53.93 Aligned_cols=21 Identities=48% Similarity=0.726 Sum_probs=19.6
Q ss_pred EEEEcCCCCChhHHHHHHHhh
Q psy11031 228 VWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 228 I~vlG~PGSGKsT~a~~La~k 248 (520)
|+|.|+|||||||..+.+.+.
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~ 21 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKD 21 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHh
Confidence 689999999999999999987
No 346
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.85 E-value=0.055 Score=62.46 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=30.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeee--hhhHHh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQIS--LGKLLR 262 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is--~gdLlr 262 (520)
..|.-|++.||||||||++|+.|+... +...++ ..+++.
T Consensus 485 ~~~~giLL~GppGtGKT~lakalA~e~-~~~fi~v~~~~l~~ 525 (733)
T TIGR01243 485 RPPKGVLLFGPPGTGKTLLAKAVATES-GANFIAVRGPEILS 525 (733)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhc-CCCEEEEehHHHhh
Confidence 345669999999999999999999986 666554 445555
No 347
>PRK06921 hypothetical protein; Provisional
Probab=93.80 E-value=0.1 Score=52.77 Aligned_cols=38 Identities=13% Similarity=0.162 Sum_probs=27.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCC-----CCeeeehhhHHh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYP-----NWTQISLGKLLR 262 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~-----g~~~is~gdLlr 262 (520)
...++|.|+||+|||+++..|+.... ...+++..+++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~ 159 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFG 159 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHH
Confidence 35699999999999999999887531 224556656655
No 348
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=93.80 E-value=0.037 Score=59.20 Aligned_cols=33 Identities=30% Similarity=0.554 Sum_probs=27.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR 262 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr 262 (520)
..=|+|-|+||+||||.|+.||+-| .+.|.+.+
T Consensus 263 aeGILIAG~PGaGKsTFaqAlAefy-----~~~GkiVK 295 (604)
T COG1855 263 AEGILIAGAPGAGKSTFAQALAEFY-----ASQGKIVK 295 (604)
T ss_pred hcceEEecCCCCChhHHHHHHHHHH-----HhcCcEEe
Confidence 3449999999999999999999977 55666665
No 349
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=93.79 E-value=0.088 Score=57.04 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
...|++.|+||+|||++|++|+..+
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l 218 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLL 218 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999999875
No 350
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=93.79 E-value=0.054 Score=47.71 Aligned_cols=23 Identities=26% Similarity=0.569 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHhh
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k 248 (520)
.+|+++|.+||||||+...|...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~ 24 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGN 24 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999998764
No 351
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=93.78 E-value=0.044 Score=60.88 Aligned_cols=25 Identities=16% Similarity=0.401 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
.++++++||||+||||+|+.|++.+
T Consensus 103 ~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 103 KQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred CceEEEecCCCCCchHHHHHHHHHH
Confidence 4689999999999999999999854
No 352
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.77 E-value=0.12 Score=55.24 Aligned_cols=26 Identities=15% Similarity=0.273 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
.|.+|+|+|++||||||.+.+|+..+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 46789999999999999999998654
No 353
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=93.77 E-value=0.16 Score=50.30 Aligned_cols=157 Identities=15% Similarity=0.200 Sum_probs=77.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeee---ehhhHHhhhhcccccCCcchHHHHhhhhcCCc--cchHHHHHHHH
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI---SLGKLLRYFANIEDDGEGLNSRIKSSVSAGDF--VNRDVVLDIVY 298 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i---s~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~--vPd~lv~~ll~ 298 (520)
.|.+|+|.|..||||+...+.|.+.+ .=.++ +.+.=-. ++ ....-++.--+.+=..|+. .-......++.
T Consensus 30 ~~vlIl~eG~d~sGKg~~I~~l~~~l-DPR~~~v~~~~~pt~---eE-~~~p~lwRfw~~lP~~G~I~if~rSWY~~~l~ 104 (228)
T PF03976_consen 30 IPVLILFEGWDASGKGGTINRLIEWL-DPRGFRVHAFGKPTD---EE-LRRPFLWRFWRALPARGQIGIFDRSWYEDVLV 104 (228)
T ss_dssp HEEEEEEEESTTSSHHHHHHHHHCCS--GGGEEEEE-SS--H---HH-HTS-TTHHHHTTS--TT-EEEEES-GGGGGTH
T ss_pred CcEEEEEeccccCCchHHHHHHHHhC-CCCeeEEEeCCCCCh---hH-cCCCcHHHHHHhCCCCCEEEEEecchhhHHHH
Confidence 46889999999999999999999875 33333 3321111 11 0111111111111112221 11123333334
Q ss_pred HHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCE---EEecCChhhhhc----------cCCCCCHHHH--HHHH
Q psy11031 299 AEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPM---ILIDCSKLVLHK----------GQIDNSVSAF--RRRL 363 (520)
Q Consensus 299 ~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~V---I~Ld~~~~~~~r----------~R~dD~~e~~--~~Rl 363 (520)
.++. .. +.. ..|.+.++++..||+.+.....+ |||.++.+...+ ++-.-++.-+ .+.+
T Consensus 105 ~rv~--~~-~~~----~~~~~~~~~I~~FEr~L~~~G~~IiKfflhIsk~eQ~kRl~~~~~~p~~~wkv~~~D~~~~~~y 177 (228)
T PF03976_consen 105 ERVE--GF-IDE----AEWERRLEEINRFERMLADDGTLIIKFFLHISKKEQKKRLKEREEDPLKRWKVSPEDWEQRKHY 177 (228)
T ss_dssp HHHT--TS-STH----HHHHHHHHHHHHHHHHHHHTTEEEEEEEEE--HHHHHHHHHHHHHSCCCGGG--HHHHHHHCCH
T ss_pred HHHh--cC-CCH----HHHHHHHHHHHHHHHHHHHCCCeEEEEEEEeCHHHHHHHHHHHhcCccccccCCHHHHHHHhhH
Confidence 4444 11 100 11455678889999988755543 678888864321 1111133333 3457
Q ss_pred HHHHHHhHHHHHHhhh-CCCEEEEECCCCH
Q psy11031 364 ELFRERTLPMLRAMDV-ETRLTIVDGDTQL 392 (520)
Q Consensus 364 ~~f~~~~~~l~~~y~~-~~~l~~IDa~~~~ 392 (520)
..|.+....+++.=+. ..-+++|+|+...
T Consensus 178 d~y~~a~~~~l~~T~t~~APW~iI~a~dk~ 207 (228)
T PF03976_consen 178 DRYQKAYEEMLERTDTPYAPWHIIPADDKR 207 (228)
T ss_dssp HHHHHHHHHHHHHH-BSSS-EEEEE-SSHH
T ss_pred HHHHHHHHHHHhccCCCCCCeEEEeCCCHH
Confidence 7888877777764432 3569999999764
No 354
>KOG1969|consensus
Probab=93.76 E-value=0.067 Score=60.30 Aligned_cols=36 Identities=14% Similarity=0.427 Sum_probs=30.6
Q ss_pred CCCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeeh
Q psy11031 221 ERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISL 257 (520)
Q Consensus 221 ~~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~ 257 (520)
..+.-++.+++||||-||||+|.-||+.- |+..+.+
T Consensus 322 ~RP~kKilLL~GppGlGKTTLAHViAkqa-GYsVvEI 357 (877)
T KOG1969|consen 322 KRPPKKILLLCGPPGLGKTTLAHVIAKQA-GYSVVEI 357 (877)
T ss_pred CCCccceEEeecCCCCChhHHHHHHHHhc-CceEEEe
Confidence 34455788899999999999999999986 9988866
No 355
>CHL00176 ftsH cell division protein; Validated
Probab=93.72 E-value=0.062 Score=60.93 Aligned_cols=34 Identities=24% Similarity=0.402 Sum_probs=28.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeeh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISL 257 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~ 257 (520)
..|+-|++.||||+|||++|+.|+... +.+.+++
T Consensus 214 ~~p~gVLL~GPpGTGKT~LAralA~e~-~~p~i~i 247 (638)
T CHL00176 214 KIPKGVLLVGPPGTGKTLLAKAIAGEA-EVPFFSI 247 (638)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh-CCCeeec
Confidence 446679999999999999999999986 7666544
No 356
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=93.72 E-value=0.055 Score=49.30 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k 248 (520)
+|+|+|++||||||+++++...
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999764
No 357
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.71 E-value=0.039 Score=54.97 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=29.2
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR 262 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr 262 (520)
-...-++.|+||.||||||+.+.|+ |+..-+.|.+.-
T Consensus 26 v~~GEfvsilGpSGcGKSTLLriiA----GL~~p~~G~V~~ 62 (248)
T COG1116 26 VEKGEFVAILGPSGCGKSTLLRLIA----GLEKPTSGEVLL 62 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHh----CCCCCCCceEEE
Confidence 3456789999999999999999987 566666666443
No 358
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=93.66 E-value=0.058 Score=48.01 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
...++.|+|+.||||||+.+.|+..+
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEccCCCccccceeeecccc
Confidence 45689999999999999999997654
No 359
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=93.66 E-value=0.069 Score=52.19 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=27.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhC----CCCeeeehhhHHh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDY----PNWTQISLGKLLR 262 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~----~g~~~is~gdLlr 262 (520)
...++|.|++|||||++|+.++... ..+.++++.++..
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~ 83 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL 83 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH
Confidence 4568999999999999999998752 1445566655443
No 360
>PRK06893 DNA replication initiation factor; Validated
Probab=93.65 E-value=0.054 Score=53.42 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
.+.+++.|+||+|||+++..++..
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~ 62 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH 62 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999865
No 361
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.64 E-value=0.052 Score=55.37 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
.+.+|+|+||.||||||.+.+|+..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998754
No 362
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.64 E-value=0.054 Score=58.43 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
..|.+|+++|++||||||.|.+||..
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~ 123 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYY 123 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999854
No 363
>PRK08116 hypothetical protein; Validated
Probab=93.63 E-value=0.14 Score=51.81 Aligned_cols=36 Identities=14% Similarity=0.224 Sum_probs=28.4
Q ss_pred EEEEEcCCCCChhHHHHHHHhhC----CCCeeeehhhHHh
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDY----PNWTQISLGKLLR 262 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~----~g~~~is~gdLlr 262 (520)
-++|.|++|+|||.+|..|+..+ ..+.+++..+++.
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~ 155 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLN 155 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence 48999999999999999998752 1445667777776
No 364
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.59 E-value=0.068 Score=46.68 Aligned_cols=36 Identities=14% Similarity=0.246 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR 262 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr 262 (520)
....+.|.|++||||||+++.+. . |-..+.-.++..
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~-~--G~i~~~g~di~~ 49 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI-K--RKHRLVGDDNVE 49 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh-C--CeEEEeeEeHHH
Confidence 35789999999999999999987 2 334444444433
No 365
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.58 E-value=0.049 Score=51.07 Aligned_cols=20 Identities=30% Similarity=0.640 Sum_probs=18.0
Q ss_pred EEEEcCCCCChhHHHHHHHh
Q psy11031 228 VWVVGGPGSSKSEMCQKVLQ 247 (520)
Q Consensus 228 I~vlG~PGSGKsT~a~~La~ 247 (520)
++|.|+||||||++|.+++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~ 21 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLY 21 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999988764
No 366
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=93.58 E-value=0.06 Score=48.49 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k 248 (520)
+|+|+|.+|+||||++.++...
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 367
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.56 E-value=0.059 Score=55.57 Aligned_cols=36 Identities=22% Similarity=0.442 Sum_probs=27.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCC------CCeeeehhhHH
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYP------NWTQISLGKLL 261 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~------g~~~is~gdLl 261 (520)
+.++|.||||+||||+|+.+++.+. .+.++++.++.
T Consensus 37 ~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~ 78 (337)
T PRK12402 37 PHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFF 78 (337)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhh
Confidence 4589999999999999999988752 13456665554
No 368
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=93.53 E-value=0.052 Score=48.79 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k 248 (520)
+|+|+|++||||||+..++...
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998753
No 369
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.49 E-value=0.066 Score=50.94 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
....++|.|++||||||+.+.|+..+
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 35689999999999999999988754
No 370
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=93.46 E-value=0.062 Score=48.67 Aligned_cols=22 Identities=18% Similarity=0.413 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k 248 (520)
+|+|+|.|||||||+++++...
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999754
No 371
>PF13479 AAA_24: AAA domain
Probab=93.45 E-value=0.065 Score=52.23 Aligned_cols=31 Identities=26% Similarity=0.501 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLG 258 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~g 258 (520)
.+.+++|.|+||+||||+|..+ ++..+|+++
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~----~k~l~id~E 32 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL----PKPLFIDTE 32 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC----CCeEEEEeC
Confidence 4678999999999999999976 355677764
No 372
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.45 E-value=0.046 Score=49.32 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=19.0
Q ss_pred EEEEcCCCCChhHHHHHHHhhCCCCee
Q psy11031 228 VWVVGGPGSSKSEMCQKVLQDYPNWTQ 254 (520)
Q Consensus 228 I~vlG~PGSGKsT~a~~La~k~~g~~~ 254 (520)
+++.|+||.||||+++.||+.. |...
T Consensus 2 vLleg~PG~GKT~la~~lA~~~-~~~f 27 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL-GLSF 27 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT-T--E
T ss_pred EeeECCCccHHHHHHHHHHHHc-CCce
Confidence 7899999999999999999986 6644
No 373
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=93.45 E-value=0.1 Score=49.57 Aligned_cols=38 Identities=21% Similarity=0.352 Sum_probs=28.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHh-----hCCCCeeeehhhHHh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQ-----DYPNWTQISLGKLLR 262 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~-----k~~g~~~is~gdLlr 262 (520)
...-+++.|+||+|||.+|..|+. .+ ...++++.+|+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~-~v~f~~~~~L~~ 88 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGY-SVLFITASDLLD 88 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT---EEEEEHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCc-ceeEeecCceec
Confidence 346799999999999999998875 23 456778888887
No 374
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=93.43 E-value=0.068 Score=53.32 Aligned_cols=26 Identities=23% Similarity=0.487 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
..|-+++|+|++||||||++..|...
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 45678999999999999988887653
No 375
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=93.40 E-value=0.066 Score=48.52 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k 248 (520)
+|+|+|.+|+||||++.++...
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999865
No 376
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=93.38 E-value=0.089 Score=47.13 Aligned_cols=30 Identities=13% Similarity=0.240 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCe
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWT 253 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~ 253 (520)
+...+|++.|.-||||||+++.|++.+ |..
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~l-g~~ 42 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARAL-GID 42 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHT-T--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc-CCC
Confidence 346789999999999999999999987 764
No 377
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=93.34 E-value=0.17 Score=49.78 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQ 247 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~ 247 (520)
+..-.++|.|+||||||++|..++.
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~ 47 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVY 47 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHH
Confidence 3467899999999999999999864
No 378
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=93.32 E-value=0.067 Score=56.35 Aligned_cols=38 Identities=16% Similarity=0.409 Sum_probs=30.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCC----CeeeehhhHHh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPN----WTQISLGKLLR 262 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g----~~~is~gdLlr 262 (520)
...-|++.||||||||.+|-.|++.+ | |.+++-.+++.
T Consensus 49 aGr~iLiaGppGtGKTAlA~~ia~eL-G~~~PF~~isgSEiyS 90 (398)
T PF06068_consen 49 AGRAILIAGPPGTGKTALAMAIAKEL-GEDVPFVSISGSEIYS 90 (398)
T ss_dssp TT-EEEEEE-TTSSHHHHHHHHHHHC-TTTS-EEEEEGGGG-B
T ss_pred cCcEEEEeCCCCCCchHHHHHHHHHh-CCCCCeeEcccceeee
Confidence 35789999999999999999999985 5 67788888877
No 379
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=93.31 E-value=0.061 Score=51.76 Aligned_cols=38 Identities=34% Similarity=0.560 Sum_probs=26.4
Q ss_pred CCC-eEEEEEcCCCCChhHHHHHHHh----hCCCCeeeehhhHHh
Q psy11031 223 NTP-LVVWVVGGPGSSKSEMCQKVLQ----DYPNWTQISLGKLLR 262 (520)
Q Consensus 223 ~~p-~~I~vlG~PGSGKsT~a~~La~----k~~g~~~is~gdLlr 262 (520)
.+| .+|-|.||||||||++..++.+ +| .+..|.- |++.
T Consensus 10 ~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~~-~~aVI~~-Di~t 52 (202)
T COG0378 10 NRPMLRIGVGGPPGSGKTALIEKTLRALKDEY-KIAVITG-DIYT 52 (202)
T ss_pred cCceEEEEecCCCCcCHHHHHHHHHHHHHhhC-CeEEEec-eeec
Confidence 445 7899999999999999776554 44 5555543 4443
No 380
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=93.30 E-value=0.068 Score=56.61 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
.+|.+|+|+|.+||||||++++|..++
T Consensus 3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l 29 (369)
T PRK14490 3 FHPFEIAFCGYSGSGKTTLITALVRRL 29 (369)
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999999876
No 381
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=93.30 E-value=0.07 Score=54.88 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=23.3
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
...+.+|.|.|+|||||||++..|+..
T Consensus 31 ~~~~~~i~i~G~~G~GKttl~~~l~~~ 57 (300)
T TIGR00750 31 TGNAHRVGITGTPGAGKSTLLEALGME 57 (300)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 456789999999999999999998764
No 382
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=93.29 E-value=0.07 Score=47.42 Aligned_cols=22 Identities=14% Similarity=0.410 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k 248 (520)
+|+++|+|||||||++..+...
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~ 23 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDG 23 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998654
No 383
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.28 E-value=0.21 Score=52.88 Aligned_cols=26 Identities=35% Similarity=0.698 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
..+..++|.|+||+|||++++.+++.
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~~~v~~~ 78 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTVKKVFEE 78 (394)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999999864
No 384
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=93.27 E-value=0.074 Score=61.82 Aligned_cols=35 Identities=26% Similarity=0.446 Sum_probs=27.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCee--eehhh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQ--ISLGK 259 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~--is~gd 259 (520)
..+.+++.||||+|||++|+.|++.+ +... ++++.
T Consensus 346 ~~~~lll~GppG~GKT~lAk~iA~~l-~~~~~~i~~~~ 382 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGKSIAKAL-NRKFVRFSLGG 382 (775)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh-cCCeEEEeCCC
Confidence 45689999999999999999999986 6544 44443
No 385
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.27 E-value=0.077 Score=61.27 Aligned_cols=39 Identities=21% Similarity=0.302 Sum_probs=30.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeee--ehhhHHh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI--SLGKLLR 262 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i--s~gdLlr 262 (520)
..|.-|+|.|||||||||+|+.|+..+ +...+ +..+++.
T Consensus 210 ~~~~giLL~GppGtGKT~laraia~~~-~~~~i~i~~~~i~~ 250 (733)
T TIGR01243 210 EPPKGVLLYGPPGTGKTLLAKAVANEA-GAYFISINGPEIMS 250 (733)
T ss_pred CCCceEEEECCCCCChHHHHHHHHHHh-CCeEEEEecHHHhc
Confidence 446679999999999999999999986 66554 4444444
No 386
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=93.26 E-value=0.079 Score=50.98 Aligned_cols=25 Identities=24% Similarity=0.502 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQ 247 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~ 247 (520)
+....+.|.|+||||||++|..++.
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~ 34 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAV 34 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999998875
No 387
>PTZ00202 tuzin; Provisional
Probab=93.26 E-value=0.4 Score=51.94 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=25.7
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCe
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWT 253 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~ 253 (520)
...|.++.|.|++|+||||+|+.+..+. +..
T Consensus 283 ~~~privvLtG~~G~GKTTLlR~~~~~l-~~~ 313 (550)
T PTZ00202 283 TAHPRIVVFTGFRGCGKSSLCRSAVRKE-GMP 313 (550)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhcC-Cce
Confidence 3346699999999999999999999876 543
No 388
>PRK13695 putative NTPase; Provisional
Probab=93.23 E-value=0.073 Score=49.87 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k 248 (520)
+|+|.|++||||||+++.|+..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999997654
No 389
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.22 E-value=0.15 Score=56.02 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
...-.++|.|+||+||||+|.+++..
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~ 286 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLEN 286 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999988763
No 390
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=93.21 E-value=0.074 Score=48.22 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHhh
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k 248 (520)
.+|+|+|.||+||||++.++...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~ 24 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQG 24 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999998854
No 391
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.16 E-value=0.096 Score=47.07 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=26.6
Q ss_pred CCCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 221 ERNTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 221 ~~~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
.+.+|.++.+.|++|+||+.+++.||+.+
T Consensus 49 ~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 49 NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 57789999999999999999999999973
No 392
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=93.15 E-value=0.075 Score=48.29 Aligned_cols=22 Identities=18% Similarity=0.487 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k 248 (520)
+|+|+|++|+||||++.+|...
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~ 23 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVEN 23 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999998753
No 393
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.15 E-value=0.75 Score=45.11 Aligned_cols=35 Identities=11% Similarity=0.162 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhC-----CCCeeeehh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDY-----PNWTQISLG 258 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~-----~g~~~is~g 258 (520)
+...++|.|+||+|||++|..++-.. ....++|+.
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E 51 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE 51 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 45689999999999999988775431 145566653
No 394
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.13 E-value=1.2 Score=44.35 Aligned_cols=95 Identities=7% Similarity=-0.014 Sum_probs=61.1
Q ss_pred CcEEEeCCCCCHHhHH---HHHHhcCCcCEEEEEEcCHHHHHHHhh-hCccCCccchHHHHHHHHHHHhccchHHHHhhh
Q psy11031 58 KAFLISGYPRNMRDVV---EYSDKIKTINGVILIAWRQSLLERQID-YGAKLGHVILSLARMELANFYQNVTPVTDFFDQ 133 (520)
Q Consensus 58 ~G~ILDGFPRt~~QA~---~~~~~~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~ 133 (520)
..+|+||......... ++......+.++|+|+||.+.+.+|.. |+. ....+.+.+.+..|..- ...|+ .
T Consensus 69 ~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~---~~~~~~i~~l~~r~e~p---~~~~~-w 141 (249)
T TIGR03574 69 YSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGE---KIPNEVIKDMYEKFDEP---GTKYS-W 141 (249)
T ss_pred CeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCC---CCCHHHHHHHHHhhCCC---CCCCC-c
Confidence 4589999765543332 223344567789999999999999984 432 22355666655555432 22332 2
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHH
Q psy11031 134 RGMLIAVNGER--NPVEVYADFRTAVLK 159 (520)
Q Consensus 134 ~~~l~~Ida~~--~~eeV~~~i~~~l~~ 159 (520)
...+++||++. +.+++++.|...+..
T Consensus 142 d~~~~~vd~~~~~~~~ei~~~i~~~~~~ 169 (249)
T TIGR03574 142 DLPDLTIDTTKKIDYNEILEEILEISEN 169 (249)
T ss_pred cCceEEecCCCCCCHHHHHHHHHHHhhc
Confidence 22578899876 678999999887754
No 395
>KOG1532|consensus
Probab=93.13 E-value=0.08 Score=53.47 Aligned_cols=42 Identities=26% Similarity=0.365 Sum_probs=30.6
Q ss_pred CCCCCeEEEEEcCCCCChhHHHHHHHhhCC----CCeeeehhhHHh
Q psy11031 221 ERNTPLVVWVVGGPGSSKSEMCQKVLQDYP----NWTQISLGKLLR 262 (520)
Q Consensus 221 ~~~~p~~I~vlG~PGSGKsT~a~~La~k~~----g~~~is~gdLlr 262 (520)
...+|++|+|+|..||||||.+++|..... ..-.|.++--++
T Consensus 15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~ 60 (366)
T KOG1532|consen 15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVR 60 (366)
T ss_pred cccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHh
Confidence 356789999999999999999999866431 123455555555
No 396
>PRK08084 DNA replication initiation factor; Provisional
Probab=93.11 E-value=0.082 Score=52.37 Aligned_cols=25 Identities=8% Similarity=0.226 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
...+++.||+|||||+++..++...
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~ 69 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAEL 69 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999888653
No 397
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=93.10 E-value=0.08 Score=51.06 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
....++.|+|+.||||||+++.|+..+
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456789999999999999999998643
No 398
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.09 E-value=0.061 Score=49.99 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHHhhC
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
+|.|+|++||||||++.+|.+.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998863
No 399
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=93.08 E-value=0.072 Score=49.77 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
++|.|+|++||||||++++|...+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l 25 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPAL 25 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999874
No 400
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=93.07 E-value=0.076 Score=48.58 Aligned_cols=22 Identities=18% Similarity=0.437 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k 248 (520)
+|+|+|++||||||++.++...
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999988754
No 401
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=93.07 E-value=0.083 Score=50.14 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....++.|+|+.||||||+++.|+..
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34678999999999999999999754
No 402
>PLN03025 replication factor C subunit; Provisional
Probab=93.06 E-value=0.075 Score=55.05 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
+.+++.||||+||||+|..+++.+
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 458899999999999999999875
No 403
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=93.06 E-value=0.083 Score=61.35 Aligned_cols=36 Identities=22% Similarity=0.382 Sum_probs=29.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCee--eehhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQ--ISLGK 259 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~--is~gd 259 (520)
.+.++++++||||+||||+++.|++.+ +... ++++.
T Consensus 347 ~~g~~i~l~GppG~GKTtl~~~ia~~l-~~~~~~i~~~~ 384 (784)
T PRK10787 347 IKGPILCLVGPPGVGKTSLGQSIAKAT-GRKYVRMALGG 384 (784)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh-CCCEEEEEcCC
Confidence 356789999999999999999999886 7655 44444
No 404
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=93.06 E-value=0.089 Score=51.01 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....+++|.|+|||||||+|..++..
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~ 42 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVE 42 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999999998854
No 405
>PRK13768 GTPase; Provisional
Probab=93.02 E-value=0.07 Score=53.57 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
+..|+|.|++||||||+|..++..+
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l 26 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWL 26 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHH
Confidence 4679999999999999999888654
No 406
>COG4240 Predicted kinase [General function prediction only]
Probab=93.02 E-value=0.11 Score=51.13 Aligned_cols=40 Identities=28% Similarity=0.358 Sum_probs=31.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHH----HhhC-CCCeeeehhhHHh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKV----LQDY-PNWTQISLGKLLR 262 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~L----a~k~-~g~~~is~gdLlr 262 (520)
..|.++.|+||-||||||++..| ++++ .....+|++|++.
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYl 92 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYL 92 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhc
Confidence 45899999999999999999765 4443 1457789999987
No 407
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.02 E-value=0.088 Score=50.93 Aligned_cols=28 Identities=21% Similarity=0.502 Sum_probs=24.8
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
...+++|.|.|++||||||+.+++.+.+
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999999998874
No 408
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=93.01 E-value=0.085 Score=51.12 Aligned_cols=27 Identities=26% Similarity=0.155 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
....++.|+|+.||||||+++.|+..+
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 456789999999999999999998643
No 409
>KOG0735|consensus
Probab=92.98 E-value=0.11 Score=58.43 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=34.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehh--hHHh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLG--KLLR 262 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~g--dLlr 262 (520)
+.+.-|++.||||||||.+|..++..+ ++..||+. +||.
T Consensus 699 r~~~giLLyGppGcGKT~la~a~a~~~-~~~fisvKGPElL~ 739 (952)
T KOG0735|consen 699 RLRTGILLYGPPGCGKTLLASAIASNS-NLRFISVKGPELLS 739 (952)
T ss_pred ccccceEEECCCCCcHHHHHHHHHhhC-CeeEEEecCHHHHH
Confidence 445669999999999999999999997 99999986 7777
No 410
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.97 E-value=0.074 Score=56.45 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
...+++|+||+|+||||.+.+|+..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999875
No 411
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=92.95 E-value=0.099 Score=53.65 Aligned_cols=29 Identities=14% Similarity=0.302 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCC
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNW 252 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~ 252 (520)
..|..+++.|+||+||||+++.+++.. +.
T Consensus 41 ~~~~~lll~G~~G~GKT~la~~l~~~~-~~ 69 (316)
T PHA02544 41 RIPNMLLHSPSPGTGKTTVAKALCNEV-GA 69 (316)
T ss_pred CCCeEEEeeCcCCCCHHHHHHHHHHHh-Cc
Confidence 345667778999999999999999875 53
No 412
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.92 E-value=0.2 Score=55.14 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHh----hC-CCCeeeehh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQ----DY-PNWTQISLG 258 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~----k~-~g~~~is~g 258 (520)
+...++|.|+|||||||+|.+++- ++ -...+++..
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e 59 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE 59 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 467799999999999999998733 21 145566654
No 413
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=92.92 E-value=0.087 Score=53.05 Aligned_cols=28 Identities=18% Similarity=0.131 Sum_probs=24.2
Q ss_pred CCCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 221 ERNTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 221 ~~~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
.-+...++.|+||.||||||+.+.|+.-
T Consensus 24 ~i~~G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 24 SIPKGEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3455789999999999999999999874
No 414
>PRK08939 primosomal protein DnaI; Reviewed
Probab=92.89 E-value=0.37 Score=49.81 Aligned_cols=38 Identities=16% Similarity=0.242 Sum_probs=29.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhC----CCCeeeehhhHHh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDY----PNWTQISLGKLLR 262 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~----~g~~~is~gdLlr 262 (520)
.+-++|.|++|+|||.++..|+..+ .....+++.++++
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~ 197 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIR 197 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHH
Confidence 4569999999999999999998753 1334567777776
No 415
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=92.88 E-value=0.071 Score=55.69 Aligned_cols=38 Identities=18% Similarity=0.399 Sum_probs=32.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCC----CeeeehhhHHh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPN----WTQISLGKLLR 262 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g----~~~is~gdLlr 262 (520)
..+-|++.||||+|||-+|--|++.+ | |+-+|-++++.
T Consensus 64 aGrgiLi~GppgTGKTAlA~gIa~eL-G~dvPF~~isgsEiYS 105 (450)
T COG1224 64 AGRGILIVGPPGTGKTALAMGIAREL-GEDVPFVAISGSEIYS 105 (450)
T ss_pred cccEEEEECCCCCcHHHHHHHHHHHh-CCCCCceeeccceeee
Confidence 45779999999999999999999986 6 67778778877
No 416
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.87 E-value=0.097 Score=57.33 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCC
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNW 252 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~ 252 (520)
.|..+++.||||+||||+|+.+++.+ +.
T Consensus 35 l~~~~Lf~GPpGtGKTTlA~~lA~~l-~~ 62 (472)
T PRK14962 35 ISHAYIFAGPRGTGKTTVARILAKSL-NC 62 (472)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-cc
Confidence 45568999999999999999999986 54
No 417
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=92.87 E-value=0.09 Score=47.65 Aligned_cols=24 Identities=25% Similarity=0.602 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
+.+|+++|.+|+||||+...|...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~ 25 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGE 25 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCc
Confidence 568999999999999999999765
No 418
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=92.86 E-value=0.09 Score=50.90 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
....++.|+|+.||||||+.+.|+..+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999999999998643
No 419
>KOG1534|consensus
Probab=92.83 E-value=0.07 Score=51.96 Aligned_cols=46 Identities=11% Similarity=0.017 Sum_probs=30.1
Q ss_pred HHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH
Q psy11031 365 LFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDDL 410 (520)
Q Consensus 365 ~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~~~ 410 (520)
.|++..+.+...-++-+.+..+.-+.+-++-.+.|.+.|...++.-
T Consensus 208 Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQy~ 253 (273)
T KOG1534|consen 208 KFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQYG 253 (273)
T ss_pred HHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHHhc
Confidence 5666666666666665656666666666666777777777766543
No 420
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=92.83 E-value=0.09 Score=48.05 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k 248 (520)
+|+|+|.+||||||++.+|...
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~ 23 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTG 23 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999865
No 421
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.82 E-value=0.097 Score=53.62 Aligned_cols=28 Identities=29% Similarity=0.451 Sum_probs=24.3
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
......|.|+|+|||||||+.+.+...+
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999999888764
No 422
>CHL00206 ycf2 Ycf2; Provisional
Probab=92.81 E-value=0.1 Score=64.69 Aligned_cols=40 Identities=18% Similarity=0.234 Sum_probs=32.8
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCee--eehhhHHh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQ--ISLGKLLR 262 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~--is~gdLlr 262 (520)
...|+=|+++||||+|||.+|+.||... +++. ++..+++.
T Consensus 1627 l~pPKGILLiGPPGTGKTlLAKALA~es-~VPFIsISgs~fl~ 1668 (2281)
T CHL00206 1627 LSPSRGILVIGSIGTGRSYLVKYLATNS-YVPFITVFLNKFLD 1668 (2281)
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHHhc-CCceEEEEHHHHhh
Confidence 3557789999999999999999999985 6654 56668875
No 423
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.80 E-value=0.088 Score=54.25 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=24.6
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCeee
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQI 255 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~i 255 (520)
.|+++||.|||||.+|+-||+.+ +.+.-
T Consensus 99 NILLiGPTGsGKTlLAqTLAk~L-nVPFa 126 (408)
T COG1219 99 NILLIGPTGSGKTLLAQTLAKIL-NVPFA 126 (408)
T ss_pred cEEEECCCCCcHHHHHHHHHHHh-CCCee
Confidence 49999999999999999999986 76653
No 424
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=92.79 E-value=0.096 Score=51.75 Aligned_cols=26 Identities=27% Similarity=0.224 Sum_probs=22.2
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQ 247 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~ 247 (520)
-...-++.|+||.||||||+...|+-
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 34567899999999999999998863
No 425
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=92.78 E-value=0.097 Score=50.51 Aligned_cols=27 Identities=15% Similarity=0.115 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
....++.|+|+.||||||+++.|+..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999999999998643
No 426
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=92.78 E-value=0.091 Score=47.49 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k 248 (520)
+|+++|+|||||||+..++...
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~ 23 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYD 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998753
No 427
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=92.76 E-value=0.097 Score=57.24 Aligned_cols=27 Identities=33% Similarity=0.717 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
+.|.++.|+||||+||||+.+.|.++|
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~ 93 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRF 93 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHH
Confidence 334455599999999999999999886
No 428
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=92.74 E-value=0.097 Score=50.56 Aligned_cols=27 Identities=11% Similarity=0.281 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
....++.|+|+.||||||+++.|+..+
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 446789999999999999999998643
No 429
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.73 E-value=0.66 Score=52.57 Aligned_cols=29 Identities=14% Similarity=0.201 Sum_probs=24.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCC
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNW 252 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~ 252 (520)
+.+.-++|.|++|+||||+|+.|++.+ ++
T Consensus 36 RLpHA~LFtGP~GvGKTTLAriLAkaL-nC 64 (700)
T PRK12323 36 RLHHAYLFTGTRGVGKTTLSRILAKSL-NC 64 (700)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHh-cC
Confidence 345568999999999999999999987 55
No 430
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=92.72 E-value=0.11 Score=48.11 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
|+++|.|..||||||+.+.+.+..
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~~ 24 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTEQ 24 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhcc
Confidence 478999999999999999988764
No 431
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.72 E-value=0.1 Score=49.90 Aligned_cols=26 Identities=15% Similarity=0.287 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....++.|+|+.||||||+.+.|+..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999999754
No 432
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=92.69 E-value=0.095 Score=47.55 Aligned_cols=23 Identities=13% Similarity=0.365 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHhh
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k 248 (520)
-+|+|+|++||||||+++++...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKN 24 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999875
No 433
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=92.68 E-value=0.093 Score=51.50 Aligned_cols=27 Identities=11% Similarity=0.112 Sum_probs=23.0
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
-....++.|+|+.||||||+++.|+..
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 23 VRPGEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 345678999999999999999999754
No 434
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=92.68 E-value=0.12 Score=40.68 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHhh
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k 248 (520)
...+|.|+.||||||+...+.--
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999877543
No 435
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=92.67 E-value=0.31 Score=48.99 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=29.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCC--CC--eeeehhhHHh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYP--NW--TQISLGKLLR 262 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~--g~--~~is~gdLlr 262 (520)
.+.-+++.|+||+|||.+|..|+.+.. |+ ..+++.++++
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~ 146 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLS 146 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence 466799999999999999987766421 33 4567778887
No 436
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=92.66 E-value=0.082 Score=43.14 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHHHHHhhC
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
+|++.|.+|+||||+|..|+..+
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l 23 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAAL 23 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 37889999999999999998865
No 437
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=92.64 E-value=0.1 Score=50.08 Aligned_cols=27 Identities=19% Similarity=0.143 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
....++.|+|+.||||||+.+.|+..+
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 346789999999999999999998643
No 438
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=92.63 E-value=0.1 Score=50.24 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....++.|+|+.||||||+.+.|+..
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45678999999999999999999854
No 439
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=92.63 E-value=0.09 Score=55.10 Aligned_cols=26 Identities=15% Similarity=0.325 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
.-.+++++||+|+||||++++|.+.+
T Consensus 87 ~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 87 RKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHh
Confidence 34789999999999999999998754
No 440
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.62 E-value=0.1 Score=50.22 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....++.|+|+.||||||+.+.|+..
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45678999999999999999999854
No 441
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.59 E-value=0.099 Score=52.04 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=22.5
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQ 247 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~ 247 (520)
-.....++|+|++||||||+.+.|+-
T Consensus 27 i~~Ge~~~i~G~nGsGKSTL~~~l~G 52 (235)
T COG1122 27 IEKGERVLLIGPNGSGKSTLLKLLNG 52 (235)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcC
Confidence 34567899999999999999999875
No 442
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=92.59 E-value=0.11 Score=50.15 Aligned_cols=26 Identities=27% Similarity=0.244 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....++.|+|+.||||||+.+.|+..
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999999854
No 443
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=92.58 E-value=0.11 Score=50.81 Aligned_cols=28 Identities=14% Similarity=0.124 Sum_probs=23.8
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
-....++.|+|+.||||||+++.|+..+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 23 IPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3456789999999999999999998643
No 444
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=92.57 E-value=0.11 Score=50.51 Aligned_cols=26 Identities=12% Similarity=0.185 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
...-++.|+|+.||||||+.+.|+..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 44678999999999999999999854
No 445
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=92.57 E-value=0.11 Score=50.55 Aligned_cols=28 Identities=25% Similarity=0.181 Sum_probs=23.7
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
-....++.|+|+.||||||+.+.|+..+
T Consensus 28 i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 28 IGKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456789999999999999999998643
No 446
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.56 E-value=0.11 Score=51.19 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=23.7
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
-....++.|+|+.||||||+++.|+..+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 23 VRRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456789999999999999999998543
No 447
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=92.53 E-value=0.11 Score=51.14 Aligned_cols=27 Identities=22% Similarity=0.174 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
....++.|+|+.||||||+++.|+..+
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 446789999999999999999998643
No 448
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=92.53 E-value=0.11 Score=50.50 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=23.2
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
-....++.|+|+.||||||+++.|+..
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 23 VPEGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 345678999999999999999998754
No 449
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=92.51 E-value=0.11 Score=48.81 Aligned_cols=26 Identities=15% Similarity=0.377 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
.+..+|+++|++||||||+.++|...
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~ 37 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNG 37 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSS
T ss_pred CcEEEEEEECCCccchHHHHHHhhhc
Confidence 55688999999999999999999754
No 450
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=92.50 E-value=0.11 Score=48.78 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=23.1
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
-....++.|+|+.||||||+++.|+..
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 345678999999999999999999754
No 451
>KOG2004|consensus
Probab=92.48 E-value=0.099 Score=58.87 Aligned_cols=41 Identities=17% Similarity=0.383 Sum_probs=34.9
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCC-CCeeeehhhHHh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYP-NWTQISLGKLLR 262 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~-g~~~is~gdLlr 262 (520)
....+++++.||||.|||++++.||+.+- .|..+|+|-+-.
T Consensus 435 s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tD 476 (906)
T KOG2004|consen 435 SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTD 476 (906)
T ss_pred cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEecccccc
Confidence 35689999999999999999999999751 467889998876
No 452
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.47 E-value=0.11 Score=51.25 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....++.|+|+.||||||+++.|+..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45678999999999999999999854
No 453
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.45 E-value=0.11 Score=53.93 Aligned_cols=34 Identities=21% Similarity=0.329 Sum_probs=30.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeeh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISL 257 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~ 257 (520)
-.|+.|+++||.|.|||.+|++||+-- |.+.+.+
T Consensus 48 V~PKNILMIGpTGVGKTEIARRLAkl~-~aPFiKV 81 (444)
T COG1220 48 VTPKNILMIGPTGVGKTEIARRLAKLA-GAPFIKV 81 (444)
T ss_pred cCccceEEECCCCCcHHHHHHHHHHHh-CCCeEEE
Confidence 458999999999999999999999875 8887766
No 454
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=92.45 E-value=0.11 Score=46.78 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k 248 (520)
+|+|+|++|+||||++.++...
T Consensus 2 ki~i~G~~~~GKStli~~l~~~ 23 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVEN 23 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998864
No 455
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.44 E-value=0.11 Score=50.09 Aligned_cols=27 Identities=11% Similarity=0.140 Sum_probs=23.2
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
-....++.|+|+.||||||+++.|+..
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 23 VEPGEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 345678999999999999999999854
No 456
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.44 E-value=0.11 Score=51.40 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
....++.|+|+.||||||+++.|+..+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 27 EGGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 446789999999999999999998643
No 457
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=92.40 E-value=0.11 Score=50.56 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=23.9
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
-....++.|+|+.||||||+.+.|+..+
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 28 IKKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3457789999999999999999998543
No 458
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=92.40 E-value=0.51 Score=54.24 Aligned_cols=29 Identities=14% Similarity=0.168 Sum_probs=24.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCe
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWT 253 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~ 253 (520)
.+..++|.|++|+||||+++.|++.+ ++.
T Consensus 37 L~HAyLFtGPpGvGKTTlAriLAKaL-nCe 65 (830)
T PRK07003 37 LHHAYLFTGTRGVGKTTLSRIFAKAL-NCE 65 (830)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-cCc
Confidence 45567899999999999999999987 653
No 459
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=92.39 E-value=0.12 Score=49.01 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=27.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR 262 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr 262 (520)
...-+|.+.||.||||||+.+.++. +.....|.++.
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~----Lisp~~G~l~f 62 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVAS----LISPTSGTLLF 62 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHh----ccCCCCceEEE
Confidence 4567899999999999999999885 23345556655
No 460
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=92.38 E-value=0.11 Score=47.03 Aligned_cols=22 Identities=23% Similarity=0.518 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k 248 (520)
+|+|+|.+||||||++.++...
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~ 22 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLING 22 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998874
No 461
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=92.38 E-value=0.11 Score=50.27 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....++.|+|+.||||||+.+.|+..
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 45678999999999999999999754
No 462
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=92.36 E-value=0.11 Score=49.80 Aligned_cols=26 Identities=12% Similarity=0.192 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....++.|+|+.||||||+.+.|+..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999999764
No 463
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=92.35 E-value=0.12 Score=48.15 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=23.1
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
-....++.|+|+.||||||+++.|+..
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 345678999999999999999999754
No 464
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=92.35 E-value=0.12 Score=51.07 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=23.1
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
-....++.|+|+.||||||+.+.|+..
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 25 INPGEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345678999999999999999999754
No 465
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=92.33 E-value=0.11 Score=51.62 Aligned_cols=28 Identities=25% Similarity=0.208 Sum_probs=23.6
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
-....++.|+|++||||||+++.|+..+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 26 LYPGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456789999999999999999998543
No 466
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=92.33 E-value=0.54 Score=53.83 Aligned_cols=120 Identities=14% Similarity=0.177 Sum_probs=62.7
Q ss_pred CCCCCeEEEEEcCCCCChhHHHHHHHhhCC---CCeee--------ehhhHHhhhhcccccCCc-chHHHHhhhhcCCcc
Q psy11031 221 ERNTPLVVWVVGGPGSSKSEMCQKVLQDYP---NWTQI--------SLGKLLRYFANIEDDGEG-LNSRIKSSVSAGDFV 288 (520)
Q Consensus 221 ~~~~p~~I~vlG~PGSGKsT~a~~La~k~~---g~~~i--------s~gdLlr~~~~~~~~~t~-~g~~i~~~l~~G~~v 288 (520)
.-++..++.|+|+.||||||+++.|+.-|. |-..+ +..+ +|+.......+.. ....+++-+.-|...
T Consensus 475 ~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~-lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~ 553 (686)
T TIGR03797 475 QIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQA-VRRQLGVVLQNGRLMSGSIFENIAGGAPL 553 (686)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHH-HHhccEEEccCCccCcccHHHHHhcCCCC
Confidence 345678999999999999999999987652 21221 1111 2311111111111 222445555445445
Q ss_pred chHHHHHHHHH-----HHhccccCCC-cEEEEeC---CCCCHHHHHHHHhhcCCCCCEEEecCC
Q psy11031 289 NRDVVLDIVYA-----EMKKTKYTEA-DGIVIDG---FPREMSQLIDFENKYQIHPPMILIDCS 343 (520)
Q Consensus 289 Pd~lv~~ll~~-----~l~~~~~~~~-~G~ILDG---FPrt~~Qae~l~~~~~~p~~VI~Ld~~ 343 (520)
+++-+.+.++. .+. ....+ ...|-++ +.---.|.-.+-+++...+.+++||=+
T Consensus 554 ~~e~i~~al~~a~l~~~i~--~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEp 615 (686)
T TIGR03797 554 TLDEAWEAARMAGLAEDIR--AMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEA 615 (686)
T ss_pred CHHHHHHHHHHcCcHHHHH--hccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 66655555542 222 11111 1222222 222245666677777777888888744
No 467
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=92.33 E-value=0.12 Score=47.45 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
..+|+|+|+||+||||++.++...
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~ 26 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSED 26 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 467999999999999999999754
No 468
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=92.32 E-value=0.12 Score=52.66 Aligned_cols=37 Identities=22% Similarity=0.348 Sum_probs=28.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCe-eeehhhHHh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWT-QISLGKLLR 262 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~-~is~gdLlr 262 (520)
.=-+++.||||-||||+|..+|... |.. ++..|-.+.
T Consensus 52 lDHvLl~GPPGlGKTTLA~IIA~Em-gvn~k~tsGp~le 89 (332)
T COG2255 52 LDHVLLFGPPGLGKTTLAHIIANEL-GVNLKITSGPALE 89 (332)
T ss_pred cCeEEeeCCCCCcHHHHHHHHHHHh-cCCeEeccccccc
Confidence 4459999999999999999999987 653 334444443
No 469
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=92.31 E-value=0.12 Score=50.61 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....++.|+|+.||||||+.+.|+..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 24 KQGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 44678999999999999999999854
No 470
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=92.30 E-value=0.11 Score=46.93 Aligned_cols=22 Identities=14% Similarity=0.314 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k 248 (520)
+|+|+|.+||||||+..++...
T Consensus 2 ki~liG~~~~GKSsli~~l~~~ 23 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYD 23 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999988653
No 471
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=92.29 E-value=0.12 Score=48.46 Aligned_cols=25 Identities=12% Similarity=0.207 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
+..+|+|+|++||||||+..++...
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~ 42 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDD 42 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4577899999999999999999753
No 472
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=92.29 E-value=0.12 Score=50.86 Aligned_cols=28 Identities=21% Similarity=0.250 Sum_probs=23.8
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
-....++.|+|+.||||||+++.|+..+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 24 VRPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3456789999999999999999998543
No 473
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.28 E-value=0.12 Score=50.17 Aligned_cols=26 Identities=12% Similarity=0.133 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....++.|+|+.||||||+.+.|+..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44678999999999999999999854
No 474
>PRK04296 thymidine kinase; Provisional
Probab=92.27 E-value=0.099 Score=50.05 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
.++++.|+|||||||.+..++.++
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
Confidence 578999999999999998888764
No 475
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.27 E-value=0.13 Score=48.49 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....++.|+|+.||||||+++.|+..
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45678999999999999999999754
No 476
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.27 E-value=0.12 Score=50.63 Aligned_cols=28 Identities=14% Similarity=0.126 Sum_probs=23.8
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
-....++.|+|+.||||||+++.|+..+
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 28 VPKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456789999999999999999998653
No 477
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.26 E-value=0.1 Score=50.41 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
. ++.|+|+.||||||+.+.|+..
T Consensus 26 g-~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 26 G-MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred C-cEEEECCCCCCHHHHHHHHhCC
Confidence 5 8999999999999999999854
No 478
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.25 E-value=0.12 Score=50.80 Aligned_cols=27 Identities=22% Similarity=0.181 Sum_probs=23.3
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
-....++.|+|+.||||||+++.|+..
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 24 INPGEFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345678999999999999999999854
No 479
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=92.24 E-value=0.12 Score=50.48 Aligned_cols=27 Identities=19% Similarity=0.150 Sum_probs=23.1
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
-....++.|+|+.||||||+++.|+.-
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 30 LRAGEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 345678999999999999999999753
No 480
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.23 E-value=0.13 Score=49.39 Aligned_cols=27 Identities=11% Similarity=0.135 Sum_probs=23.4
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
-....++.|+|+.||||||+++.|+..
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 24 LPAGGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 445788999999999999999999754
No 481
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=92.22 E-value=0.11 Score=49.90 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
.+|+|+|++||||||++.++.+..
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE 29 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Confidence 689999999999999999998765
No 482
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=92.20 E-value=0.12 Score=49.08 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....++.|+|+.||||||+.+.|+..
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcC
Confidence 34678999999999999999998754
No 483
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=92.19 E-value=0.1 Score=46.42 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=19.2
Q ss_pred EEEEcCCCCChhHHHHHHHhh
Q psy11031 228 VWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 228 I~vlG~PGSGKsT~a~~La~k 248 (520)
|.|+|++||||||+.++|...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 789999999999999999764
No 484
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=92.17 E-value=0.12 Score=50.64 Aligned_cols=27 Identities=33% Similarity=0.396 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
....++.|+|+.||||||+++.|+..+
T Consensus 10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 10 KRGEVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 346789999999999999999998653
No 485
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=92.17 E-value=0.12 Score=50.80 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=23.3
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
-....++.|+|+.||||||+.+.|+..
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 23 VKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345678999999999999999999854
No 486
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=92.17 E-value=0.092 Score=48.32 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhHHHHHHHhhC
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
+|.++|++||||||++..++..+
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~ 23 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITAL 23 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHH
Confidence 37899999999999999998753
No 487
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=92.16 E-value=0.12 Score=46.02 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHhh
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k 248 (520)
.+|+++|++||||||+...|...
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~ 24 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGR 24 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCC
Confidence 36999999999999999998764
No 488
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=92.16 E-value=0.12 Score=47.94 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHhh
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k 248 (520)
.+|+|+|.||+||||+..++...
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~ 24 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEG 24 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999998854
No 489
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=92.16 E-value=0.13 Score=51.07 Aligned_cols=27 Identities=22% Similarity=0.210 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
....++.|+|+.||||||+++.|+..+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 27 KPGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456789999999999999999998643
No 490
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=92.14 E-value=0.13 Score=47.70 Aligned_cols=25 Identities=16% Similarity=0.383 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
...+|+++|++||||||+..+|...
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~ 37 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGE 37 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccC
Confidence 4567999999999999999998754
No 491
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=92.14 E-value=0.12 Score=51.85 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCC
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNW 252 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~ 252 (520)
....|+|.|++||||||+...|.+..+..
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred cceEEEEECCCccccchHHHHHhhhcccc
Confidence 46789999999999999999999876444
No 492
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=92.14 E-value=0.12 Score=51.30 Aligned_cols=27 Identities=19% Similarity=0.172 Sum_probs=23.3
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
-....++.|+|+.||||||+.+.|+..
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 29 FEQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 345678999999999999999999854
No 493
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=92.14 E-value=0.13 Score=50.29 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQ 247 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~ 247 (520)
+...++.|.|+||||||++|..++-
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~ 41 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAV 41 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999974
No 494
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=92.14 E-value=0.13 Score=48.41 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=23.1
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
-....++.|+|+.||||||+++.|+..
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~ 48 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGL 48 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345678999999999999999999753
No 495
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.13 E-value=0.12 Score=52.11 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQ 247 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~ 247 (520)
+....++|.|+||||||++|.+++.
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~ 58 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAV 58 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3467899999999999999998765
No 496
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.13 E-value=0.12 Score=50.19 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....++.|+|+.||||||+.+.|+..
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 44678999999999999999999854
No 497
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=92.12 E-value=0.12 Score=50.00 Aligned_cols=23 Identities=17% Similarity=0.118 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQ 247 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~ 247 (520)
..+++|+||.||||||+++.|+.
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHH
Confidence 37899999999999999999874
No 498
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=92.12 E-value=0.11 Score=47.50 Aligned_cols=23 Identities=13% Similarity=0.273 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHHhhC
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
.|+|+|.+||||||+..+|...+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~ 23 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLF 23 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhc
Confidence 38899999999999999998654
No 499
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.12 E-value=0.13 Score=50.42 Aligned_cols=27 Identities=30% Similarity=0.337 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
...-++.|+|+.||||||+++.|+..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 26 PAGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 456789999999999999999998653
No 500
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=92.12 E-value=0.13 Score=50.35 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
...++.|+|+.||||||+++.|+..+
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 35789999999999999999998643
Done!