Query psy11031
Match_columns 520
No_of_seqs 410 out of 2518
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 16:22:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11031.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11031hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3umf_A Adenylate kinase; rossm 100.0 6.7E-39 2.3E-43 311.6 19.4 180 221-405 25-213 (217)
2 3sr0_A Adenylate kinase; phosp 100.0 5.4E-37 1.8E-41 296.1 18.0 169 227-404 2-203 (206)
3 3gmt_A Adenylate kinase; ssgci 100.0 2.5E-34 8.6E-39 281.1 15.9 176 224-405 7-229 (230)
4 3umf_A Adenylate kinase; rossm 100.0 5.1E-30 1.7E-34 249.1 14.4 150 10-160 51-214 (217)
5 3tlx_A Adenylate kinase 2; str 100.0 1.9E-28 6.7E-33 241.3 20.3 176 223-404 27-242 (243)
6 3sr0_A Adenylate kinase; phosp 100.0 1.1E-28 3.6E-33 238.1 15.0 146 10-159 22-204 (206)
7 3dl0_A Adenylate kinase; phosp 99.9 1.4E-26 4.8E-31 222.4 19.1 172 227-404 2-213 (216)
8 1ak2_A Adenylate kinase isoenz 99.9 3.8E-26 1.3E-30 222.9 20.9 179 222-406 13-231 (233)
9 3be4_A Adenylate kinase; malar 99.9 1.9E-26 6.3E-31 222.7 18.4 172 225-402 5-216 (217)
10 3gmt_A Adenylate kinase; ssgci 99.9 5.1E-27 1.7E-31 229.4 13.8 147 12-159 32-229 (230)
11 1e4v_A Adenylate kinase; trans 99.9 3.6E-26 1.2E-30 219.8 17.3 171 227-403 2-213 (214)
12 3fb4_A Adenylate kinase; psych 99.9 5E-26 1.7E-30 218.3 18.2 173 227-405 2-214 (216)
13 1aky_A Adenylate kinase; ATP:A 99.9 1.4E-25 4.8E-30 216.4 19.1 176 224-404 3-218 (220)
14 2xb4_A Adenylate kinase; ATP-b 99.9 1E-24 3.4E-29 211.7 16.6 170 227-403 2-222 (223)
15 1zak_A Adenylate kinase; ATP:A 99.9 1.5E-24 5.1E-29 209.5 16.9 181 224-412 4-217 (222)
16 1ukz_A Uridylate kinase; trans 99.9 2E-23 6.8E-28 198.3 22.7 180 222-406 12-202 (203)
17 1zd8_A GTP:AMP phosphotransfer 99.9 6.4E-24 2.2E-28 205.9 19.5 173 224-405 6-214 (227)
18 2c95_A Adenylate kinase 1; tra 99.9 1.3E-23 4.4E-28 197.6 20.1 178 224-406 8-194 (196)
19 2cdn_A Adenylate kinase; phosp 99.9 2.3E-23 7.8E-28 198.0 17.5 174 222-403 17-199 (201)
20 1qf9_A UMP/CMP kinase, protein 99.9 1.1E-22 3.8E-27 190.0 20.5 176 223-405 4-191 (194)
21 2bwj_A Adenylate kinase 5; pho 99.9 6.1E-23 2.1E-27 193.4 17.1 178 224-406 11-197 (199)
22 1tev_A UMP-CMP kinase; ploop, 99.9 2.6E-22 8.9E-27 187.8 20.6 178 224-405 2-194 (196)
23 3cm0_A Adenylate kinase; ATP-b 99.9 2E-22 7E-27 188.2 17.2 169 224-403 3-184 (186)
24 2bbw_A Adenylate kinase 4, AK4 99.8 4.8E-19 1.6E-23 173.7 17.7 173 224-405 26-234 (246)
25 3tlx_A Adenylate kinase 2; str 99.8 7.7E-19 2.6E-23 172.7 17.3 134 21-158 75-242 (243)
26 3dl0_A Adenylate kinase; phosp 99.7 1.4E-17 4.8E-22 159.5 15.6 147 12-159 24-214 (216)
27 3fb4_A Adenylate kinase; psych 99.7 5.9E-17 2E-21 155.0 17.0 146 13-159 25-214 (216)
28 3be4_A Adenylate kinase; malar 99.7 5.6E-17 1.9E-21 156.1 16.5 141 12-157 29-217 (217)
29 1ak2_A Adenylate kinase isoenz 99.7 3.4E-16 1.2E-20 152.3 16.9 136 21-160 62-231 (233)
30 3lw7_A Adenylate kinase relate 99.7 7.2E-16 2.5E-20 140.6 17.1 165 226-406 2-177 (179)
31 1e4v_A Adenylate kinase; trans 99.7 2.9E-16 9.8E-21 150.6 15.0 145 12-157 24-213 (214)
32 2xb4_A Adenylate kinase; ATP-b 99.7 1.2E-15 4.2E-20 147.5 16.9 133 20-157 45-222 (223)
33 1aky_A Adenylate kinase; ATP:A 99.7 1.2E-15 4.1E-20 146.7 16.4 135 20-158 49-218 (220)
34 2v54_A DTMP kinase, thymidylat 99.6 6E-15 2.1E-19 139.2 18.1 170 224-409 3-194 (204)
35 4eaq_A DTMP kinase, thymidylat 99.6 2.8E-14 9.5E-19 139.1 15.1 172 223-407 24-226 (229)
36 1zak_A Adenylate kinase; ATP:A 99.6 2.6E-14 8.8E-19 137.6 14.2 137 21-163 51-214 (222)
37 1ukz_A Uridylate kinase; trans 99.5 1.1E-13 3.7E-18 130.9 17.0 134 23-160 64-202 (203)
38 1zd8_A GTP:AMP phosphotransfer 99.5 8.9E-14 3E-18 134.3 16.8 146 12-161 31-216 (227)
39 3v9p_A DTMP kinase, thymidylat 99.5 2.4E-14 8.2E-19 139.7 12.5 171 223-405 23-226 (227)
40 2c95_A Adenylate kinase 1; tra 99.5 3.3E-13 1.1E-17 126.2 18.6 138 20-161 54-195 (196)
41 4hlc_A DTMP kinase, thymidylat 99.5 6.9E-14 2.4E-18 134.3 13.9 168 225-409 2-204 (205)
42 2wwf_A Thymidilate kinase, put 99.5 2.9E-14 1E-18 135.2 10.2 168 224-405 9-199 (212)
43 2pbr_A DTMP kinase, thymidylat 99.5 2.2E-13 7.7E-18 126.9 15.4 157 227-405 2-191 (195)
44 4edh_A DTMP kinase, thymidylat 99.5 2.8E-13 9.7E-18 130.8 16.2 174 224-410 5-211 (213)
45 4tmk_A Protein (thymidylate ki 99.5 1.4E-13 4.7E-18 133.0 13.4 166 225-408 3-209 (213)
46 1ly1_A Polynucleotide kinase; 99.5 8.9E-14 3E-18 128.1 11.5 162 225-405 2-172 (181)
47 1tev_A UMP-CMP kinase; ploop, 99.5 5.5E-13 1.9E-17 124.1 16.7 135 21-159 50-194 (196)
48 3lv8_A DTMP kinase, thymidylat 99.5 1.6E-13 5.5E-18 134.6 12.6 169 224-409 26-232 (236)
49 2bwj_A Adenylate kinase 5; pho 99.5 9.2E-13 3.1E-17 123.5 17.2 137 21-161 58-198 (199)
50 1nn5_A Similar to deoxythymidy 99.5 3.1E-13 1E-17 128.3 13.8 175 222-409 6-204 (215)
51 1nks_A Adenylate kinase; therm 99.5 4.1E-13 1.4E-17 124.8 14.0 164 226-403 2-193 (194)
52 1qf9_A UMP/CMP kinase, protein 99.5 1.3E-12 4.6E-17 121.3 17.4 135 20-159 51-191 (194)
53 3tmk_A Thymidylate kinase; pho 99.4 3.2E-12 1.1E-16 123.7 18.9 169 224-409 4-206 (216)
54 3ld9_A DTMP kinase, thymidylat 99.4 4.7E-13 1.6E-17 130.2 12.0 173 219-408 15-218 (223)
55 3t61_A Gluconokinase; PSI-biol 99.4 1.8E-12 6.2E-17 122.6 15.6 158 224-405 17-179 (202)
56 2plr_A DTMP kinase, probable t 99.4 4.1E-13 1.4E-17 126.8 10.9 162 224-407 3-209 (213)
57 1kht_A Adenylate kinase; phosp 99.4 6.7E-13 2.3E-17 123.3 11.8 164 225-403 3-191 (192)
58 2z0h_A DTMP kinase, thymidylat 99.4 2.4E-12 8E-17 120.5 14.6 162 227-406 2-192 (197)
59 2cdn_A Adenylate kinase; phosp 99.4 3.1E-12 1.1E-16 120.9 15.2 130 20-157 65-199 (201)
60 3vaa_A Shikimate kinase, SK; s 99.4 9.5E-13 3.2E-17 124.6 11.2 160 223-407 23-197 (199)
61 3hjn_A DTMP kinase, thymidylat 99.4 3E-12 1E-16 122.0 12.7 164 227-407 2-193 (197)
62 3cm0_A Adenylate kinase; ATP-b 99.4 3.7E-12 1.3E-16 118.3 13.0 128 21-157 50-184 (186)
63 1cke_A CK, MSSA, protein (cyti 99.4 1.8E-12 6.2E-17 124.3 9.9 167 225-406 5-223 (227)
64 1ltq_A Polynucleotide kinase; 99.3 1.1E-12 3.7E-17 131.7 6.6 164 225-397 2-175 (301)
65 3kb2_A SPBC2 prophage-derived 99.3 3.6E-11 1.2E-15 109.7 15.8 145 226-406 2-167 (173)
66 3trf_A Shikimate kinase, SK; a 99.3 2.6E-11 8.7E-16 112.7 12.5 162 225-409 5-178 (185)
67 2rhm_A Putative kinase; P-loop 99.3 2.2E-11 7.4E-16 113.5 11.9 168 224-407 4-186 (193)
68 1e6c_A Shikimate kinase; phosp 99.2 4.9E-11 1.7E-15 109.3 12.9 153 226-404 3-169 (173)
69 1vht_A Dephospho-COA kinase; s 99.2 7.1E-11 2.4E-15 112.9 14.3 168 224-408 3-197 (218)
70 1y63_A LMAJ004144AAA protein; 99.2 1.4E-10 4.7E-15 108.4 15.9 159 220-404 5-173 (184)
71 2bbw_A Adenylate kinase 4, AK4 99.2 2E-10 6.7E-15 112.2 17.5 133 22-161 74-236 (246)
72 2iyv_A Shikimate kinase, SK; t 99.2 2.1E-11 7E-16 113.3 9.7 153 226-403 3-166 (184)
73 1jjv_A Dephospho-COA kinase; P 99.2 1.8E-10 6.3E-15 108.9 16.0 163 226-408 3-199 (206)
74 2pt5_A Shikimate kinase, SK; a 99.2 8.2E-11 2.8E-15 107.4 12.9 149 227-404 2-162 (168)
75 1zuh_A Shikimate kinase; alpha 99.2 2.3E-11 7.8E-16 111.5 8.5 146 226-403 8-167 (168)
76 1via_A Shikimate kinase; struc 99.2 1.5E-11 5.1E-16 113.6 6.9 147 227-403 6-164 (175)
77 2f6r_A COA synthase, bifunctio 99.2 1.9E-10 6.5E-15 115.2 14.9 172 222-410 72-273 (281)
78 3a4m_A L-seryl-tRNA(SEC) kinas 99.2 1.2E-10 4.1E-15 115.1 12.5 156 224-404 3-172 (260)
79 2jaq_A Deoxyguanosine kinase; 99.2 4.8E-10 1.6E-14 105.0 14.7 162 227-405 2-200 (205)
80 1q3t_A Cytidylate kinase; nucl 99.1 8.3E-11 2.8E-15 114.3 9.4 174 222-406 13-235 (236)
81 2qor_A Guanylate kinase; phosp 99.1 4.8E-10 1.6E-14 106.3 13.3 165 224-405 11-196 (204)
82 1m7g_A Adenylylsulfate kinase; 99.1 1E-10 3.4E-15 111.6 8.4 160 222-405 22-202 (211)
83 4eun_A Thermoresistant glucoki 99.1 8.5E-10 2.9E-14 104.3 13.7 161 220-404 24-192 (200)
84 2h92_A Cytidylate kinase; ross 99.1 1.8E-10 6E-15 110.0 9.1 167 225-404 3-216 (219)
85 3iij_A Coilin-interacting nucl 99.1 6.5E-10 2.2E-14 102.9 12.7 156 223-404 9-169 (180)
86 3nwj_A ATSK2; P loop, shikimat 99.1 3.1E-10 1.1E-14 112.1 10.8 162 225-407 48-238 (250)
87 2qt1_A Nicotinamide riboside k 99.1 3E-10 1E-14 107.6 9.9 170 222-405 18-205 (207)
88 1uj2_A Uridine-cytidine kinase 99.1 3.4E-10 1.2E-14 111.1 9.8 171 222-408 19-236 (252)
89 1knq_A Gluconate kinase; ALFA/ 99.1 5.3E-09 1.8E-13 96.1 17.2 156 224-404 7-172 (175)
90 2vli_A Antibiotic resistance p 99.1 6.5E-10 2.2E-14 102.6 10.7 154 224-404 4-170 (183)
91 2if2_A Dephospho-COA kinase; a 99.0 8.3E-10 2.8E-14 104.1 11.0 160 226-405 2-191 (204)
92 1p5z_B DCK, deoxycytidine kina 99.0 3.6E-10 1.2E-14 111.5 8.1 180 223-407 22-260 (263)
93 1kag_A SKI, shikimate kinase I 99.0 1.7E-09 5.7E-14 99.1 11.3 153 225-404 4-171 (173)
94 3ake_A Cytidylate kinase; CMP 99.0 4.7E-09 1.6E-13 98.7 14.1 164 226-404 3-207 (208)
95 1uf9_A TT1252 protein; P-loop, 98.9 3.1E-09 1.1E-13 99.6 11.0 161 223-404 6-192 (203)
96 4e22_A Cytidylate kinase; P-lo 98.9 7.6E-09 2.6E-13 101.7 12.6 174 223-407 25-246 (252)
97 1gtv_A TMK, thymidylate kinase 98.9 3.2E-10 1.1E-14 107.4 1.6 163 227-401 2-209 (214)
98 1gvn_B Zeta; postsegregational 98.9 2.8E-08 9.7E-13 99.8 15.8 112 224-347 32-151 (287)
99 2yvu_A Probable adenylyl-sulfa 98.9 5.3E-09 1.8E-13 97.3 9.7 158 223-406 11-184 (186)
100 3fdi_A Uncharacterized protein 98.8 5.2E-08 1.8E-12 92.8 13.6 164 225-405 6-198 (201)
101 2j41_A Guanylate kinase; GMP, 98.8 2.6E-08 8.9E-13 93.5 10.8 164 223-407 4-188 (207)
102 4eaq_A DTMP kinase, thymidylat 98.8 5.8E-08 2E-12 94.2 13.0 140 13-161 60-226 (229)
103 2vp4_A Deoxynucleoside kinase; 98.7 4.2E-08 1.4E-12 94.8 10.8 76 331-408 144-227 (230)
104 2p5t_B PEZT; postsegregational 98.7 2.3E-08 8E-13 98.1 8.5 113 223-347 30-150 (253)
105 4i1u_A Dephospho-COA kinase; s 98.7 3.6E-07 1.2E-11 87.8 15.1 165 227-408 11-204 (210)
106 3r20_A Cytidylate kinase; stru 98.6 1.1E-07 3.9E-12 92.7 10.6 173 223-407 7-229 (233)
107 3lw7_A Adenylate kinase relate 98.6 4.2E-07 1.4E-11 82.0 13.6 143 12-161 24-178 (179)
108 1qhx_A CPT, protein (chloramph 98.6 5E-07 1.7E-11 82.8 13.9 37 225-262 3-41 (178)
109 2grj_A Dephospho-COA kinase; T 98.6 2E-07 6.7E-12 88.3 10.7 39 223-262 10-48 (192)
110 2ocp_A DGK, deoxyguanosine kin 98.5 4.6E-07 1.6E-11 87.8 12.4 73 333-406 149-234 (241)
111 3hdt_A Putative kinase; struct 98.5 4.7E-07 1.6E-11 87.7 11.9 171 224-405 13-218 (223)
112 3tr0_A Guanylate kinase, GMP k 98.5 9.7E-07 3.3E-11 82.6 13.2 161 224-405 6-186 (205)
113 3zvl_A Bifunctional polynucleo 98.5 3.2E-07 1.1E-11 96.8 10.9 93 222-347 255-350 (416)
114 3tau_A Guanylate kinase, GMP k 98.5 1.3E-06 4.4E-11 83.0 14.1 165 223-406 6-189 (208)
115 2pez_A Bifunctional 3'-phospho 98.4 7E-07 2.4E-11 82.3 10.2 39 224-262 4-45 (179)
116 2gks_A Bifunctional SAT/APS ki 98.4 7.4E-07 2.5E-11 97.3 11.6 164 222-405 369-540 (546)
117 2axn_A 6-phosphofructo-2-kinas 98.4 2.6E-07 9.1E-12 100.3 6.1 141 223-374 33-202 (520)
118 1ex7_A Guanylate kinase; subst 98.4 4E-06 1.4E-10 79.0 13.2 160 228-404 4-183 (186)
119 3uie_A Adenylyl-sulfate kinase 98.3 3.4E-06 1.2E-10 79.3 12.0 160 222-405 22-194 (200)
120 1x6v_B Bifunctional 3'-phospho 98.3 2.4E-06 8.3E-11 94.4 11.1 160 224-405 51-222 (630)
121 2pbr_A DTMP kinase, thymidylat 98.2 2.5E-05 8.5E-10 71.9 15.0 130 15-161 37-193 (195)
122 4hlc_A DTMP kinase, thymidylat 98.2 3.1E-05 1.1E-09 73.8 14.5 137 13-162 36-203 (205)
123 1m8p_A Sulfate adenylyltransfe 98.1 6E-06 2E-10 90.6 9.2 163 222-405 393-566 (573)
124 2z0h_A DTMP kinase, thymidylat 98.1 5.5E-05 1.9E-09 69.9 13.7 135 14-161 36-193 (197)
125 3ch4_B Pmkase, phosphomevalona 98.0 3.2E-05 1.1E-09 73.7 12.1 157 224-404 10-188 (202)
126 3a00_A Guanylate kinase, GMP k 98.0 1.4E-05 4.8E-10 74.2 9.4 166 226-404 2-183 (186)
127 2plr_A DTMP kinase, probable t 98.0 2.2E-05 7.4E-10 73.4 10.4 131 20-161 41-209 (213)
128 1kgd_A CASK, peripheral plasma 98.0 7.8E-05 2.7E-09 68.8 13.1 26 224-249 4-29 (180)
129 3v9p_A DTMP kinase, thymidylat 98.0 6.1E-05 2.1E-09 73.0 12.5 138 11-159 62-226 (227)
130 2ze6_A Isopentenyl transferase 97.9 2.3E-05 7.8E-10 76.9 9.3 35 226-261 2-36 (253)
131 3lv8_A DTMP kinase, thymidylat 97.9 0.00028 9.7E-09 68.7 16.6 142 11-163 61-232 (236)
132 2bdt_A BH3686; alpha-beta prot 97.9 3.4E-05 1.2E-09 71.4 9.6 37 226-262 3-39 (189)
133 3ney_A 55 kDa erythrocyte memb 97.9 9.2E-05 3.2E-09 70.2 12.5 158 223-405 17-189 (197)
134 3asz_A Uridine kinase; cytidin 97.9 0.00017 5.9E-09 67.7 13.5 39 223-262 4-44 (211)
135 3lnc_A Guanylate kinase, GMP k 97.8 0.0001 3.5E-09 70.6 11.7 160 222-405 24-208 (231)
136 2wwf_A Thymidilate kinase, put 97.8 3.1E-05 1E-09 72.6 7.8 130 18-160 51-200 (212)
137 1nks_A Adenylate kinase; therm 97.8 0.00022 7.4E-09 65.4 13.1 135 17-157 34-193 (194)
138 4edh_A DTMP kinase, thymidylat 97.8 0.00064 2.2E-08 65.0 16.8 144 11-162 39-209 (213)
139 4tmk_A Protein (thymidylate ki 97.8 0.00014 4.9E-09 69.6 12.1 141 12-163 38-210 (213)
140 3czp_A Putative polyphosphate 97.8 0.00019 6.4E-09 77.3 14.1 292 79-407 145-494 (500)
141 1p6x_A Thymidine kinase; P-loo 97.8 8.2E-05 2.8E-09 76.2 10.2 26 224-249 6-31 (334)
142 1bif_A 6-phosphofructo-2-kinas 97.7 2.9E-05 9.9E-10 83.0 6.1 109 223-342 37-157 (469)
143 2v54_A DTMP kinase, thymidylat 97.7 0.0004 1.4E-08 64.5 12.5 128 17-162 42-193 (204)
144 1cke_A CK, MSSA, protein (cyti 97.6 0.00012 4.1E-09 69.4 8.7 94 56-161 122-224 (227)
145 1osn_A Thymidine kinase, VZV-T 97.6 0.00028 9.5E-09 72.4 10.7 28 222-249 9-37 (341)
146 1nn5_A Similar to deoxythymidy 97.5 0.00047 1.6E-08 64.5 10.9 130 18-162 50-203 (215)
147 1kht_A Adenylate kinase; phosp 97.5 0.00089 3.1E-08 61.2 11.5 139 14-157 34-191 (192)
148 1e2k_A Thymidine kinase; trans 97.4 0.00089 3.1E-08 68.4 12.4 26 224-249 3-28 (331)
149 3czq_A Putative polyphosphate 97.4 0.001 3.5E-08 67.0 12.5 144 223-394 84-264 (304)
150 1of1_A Thymidine kinase; trans 97.4 0.0017 6E-08 67.3 14.5 28 222-249 46-73 (376)
151 1p5z_B DCK, deoxycytidine kina 97.4 0.00062 2.1E-08 66.5 10.1 98 63-161 146-260 (263)
152 1ly1_A Polynucleotide kinase; 97.4 0.00041 1.4E-08 62.8 8.0 107 41-159 62-172 (181)
153 1zp6_A Hypothetical protein AT 97.4 0.00016 5.3E-09 66.7 5.1 161 222-405 6-175 (191)
154 2jaq_A Deoxyguanosine kinase; 97.3 0.0019 6.6E-08 59.5 12.2 75 80-161 123-202 (205)
155 3cr8_A Sulfate adenylyltranfer 97.3 0.00069 2.4E-08 73.9 10.2 27 223-249 367-393 (552)
156 3crm_A TRNA delta(2)-isopenten 97.2 0.00017 5.7E-09 73.5 4.2 36 225-261 5-40 (323)
157 3t61_A Gluconokinase; PSI-biol 97.2 0.007 2.4E-07 56.2 14.3 96 56-161 85-181 (202)
158 1s96_A Guanylate kinase, GMP k 97.1 0.0082 2.8E-07 57.4 14.4 163 223-405 14-197 (219)
159 4gp7_A Metallophosphoesterase; 97.1 0.007 2.4E-07 55.1 13.1 101 223-347 7-114 (171)
160 2vp4_A Deoxynucleoside kinase; 97.0 0.00044 1.5E-08 66.3 4.8 81 79-161 144-226 (230)
161 3a8t_A Adenylate isopentenyltr 97.0 0.00033 1.1E-08 71.7 4.0 37 223-260 38-74 (339)
162 1a7j_A Phosphoribulokinase; tr 97.0 0.00018 6E-09 72.1 1.9 38 224-262 4-46 (290)
163 3hjn_A DTMP kinase, thymidylat 96.9 0.008 2.7E-07 56.5 12.5 135 11-161 33-193 (197)
164 3foz_A TRNA delta(2)-isopenten 96.9 0.00052 1.8E-08 69.5 4.4 37 223-260 8-44 (316)
165 3vaa_A Shikimate kinase, SK; s 96.9 0.0078 2.7E-07 56.0 12.3 97 56-161 93-197 (199)
166 3czp_A Putative polyphosphate 96.9 0.0025 8.4E-08 68.6 9.8 158 223-408 41-238 (500)
167 3d3q_A TRNA delta(2)-isopenten 96.9 0.00049 1.7E-08 70.6 3.8 35 225-260 7-41 (340)
168 3exa_A TRNA delta(2)-isopenten 96.8 0.00069 2.4E-08 68.7 4.5 35 225-260 3-37 (322)
169 1kjw_A Postsynaptic density pr 96.8 0.015 5.3E-07 58.2 14.4 155 223-405 103-281 (295)
170 1ltq_A Polynucleotide kinase; 96.7 0.0028 9.4E-08 62.8 7.8 131 13-149 28-173 (301)
171 1dek_A Deoxynucleoside monopho 96.7 0.00096 3.3E-08 65.1 4.1 36 226-262 2-37 (241)
172 2rhm_A Putative kinase; P-loop 96.7 0.0031 1.1E-07 57.7 7.2 102 56-161 76-186 (193)
173 3kb2_A SPBC2 prophage-derived 96.6 0.034 1.2E-06 49.5 13.4 80 74-161 87-168 (173)
174 3t15_A Ribulose bisphosphate c 96.5 0.0013 4.4E-08 65.7 3.7 40 222-262 33-74 (293)
175 1c9k_A COBU, adenosylcobinamid 96.5 0.0014 4.8E-08 61.2 3.6 30 228-257 2-31 (180)
176 2qt1_A Nicotinamide riboside k 96.5 0.0024 8.2E-08 59.7 5.3 93 57-159 110-205 (207)
177 3c8u_A Fructokinase; YP_612366 96.4 0.0016 5.3E-08 61.3 3.4 38 223-260 20-61 (208)
178 2ocp_A DGK, deoxyguanosine kin 96.3 0.0052 1.8E-07 59.0 6.8 80 81-161 149-235 (241)
179 3a4m_A L-seryl-tRNA(SEC) kinas 96.3 0.017 5.7E-07 56.3 10.3 94 58-158 73-172 (260)
180 3eph_A TRNA isopentenyltransfe 96.3 0.0019 6.6E-08 67.6 3.3 34 225-259 2-35 (409)
181 4b4t_M 26S protease regulatory 96.3 0.0023 8E-08 67.6 4.0 40 222-262 212-253 (434)
182 3tmk_A Thymidylate kinase; pho 96.2 0.0037 1.3E-07 59.9 5.0 142 11-163 35-206 (216)
183 2jeo_A Uridine-cytidine kinase 96.2 0.0025 8.6E-08 61.5 3.7 31 222-253 22-52 (245)
184 4b4t_L 26S protease subunit RP 96.2 0.0027 9.3E-08 67.2 4.0 40 222-262 212-253 (437)
185 2qz4_A Paraplegin; AAA+, SPG7, 96.1 0.003 1E-07 60.7 3.8 36 224-260 38-75 (262)
186 4b4t_K 26S protease regulatory 96.1 0.0031 1E-07 66.6 4.0 40 222-262 203-244 (428)
187 4b4t_J 26S protease regulatory 96.1 0.0027 9.4E-08 66.4 3.5 40 222-262 179-220 (405)
188 3cf0_A Transitional endoplasmi 96.1 0.0041 1.4E-07 62.1 4.6 38 224-262 48-87 (301)
189 1lv7_A FTSH; alpha/beta domain 96.1 0.0033 1.1E-07 60.8 3.7 36 225-261 45-82 (257)
190 3h4m_A Proteasome-activating n 96.1 0.0043 1.5E-07 60.7 4.6 32 224-256 50-81 (285)
191 3b9p_A CG5977-PA, isoform A; A 96.0 0.0044 1.5E-07 61.1 4.6 38 224-262 53-92 (297)
192 3ec2_A DNA replication protein 96.0 0.0033 1.1E-07 57.4 3.2 38 225-262 38-80 (180)
193 1q3t_A Cytidylate kinase; nucl 96.0 0.013 4.6E-07 56.0 7.6 97 56-160 134-235 (236)
194 1odf_A YGR205W, hypothetical 3 95.9 0.0039 1.3E-07 62.3 3.7 40 222-262 28-75 (290)
195 2ga8_A Hypothetical 39.9 kDa p 95.9 0.0024 8.1E-08 65.8 2.0 29 225-254 24-52 (359)
196 3tqc_A Pantothenate kinase; bi 95.9 0.0052 1.8E-07 62.4 4.5 40 222-261 89-134 (321)
197 1uj2_A Uridine-cytidine kinase 95.9 0.011 3.8E-07 57.2 6.5 96 57-161 131-235 (252)
198 1rz3_A Hypothetical protein rb 95.9 0.004 1.4E-07 58.2 3.2 26 223-248 20-45 (201)
199 1jbk_A CLPB protein; beta barr 95.9 0.0059 2E-07 54.7 4.2 25 225-249 43-67 (195)
200 1m7g_A Adenylylsulfate kinase; 95.9 0.0093 3.2E-07 56.0 5.7 70 81-159 131-202 (211)
201 4b4t_H 26S protease regulatory 95.9 0.0041 1.4E-07 66.2 3.5 40 222-262 240-281 (467)
202 4b4t_I 26S protease regulatory 95.8 0.0048 1.7E-07 65.0 4.0 40 222-262 213-254 (437)
203 1sq5_A Pantothenate kinase; P- 95.8 0.0058 2E-07 61.3 4.3 37 223-260 78-121 (308)
204 2x8a_A Nuclear valosin-contain 95.8 0.0067 2.3E-07 59.9 4.6 29 227-256 46-74 (274)
205 3ld9_A DTMP kinase, thymidylat 95.8 0.015 5.3E-07 55.8 7.1 133 12-161 57-217 (223)
206 3hws_A ATP-dependent CLP prote 95.8 0.0055 1.9E-07 62.6 4.1 36 225-261 51-88 (363)
207 1g41_A Heat shock protein HSLU 95.8 0.005 1.7E-07 65.3 3.8 33 225-258 50-82 (444)
208 3eie_A Vacuolar protein sortin 95.8 0.0071 2.4E-07 60.8 4.7 38 224-262 50-89 (322)
209 2qor_A Guanylate kinase; phosp 95.8 0.066 2.3E-06 49.7 11.2 93 57-161 103-198 (204)
210 3bos_A Putative DNA replicatio 95.6 0.0093 3.2E-07 55.9 4.8 39 224-262 51-93 (242)
211 1d2n_A N-ethylmaleimide-sensit 95.6 0.0064 2.2E-07 59.3 3.8 33 223-256 62-94 (272)
212 1knq_A Gluconate kinase; ALFA/ 95.6 0.17 5.8E-06 45.4 13.1 89 57-158 80-172 (175)
213 2qmh_A HPR kinase/phosphorylas 95.6 0.0094 3.2E-07 56.5 4.5 34 224-259 33-66 (205)
214 1ixz_A ATP-dependent metallopr 95.6 0.009 3.1E-07 57.5 4.5 36 226-262 50-87 (254)
215 1vht_A Dephospho-COA kinase; s 95.6 0.087 3E-06 49.3 11.3 90 58-162 107-197 (218)
216 1jjv_A Dephospho-COA kinase; P 95.6 0.15 5.1E-06 47.1 12.8 89 57-161 105-198 (206)
217 1lvg_A Guanylate kinase, GMP k 95.5 0.0047 1.6E-07 57.8 2.3 71 335-409 117-191 (198)
218 1ye8_A Protein THEP1, hypothet 95.5 0.0068 2.3E-07 56.0 3.3 23 227-249 2-24 (178)
219 2w58_A DNAI, primosome compone 95.5 0.011 3.8E-07 54.6 4.8 38 225-262 54-95 (202)
220 1g8f_A Sulfate adenylyltransfe 95.5 0.0064 2.2E-07 65.6 3.3 30 222-252 392-421 (511)
221 3rhf_A Putative polyphosphate 95.4 0.031 1.1E-06 55.6 7.8 146 223-394 73-253 (289)
222 1ofh_A ATP-dependent HSL prote 95.4 0.0078 2.7E-07 59.2 3.4 36 224-260 49-86 (310)
223 2qp9_X Vacuolar protein sortin 95.4 0.011 3.6E-07 60.6 4.4 37 225-262 84-122 (355)
224 1xwi_A SKD1 protein; VPS4B, AA 95.3 0.012 4.1E-07 59.4 4.7 38 225-262 45-84 (322)
225 1um8_A ATP-dependent CLP prote 95.3 0.01 3.4E-07 60.9 4.1 31 225-256 72-102 (376)
226 3d8b_A Fidgetin-like protein 1 95.3 0.012 4.1E-07 60.2 4.6 38 224-262 116-155 (357)
227 2vli_A Antibiotic resistance p 95.2 0.053 1.8E-06 48.9 8.1 126 20-161 40-173 (183)
228 1z6g_A Guanylate kinase; struc 95.2 0.01 3.5E-07 56.4 3.3 165 223-405 21-207 (218)
229 2p65_A Hypothetical protein PF 95.2 0.0089 3E-07 53.6 2.7 25 225-249 43-67 (187)
230 2r62_A Cell division protease 95.1 0.0045 1.5E-07 60.1 0.7 36 225-261 44-81 (268)
231 1l8q_A Chromosomal replication 95.1 0.014 4.8E-07 58.4 4.4 39 224-262 36-78 (324)
232 1iy2_A ATP-dependent metallopr 95.1 0.015 5.2E-07 57.0 4.5 36 226-262 74-111 (278)
233 1znw_A Guanylate kinase, GMP k 95.1 0.012 4.2E-07 55.0 3.7 27 223-249 18-44 (207)
234 2xkx_A Disks large homolog 4; 95.1 0.34 1.2E-05 54.3 15.8 161 222-405 528-707 (721)
235 3pfi_A Holliday junction ATP-d 95.0 0.015 5.2E-07 58.2 4.3 33 224-257 54-86 (338)
236 1in4_A RUVB, holliday junction 95.0 0.012 4E-07 59.6 3.4 28 225-253 51-78 (334)
237 3cf2_A TER ATPase, transitiona 95.0 0.016 5.4E-07 65.8 4.6 39 223-262 236-276 (806)
238 1e6c_A Shikimate kinase; phosp 94.9 0.1 3.5E-06 46.5 9.2 92 57-158 70-169 (173)
239 1svm_A Large T antigen; AAA+ f 94.9 0.015 5.1E-07 60.3 4.0 34 222-256 166-199 (377)
240 3co5_A Putative two-component 94.9 0.0065 2.2E-07 53.6 1.1 33 227-260 29-62 (143)
241 3aez_A Pantothenate kinase; tr 94.9 0.017 5.7E-07 58.3 4.1 27 223-249 88-114 (312)
242 3nwj_A ATSK2; P loop, shikimat 94.8 0.1 3.5E-06 50.9 9.5 115 37-163 102-240 (250)
243 3vfd_A Spastin; ATPase, microt 94.8 0.02 6.9E-07 59.1 4.6 32 225-257 148-179 (389)
244 1sxj_A Activator 1 95 kDa subu 94.8 0.02 6.8E-07 61.6 4.6 33 224-257 76-108 (516)
245 3n70_A Transport activator; si 94.8 0.017 5.8E-07 51.0 3.4 23 226-248 25-47 (145)
246 1njg_A DNA polymerase III subu 94.7 0.019 6.4E-07 53.3 3.8 26 224-249 44-69 (250)
247 2ehv_A Hypothetical protein PH 94.7 0.015 5E-07 55.3 3.1 23 224-246 29-51 (251)
248 3iij_A Coilin-interacting nucl 94.7 0.067 2.3E-06 48.4 7.5 129 13-158 36-169 (180)
249 4eun_A Thermoresistant glucoki 94.7 0.33 1.1E-05 44.7 12.4 90 57-158 101-192 (200)
250 2pt5_A Shikimate kinase, SK; a 94.7 0.13 4.4E-06 45.7 9.1 87 57-159 69-163 (168)
251 3syl_A Protein CBBX; photosynt 94.7 0.019 6.5E-07 56.7 3.8 26 224-249 66-91 (309)
252 2kjq_A DNAA-related protein; s 94.6 0.017 5.9E-07 51.6 3.2 26 224-249 35-60 (149)
253 1y63_A LMAJ004144AAA protein; 94.6 0.23 7.9E-06 45.2 10.9 131 12-160 35-175 (184)
254 2ce7_A Cell division protein F 94.6 0.018 6.1E-07 61.6 3.8 37 225-262 49-87 (476)
255 4a74_A DNA repair and recombin 94.6 0.017 5.7E-07 54.1 3.1 25 224-248 24-48 (231)
256 3clv_A RAB5 protein, putative; 94.6 0.025 8.5E-07 51.1 4.1 28 221-248 3-30 (208)
257 1xjc_A MOBB protein homolog; s 94.5 0.017 5.7E-07 53.2 2.9 24 225-248 4-27 (169)
258 2chg_A Replication factor C sm 94.5 0.019 6.4E-07 52.7 3.2 23 227-249 40-62 (226)
259 2bjv_A PSP operon transcriptio 94.5 0.022 7.6E-07 55.1 3.9 35 226-260 30-68 (265)
260 2c9o_A RUVB-like 1; hexameric 94.5 0.02 6.7E-07 60.6 3.6 37 225-262 63-103 (456)
261 2cvh_A DNA repair and recombin 94.4 0.023 7.8E-07 52.9 3.6 24 224-247 19-42 (220)
262 4fcw_A Chaperone protein CLPB; 94.4 0.023 8E-07 56.0 3.8 24 226-249 48-71 (311)
263 2zan_A Vacuolar protein sortin 94.4 0.031 1E-06 59.0 4.8 39 224-262 166-206 (444)
264 2iyv_A Shikimate kinase, SK; t 94.3 0.079 2.7E-06 48.0 7.0 69 82-157 94-166 (184)
265 2w0m_A SSO2452; RECA, SSPF, un 94.3 0.022 7.6E-07 53.2 3.1 25 224-248 22-46 (235)
266 1tue_A Replication protein E1; 94.3 0.02 6.7E-07 54.6 2.7 24 226-249 59-82 (212)
267 3tvt_A Disks large 1 tumor sup 94.2 0.61 2.1E-05 46.5 13.7 156 225-405 100-276 (292)
268 1vma_A Cell division protein F 94.2 0.022 7.7E-07 57.3 3.2 27 223-249 102-128 (306)
269 1gtv_A TMK, thymidylate kinase 94.1 0.019 6.6E-07 53.3 2.4 94 57-155 88-209 (214)
270 2h92_A Cytidylate kinase; ross 94.1 0.066 2.3E-06 50.0 6.1 94 57-158 118-216 (219)
271 3e70_C DPA, signal recognition 94.1 0.026 9E-07 57.3 3.5 27 223-249 127-153 (328)
272 2dyk_A GTP-binding protein; GT 94.1 0.029 1E-06 48.9 3.4 24 226-249 2-25 (161)
273 3pvs_A Replication-associated 94.0 0.037 1.3E-06 58.6 4.7 32 225-257 50-81 (447)
274 2if2_A Dephospho-COA kinase; a 94.0 0.19 6.5E-06 46.2 9.1 87 58-161 106-193 (204)
275 2dhr_A FTSH; AAA+ protein, hex 93.9 0.037 1.3E-06 59.5 4.5 36 225-261 64-101 (499)
276 1rj9_A FTSY, signal recognitio 93.9 0.029 1E-06 56.3 3.5 26 224-249 101-126 (304)
277 2i3b_A HCR-ntpase, human cance 93.9 0.022 7.4E-07 53.2 2.3 23 227-249 3-25 (189)
278 3hu3_A Transitional endoplasmi 93.9 0.041 1.4E-06 59.0 4.7 39 223-262 236-276 (489)
279 3m6a_A ATP-dependent protease 93.9 0.031 1.1E-06 60.6 3.8 35 224-259 107-143 (543)
280 3cf2_A TER ATPase, transitiona 93.9 0.031 1E-06 63.5 3.8 39 223-262 509-549 (806)
281 2qby_B CDC6 homolog 3, cell di 93.8 0.042 1.4E-06 55.7 4.4 26 223-248 43-68 (384)
282 2r44_A Uncharacterized protein 93.8 0.025 8.4E-07 56.7 2.6 27 227-254 48-74 (331)
283 1htw_A HI0065; nucleotide-bind 93.8 0.041 1.4E-06 49.8 3.9 27 223-249 31-57 (158)
284 3bwd_D RAC-like GTP-binding pr 93.8 0.038 1.3E-06 49.4 3.6 28 221-248 4-31 (182)
285 2v9p_A Replication protein E1; 93.8 0.034 1.2E-06 56.0 3.6 28 222-249 123-150 (305)
286 2iwr_A Centaurin gamma 1; ANK 93.8 0.03 1E-06 50.0 2.9 27 222-248 4-30 (178)
287 1z2a_A RAS-related protein RAB 93.8 0.035 1.2E-06 48.7 3.3 25 224-248 4-28 (168)
288 1n0w_A DNA repair protein RAD5 93.8 0.03 1E-06 52.8 3.1 25 224-248 23-47 (243)
289 2qby_A CDC6 homolog 1, cell di 93.7 0.036 1.2E-06 55.8 3.7 26 223-248 43-68 (386)
290 1ky3_A GTP-binding protein YPT 93.7 0.035 1.2E-06 49.3 3.3 26 223-248 6-31 (182)
291 3b9q_A Chloroplast SRP recepto 93.7 0.031 1.1E-06 56.1 3.1 27 223-249 98-124 (302)
292 3u61_B DNA polymerase accessor 93.7 0.041 1.4E-06 54.8 4.1 34 223-257 46-79 (324)
293 1ypw_A Transitional endoplasmi 93.7 0.039 1.3E-06 62.7 4.3 39 222-261 235-275 (806)
294 2lkc_A Translation initiation 93.6 0.052 1.8E-06 48.2 4.2 26 223-248 6-31 (178)
295 3uk6_A RUVB-like 2; hexameric 93.6 0.035 1.2E-06 56.1 3.4 25 225-249 70-94 (368)
296 2yvu_A Probable adenylyl-sulfa 93.6 0.11 3.7E-06 47.3 6.4 93 59-161 87-185 (186)
297 1np6_A Molybdopterin-guanine d 93.6 0.042 1.4E-06 50.6 3.6 24 225-248 6-29 (174)
298 2fn4_A P23, RAS-related protei 93.6 0.044 1.5E-06 48.6 3.7 26 223-248 7-32 (181)
299 2z4s_A Chromosomal replication 93.6 0.045 1.5E-06 57.7 4.2 38 225-262 130-173 (440)
300 1hqc_A RUVB; extended AAA-ATPa 93.6 0.028 9.7E-07 55.7 2.5 29 225-254 38-66 (324)
301 2eyu_A Twitching motility prot 93.5 0.038 1.3E-06 54.2 3.3 27 223-249 23-49 (261)
302 3t5g_A GTP-binding protein RHE 93.5 0.031 1.1E-06 50.1 2.5 25 224-248 5-29 (181)
303 3ake_A Cytidylate kinase; CMP 93.5 0.34 1.1E-05 44.4 9.7 83 58-158 119-207 (208)
304 1svi_A GTP-binding protein YSX 93.5 0.048 1.6E-06 49.4 3.7 27 222-248 20-46 (195)
305 3tqf_A HPR(Ser) kinase; transf 93.5 0.052 1.8E-06 50.4 3.9 33 225-259 16-48 (181)
306 2orw_A Thymidine kinase; TMTK, 93.5 0.037 1.3E-06 51.2 3.0 24 225-248 3-26 (184)
307 3te6_A Regulatory protein SIR3 93.4 0.03 1E-06 56.7 2.4 28 222-249 42-69 (318)
308 2ce2_X GTPase HRAS; signaling 93.4 0.044 1.5E-06 47.6 3.2 23 226-248 4-26 (166)
309 3tif_A Uncharacterized ABC tra 93.4 0.042 1.4E-06 52.9 3.3 27 222-248 28-54 (235)
310 1cr0_A DNA primase/helicase; R 93.4 0.044 1.5E-06 54.0 3.6 26 223-248 33-58 (296)
311 1kao_A RAP2A; GTP-binding prot 93.3 0.046 1.6E-06 47.6 3.3 24 225-248 3-26 (167)
312 1u8z_A RAS-related protein RAL 93.3 0.047 1.6E-06 47.6 3.3 24 225-248 4-27 (168)
313 2ged_A SR-beta, signal recogni 93.3 0.052 1.8E-06 49.2 3.7 27 223-249 46-72 (193)
314 1oix_A RAS-related protein RAB 93.3 0.043 1.5E-06 50.3 3.2 26 224-249 28-53 (191)
315 2f9l_A RAB11B, member RAS onco 93.3 0.047 1.6E-06 50.1 3.4 24 225-248 5-28 (199)
316 1nrj_B SR-beta, signal recogni 93.3 0.052 1.8E-06 50.4 3.7 27 223-249 10-36 (218)
317 2hxs_A RAB-26, RAS-related pro 93.3 0.057 1.9E-06 48.0 3.8 25 224-248 5-29 (178)
318 2dr3_A UPF0273 protein PH0284; 93.3 0.04 1.4E-06 52.0 3.0 24 224-247 22-45 (247)
319 2v1u_A Cell division control p 93.3 0.041 1.4E-06 55.5 3.2 26 223-248 42-67 (387)
320 2px0_A Flagellar biosynthesis 93.3 0.04 1.4E-06 55.1 3.1 26 224-249 104-129 (296)
321 2wjg_A FEOB, ferrous iron tran 93.2 0.053 1.8E-06 48.8 3.6 25 224-248 6-30 (188)
322 2f6r_A COA synthase, bifunctio 93.2 0.27 9.2E-06 48.4 9.0 89 57-161 181-270 (281)
323 1upt_A ARL1, ADP-ribosylation 93.2 0.06 2.1E-06 47.3 3.9 25 224-248 6-30 (171)
324 3kkq_A RAS-related protein M-R 93.2 0.056 1.9E-06 48.4 3.7 26 223-248 16-41 (183)
325 2wji_A Ferrous iron transport 93.2 0.05 1.7E-06 48.4 3.2 24 225-248 3-26 (165)
326 2f1r_A Molybdopterin-guanine d 93.1 0.021 7.1E-07 52.5 0.7 24 226-249 3-26 (171)
327 2atv_A RERG, RAS-like estrogen 93.1 0.056 1.9E-06 49.3 3.7 29 220-248 23-51 (196)
328 3b85_A Phosphate starvation-in 93.1 0.044 1.5E-06 51.9 3.0 23 225-247 22-44 (208)
329 2cbz_A Multidrug resistance-as 93.1 0.049 1.7E-06 52.5 3.3 27 222-248 28-54 (237)
330 2wsm_A Hydrogenase expression/ 93.1 0.054 1.8E-06 50.5 3.6 25 224-248 29-53 (221)
331 2og2_A Putative signal recogni 93.1 0.044 1.5E-06 56.4 3.2 27 223-249 155-181 (359)
332 2p5s_A RAS and EF-hand domain 93.1 0.055 1.9E-06 49.6 3.5 28 221-248 24-51 (199)
333 2nzj_A GTP-binding protein REM 93.1 0.055 1.9E-06 47.8 3.4 25 225-249 4-28 (175)
334 2pcj_A ABC transporter, lipopr 93.1 0.046 1.6E-06 52.2 3.0 26 223-248 28-53 (224)
335 1fnn_A CDC6P, cell division co 93.1 0.049 1.7E-06 55.1 3.4 24 226-249 45-68 (389)
336 1z0f_A RAB14, member RAS oncog 93.0 0.051 1.7E-06 48.1 3.1 27 223-249 13-39 (179)
337 3pqc_A Probable GTP-binding pr 93.0 0.063 2.1E-06 48.3 3.8 26 223-248 21-46 (195)
338 1g16_A RAS-related protein SEC 93.0 0.054 1.8E-06 47.5 3.2 24 225-248 3-26 (170)
339 3bc1_A RAS-related protein RAB 93.0 0.053 1.8E-06 48.6 3.2 26 223-248 9-34 (195)
340 1wms_A RAB-9, RAB9, RAS-relate 93.0 0.046 1.6E-06 48.5 2.8 25 224-248 6-30 (177)
341 2gf9_A RAS-related protein RAB 93.0 0.058 2E-06 48.9 3.5 26 223-248 20-45 (189)
342 1sxj_D Activator 1 41 kDa subu 92.9 0.048 1.7E-06 54.5 3.2 24 226-249 59-82 (353)
343 2onk_A Molybdate/tungstate ABC 92.9 0.056 1.9E-06 52.3 3.4 26 222-248 22-47 (240)
344 2hf9_A Probable hydrogenase ni 92.9 0.064 2.2E-06 50.1 3.7 25 224-248 37-61 (226)
345 1g8p_A Magnesium-chelatase 38 92.9 0.037 1.3E-06 55.4 2.2 22 228-249 48-69 (350)
346 1lw7_A Transcriptional regulat 92.9 0.045 1.5E-06 56.0 2.8 28 225-253 170-197 (365)
347 3dm5_A SRP54, signal recogniti 92.9 0.048 1.6E-06 57.7 3.1 25 224-248 99-123 (443)
348 1mv5_A LMRA, multidrug resista 92.9 0.057 1.9E-06 52.2 3.4 28 222-249 25-52 (243)
349 3oes_A GTPase rhebl1; small GT 92.8 0.057 2E-06 49.6 3.2 28 222-249 21-48 (201)
350 1zuh_A Shikimate kinase; alpha 92.8 0.19 6.3E-06 44.8 6.6 122 12-157 31-167 (168)
351 3kl4_A SRP54, signal recogniti 92.8 0.044 1.5E-06 57.8 2.7 25 224-248 96-120 (433)
352 1c1y_A RAS-related protein RAP 92.8 0.063 2.2E-06 46.9 3.3 24 225-248 3-26 (167)
353 2qen_A Walker-type ATPase; unk 92.7 0.072 2.5E-06 52.8 4.1 33 226-259 32-64 (350)
354 1b0u_A Histidine permease; ABC 92.7 0.058 2E-06 52.8 3.3 27 222-248 29-55 (262)
355 2yhs_A FTSY, cell division pro 92.7 0.061 2.1E-06 57.7 3.7 27 222-248 290-316 (503)
356 1ek0_A Protein (GTP-binding pr 92.7 0.054 1.9E-06 47.4 2.8 24 225-248 3-26 (170)
357 2erx_A GTP-binding protein DI- 92.7 0.063 2.2E-06 47.1 3.2 24 225-248 3-26 (172)
358 2h17_A ADP-ribosylation factor 92.7 0.058 2E-06 48.5 3.1 28 221-248 17-44 (181)
359 2g6b_A RAS-related protein RAB 92.7 0.063 2.2E-06 47.7 3.2 27 223-249 8-34 (180)
360 3tw8_B RAS-related protein RAB 92.7 0.055 1.9E-06 48.0 2.8 26 223-248 7-32 (181)
361 1sxj_E Activator 1 40 kDa subu 92.7 0.057 1.9E-06 54.2 3.2 23 225-248 37-59 (354)
362 3t1o_A Gliding protein MGLA; G 92.6 0.059 2E-06 48.6 3.0 27 223-249 12-38 (198)
363 2ixe_A Antigen peptide transpo 92.6 0.061 2.1E-06 53.0 3.3 28 222-249 42-69 (271)
364 2r2a_A Uncharacterized protein 92.6 0.07 2.4E-06 50.2 3.6 24 225-248 5-28 (199)
365 1m7b_A RND3/RHOE small GTP-bin 92.6 0.064 2.2E-06 48.4 3.2 26 223-248 5-30 (184)
366 2gj8_A MNME, tRNA modification 92.6 0.068 2.3E-06 48.0 3.4 24 225-248 4-27 (172)
367 1z08_A RAS-related protein RAB 92.6 0.059 2E-06 47.4 2.9 25 224-248 5-29 (170)
368 2a9k_A RAS-related protein RAL 92.6 0.068 2.3E-06 47.7 3.3 25 224-248 17-41 (187)
369 3gfo_A Cobalt import ATP-bindi 92.6 0.058 2E-06 53.4 3.1 26 223-248 32-57 (275)
370 2olj_A Amino acid ABC transpor 92.6 0.063 2.2E-06 52.7 3.3 27 222-248 47-73 (263)
371 2bme_A RAB4A, RAS-related prot 92.6 0.067 2.3E-06 47.9 3.2 25 224-248 9-33 (186)
372 4bas_A ADP-ribosylation factor 92.6 0.062 2.1E-06 48.7 3.0 28 221-248 13-40 (199)
373 1r2q_A RAS-related protein RAB 92.5 0.05 1.7E-06 47.6 2.3 25 224-248 5-29 (170)
374 2ff7_A Alpha-hemolysin translo 92.5 0.062 2.1E-06 52.2 3.2 27 222-248 32-58 (247)
375 2ghi_A Transport protein; mult 92.5 0.065 2.2E-06 52.4 3.3 28 222-249 43-70 (260)
376 3con_A GTPase NRAS; structural 92.5 0.062 2.1E-06 48.5 3.0 25 224-248 20-44 (190)
377 1nlf_A Regulatory protein REPA 92.5 0.059 2E-06 52.8 3.0 24 224-247 29-52 (279)
378 3q85_A GTP-binding protein REM 92.5 0.07 2.4E-06 46.9 3.2 23 226-248 3-25 (169)
379 1sxj_C Activator 1 40 kDa subu 92.5 0.059 2E-06 54.3 3.0 22 228-249 49-70 (340)
380 1u0j_A DNA replication protein 92.5 0.087 3E-06 52.0 4.2 25 225-249 104-128 (267)
381 1z0j_A RAB-22, RAS-related pro 92.5 0.071 2.4E-06 46.7 3.3 25 225-249 6-30 (170)
382 2oil_A CATX-8, RAS-related pro 92.5 0.069 2.3E-06 48.4 3.2 26 223-248 23-48 (193)
383 4dsu_A GTPase KRAS, isoform 2B 92.5 0.063 2.1E-06 48.1 2.9 24 225-248 4-27 (189)
384 1ji0_A ABC transporter; ATP bi 92.5 0.064 2.2E-06 51.7 3.2 26 223-248 30-55 (240)
385 2zu0_C Probable ATP-dependent 92.4 0.073 2.5E-06 52.3 3.6 26 222-247 43-68 (267)
386 2d2e_A SUFC protein; ABC-ATPas 92.4 0.071 2.4E-06 51.7 3.5 25 223-247 27-51 (250)
387 1g6h_A High-affinity branched- 92.4 0.065 2.2E-06 52.3 3.2 26 223-248 31-56 (257)
388 3q72_A GTP-binding protein RAD 92.4 0.073 2.5E-06 46.6 3.3 23 226-248 3-25 (166)
389 1vpl_A ABC transporter, ATP-bi 92.4 0.068 2.3E-06 52.3 3.3 27 222-248 38-64 (256)
390 1via_A Shikimate kinase; struc 92.4 0.22 7.5E-06 44.7 6.5 90 57-158 73-165 (175)
391 2zej_A Dardarin, leucine-rich 92.4 0.061 2.1E-06 48.7 2.7 22 226-247 3-24 (184)
392 1iqp_A RFCS; clamp loader, ext 92.4 0.074 2.5E-06 52.3 3.6 23 227-249 48-70 (327)
393 2gf0_A GTP-binding protein DI- 92.4 0.088 3E-06 47.7 3.9 26 223-248 6-31 (199)
394 2qm8_A GTPase/ATPase; G protei 92.4 0.076 2.6E-06 54.0 3.7 25 223-247 53-77 (337)
395 4g1u_C Hemin import ATP-bindin 92.4 0.066 2.2E-06 52.6 3.1 27 222-248 34-60 (266)
396 1moz_A ARL1, ADP-ribosylation 92.3 0.059 2E-06 48.1 2.6 25 223-247 16-40 (183)
397 1pzn_A RAD51, DNA repair and r 92.3 0.064 2.2E-06 54.8 3.1 27 223-249 129-155 (349)
398 2y8e_A RAB-protein 6, GH09086P 92.3 0.067 2.3E-06 47.3 2.9 24 225-248 14-37 (179)
399 1sgw_A Putative ABC transporte 92.3 0.061 2.1E-06 51.2 2.7 26 223-248 33-58 (214)
400 2qgz_A Helicase loader, putati 92.3 0.077 2.6E-06 53.2 3.6 38 225-262 152-194 (308)
401 2pze_A Cystic fibrosis transme 92.2 0.071 2.4E-06 51.1 3.1 27 223-249 32-58 (229)
402 2bov_A RAla, RAS-related prote 92.2 0.085 2.9E-06 48.1 3.6 25 224-248 13-37 (206)
403 3tkl_A RAS-related protein RAB 92.2 0.077 2.6E-06 48.0 3.2 27 223-249 14-40 (196)
404 1ksh_A ARF-like protein 2; sma 92.2 0.08 2.7E-06 47.6 3.3 26 223-248 16-41 (186)
405 1pui_A ENGB, probable GTP-bind 92.2 0.044 1.5E-06 50.5 1.5 26 223-248 24-49 (210)
406 1fzq_A ADP-ribosylation factor 92.2 0.086 3E-06 47.6 3.5 26 223-248 14-39 (181)
407 2efe_B Small GTP-binding prote 92.2 0.07 2.4E-06 47.5 2.9 26 223-248 10-35 (181)
408 3ihw_A Centg3; RAS, centaurin, 92.2 0.091 3.1E-06 47.7 3.7 26 223-248 18-43 (184)
409 2yz2_A Putative ABC transporte 92.2 0.076 2.6E-06 52.1 3.3 27 222-248 30-56 (266)
410 1zj6_A ADP-ribosylation factor 92.1 0.094 3.2E-06 47.3 3.7 26 223-248 14-39 (187)
411 2www_A Methylmalonic aciduria 92.1 0.087 3E-06 53.8 3.8 25 224-248 73-97 (349)
412 1zcb_A G alpha I/13; GTP-bindi 92.1 0.083 2.9E-06 54.3 3.6 25 222-246 30-54 (362)
413 2ewv_A Twitching motility prot 92.0 0.073 2.5E-06 54.9 3.2 27 223-249 134-160 (372)
414 3cbq_A GTP-binding protein REM 92.0 0.066 2.3E-06 49.3 2.6 25 223-247 21-45 (195)
415 1zbd_A Rabphilin-3A; G protein 92.0 0.083 2.9E-06 48.3 3.3 25 224-248 7-31 (203)
416 2qi9_C Vitamin B12 import ATP- 92.0 0.078 2.7E-06 51.6 3.1 26 223-248 24-49 (249)
417 1ojl_A Transcriptional regulat 92.0 0.091 3.1E-06 52.4 3.7 36 225-260 25-64 (304)
418 2chq_A Replication factor C sm 91.9 0.081 2.8E-06 51.9 3.3 23 227-249 40-62 (319)
419 3c5c_A RAS-like protein 12; GD 91.9 0.089 3E-06 47.8 3.3 27 222-248 18-44 (187)
420 1vg8_A RAS-related protein RAB 91.9 0.089 3E-06 48.1 3.3 26 223-248 6-31 (207)
421 3llu_A RAS-related GTP-binding 91.9 0.089 3E-06 48.1 3.3 28 222-249 17-44 (196)
422 2cxx_A Probable GTP-binding pr 91.9 0.081 2.8E-06 47.5 2.9 23 226-248 2-24 (190)
423 1r8s_A ADP-ribosylation factor 91.8 0.097 3.3E-06 45.7 3.3 22 227-248 2-23 (164)
424 2ihy_A ABC transporter, ATP-bi 91.8 0.083 2.8E-06 52.3 3.1 27 222-248 44-70 (279)
425 2nq2_C Hypothetical ABC transp 91.8 0.083 2.8E-06 51.5 3.1 26 223-248 29-54 (253)
426 3p32_A Probable GTPase RV1496/ 91.8 0.085 2.9E-06 53.8 3.3 26 223-248 77-102 (355)
427 1m2o_B GTP-binding protein SAR 91.8 0.092 3.1E-06 47.9 3.2 25 224-248 22-46 (190)
428 1z06_A RAS-related protein RAB 91.8 0.095 3.2E-06 47.4 3.3 26 223-248 18-43 (189)
429 1zu4_A FTSY; GTPase, signal re 91.8 0.084 2.9E-06 53.3 3.2 27 223-249 103-129 (320)
430 2j0v_A RAC-like GTP-binding pr 91.8 0.11 3.9E-06 47.8 3.9 28 221-248 5-32 (212)
431 1zd9_A ADP-ribosylation factor 91.8 0.088 3E-06 47.7 3.1 26 223-248 20-45 (188)
432 1sxj_B Activator 1 37 kDa subu 91.8 0.09 3.1E-06 51.6 3.3 23 227-249 44-66 (323)
433 2qu8_A Putative nucleolar GTP- 91.7 0.12 4.1E-06 48.6 4.0 26 223-248 27-52 (228)
434 2npi_A Protein CLP1; CLP1-PCF1 91.7 0.087 3E-06 56.0 3.3 28 222-249 135-162 (460)
435 2fg5_A RAB-22B, RAS-related pr 91.7 0.084 2.9E-06 48.0 2.8 26 223-248 21-46 (192)
436 2a5j_A RAS-related protein RAB 91.7 0.11 3.6E-06 47.2 3.5 26 223-248 19-44 (191)
437 3hr8_A Protein RECA; alpha and 91.6 0.087 3E-06 54.1 3.1 25 224-248 60-84 (356)
438 1mh1_A RAC1; GTP-binding, GTPa 91.6 0.099 3.4E-06 46.6 3.2 24 225-248 5-28 (186)
439 2vhj_A Ntpase P4, P4; non- hyd 91.6 0.1 3.6E-06 53.0 3.6 33 225-257 123-156 (331)
440 2v3c_C SRP54, signal recogniti 91.6 0.072 2.4E-06 56.2 2.5 26 224-249 98-123 (432)
441 2gza_A Type IV secretion syste 91.5 0.087 3E-06 54.0 3.1 26 224-249 174-199 (361)
442 1jr3_A DNA polymerase III subu 91.5 0.11 3.8E-06 52.2 3.8 26 224-249 37-62 (373)
443 2fh5_B SR-beta, signal recogni 91.5 0.11 3.6E-06 48.1 3.3 26 223-248 5-30 (214)
444 2q3h_A RAS homolog gene family 91.5 0.11 3.7E-06 47.5 3.3 27 222-248 17-43 (201)
445 3pxg_A Negative regulator of g 91.5 0.1 3.4E-06 55.4 3.6 26 224-249 200-225 (468)
446 3fvq_A Fe(3+) IONS import ATP- 91.4 0.11 3.6E-06 53.6 3.6 27 222-248 27-53 (359)
447 1ypw_A Transitional endoplasmi 91.4 0.045 1.5E-06 62.2 0.8 39 223-262 509-549 (806)
448 3lxx_A GTPase IMAP family memb 91.4 0.1 3.5E-06 49.5 3.2 27 223-249 27-53 (239)
449 2pjz_A Hypothetical protein ST 91.4 0.091 3.1E-06 51.6 2.9 26 221-247 27-52 (263)
450 2yyz_A Sugar ABC transporter, 91.4 0.11 3.8E-06 53.4 3.6 27 222-248 26-52 (359)
451 3reg_A RHO-like small GTPase; 91.4 0.099 3.4E-06 47.5 3.0 27 222-248 20-46 (194)
452 2il1_A RAB12; G-protein, GDP, 91.3 0.098 3.4E-06 47.6 2.9 26 223-248 24-49 (192)
453 3jvv_A Twitching mobility prot 91.3 0.1 3.5E-06 53.6 3.3 25 225-249 123-147 (356)
454 2h57_A ADP-ribosylation factor 91.3 0.083 2.9E-06 47.8 2.4 27 222-248 18-44 (190)
455 2b8t_A Thymidine kinase; deoxy 91.2 0.11 3.6E-06 49.9 3.1 26 224-249 11-36 (223)
456 3sop_A Neuronal-specific septi 91.2 0.1 3.5E-06 51.3 3.1 24 226-249 3-26 (270)
457 2it1_A 362AA long hypothetical 91.2 0.12 4.1E-06 53.2 3.6 27 222-248 26-52 (362)
458 3k53_A Ferrous iron transport 91.2 0.12 4.1E-06 50.3 3.5 25 225-249 3-27 (271)
459 3pxi_A Negative regulator of g 91.2 0.13 4.5E-06 57.7 4.3 36 227-262 523-562 (758)
460 3rlf_A Maltose/maltodextrin im 91.1 0.12 4.1E-06 53.6 3.6 27 222-248 26-52 (381)
461 2o52_A RAS-related protein RAB 91.1 0.1 3.5E-06 47.9 2.8 26 223-248 23-48 (200)
462 1yrb_A ATP(GTP)binding protein 91.1 0.14 4.8E-06 49.0 3.9 27 222-248 11-37 (262)
463 3cph_A RAS-related protein SEC 91.1 0.13 4.5E-06 47.1 3.6 26 223-248 18-43 (213)
464 1z47_A CYSA, putative ABC-tran 91.1 0.11 3.7E-06 53.4 3.2 26 223-248 39-64 (355)
465 3dz8_A RAS-related protein RAB 91.1 0.12 4.2E-06 46.8 3.2 27 223-249 21-47 (191)
466 2j1l_A RHO-related GTP-binding 91.0 0.12 4.1E-06 48.0 3.3 26 223-248 32-57 (214)
467 2b6h_A ADP-ribosylation factor 91.0 0.14 4.7E-06 46.8 3.6 26 223-248 27-52 (192)
468 2bbs_A Cystic fibrosis transme 91.0 0.11 3.9E-06 51.6 3.2 27 222-248 61-87 (290)
469 3nbx_X ATPase RAVA; AAA+ ATPas 91.0 0.09 3.1E-06 56.5 2.6 23 227-249 43-65 (500)
470 1v43_A Sugar-binding transport 91.0 0.13 4.3E-06 53.2 3.6 27 222-248 34-60 (372)
471 2j37_W Signal recognition part 91.0 0.11 3.6E-06 56.0 3.1 26 223-248 99-124 (504)
472 1x3s_A RAS-related protein RAB 91.0 0.14 4.6E-06 46.2 3.4 25 224-248 14-38 (195)
473 3nh6_A ATP-binding cassette SU 90.9 0.084 2.9E-06 53.1 2.1 28 222-249 77-104 (306)
474 2zts_A Putative uncharacterize 90.9 0.12 4.1E-06 48.7 3.1 23 224-246 29-51 (251)
475 2atx_A Small GTP binding prote 90.8 0.11 3.6E-06 47.2 2.5 25 224-248 17-41 (194)
476 1gwn_A RHO-related GTP-binding 90.8 0.13 4.5E-06 47.7 3.2 26 223-248 26-51 (205)
477 3tr0_A Guanylate kinase, GMP k 90.8 0.44 1.5E-05 43.5 6.8 90 57-160 97-187 (205)
478 2zr9_A Protein RECA, recombina 90.7 0.11 3.9E-06 53.0 3.0 25 224-248 60-84 (349)
479 1g29_1 MALK, maltose transport 90.7 0.12 4.2E-06 53.3 3.2 26 223-248 27-52 (372)
480 3lda_A DNA repair protein RAD5 90.7 0.12 4E-06 54.0 3.1 23 224-246 177-199 (400)
481 2ew1_A RAS-related protein RAB 90.7 0.13 4.4E-06 47.7 3.0 26 223-248 24-49 (201)
482 1r6b_X CLPA protein; AAA+, N-t 90.7 0.14 4.9E-06 57.4 4.0 35 227-262 490-526 (758)
483 1v5w_A DMC1, meiotic recombina 90.7 0.15 5.1E-06 51.8 3.7 26 223-248 120-145 (343)
484 2pt7_A CAG-ALFA; ATPase, prote 90.6 0.1 3.4E-06 52.9 2.5 25 225-249 171-195 (330)
485 2fv8_A H6, RHO-related GTP-bin 90.6 0.12 4E-06 47.7 2.8 25 224-248 24-48 (207)
486 2bcg_Y Protein YP2, GTP-bindin 90.6 0.13 4.5E-06 47.1 3.0 25 224-248 7-31 (206)
487 1f6b_A SAR1; gtpases, N-termin 90.6 0.13 4.6E-06 47.2 3.1 24 224-247 24-47 (198)
488 4gzl_A RAS-related C3 botulinu 90.5 0.15 5.3E-06 46.9 3.5 26 223-248 28-53 (204)
489 3kta_A Chromosome segregation 90.5 0.15 5E-06 46.1 3.2 24 226-249 27-50 (182)
490 3d31_A Sulfate/molybdate ABC t 90.5 0.1 3.5E-06 53.5 2.4 27 222-248 23-49 (348)
491 3kfv_A Tight junction protein 90.5 1.7 5.9E-05 43.5 11.3 139 227-405 147-289 (308)
492 2gco_A H9, RHO-related GTP-bin 90.5 0.15 5.2E-06 46.7 3.4 26 223-248 23-48 (201)
493 2xtp_A GTPase IMAP family memb 90.5 0.15 5.2E-06 49.0 3.5 26 223-248 20-45 (260)
494 1xx6_A Thymidine kinase; NESG, 90.4 0.15 5.1E-06 47.6 3.3 26 224-249 7-32 (191)
495 1j8m_F SRP54, signal recogniti 90.4 0.12 4.2E-06 51.5 2.8 24 225-248 98-121 (297)
496 2hup_A RAS-related protein RAB 90.3 0.14 4.9E-06 47.1 3.0 26 223-248 27-52 (201)
497 2fu5_C RAS-related protein RAB 90.3 0.097 3.3E-06 46.8 1.8 25 224-248 7-31 (183)
498 3tui_C Methionine import ATP-b 90.3 0.16 5.5E-06 52.3 3.6 27 222-248 51-77 (366)
499 3gd7_A Fusion complex of cysti 90.3 0.16 5.4E-06 52.9 3.6 26 222-247 44-69 (390)
500 2p67_A LAO/AO transport system 90.2 0.16 5.6E-06 51.4 3.6 26 223-248 54-79 (341)
No 1
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=100.00 E-value=6.7e-39 Score=311.63 Aligned_cols=180 Identities=27% Similarity=0.490 Sum_probs=165.0
Q ss_pred CCCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHH
Q psy11031 221 ERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAE 300 (520)
Q Consensus 221 ~~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~ 300 (520)
...++++|+|+|||||||||||++|+++| |+.|||+|++|| ++++.+|++|..++.++++|++||++++.+++.++
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~-g~~hIstGdllR---~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~ 100 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF-HFNHLSSGDLLR---AEVQSGSPKGKELKAMMERGELVPLEVVLALLKEA 100 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH-CCEEECHHHHHH---HHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH-CCceEcHHHHHH---HHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999999998 999999999999 88889999999999999999999999999999999
Q ss_pred HhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhh-----hc----cCCCCCHHHHHHHHHHHHHHhH
Q psy11031 301 MKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVL-----HK----GQIDNSVSAFRRRLELFRERTL 371 (520)
Q Consensus 301 l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~-----~r----~R~dD~~e~~~~Rl~~f~~~~~ 371 (520)
|.+ ...+.+||||||||||..||+.|++.+..++.||+|+|+++.+ +| +|.||+++.+++|++.|++++.
T Consensus 101 l~~-~~~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~~~~R~DD~~e~i~~Rl~~Y~~~t~ 179 (217)
T 3umf_A 101 MIK-LVDKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAETSNRVDDNEETIVKRFRTFNELTK 179 (217)
T ss_dssp HHH-HTTTCSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC------CHHHHHHHHHHHHHHHHHTH
T ss_pred Hhh-ccccccCcccccCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhcccccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 982 3445789999999999999999999998888999999999753 22 6889999999999999999999
Q ss_pred HHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031 372 PMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK 405 (520)
Q Consensus 372 ~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~ 405 (520)
|+++||++++.++.|||++++++||++|.+.|..
T Consensus 180 pl~~~Y~~~~~l~~Idg~~~~eeV~~~I~~~l~k 213 (217)
T 3umf_A 180 PVIEHYKQQNKVITIDASGTVDAIFDKVNHELQK 213 (217)
T ss_dssp HHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988763
No 2
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=100.00 E-value=5.4e-37 Score=296.09 Aligned_cols=169 Identities=21% Similarity=0.456 Sum_probs=154.9
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcccc
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKY 306 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~~ 306 (520)
+|+|+|||||||||||++|+++| |++|||+|+||| ++++.+|++|..++.++.+|++||++++.+++.+++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~-g~~~istGdllR---~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~---- 73 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK-GFVHISTGDILR---EAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFP---- 73 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-CCEEEEHHHHHH---HHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCC----
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-CCeEEcHHHHHH---HHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhc----
Confidence 69999999999999999999998 999999999999 8888999999999999999999999999999999887
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHhhc----CCCCCEEEecCChhhh-----hc------------------------cCCC
Q psy11031 307 TEADGIVIDGFPREMSQLIDFENKY----QIHPPMILIDCSKLVL-----HK------------------------GQID 353 (520)
Q Consensus 307 ~~~~G~ILDGFPrt~~Qae~l~~~~----~~p~~VI~Ld~~~~~~-----~r------------------------~R~d 353 (520)
...||||||||||..||+.|+..+ ..++.||+|+|+++.+ +| +|.|
T Consensus 74 -~~~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~~g~~l~~r~D 152 (206)
T 3sr0_A 74 -KHGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPPPGVKVIQRED 152 (206)
T ss_dssp -SSSCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCCTTCCCBCCGG
T ss_pred -cCCceEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeeeccCCCCCceecccCC
Confidence 246899999999999999997654 3466799999999753 22 4789
Q ss_pred CCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHH
Q psy11031 354 NSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLK 404 (520)
Q Consensus 354 D~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~ 404 (520)
|+++.+++|++.|++++.|+++||++++.++.|||++++++||++|.+.|.
T Consensus 153 D~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~~~I~~~l~ 203 (206)
T 3sr0_A 153 DKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIG 203 (206)
T ss_dssp GSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999998874
No 3
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=100.00 E-value=2.5e-34 Score=281.06 Aligned_cols=176 Identities=20% Similarity=0.354 Sum_probs=145.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhc
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKK 303 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~ 303 (520)
...++-|+|+|||||||||++|+++| |+.|||+|+++| ++.+.++++|+.+++++.+|+++|++++.+++.++|.
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~~-g~~~is~gdllR---~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~- 81 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEKF-GIPQISTGDMLR---AAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLK- 81 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHHH-TCCEECHHHHHH---HHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHH-
T ss_pred cccceeeECCCCCCHHHHHHHHHHHh-CCCeeechHHHH---HhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHh-
Confidence 34678999999999999999999998 999999999999 7778899999999999999999999999999999999
Q ss_pred cccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhh-----hc-----------------------------
Q psy11031 304 TKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVL-----HK----------------------------- 349 (520)
Q Consensus 304 ~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~-----~r----------------------------- 349 (520)
+.++.+||||||||||..||+.|++....++.||+|+||++.+ +|
T Consensus 82 -~~~~~~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~~~~~d~~g~~ 160 (230)
T 3gmt_A 82 -EADCANGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEP 160 (230)
T ss_dssp -SGGGTTCEEEESCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCB
T ss_pred -CcccCCCeEecCCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCCcccccCCcccccCCCCCccCcCCCccCc
Confidence 6778889999999999999999998777788899999999752 11
Q ss_pred --cCCCCCHHHHHHHHHHHHHHhHHHHHHhhhC-----------CCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031 350 --GQIDNSVSAFRRRLELFRERTLPMLRAMDVE-----------TRLTIVDGDTQLPQVREEFERVLKK 405 (520)
Q Consensus 350 --~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~-----------~~l~~IDa~~~~e~V~~~I~~~I~~ 405 (520)
+|.||+++.+++|++.|++++.|+++||++. +.++.|||++++++|++.|.+.|.+
T Consensus 161 L~~R~DD~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~~~~~~~~~~l~~idg~~~~~eV~~~i~~~l~~ 229 (230)
T 3gmt_A 161 LVQRDDDKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRARVRRAQVS 229 (230)
T ss_dssp CBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCCCEEEEECC-----------------
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCeEEEEECCCCHHHHHHHHHHHHhc
Confidence 3889999999999999999999999999873 7899999999999999999988754
No 4
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=99.96 E-value=5.1e-30 Score=249.12 Aligned_cols=150 Identities=15% Similarity=0.251 Sum_probs=128.6
Q ss_pred ccccCcccCcHHHHHHHHHHcc----------CCCCCCCCHHHHHHHHHHHHhcC-CCCCcEEEeCCCCCHHhHHHHHHh
Q psy11031 10 SLLDFPSHRNPLKMFNLFVSEE----------VKDFSFLSSKTVTEVLMLEMKMS-PAAKAFLISGYPRNMRDVVEYSDK 78 (520)
Q Consensus 10 ~~~~~~~h~s~G~~l~~~i~~G----------~~~g~lVPdelv~~ll~~~l~~~-~~~~G~ILDGFPRt~~QA~~~~~~ 78 (520)
+-++++ |+|+|+++++.+.++ +++|.+|||++++++|.++|.+. .+.+||||||||||..||+.|.+.
T Consensus 51 ~~~g~~-hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l~~~~~~~~g~ilDGfPRt~~Qa~~l~~~ 129 (217)
T 3umf_A 51 QKFHFN-HLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMIKLVDKNCHFLIDGYPRELDQGIKFEKE 129 (217)
T ss_dssp HHHCCE-EECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHTTTCSEEEEETBCSSHHHHHHHHHH
T ss_pred HHHCCc-eEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHHhhccccccCcccccCCCcHHHHHHHHHh
Confidence 345788 999999888765544 23556999999999999999763 467899999999999999999988
Q ss_pred cCCcCEEEEEEcCHHHHHHHh-hhCccCCccc--hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHH
Q psy11031 79 IKTINGVILIAWRQSLLERQI-DYGAKLGHVI--LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRT 155 (520)
Q Consensus 79 ~~~pd~VI~L~~pd~~l~~Rl-~rg~~~~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~ 155 (520)
+..+++||+|+||++++.+|+ .|+..++|.| ++++++||+.|+++|.||++||++++++++|||++++++||++|.+
T Consensus 130 ~~~~~~vi~l~v~~e~~~~Rl~~R~~~~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~eeV~~~I~~ 209 (217)
T 3umf_A 130 VCPCLCVINFDVSEEVMRKRLLKRAETSNRVDDNEETIVKRFRTFNELTKPVIEHYKQQNKVITIDASGTVDAIFDKVNH 209 (217)
T ss_dssp TCCCSEEEEEECCHHHHHHHHSCC------CHHHHHHHHHHHHHHHHHTHHHHHHHHTTTCEEEEETTSCHHHHHHHHHH
T ss_pred CCccCEEEeccCCHHHHHHHHhcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHH
Confidence 999999999999999999999 5776678885 8899999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q psy11031 156 AVLKI 160 (520)
Q Consensus 156 ~l~~~ 160 (520)
.|+..
T Consensus 210 ~l~k~ 214 (217)
T 3umf_A 210 ELQKF 214 (217)
T ss_dssp HHHTT
T ss_pred HHHHc
Confidence 99753
No 5
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.96 E-value=1.9e-28 Score=241.34 Aligned_cols=176 Identities=20% Similarity=0.385 Sum_probs=159.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMK 302 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~ 302 (520)
..|.+|+|+|+|||||||+|++|+++| |+.|+|+++++| +....+++.|..+++++.+|..+|++++..++..++.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~-g~~~is~~~~~r---~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~ 102 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH-CYCHLSTGDLLR---EAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLK 102 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH-CCEEEEHHHHHH---HHTTSSSHHHHHHHHHHHTTCCCCHHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh-CCeEEecHHHHH---HHHhccchHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence 467899999999999999999999998 999999999999 7777899999999999999999999999999999998
Q ss_pred ccccCCCcEEEEeCCCCCHHHHHHHHhhc----CCCCCEEEecCChhhh-----hc------------------------
Q psy11031 303 KTKYTEADGIVIDGFPREMSQLIDFENKY----QIHPPMILIDCSKLVL-----HK------------------------ 349 (520)
Q Consensus 303 ~~~~~~~~G~ILDGFPrt~~Qae~l~~~~----~~p~~VI~Ld~~~~~~-----~r------------------------ 349 (520)
...+.++|||||||++..|++.|++.+ ..++.||+|+||++.+ +|
T Consensus 103 --~~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~ 180 (243)
T 3tlx_A 103 --TPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDD 180 (243)
T ss_dssp --SGGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCT
T ss_pred --cccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCCcccCcccccccCCCcccCccc
Confidence 667789999999999999999987653 4567899999999753 12
Q ss_pred -------cCCCCCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHH
Q psy11031 350 -------GQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLK 404 (520)
Q Consensus 350 -------~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~ 404 (520)
+|.||+++.+++|+..|++++.++.+||...+.++.|||+.++++|++.|.+.|.
T Consensus 181 ~~~~~l~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 242 (243)
T 3tlx_A 181 VTNEPLIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQHID 242 (243)
T ss_dssp TTCCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred cccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHc
Confidence 2667899999999999999999999999999999999999999999999998764
No 6
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=99.96 E-value=1.1e-28 Score=238.07 Aligned_cols=146 Identities=12% Similarity=0.266 Sum_probs=123.3
Q ss_pred ccccCcccCcHHHHHHHHHHcc----------CCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHH--
Q psy11031 10 SLLDFPSHRNPLKMFNLFVSEE----------VKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSD-- 77 (520)
Q Consensus 10 ~~~~~~~h~s~G~~l~~~i~~G----------~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~-- 77 (520)
+-++++ |+|+|+++|+.+.++ +++|.+|||++++++|.++|.+ ..||||||||||..||+.|..
T Consensus 22 ~~~g~~-~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~---~~~~ilDGfPRt~~Qa~~l~~~l 97 (206)
T 3sr0_A 22 KEKGFV-HISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPK---HGNVIFDGFPRTVKQAEALDEML 97 (206)
T ss_dssp HHHCCE-EEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCS---SSCEEEESCCCSHHHHHHHHHHH
T ss_pred HHHCCe-EEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhcc---CCceEecCCchhHHHHHHHHhhH
Confidence 446788 999999988766554 2466699999999999999964 468999999999999977643
Q ss_pred --hcCCcCEEEEEEcCHHHHHHHh-hh------Ccc--------------CCccc--hHHHHHHHHHHHhccchHHHHhh
Q psy11031 78 --KIKTINGVILIAWRQSLLERQI-DY------GAK--------------LGHVI--LSLARMELANFYQNVTPVTDFFD 132 (520)
Q Consensus 78 --~~~~pd~VI~L~~pd~~l~~Rl-~r------g~~--------------~~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y~ 132 (520)
.+..+++||+|+||++++.+|+ +| |.. ..|.| ++++++||+.|+++|.||++||+
T Consensus 98 ~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~~g~~l~~r~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~ 177 (206)
T 3sr0_A 98 EKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPPPGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYYK 177 (206)
T ss_dssp HHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCCTTCCCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeeeccCCCCCceecccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999999 33 221 23443 89999999999999999999999
Q ss_pred hCCcEEEEeCCCChHHHHHHHHHHHHH
Q psy11031 133 QRGMLIAVNGERNPVEVYADFRTAVLK 159 (520)
Q Consensus 133 ~~~~l~~Ida~~~~eeV~~~i~~~l~~ 159 (520)
++++++.|||++++++||++|+++|..
T Consensus 178 ~~~~l~~Idg~~~~~eV~~~I~~~l~e 204 (206)
T 3sr0_A 178 KKGILRIIDASKPVEEVYRQVLEVIGD 204 (206)
T ss_dssp TTTCEEEEETTSCHHHHHHHHHHHHC-
T ss_pred hcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence 999999999999999999999998853
No 7
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.94 E-value=1.4e-26 Score=222.39 Aligned_cols=172 Identities=26% Similarity=0.416 Sum_probs=155.4
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcccc
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKY 306 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~~ 306 (520)
+|+|+|+|||||||+|+.|++++ |+.++++++++| +....+++.|..+++++..|..+|++++.+++..++. ..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~-~~~~i~~d~~~r---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~--~~ 75 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY-GIPHISTGDMFR---AAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLG--KD 75 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS-SCCEEEHHHHHH---HHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHT--SG
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCcEEeHHHHHH---HHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cc
Confidence 58999999999999999999998 999999999999 7777889999999999999999999999999999998 56
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHhhcC----CCCCEEEecCChhhh-----hc----------------------------
Q psy11031 307 TEADGIVIDGFPREMSQLIDFENKYQ----IHPPMILIDCSKLVL-----HK---------------------------- 349 (520)
Q Consensus 307 ~~~~G~ILDGFPrt~~Qae~l~~~~~----~p~~VI~Ld~~~~~~-----~r---------------------------- 349 (520)
.++.+|||||||++..|++.|.+.+. .++.||+|+||++.+ .|
T Consensus 76 ~~~~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~ 155 (216)
T 3dl0_A 76 DCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGG 155 (216)
T ss_dssp GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEEEETTTCCEEETTTBCCSSTTBCTTTCC
T ss_pred cccCCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCCcCCccCCccccccCCCcccCccccccc
Confidence 67889999999999999998887542 456799999999753 22
Q ss_pred ---cCCCCCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHH
Q psy11031 350 ---GQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLK 404 (520)
Q Consensus 350 ---~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~ 404 (520)
+|.+|+++.+++|++.|++.+.++.+||...+.++.||+++++++|+++|.+.|.
T Consensus 156 ~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~ 213 (216)
T 3dl0_A 156 ELYQRADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVLLG 213 (216)
T ss_dssp BEECCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHG
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence 3478999999999999999999999999988889999999999999999998875
No 8
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.94 E-value=3.8e-26 Score=222.86 Aligned_cols=179 Identities=20% Similarity=0.376 Sum_probs=155.9
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHH
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEM 301 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l 301 (520)
...+.+|+|+|+|||||||+|+.|++++ |+.+++++++++ +....+++.|+.+++++..|..+|++++.+++..++
T Consensus 13 ~~~~~~I~l~G~~GsGKsT~a~~La~~l-~~~~i~~d~li~---~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l 88 (233)
T 1ak2_A 13 SPKGVRAVLLGPPGAGKGTQAPKLAKNF-CVCHLATGDMLR---AMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNL 88 (233)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHHH-TCEEEEHHHHHH---HHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh-CCceecHHHHHH---HHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHH
Confidence 3456789999999999999999999998 999999999999 666677889999999999999999999999999999
Q ss_pred hccccCCCcEEEEeCCCCCHHHHHHHHhhc----CCCCCEEEecCChhhh-----hc-----------------------
Q psy11031 302 KKTKYTEADGIVIDGFPREMSQLIDFENKY----QIHPPMILIDCSKLVL-----HK----------------------- 349 (520)
Q Consensus 302 ~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~----~~p~~VI~Ld~~~~~~-----~r----------------------- 349 (520)
. ...++.|||+||||++..|++.|.+.+ ..++.||+|+|+++.+ .|
T Consensus 89 ~--~~~~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~ 166 (233)
T 1ak2_A 89 E--TPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKD 166 (233)
T ss_dssp T--SGGGTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECTTTCCEEBTTTBCCSSTTBC
T ss_pred h--cccccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCccCCccccccCCCcccccc
Confidence 8 555678999999999999999876543 3467899999998753 12
Q ss_pred --------cCCCCCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHH
Q psy11031 350 --------GQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKI 406 (520)
Q Consensus 350 --------~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~ 406 (520)
.|.+|+.+.+++|+..|++.+.+++++|...+.++.|||++++++|++.|.+.|...
T Consensus 167 ~~~~~~l~~r~d~~~~~~~~r~~~y~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~I~~~l~~~ 231 (233)
T 1ak2_A 167 DITGEPLIRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFSKA 231 (233)
T ss_dssp TTTCCBCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHhh
Confidence 145678899999999999999999999987778999999999999999999888653
No 9
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.94 E-value=1.9e-26 Score=222.69 Aligned_cols=172 Identities=23% Similarity=0.442 Sum_probs=149.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcc
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKT 304 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~ 304 (520)
..+|+|+|+|||||||+|+.|++++ |+.|++++++++ +....+++.|..+++++..|+.+|++++.+++..++.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l-~~~~i~~d~li~---~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~-- 78 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY-GLAHLSTGDMLR---EAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFD-- 78 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH-CCEEEEHHHHHH---HHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHH--
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh-CceEEehhHHHH---HHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHh--
Confidence 3579999999999999999999998 999999999999 6777888999999999999999999999999999998
Q ss_pred ccCCCcEEEEeCCCCCHHHHHHHHhh----cCCCCCEEEecCChhhhh-----c--------------------------
Q psy11031 305 KYTEADGIVIDGFPREMSQLIDFENK----YQIHPPMILIDCSKLVLH-----K-------------------------- 349 (520)
Q Consensus 305 ~~~~~~G~ILDGFPrt~~Qae~l~~~----~~~p~~VI~Ld~~~~~~~-----r-------------------------- 349 (520)
...++.|||+||||++..|++.|.+. ...++.||+|+|+++.+. |
T Consensus 79 ~~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~ 158 (217)
T 3be4_A 79 LGVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCTHPASGRIYHVKYNPPKQPGIDDVT 158 (217)
T ss_dssp TTTTTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTT
T ss_pred ccccCCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCccccCccccccCCCCcccccccc
Confidence 56678899999999999999988742 235678999999997531 1
Q ss_pred -----cCCCCCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHH
Q psy11031 350 -----GQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERV 402 (520)
Q Consensus 350 -----~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~ 402 (520)
+|.+|+.+.+++|+..|++.+.+++++|...+.++.|||++++++|++.|.+.
T Consensus 159 ~~~l~~~~dd~~e~v~~r~~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~ 216 (217)
T 3be4_A 159 GEPLVWRDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKLPPKEVTEQIKKI 216 (217)
T ss_dssp CCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHhh
Confidence 13457889999999999999999999998777899999999999999999765
No 10
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=99.94 E-value=5.1e-27 Score=229.38 Aligned_cols=147 Identities=14% Similarity=0.197 Sum_probs=110.5
Q ss_pred ccCcccCcHHHHHHHHHHcc----------CCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHhcCC
Q psy11031 12 LDFPSHRNPLKMFNLFVSEE----------VKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKT 81 (520)
Q Consensus 12 ~~~~~h~s~G~~l~~~i~~G----------~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~~~~ 81 (520)
++++ |+++|+++++.+.+| +.+|.+|||++++++|.++|.+.++.+||||||||||..||+.|.+.+..
T Consensus 32 ~g~~-~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~~~~g~ILDGfPRt~~Qa~~L~~~~~~ 110 (230)
T 3gmt_A 32 FGIP-QISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCANGYLFDGFPRTIAQADAMKEAGVA 110 (230)
T ss_dssp HTCC-EECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGGGTTCEEEESCCCSHHHHHHHHHTTCC
T ss_pred hCCC-eeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCcccCCCeEecCCCCcHHHHHHHHHhCCC
Confidence 5677 888888887765444 23566999999999999999876788899999999999999888877789
Q ss_pred cCEEEEEEcCHHHHHHHhh-hCc--cC-------------------------Cccc--hHHHHHHHHHHHhccchHHHHh
Q psy11031 82 INGVILIAWRQSLLERQID-YGA--KL-------------------------GHVI--LSLARMELANFYQNVTPVTDFF 131 (520)
Q Consensus 82 pd~VI~L~~pd~~l~~Rl~-rg~--~~-------------------------~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y 131 (520)
+|+||+|+||++++.+|+. |+. .+ .|.| ++++++||+.|+++|.||++||
T Consensus 111 ~d~VI~Ldvp~e~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~~~~~d~~g~~L~~R~DD~~e~i~~Rl~~y~~~t~pl~~~Y 190 (230)
T 3gmt_A 111 IDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQTKPLITYY 190 (230)
T ss_dssp CSEEEEECCCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEeCCHHHHHHHHHcCCcccccCCcccccCCCCCccCcCCCccCccccCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999993 321 11 2554 8999999999999999999999
Q ss_pred hhC-----------CcEEEEeCCCChHHHHHHHHHHHHH
Q psy11031 132 DQR-----------GMLIAVNGERNPVEVYADFRTAVLK 159 (520)
Q Consensus 132 ~~~-----------~~l~~Ida~~~~eeV~~~i~~~l~~ 159 (520)
++. |++++|||++++++||++|++++.+
T Consensus 191 ~~~~~~~~~~~~~~~~l~~idg~~~~~eV~~~i~~~l~~ 229 (230)
T 3gmt_A 191 GDWARRGAENGLKAPAYRKISGLGAVEEIRARVRRAQVS 229 (230)
T ss_dssp HHHHHHCCBTTBCCCEEEEECC-----------------
T ss_pred HhhhcccccccccCCeEEEEECCCCHHHHHHHHHHHHhc
Confidence 973 8999999999999999999988753
No 11
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.94 E-value=3.6e-26 Score=219.85 Aligned_cols=171 Identities=25% Similarity=0.446 Sum_probs=151.6
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcccc
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKY 306 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~~ 306 (520)
+|+|+|+|||||||+|+.|++++ |+.++++++++| +....+++.|..+++++..|..+|++++.+++..++. ..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~-g~~~i~~d~~~r---~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~--~~ 75 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY-GIPQISTGDMLR---AAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIA--QE 75 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH-CCCEEEHHHHHH---HHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHT--SG
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCeEEeHHHHHH---HHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHh--cc
Confidence 59999999999999999999998 999999999999 6667788999999999999999999999999999998 45
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhh-----hc-------------------------------c
Q psy11031 307 TEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVL-----HK-------------------------------G 350 (520)
Q Consensus 307 ~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~-----~r-------------------------------~ 350 (520)
.+..+||+||||++..|+..|......++.||+|+|+.+.+ .| +
T Consensus 76 ~~~~~~i~dg~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~pp~~~~~~~~~~~~l~~ 155 (214)
T 1e4v_A 76 DCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTT 155 (214)
T ss_dssp GGGGCEEEESCCCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBC
T ss_pred ccCCCEEEeCCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHCCcccCCcCCcccccCCCCCcccccccccccccc
Confidence 55679999999999999999987655677899999998742 11 2
Q ss_pred CCCCCHHHHHHHHHHHHHHhHHHHHHhhhC-----CCEEEEECCCCHHHHHHHHHHHH
Q psy11031 351 QIDNSVSAFRRRLELFRERTLPMLRAMDVE-----TRLTIVDGDTQLPQVREEFERVL 403 (520)
Q Consensus 351 R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~-----~~l~~IDa~~~~e~V~~~I~~~I 403 (520)
|.+|+.+.+++|++.|++.+.+++++|.+. +.++.|||++++++|++.|.+.|
T Consensus 156 r~dd~~~~~~~rl~~y~~~~~~l~~~~~~~~~~~~~~~~~ida~~~~~~v~~~i~~~l 213 (214)
T 1e4v_A 156 RKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL 213 (214)
T ss_dssp CTTCSHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 667889999999999999999999999864 57899999999999999998765
No 12
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.94 E-value=5e-26 Score=218.33 Aligned_cols=173 Identities=23% Similarity=0.411 Sum_probs=155.3
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcccc
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKY 306 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~~ 306 (520)
+|+|+|+|||||||+|+.|++++ |+.++++++++| +....+++.|..+++++..|..+|++++.+++..++. ..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~-~~~~i~~d~~~r---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~--~~ 75 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY-EIPHISTGDMFR---AAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLS--KD 75 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-CCCEEEHHHHHH---HHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHT--SG
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCcEeeHHHHHH---HHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cc
Confidence 68999999999999999999998 999999999999 7777888999999999999999999999999999998 55
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHhhcC----CCCCEEEecCChhhhh-----c----------------------------
Q psy11031 307 TEADGIVIDGFPREMSQLIDFENKYQ----IHPPMILIDCSKLVLH-----K---------------------------- 349 (520)
Q Consensus 307 ~~~~G~ILDGFPrt~~Qae~l~~~~~----~p~~VI~Ld~~~~~~~-----r---------------------------- 349 (520)
.++.+||+||||++..|++.|.+.+. .++.||+|+||++.+. |
T Consensus 76 ~~~~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~ 155 (216)
T 3fb4_A 76 DCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGG 155 (216)
T ss_dssp GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEEEETTTCCEEETTTBCCSSTTBCTTTCC
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCccCCccccccCCCCcccccccccC
Confidence 66889999999999999998887542 3567999999987532 2
Q ss_pred ---cCCCCCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031 350 ---GQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK 405 (520)
Q Consensus 350 ---~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~ 405 (520)
+|.+|+++.+++|+..|++.+.++.+||...+.++.||+++++++|++.|.+.|..
T Consensus 156 ~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (216)
T 3fb4_A 156 ELYQRIDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDLLGG 214 (216)
T ss_dssp BEECCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHT
T ss_pred ccccCCCCCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHHHHh
Confidence 24688999999999999999999999999988999999999999999999988753
No 13
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.93 E-value=1.4e-25 Score=216.38 Aligned_cols=176 Identities=19% Similarity=0.360 Sum_probs=151.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhc
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKK 303 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~ 303 (520)
++.+|+|+|+|||||||+|+.|++++ |+.+++++++++ +....+++.|..+++++..|..+|++.+..++..++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l-~~~~i~~d~~~~---~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~ 78 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF-HAAHLATGDMLR---SQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTN 78 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH-CCEEEEHHHHHH---HHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc-CceEEehhHHHH---HHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHh
Confidence 35789999999999999999999997 999999999999 66677889999999999999999999999999988862
Q ss_pred cccCCCcEEEEeCCCCCHHHHHHHHhh----cCCCCCEEEecCChhhh-----hc-------------------------
Q psy11031 304 TKYTEADGIVIDGFPREMSQLIDFENK----YQIHPPMILIDCSKLVL-----HK------------------------- 349 (520)
Q Consensus 304 ~~~~~~~G~ILDGFPrt~~Qae~l~~~----~~~p~~VI~Ld~~~~~~-----~r------------------------- 349 (520)
...++.|||+||||++..|++.|... ...++.+|+|+|+.+.+ .|
T Consensus 79 -~~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~d~~ 157 (220)
T 1aky_A 79 -NPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDV 157 (220)
T ss_dssp -CGGGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTT
T ss_pred -ccccCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCccCccCCccccccCCCcccccccc
Confidence 23456799999999999999877653 23466799999998752 11
Q ss_pred ------cCCCCCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHH
Q psy11031 350 ------GQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLK 404 (520)
Q Consensus 350 ------~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~ 404 (520)
+|.+|+.+.+++|++.|++.+.+++++|.+.+.++.|||++++++|++.|.+.|.
T Consensus 158 ~~~~l~~r~dd~~~~~~~rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 218 (220)
T 1aky_A 158 TGEALVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLG 218 (220)
T ss_dssp TCCBCBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTSCHHHHHHHHHHHHT
T ss_pred cccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 1456788999999999999999999999877789999999999999999988764
No 14
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.92 E-value=1e-24 Score=211.70 Aligned_cols=170 Identities=21% Similarity=0.313 Sum_probs=147.4
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcccc
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKY 306 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~~ 306 (520)
+|+|+|+|||||||+|+.|++++ |+.++++++++| +....+++.|+.+++++.+|+.+|++++.+++..++. ..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l-g~~~i~~dd~~r---~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~--~~ 75 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY-SLAHIESGGIFR---EHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLE--SK 75 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH-TCEEEEHHHHHH---HHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHH--HH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCeEEchHHHHH---HHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHh--cc
Confidence 69999999999999999999997 999999999999 6666788899999999999999999999999999988 33
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHhh----cCCCCCEEEecCChhhhh-----cc---------------------------
Q psy11031 307 TEADGIVIDGFPREMSQLIDFENK----YQIHPPMILIDCSKLVLH-----KG--------------------------- 350 (520)
Q Consensus 307 ~~~~G~ILDGFPrt~~Qae~l~~~----~~~p~~VI~Ld~~~~~~~-----r~--------------------------- 350 (520)
. +.+||+||||++..|++.|.+. ...++.||+|+|+++.+. |+
T Consensus 76 ~-g~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~g~~y~~~~~~p~~~~~~~~~~ 154 (223)
T 2xb4_A 76 G-KDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRICKNNPNHPNNIFIDAIKPNGDVCRVC 154 (223)
T ss_dssp C-TTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBCEESSCTTSCCBTTCGGGCCBTTBCTTT
T ss_pred c-CCeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcccCCccccCCccccccCCCcccccccccc
Confidence 3 7899999999999999998764 235678999999997531 21
Q ss_pred ------CCCCCHH-HHHHHHHHHHHHhHHHHH---Hhhh-----CCCEEEEECCCCHHHHHHHHHHHH
Q psy11031 351 ------QIDNSVS-AFRRRLELFRERTLPMLR---AMDV-----ETRLTIVDGDTQLPQVREEFERVL 403 (520)
Q Consensus 351 ------R~dD~~e-~~~~Rl~~f~~~~~~l~~---~y~~-----~~~l~~IDa~~~~e~V~~~I~~~I 403 (520)
|.+|+.+ .+++|+..|++.+.|+.+ +|.. .+.++.|||++++++|++.|.+.|
T Consensus 155 ~~~l~~r~dd~~e~~i~~rl~~~~~~~~p~~~~~~~y~~~a~~~~~~~~~ida~~~~~~v~~~i~~~l 222 (223)
T 2xb4_A 155 GGALSARADDQDEGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGSIDSIKDTLLAQL 222 (223)
T ss_dssp CCBEECCGGGGCHHHHHHHHHHHTCTTTSHHHHHHHHHTTHHHHTCEEEEEETTSCHHHHHHHHHHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHHhHHHHHhhHHHHhhhhhccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 2345577 999999999999999999 9976 567899999999999999998765
No 15
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.92 E-value=1.5e-24 Score=209.51 Aligned_cols=181 Identities=25% Similarity=0.453 Sum_probs=154.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhc
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKK 303 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~ 303 (520)
.+.+|+|+|+|||||||+|+.|++++ |+.|++++++++ .....++..|..+++++.+|+.+|++.+..++..++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l-~~~~i~~d~~~~---~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~- 78 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY-QLAHISAGDLLR---AEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLR- 78 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH-CCEECCHHHHHH---HHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-CCceecHHHHHH---HHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHh-
Confidence 45789999999999999999999997 999999999999 6666788899999999999999999999998888887
Q ss_pred cccCC-CcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-----c---------------------------c
Q psy11031 304 TKYTE-ADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-----K---------------------------G 350 (520)
Q Consensus 304 ~~~~~-~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-----r---------------------------~ 350 (520)
...+ ..||||||||++.+|++.|.+....++.||+|+|+.+.+. | +
T Consensus 79 -~~~~~~~~~vidg~~~~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~ 157 (222)
T 1zak_A 79 -QPDAQENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQ 157 (222)
T ss_dssp -SHHHHHTCEEEESCCCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGGGGCBC
T ss_pred -hccccCCcEEEECCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCccccccccccc
Confidence 3333 5689999999999999999876656788999999987531 1 1
Q ss_pred CCCCCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHh
Q psy11031 351 QIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDDLEN 412 (520)
Q Consensus 351 R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~~~~~ 412 (520)
|.+|..+.+++|+..|+....++.++|.. .++.||++.++++|++.|.+.|...+....+
T Consensus 158 r~~d~~~~i~~Rl~~~~~~~~~l~~~y~~--~~~~Id~~~~~~ev~~~I~~~l~~~l~~~~~ 217 (222)
T 1zak_A 158 RFDDTEEKVKLRLETYYQNIESLLSTYEN--IIVKVQGDATVDAVFAKIDELLGSILEKKNE 217 (222)
T ss_dssp CTTCCTTHHHHHHHHHHHHHHHHHHTTCC--CEEEEECSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHh--cEEEEECCCCHHHHHHHHHHHHHhhcccccc
Confidence 23567888999999999999999999964 4889999999999999999999887765544
No 16
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.92 E-value=2e-23 Score=198.27 Aligned_cols=180 Identities=24% Similarity=0.579 Sum_probs=152.8
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcc-cccCCcchHHHHhhhhcCCccchHHHHHHHHHH
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANI-EDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAE 300 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~-~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~ 300 (520)
+..+.+|+|+|+|||||||+|+.|++++ |+.+++++++++ .. ...++..++.++.++.+|+..|++++..++.+.
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~-g~~~i~~d~~~~---~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~ 87 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDY-SFVHLSAGDLLR---AEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNA 87 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHS-SCEEEEHHHHHH---HHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHc-CceEEeHHHHHH---HHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHH
Confidence 4557899999999999999999999998 999999999999 44 236788899999999999999998888888777
Q ss_pred HhccccCCC-cEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-----c----cCCCCCHHHHHHHHHHHHHHh
Q psy11031 301 MKKTKYTEA-DGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-----K----GQIDNSVSAFRRRLELFRERT 370 (520)
Q Consensus 301 l~~~~~~~~-~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-----r----~R~dD~~e~~~~Rl~~f~~~~ 370 (520)
+.. ....+ .+||+||||++.+++..|+..+..++.+|+|+||.+.+. | +|.+++.+.+++|+..|.+..
T Consensus 88 i~~-~l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~~~~~~~~~~~e~~~~r~~~~~~~~ 166 (203)
T 1ukz_A 88 ISD-NVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETS 166 (203)
T ss_dssp HHH-HHHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHTT
T ss_pred HHh-hhccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhh
Confidence 652 12233 689999999999999999987777778999999997532 1 345678999999999999999
Q ss_pred HHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHH
Q psy11031 371 LPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKI 406 (520)
Q Consensus 371 ~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~ 406 (520)
.++.++|...+.++.||++.++++|+++|.+.|...
T Consensus 167 ~~~~~~~~~~~~vi~id~~~~~e~v~~~i~~~l~~~ 202 (203)
T 1ukz_A 167 MPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAIRDS 202 (203)
T ss_dssp HHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHhcc
Confidence 999999987778888999999999999999888653
No 17
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.92 E-value=6.4e-24 Score=205.93 Aligned_cols=173 Identities=21% Similarity=0.373 Sum_probs=149.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhc
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKK 303 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~ 303 (520)
++.+|+|+|+|||||||+|+.|++++ |+.+++++++++ .....+++.|..+++++..|..+|++....++.+++.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l-~~~~i~~d~~~~---~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~- 80 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF-ELKHLSSGDLLR---DNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELK- 80 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS-SSEEEEHHHHHH---HHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHH-
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc-CCeEEechHHHH---HhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHh-
Confidence 46789999999999999999999998 999999999999 6666788899999999999999999999888888887
Q ss_pred cccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-----c------c----------------------
Q psy11031 304 TKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-----K------G---------------------- 350 (520)
Q Consensus 304 ~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-----r------~---------------------- 350 (520)
.. .+.+||+||||++..|++.|... ..++.+|+|+|+.+.+. | +
T Consensus 81 -~~-~~~~~vid~~~~~~~~~~~l~~~-~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~y~~~~~pp~~~~~~~~~~~~ 157 (227)
T 1zd8_A 81 -NL-TQYSWLLDGFPRTLPQAEALDRA-YQIDTVINLNVPFEVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEP 157 (227)
T ss_dssp -TC-TTSCEEEESCCCSHHHHHHHHTT-SCCCEEEEEECCHHHHHHHHTCEEEETTTTEEEETTTBCCSSTTBCTTTCCB
T ss_pred -cc-cCCCEEEeCCCCCHHHHHHHHHh-cCCCEEEEEECCHHHHHHHHHcCcCCCccCCccccccCCCCccccccccccc
Confidence 32 46789999999999999888765 44678999999987531 1 1
Q ss_pred ---CCCCCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031 351 ---QIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK 405 (520)
Q Consensus 351 ---R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~ 405 (520)
|.+++.+.+++|+..|++.+.+++++|+..+.++.|||+ ++++|++.|.+.|..
T Consensus 158 l~~r~~~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~id~~-~~~~v~~~i~~~l~~ 214 (227)
T 1zd8_A 158 LIQREDDKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGT-ETNKIWPYVYAFLQT 214 (227)
T ss_dssp CBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECS-SHHHHHHHHHHHHTT
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHccCCEEEEeCC-CHHHHHHHHHHHHHh
Confidence 345688999999999999999999999877889999999 999999999887754
No 18
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.91 E-value=1.3e-23 Score=197.56 Aligned_cols=178 Identities=26% Similarity=0.522 Sum_probs=153.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhc
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKK 303 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~ 303 (520)
++.+|+|+|+|||||||+|+.|++++ |+.+++++++++ .....+++.|..+++++..|+.++.+.+..++...+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l-~~~~i~~d~~~~---~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~ 83 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY-GYTHLSTGDLLR---SEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVA 83 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH-CCEEEEHHHHHH---HHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh-CCeEEcHHHHHH---HHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHh
Confidence 56799999999999999999999997 999999999999 65667788999999999999999999998888888772
Q ss_pred cccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-----c----cCCCCCHHHHHHHHHHHHHHhHHHH
Q psy11031 304 TKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-----K----GQIDNSVSAFRRRLELFRERTLPML 374 (520)
Q Consensus 304 ~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-----r----~R~dD~~e~~~~Rl~~f~~~~~~l~ 374 (520)
....+.+||+||||++..|++.|...+..++.+|+|+|+.+.+. | .|.+++.+.+.+|+..|.....++.
T Consensus 84 -~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 162 (196)
T 2c95_A 84 -KVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRGETSGRVDDNEETIKKRLETYYKATEPVI 162 (196)
T ss_dssp -HTTTCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHTSSSCGGGSHHHHHHHHHHHHHHTHHHH
T ss_pred -ccccCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccCCcCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 23356899999999999999998887777778999999997632 1 2335678899999999999999999
Q ss_pred HHhhhCCCEEEEECCCCHHHHHHHHHHHHHHH
Q psy11031 375 RAMDVETRLTIVDGDTQLPQVREEFERVLKKI 406 (520)
Q Consensus 375 ~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~ 406 (520)
++|...+.++.||++.+++++++.|.+.|...
T Consensus 163 ~~~~~~~~~~~Id~~~~~e~v~~~i~~~l~~~ 194 (196)
T 2c95_A 163 AFYEKRGIVRKVNAEGSVDSVFSQVCTHLDAL 194 (196)
T ss_dssp HHHHHHTCEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcEEEEECCCCHHHHHHHHHHHHHHh
Confidence 99987777888999999999999998887653
No 19
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.90 E-value=2.3e-23 Score=197.97 Aligned_cols=174 Identities=26% Similarity=0.444 Sum_probs=149.6
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHH
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEM 301 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l 301 (520)
...|.+|+|+|+|||||||+|+.|++++ |+.+++++++++ +....++..|..+++++..|+.+|++.+..++..++
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l-~~~~i~~d~~~r---~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~ 92 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKL-GIPQISTGELFR---RNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRL 92 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHH-TCCEEEHHHHHH---HHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh-CCcEEehhHHHH---HHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHH
Confidence 4557799999999999999999999997 999999999999 666677889999999999999999999999998888
Q ss_pred hccccCCCcEEEEeCCCCCHHHHHHHHhhcC----CCCCEEEecCChhhh-----hccCCCCCHHHHHHHHHHHHHHhHH
Q psy11031 302 KKTKYTEADGIVIDGFPREMSQLIDFENKYQ----IHPPMILIDCSKLVL-----HKGQIDNSVSAFRRRLELFRERTLP 372 (520)
Q Consensus 302 ~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~----~p~~VI~Ld~~~~~~-----~r~R~dD~~e~~~~Rl~~f~~~~~~ 372 (520)
. ...++.+||+||||++..|++.|...+. .++.+|+|+|+.+.+ .|+|.+++.+.+++|++.|.....+
T Consensus 93 ~--~~~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~r~~~~~e~~~~r~~~~~~~~~~ 170 (201)
T 2cdn_A 93 N--NPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRADDTDDVILNRMKVYRDETAP 170 (201)
T ss_dssp T--SGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHHTTT
T ss_pred h--cccCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhHH
Confidence 7 4456778999999999999988765442 356799999999764 2457778899999999999999999
Q ss_pred HHHHhhhCCCEEEEECCCCHHHHHHHHHHHH
Q psy11031 373 MLRAMDVETRLTIVDGDTQLPQVREEFERVL 403 (520)
Q Consensus 373 l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I 403 (520)
+.++| ...++.||++.++++|+++|...|
T Consensus 171 ~~~~~--~~~~~~Id~~~~~eev~~~I~~~l 199 (201)
T 2cdn_A 171 LLEYY--RDQLKTVDAVGTMDEVFARALRAL 199 (201)
T ss_dssp HHHHT--TTTEEEEECCSCHHHHHHHHHHHT
T ss_pred HHHHh--cCcEEEEeCCCCHHHHHHHHHHHH
Confidence 99988 346889999999999999998765
No 20
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.90 E-value=1.1e-22 Score=190.05 Aligned_cols=176 Identities=23% Similarity=0.538 Sum_probs=151.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMK 302 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~ 302 (520)
..+++|+|+|+|||||||+|+.|++++ |+.+++++++++ .....+++.+..+++++..|...++++...++...+.
T Consensus 4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l-~~~~i~~d~~~~---~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~ 79 (194)
T 1qf9_A 4 SKPNVVFVLGGPGSGKGTQCANIVRDF-GWVHLSAGDLLR---QEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAID 79 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHH-CCEEEEHHHHHH---HHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHHh-CCeEeeHHHHHH---HHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence 346799999999999999999999997 999999999999 6665778899999999999999999999999988887
Q ss_pred ccccCCCcEEEEeCCCCCHHHHHHHHhhcC---CCCCEEEecCChhhhh-----c----cCCCCCHHHHHHHHHHHHHHh
Q psy11031 303 KTKYTEADGIVIDGFPREMSQLIDFENKYQ---IHPPMILIDCSKLVLH-----K----GQIDNSVSAFRRRLELFRERT 370 (520)
Q Consensus 303 ~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~---~p~~VI~Ld~~~~~~~-----r----~R~dD~~e~~~~Rl~~f~~~~ 370 (520)
.. .+.+||+||||++..+++.+...+. .++.+|+|+||.+.+. | .|.+++.+.+.+|+..|.+..
T Consensus 80 --~~-~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~ri~~~~~~~ 156 (194)
T 1qf9_A 80 --AN-QGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQT 156 (194)
T ss_dssp --TS-TTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTH
T ss_pred --hc-CCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhH
Confidence 32 5678999999999999988876554 4567999999997532 2 355677899999999999999
Q ss_pred HHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031 371 LPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK 405 (520)
Q Consensus 371 ~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~ 405 (520)
.++.++|...+.++.||++.+++++++.|...+..
T Consensus 157 ~~~~~~~~~~~~~~~id~~~~~~~~~~~i~~~l~~ 191 (194)
T 1qf9_A 157 KLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFKS 191 (194)
T ss_dssp HHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 99999998777788999999999999999887754
No 21
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.90 E-value=6.1e-23 Score=193.36 Aligned_cols=178 Identities=25% Similarity=0.505 Sum_probs=150.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhc
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKK 303 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~ 303 (520)
.+.+|+|+|+|||||||+|+.|++++ |+.+++++++++ .....+++.|..+++++..|..++++.+..++.+.+..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l-~~~~i~~d~~~~---~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~ 86 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKY-GFTHLSTGELLR---EELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVA 86 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHH-TCEEEEHHHHHH---HHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh-CCeEEcHHHHHH---HHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhc
Confidence 36789999999999999999999997 999999999999 66556788899999999999999999999998888772
Q ss_pred cccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhc---cC------CCCCHHHHHHHHHHHHHHhHHHH
Q psy11031 304 TKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHK---GQ------IDNSVSAFRRRLELFRERTLPML 374 (520)
Q Consensus 304 ~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r---~R------~dD~~e~~~~Rl~~f~~~~~~l~ 374 (520)
....+.+||+||||++..|++.|.+.+..++.+|+|+|+.+.+.+ .| .+++.+.+.+|+..|.....++.
T Consensus 87 -~~~~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 165 (199)
T 2bwj_A 87 -SLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSRSSLPVDDTTKTIAKRLEAYYRASIPVI 165 (199)
T ss_dssp -HTTSCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ccccCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 223468899999999999999888776667789999999976421 12 22346788999999999999999
Q ss_pred HHhhhCCCEEEEECCCCHHHHHHHHHHHHHHH
Q psy11031 375 RAMDVETRLTIVDGDTQLPQVREEFERVLKKI 406 (520)
Q Consensus 375 ~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~ 406 (520)
++|...+.++.||++.+++++++.|.+.|...
T Consensus 166 ~~~~~~~~~~~id~~~~~e~v~~~i~~~l~~~ 197 (199)
T 2bwj_A 166 AYYETKTQLHKINAEGTPEDVFLQLCTAIDSI 197 (199)
T ss_dssp HHHHHHSEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCEEEEECCCCHHHHHHHHHHHHHHh
Confidence 99987666788999999999999999888654
No 22
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.90 E-value=2.6e-22 Score=187.84 Aligned_cols=178 Identities=24% Similarity=0.545 Sum_probs=146.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhccc-ccCCcchHHHHhhhhcCCccchHHHHHHHHHHHh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIE-DDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMK 302 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~-~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~ 302 (520)
+|.+|+|+|+|||||||+|+.|++++ |+.|++++++++ ... ..++..+..+++++..|..+++++...++..++.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~-~~~~i~~d~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~ 77 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY-GYTHLSAGELLR---DERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMD 77 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH-CCEEEEHHHHHH---HHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh-CCeEEeHHHHHH---HHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHH
Confidence 36789999999999999999999997 999999999998 433 3567789999999999999999888777766654
Q ss_pred cc--ccCCCcEEEEeCCCCCHHHHHHHHhhcC---CCCCEEEecCChhhhh-----c----cCCCCCHHHHHHHHHHHHH
Q psy11031 303 KT--KYTEADGIVIDGFPREMSQLIDFENKYQ---IHPPMILIDCSKLVLH-----K----GQIDNSVSAFRRRLELFRE 368 (520)
Q Consensus 303 ~~--~~~~~~G~ILDGFPrt~~Qae~l~~~~~---~p~~VI~Ld~~~~~~~-----r----~R~dD~~e~~~~Rl~~f~~ 368 (520)
.. ....+.+||+||||++..+.+.+...+. .++.+|+|+||++.+. | +|.+++.+.+++|+..|.+
T Consensus 78 ~~~~~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~ 157 (196)
T 1tev_A 78 QTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQ 157 (196)
T ss_dssp HHHHHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHH
T ss_pred hhhccccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHH
Confidence 21 1224678999999999998877765443 2456999999997531 2 5677889999999999999
Q ss_pred HhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031 369 RTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK 405 (520)
Q Consensus 369 ~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~ 405 (520)
...+++++|...+.++.||++.++++|++.|.+.|..
T Consensus 158 ~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 194 (196)
T 1tev_A 158 STKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDK 194 (196)
T ss_dssp HHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 9999999998777788999999999999999887754
No 23
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.89 E-value=2e-22 Score=188.22 Aligned_cols=169 Identities=26% Similarity=0.501 Sum_probs=143.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhc
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKK 303 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~ 303 (520)
.+.+|+|+|+|||||||+|+.|++++ |+.+++++++++ .....+++.|..+++++.+|..++++.+.+++...+.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l-~~~~i~~d~~~~---~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~- 77 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL-GFKKLSTGDILR---DHVARGTPLGERVRPIMERGDLVPDDLILELIREELA- 77 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH-TCEEECHHHHHH---HHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCC-
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-CCeEecHHHHHH---HHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhc-
Confidence 35789999999999999999999997 999999999999 6556678889999999999999999988888776655
Q ss_pred cccCCCcEEEEeCCCCCHHHHHHHHhhcC----CCCCEEEecCChhhh-----hc----cCCCCCHHHHHHHHHHHHHHh
Q psy11031 304 TKYTEADGIVIDGFPREMSQLIDFENKYQ----IHPPMILIDCSKLVL-----HK----GQIDNSVSAFRRRLELFRERT 370 (520)
Q Consensus 304 ~~~~~~~G~ILDGFPrt~~Qae~l~~~~~----~p~~VI~Ld~~~~~~-----~r----~R~dD~~e~~~~Rl~~f~~~~ 370 (520)
.+||+||||++..|+..+...+. .++.+|+|+||.+.+ .| +|.+++.+.+++|+..|.+..
T Consensus 78 ------~~~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~r~~~~~~~~ 151 (186)
T 3cm0_A 78 ------ERVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAELEGRSDDNEETVRRRLEVYREKT 151 (186)
T ss_dssp ------SEEEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHH
T ss_pred ------CCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHHH
Confidence 25999999999998877664332 256799999998753 22 366788999999999999999
Q ss_pred HHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHH
Q psy11031 371 LPMLRAMDVETRLTIVDGDTQLPQVREEFERVL 403 (520)
Q Consensus 371 ~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I 403 (520)
.++.++|...+.++.||++.++++|+++|.+.+
T Consensus 152 ~~l~~~~~~~~~~~~id~~~~~~~v~~~i~~~l 184 (186)
T 3cm0_A 152 EPLVGYYEARGVLKRVDGLGTPDEVYARIRAAL 184 (186)
T ss_dssp HHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHh
Confidence 999999987777889999999999999998765
No 24
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.81 E-value=4.8e-19 Score=173.72 Aligned_cols=173 Identities=20% Similarity=0.348 Sum_probs=143.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhc
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKK 303 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~ 303 (520)
+|.+|+|+|++||||||+++.|++++ |+.+++.|++++ .....++..+..+..++..+..+|+..+.+.+...+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l-g~~~~~~G~i~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~- 100 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF-GLQHLSSGHFLR---ENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELE- 100 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH-CCCCEEHHHHHH---HHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh-CCeEecHHHHHH---HHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-
Confidence 57899999999999999999999998 999999999998 4444455678888888888999999998888887776
Q ss_pred cccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-----c------c----------------------
Q psy11031 304 TKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-----K------G---------------------- 350 (520)
Q Consensus 304 ~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-----r------~---------------------- 350 (520)
.. .+.+||+||||++..+++.+... ..++.+|+|+|+.+.+. + +
T Consensus 101 -~~-~~~~~il~g~~~~~~~~~~l~~~-~~~~~vi~L~~~~~~~l~r~~~r~~~~lSgrv~al~~~~P~~lllD~~~~EP 177 (246)
T 2bbw_A 101 -NR-RGQHWLLDGFPRTLGQAEALDKI-CEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEP 177 (246)
T ss_dssp -TC-TTSCEEEESCCCSHHHHHHHHTT-CCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTSCCSSTTBCTTTCCB
T ss_pred -hc-CCCeEEEECCCCCHHHHHHHHhh-cCCCEEEEEECCHHHHHHHHHcCCCcCCCCCccccccCCCcccccccccccc
Confidence 22 45789999999998888877653 34668999999886421 1 1
Q ss_pred ---CCCCCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031 351 ---QIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK 405 (520)
Q Consensus 351 ---R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~ 405 (520)
+.+++.+.+.+++..|.+...+++++|.+.+.++.|||+.+ ++|++.|.+.|.+
T Consensus 178 ~~~ld~~~~~~i~~~l~~~~~~~~~v~~~~~~~~~~~~id~~~~-~~v~~~i~~~l~~ 234 (246)
T 2bbw_A 178 LVQQEDDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTET-NKIWPYVYTLFSN 234 (246)
T ss_dssp CBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHHHHHHHT
T ss_pred cccCCCCcHHHHHHHHHHHHHhHHHHHHHHhhcCcEEEECCCCc-HHHHHHHHHHHHh
Confidence 12357788999999999999999999998888999999998 9999999887764
No 25
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.80 E-value=7.7e-19 Score=172.68 Aligned_cols=134 Identities=14% Similarity=0.303 Sum_probs=112.6
Q ss_pred HHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHh----cCCcCEEEEEEcCHHHHH
Q psy11031 21 LKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDK----IKTINGVILIAWRQSLLE 96 (520)
Q Consensus 21 G~~l~~~i~~G~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~----~~~pd~VI~L~~pd~~l~ 96 (520)
|..++.++.+|. ++||+++..++.+++...++.+|||||||||+..|+..|.+. +..||.||+|+||.+++.
T Consensus 75 g~~i~~~~~~g~----~~~~~~~~~~~~~~l~~~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~ 150 (243)
T 3tlx_A 75 GLKIKNIINEGK----LVDDQMVLSLVDEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLV 150 (243)
T ss_dssp HHHHHHHHHTTC----CCCHHHHHHHHHHHTTSGGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHH
T ss_pred HHHHHHHHhcCC----CCcHHHHHHHHHHHHhcccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHH
Confidence 333444555555 999999999999999876678999999999999999776542 357999999999999999
Q ss_pred HHhh-hCc---------------------------cCCccc--hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCCh
Q psy11031 97 RQID-YGA---------------------------KLGHVI--LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNP 146 (520)
Q Consensus 97 ~Rl~-rg~---------------------------~~~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~ 146 (520)
+|+. |+. ...|.| ++.+++||..|++++.|+++||++.++++.|||++++
T Consensus 151 ~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~ 230 (243)
T 3tlx_A 151 NRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNEPLIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPA 230 (243)
T ss_dssp HHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCH
T ss_pred HHHHcCCCCcccCcccccccCCCcccCccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCH
Confidence 9994 431 112443 7899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy11031 147 VEVYADFRTAVL 158 (520)
Q Consensus 147 eeV~~~i~~~l~ 158 (520)
++|+++|.++|.
T Consensus 231 ~~v~~~i~~~l~ 242 (243)
T 3tlx_A 231 NDLEKKISQHID 242 (243)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 999999998875
No 26
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.75 E-value=1.4e-17 Score=159.50 Aligned_cols=147 Identities=22% Similarity=0.388 Sum_probs=121.8
Q ss_pred ccCcccCcHHHHHHHHHHcc----------CCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHh---
Q psy11031 12 LDFPSHRNPLKMFNLFVSEE----------VKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDK--- 78 (520)
Q Consensus 12 ~~~~~h~s~G~~l~~~i~~G----------~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~--- 78 (520)
++++ |+++|+.++..+..| ...|.++|++++.+++.+++....+..||||||||++..|+..+...
T Consensus 24 ~~~~-~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~ildg~p~~~~~~~~~~~~~~~ 102 (216)
T 3dl0_A 24 YGIP-HISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEE 102 (216)
T ss_dssp SSCC-EEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGGGTTCEEEESCCCSHHHHHHHHHHHHH
T ss_pred hCCc-EEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccccCCEEEeCCCCCHHHHHHHHHHHHH
Confidence 4566 788877777655544 13556999999999999999865678899999999999999776653
Q ss_pred -cCCcCEEEEEEcCHHHHHHHhh-h---------------------------CccCCcc--chHHHHHHHHHHHhccchH
Q psy11031 79 -IKTINGVILIAWRQSLLERQID-Y---------------------------GAKLGHV--ILSLARMELANFYQNVTPV 127 (520)
Q Consensus 79 -~~~pd~VI~L~~pd~~l~~Rl~-r---------------------------g~~~~r~--d~e~i~~Rl~~Y~~~t~pv 127 (520)
+..+|.||+|+||.+++.+|+. | +...+|. +++.+++|+..|++++.++
T Consensus 103 ~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r~~d~~e~i~~rl~~~~~~~~~~ 182 (216)
T 3dl0_A 103 MGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPL 182 (216)
T ss_dssp TTCCCSEEEEEECCGGGHHHHHHTEEEETTTCCEEETTTBCCSSTTBCTTTCCBEECCTTCSHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEEECCHHHHHHHHHCCCcCCccCCccccccCCCcccCccccccccccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3469999999999999999994 4 1112343 3789999999999999999
Q ss_pred HHHhhhCCcEEEEeCCCChHHHHHHHHHHHHH
Q psy11031 128 TDFFDQRGMLIAVNGERNPVEVYADFRTAVLK 159 (520)
Q Consensus 128 i~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l~~ 159 (520)
.+||.+.+.++.|||++++++|+++|.++|+.
T Consensus 183 ~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (216)
T 3dl0_A 183 LDFYDEKGYLVNVNGQQDIQDVYADLKVLLGG 214 (216)
T ss_dssp HHHHHHHTCEEEEECSSCHHHHHHHHHHHHGG
T ss_pred HHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998864
No 27
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.73 E-value=5.9e-17 Score=154.97 Aligned_cols=146 Identities=18% Similarity=0.334 Sum_probs=118.6
Q ss_pred cCcccCcHHHHHHHHHHccC----------CCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHh----
Q psy11031 13 DFPSHRNPLKMFNLFVSEEV----------KDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDK---- 78 (520)
Q Consensus 13 ~~~~h~s~G~~l~~~i~~G~----------~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~---- 78 (520)
+++ |+++++.++..+..|. ..|.++|++++.+++.+++....+..||||||||++..|+..+...
T Consensus 25 ~~~-~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~ildg~p~~~~~~~~l~~~~~~~ 103 (216)
T 3fb4_A 25 EIP-HISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDDCQKGFLLDGFPRTVAQADALDSLLTDL 103 (216)
T ss_dssp CCC-EEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTTCEEEESCCCSHHHHHHHHHHHHHT
T ss_pred CCc-EeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccCCCcEEEeCCCCCHHHHHHHHHHHHhc
Confidence 455 6766666665443331 1344999999999999999865668899999999999999776653
Q ss_pred cCCcCEEEEEEcCHHHHHHHhh-h---------------------------CccCCccc--hHHHHHHHHHHHhccchHH
Q psy11031 79 IKTINGVILIAWRQSLLERQID-Y---------------------------GAKLGHVI--LSLARMELANFYQNVTPVT 128 (520)
Q Consensus 79 ~~~pd~VI~L~~pd~~l~~Rl~-r---------------------------g~~~~r~d--~e~i~~Rl~~Y~~~t~pvi 128 (520)
+..+|.||+|+||.+++.+|+. | +...+|.+ ++.+++|+..|++++.++.
T Consensus 104 ~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r~~d~~e~i~~rl~~~~~~~~~~~ 183 (216)
T 3fb4_A 104 GKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQPLL 183 (216)
T ss_dssp TCCCSEEEEEECCHHHHHHHHHSEEEETTTCCEEETTTBCCSSTTBCTTTCCBEECCGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCHHHHHHHHHcCCCCCccCCccccccCCCCcccccccccCccccCCCCCHHHHHHHHHHHHHhHHHHH
Confidence 3469999999999999999994 4 11123433 7889999999999999999
Q ss_pred HHhhhCCcEEEEeCCCChHHHHHHHHHHHHH
Q psy11031 129 DFFDQRGMLIAVNGERNPVEVYADFRTAVLK 159 (520)
Q Consensus 129 ~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l~~ 159 (520)
+||.+.+.++.||+++++++|+++|.++|..
T Consensus 184 ~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (216)
T 3fb4_A 184 DFYSQKGVLKDIDGQQDIKKVFVDINDLLGG 214 (216)
T ss_dssp HHHHHTTCEEEEECSSCHHHHHHHHHHHHHT
T ss_pred HHHHcCCcEEEEECCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998864
No 28
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.73 E-value=5.6e-17 Score=156.15 Aligned_cols=141 Identities=16% Similarity=0.313 Sum_probs=114.3
Q ss_pred ccCcccCcHHHHHH--------------HHHHccCCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHH
Q psy11031 12 LDFPSHRNPLKMFN--------------LFVSEEVKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSD 77 (520)
Q Consensus 12 ~~~~~h~s~G~~l~--------------~~i~~G~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~ 77 (520)
++++ |+++++.++ +++.+|. ++|++++.+++..+|....+..|||+|||||+..|+..+..
T Consensus 29 l~~~-~i~~d~li~~~~~~~t~~g~~i~~~~~~g~----~~~~~~~~~~i~~~l~~~~~~~~~i~dg~~~~~~~~~~l~~ 103 (217)
T 3be4_A 29 YGLA-HLSTGDMLREAIKNGTKIGLEAKSIIESGN----FVGDEIVLGLVKEKFDLGVCVNGFVLDGFPRTIPQAEGLAK 103 (217)
T ss_dssp HCCE-EEEHHHHHHHHHHTC--CCHHHHHHHHHTC----CCCHHHHHHHHHHHHHTTTTTTCEEEESCCCSHHHHHHHHH
T ss_pred hCce-EEehhHHHHHHHHcCCHHHHHHHHHHHCCC----cCCHHHHHHHHHHHHhccccCCCEEEeCCCCCHHHHHHHHH
Confidence 4555 777665554 4455555 99999999999999976567889999999999999966552
Q ss_pred ----hcCCcCEEEEEEcCHHHHHHHhh-hCc---------------------------cCCccc--hHHHHHHHHHHHhc
Q psy11031 78 ----KIKTINGVILIAWRQSLLERQID-YGA---------------------------KLGHVI--LSLARMELANFYQN 123 (520)
Q Consensus 78 ----~~~~pd~VI~L~~pd~~l~~Rl~-rg~---------------------------~~~r~d--~e~i~~Rl~~Y~~~ 123 (520)
.+..||.||+|+||.+++.+|+. |+. ...|.+ .+.+++|+..|+++
T Consensus 104 ~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~~~dd~~e~v~~r~~~~~~~ 183 (217)
T 3be4_A 104 ILSEIGDSLTSVIYFEIDDSEIIERISGRCTHPASGRIYHVKYNPPKQPGIDDVTGEPLVWRDDDNAEAVKVRLDVFHKQ 183 (217)
T ss_dssp HHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCccccCccccccCCCCccccccccccccccCCCCCHHHHHHHHHHHHHH
Confidence 34689999999999999999994 321 112332 67889999999999
Q ss_pred cchHHHHhhhCCcEEEEeCCCChHHHHHHHHHHH
Q psy11031 124 VTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAV 157 (520)
Q Consensus 124 t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l 157 (520)
+.|+++||++.+.++.|||++++++|+++|.+.|
T Consensus 184 ~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 217 (217)
T 3be4_A 184 TAPLVKFYEDLGILKRVNAKLPPKEVTEQIKKIL 217 (217)
T ss_dssp TTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCEEEEECCCCHHHHHHHHHhhC
Confidence 9999999998888999999999999999998753
No 29
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.69 E-value=3.4e-16 Score=152.25 Aligned_cols=136 Identities=22% Similarity=0.397 Sum_probs=110.6
Q ss_pred HHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHH----hcCCcCEEEEEEcCHHHHH
Q psy11031 21 LKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSD----KIKTINGVILIAWRQSLLE 96 (520)
Q Consensus 21 G~~l~~~i~~G~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~----~~~~pd~VI~L~~pd~~l~ 96 (520)
|..++.++.+|. ++||+++.+++..++....+..|||+|||||+..|+..|.+ .+..+++||+|+||.+++.
T Consensus 62 g~~i~~~~~~g~----~~~~~~~~~~i~~~l~~~~~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~ 137 (233)
T 1ak2_A 62 GKKLKATMDAGK----LVSDEMVLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLI 137 (233)
T ss_dssp HHHHHHHHHTTC----CCCHHHHHHHHHHHHTSGGGTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHH
T ss_pred HHHHHHHHHCCC----cCCHHHHHHHHHHHHhcccccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHH
Confidence 333444555555 99999999999999976556789999999999999965533 2347999999999999999
Q ss_pred HHhh-hCc---------------------------cCCccc--hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCCh
Q psy11031 97 RQID-YGA---------------------------KLGHVI--LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNP 146 (520)
Q Consensus 97 ~Rl~-rg~---------------------------~~~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~ 146 (520)
+|+. |+. ...|.+ .+.+++|+..|++++.|++++|.+.+.++.|||++++
T Consensus 138 ~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r~d~~~~~~~~r~~~y~~~~~~~~~~y~~~~~~~~id~~~~~ 217 (233)
T 1ak2_A 138 RRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTP 217 (233)
T ss_dssp HHHHTCEECTTTCCEEBTTTBCCSSTTBCTTTCCBCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCH
T ss_pred HHHHcCCcCCccCCccccccCCCccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCH
Confidence 9984 321 012332 6788999999999999999999988889999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy11031 147 VEVYADFRTAVLKI 160 (520)
Q Consensus 147 eeV~~~i~~~l~~~ 160 (520)
++|+++|.+.|...
T Consensus 218 ~~v~~~I~~~l~~~ 231 (233)
T 1ak2_A 218 DVVFASILAAFSKA 231 (233)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998764
No 30
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.69 E-value=7.2e-16 Score=140.63 Aligned_cols=165 Identities=19% Similarity=0.276 Sum_probs=115.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhccccc----CCcchHHHHhhhhcCCccchHHHHHHHHHHH
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDD----GEGLNSRIKSSVSAGDFVNRDVVLDIVYAEM 301 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~----~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l 301 (520)
++|+|+|+|||||||+|+.| +++ |+.+++++++++ +.... ....+..+..+... .+++.+.+++...+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~-g~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l 73 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER-GAKVIVMSDVVR---KRYSIEAKPGERLMDFAKRLREI---YGDGVVARLCVEEL 73 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT-TCEEEEHHHHHH---HHHHHHC---CCHHHHHHHHHHH---HCTTHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC-CCcEEEHhHHHH---HHHHhcCCChhHHHHHHHHHHhh---CCHHHHHHHHHHHH
Confidence 57999999999999999999 887 999999999999 43221 12233344443332 23355666666666
Q ss_pred hccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-----ccCCC--CCHHHHHHHHHHHHHHhHHHH
Q psy11031 302 KKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-----KGQID--NSVSAFRRRLELFRERTLPML 374 (520)
Q Consensus 302 ~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-----r~R~d--D~~e~~~~Rl~~f~~~~~~l~ 374 (520)
. . ..+.+||+||| ++..+++.|.+.+..+..+|+|+||.+.+. |+|.+ .+.+.+.+|+..... .+..
T Consensus 74 ~--~-~~~~~vi~dg~-~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~~--~~~~ 147 (179)
T 3lw7_A 74 G--T-SNHDLVVFDGV-RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRDREELK--LGIG 147 (179)
T ss_dssp C--S-CCCSCEEEECC-CCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHHHHHHHH--HTHH
T ss_pred H--h-cCCCeEEEeCC-CCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHHHHhhhc--cChH
Confidence 4 2 35788999999 999999999998877778999999998642 33332 466777777643222 2233
Q ss_pred HHhhhCCCEEEEECCCCHHHHHHHHHHHHHHH
Q psy11031 375 RAMDVETRLTIVDGDTQLPQVREEFERVLKKI 406 (520)
Q Consensus 375 ~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~ 406 (520)
.++...+ ++||++.+++++.++|...+...
T Consensus 148 ~~~~~ad--~vId~~~~~~~~~~~i~~~l~~~ 177 (179)
T 3lw7_A 148 EVIAMAD--YIITNDSNYEEFKRRCEEVTDRV 177 (179)
T ss_dssp HHHHTCS--EEEECCSCHHHHHHHHHHHHHHH
T ss_pred hHHHhCC--EEEECCCCHHHHHHHHHHHHHHH
Confidence 3443333 46888889999999999888764
No 31
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.68 E-value=2.9e-16 Score=150.56 Aligned_cols=145 Identities=15% Similarity=0.238 Sum_probs=118.6
Q ss_pred ccCcccCcHHHHHHHHHHccCC----------CCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHhcCC
Q psy11031 12 LDFPSHRNPLKMFNLFVSEEVK----------DFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKT 81 (520)
Q Consensus 12 ~~~~~h~s~G~~l~~~i~~G~~----------~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~~~~ 81 (520)
++++ |+++|+.+++.+..|.. +|.++|++++.+++..+|....+..|||+|||||+..|+..|...+..
T Consensus 24 ~g~~-~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~~~i~dg~~~~~~~~~~l~~~~~~ 102 (214)
T 1e4v_A 24 YGIP-QISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGIN 102 (214)
T ss_dssp HCCC-EEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGCEEEESCCCSHHHHHHHHHTTCC
T ss_pred hCCe-EEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCCCEEEeCCCCCHHHHHHHHhcCCC
Confidence 4566 88888888775544321 245999999999999999764456799999999999999777766678
Q ss_pred cCEEEEEEcCHHHHHHHhh-hCc---------------------------cCCccc--hHHHHHHHHHHHhccchHHHHh
Q psy11031 82 INGVILIAWRQSLLERQID-YGA---------------------------KLGHVI--LSLARMELANFYQNVTPVTDFF 131 (520)
Q Consensus 82 pd~VI~L~~pd~~l~~Rl~-rg~---------------------------~~~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y 131 (520)
||.||+|+||.+++.+|+. |+. ...|.+ .+.+++|+..|++++.|+++||
T Consensus 103 ~d~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~~~~rl~~y~~~~~~l~~~~ 182 (214)
T 1e4v_A 103 VDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYY 182 (214)
T ss_dssp CSEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCTTCSHHHHHHHHHHHHHHTTHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHCCcccCCcCCcccccCCCCCccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999983 321 012443 6789999999999999999999
Q ss_pred hhC-----CcEEEEeCCCChHHHHHHHHHHH
Q psy11031 132 DQR-----GMLIAVNGERNPVEVYADFRTAV 157 (520)
Q Consensus 132 ~~~-----~~l~~Ida~~~~eeV~~~i~~~l 157 (520)
.+. +.++.|||++++++|+++|.+.|
T Consensus 183 ~~~~~~~~~~~~~ida~~~~~~v~~~i~~~l 213 (214)
T 1e4v_A 183 SKEAEAGNTKYAKVDGTKPVAEVRADLEKIL 213 (214)
T ss_dssp HHHHHHTSCEEEEEETTSCHHHHHHHHHHHH
T ss_pred HhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 875 57999999999999999998876
No 32
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.66 E-value=1.2e-15 Score=147.54 Aligned_cols=133 Identities=14% Similarity=0.192 Sum_probs=108.5
Q ss_pred HHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHH----hcCCcCEEEEEEcCHHHH
Q psy11031 20 PLKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSD----KIKTINGVILIAWRQSLL 95 (520)
Q Consensus 20 ~G~~l~~~i~~G~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~----~~~~pd~VI~L~~pd~~l 95 (520)
.|..+++++.+|. ++|++++.+++..+|.... ..+||+|||||+..|+..+.+ .+..||.||+|+||.+++
T Consensus 45 ~g~~i~~~~~~g~----~~~~~~~~~~i~~~l~~~~-g~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~ 119 (223)
T 2xb4_A 45 LGKKAKEFIDRGD----LVPDDITIPMVLETLESKG-KDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVA 119 (223)
T ss_dssp HHHHHHHHHTTTC----CCCHHHHHHHHHHHHHHHC-TTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHH
T ss_pred HHHHHHHHHHcCC----cCcHHHHHHHHHHHHhccc-CCeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHH
Confidence 4555555565555 9999999999999987533 679999999999999966643 245899999999999999
Q ss_pred HHHh-hhCc--c-C--------------------------Cccc--hH-HHHHHHHHHHhccchHHH---Hhhh-----C
Q psy11031 96 ERQI-DYGA--K-L--------------------------GHVI--LS-LARMELANFYQNVTPVTD---FFDQ-----R 134 (520)
Q Consensus 96 ~~Rl-~rg~--~-~--------------------------~r~d--~e-~i~~Rl~~Y~~~t~pvi~---~Y~~-----~ 134 (520)
.+|+ .|+. . + .|.| .+ .+++||..|++++.||++ +|.+ .
T Consensus 120 ~~Rl~~R~~~~~~~g~~y~~~~~~p~~~~~~~~~~~~~l~~r~dd~~e~~i~~rl~~~~~~~~p~~~~~~~y~~~a~~~~ 199 (223)
T 2xb4_A 120 KNRIMGRRICKNNPNHPNNIFIDAIKPNGDVCRVCGGALSARADDQDEGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEG 199 (223)
T ss_dssp HHHHHTBCEESSCTTSCCBTTCGGGCCBTTBCTTTCCBEECCGGGGCHHHHHHHHHHHTCTTTSHHHHHHHHHTTHHHHT
T ss_pred HHHHHcccCCccccCCccccccCCCccccccccccccccccCCCCCHHHHHHHHHHHHHHhHHHHHhhHHHHhhhhhccC
Confidence 9999 4431 1 1 1222 56 899999999999999999 9987 6
Q ss_pred CcEEEEeCCCChHHHHHHHHHHH
Q psy11031 135 GMLIAVNGERNPVEVYADFRTAV 157 (520)
Q Consensus 135 ~~l~~Ida~~~~eeV~~~i~~~l 157 (520)
+.++.|||++++++|+++|.+.|
T Consensus 200 ~~~~~ida~~~~~~v~~~i~~~l 222 (223)
T 2xb4_A 200 FVYIELDGEGSIDSIKDTLLAQL 222 (223)
T ss_dssp CEEEEEETTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCHHHHHHHHHHHh
Confidence 78999999999999999998876
No 33
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.66 E-value=1.2e-15 Score=146.74 Aligned_cols=135 Identities=16% Similarity=0.279 Sum_probs=109.5
Q ss_pred HHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHh-cCCCCCcEEEeCCCCCHHhHHHHHH----hcCCcCEEEEEEcCHHH
Q psy11031 20 PLKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMK-MSPAAKAFLISGYPRNMRDVVEYSD----KIKTINGVILIAWRQSL 94 (520)
Q Consensus 20 ~G~~l~~~i~~G~~~g~lVPdelv~~ll~~~l~-~~~~~~G~ILDGFPRt~~QA~~~~~----~~~~pd~VI~L~~pd~~ 94 (520)
.|..+++++.+|. ++|++++..++.+++. ...+..|||+|||||+..|+..+.. .+..||.||+|+||.++
T Consensus 49 ~g~~i~~~~~~g~----~~~~~~~~~~l~~~l~~~~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~ 124 (220)
T 1aky_A 49 LGLEAKKIMDQGG----LVSDDIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDEL 124 (220)
T ss_dssp HHHHHHHHHHTTC----CCCHHHHHHHHHHHHHHCGGGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHH
T ss_pred HHHHHHHHHHCCC----cCCHHHHHHHHHHHHHhccccCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHH
Confidence 3444555566666 9999999999999987 3335679999999999999865432 34689999999999999
Q ss_pred HHHHhh-hCc---------------------------cCCccc--hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCC
Q psy11031 95 LERQID-YGA---------------------------KLGHVI--LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGER 144 (520)
Q Consensus 95 l~~Rl~-rg~---------------------------~~~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~ 144 (520)
+.+|+. |+. ...|.+ .+.+++|+..|++.+.|++++|++.+.++.|||++
T Consensus 125 ~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~d~~~~~~l~~r~dd~~~~~~~rl~~~~~~~~~l~~~y~~~~~~~~id~~~ 204 (220)
T 1aky_A 125 LVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQ 204 (220)
T ss_dssp HHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCBCBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTS
T ss_pred HHHHHhCCCccCccCCccccccCCCcccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 999984 321 012433 67889999999999999999998878899999999
Q ss_pred ChHHHHHHHHHHHH
Q psy11031 145 NPVEVYADFRTAVL 158 (520)
Q Consensus 145 ~~eeV~~~i~~~l~ 158 (520)
++++|+++|.+.|.
T Consensus 205 ~~~~v~~~i~~~l~ 218 (220)
T 1aky_A 205 PPATVWADILNKLG 218 (220)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998874
No 34
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.64 E-value=6e-15 Score=139.18 Aligned_cols=170 Identities=11% Similarity=0.217 Sum_probs=110.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHH--HH-
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVY--AE- 300 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~--~~- 300 (520)
++.+|+|+|+|||||||+|+.|++++.|+.++++.. ...++..|+.+++++..+..+..... .++. .+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~--------~~~~~~~g~~i~~~~~~~~~~~~~~~-~~l~~~~r~ 73 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF--------PQRSTVTGKMIDDYLTRKKTYNDHIV-NLLFCANRW 73 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES--------SCTTSHHHHHHHHHHTSSCCCCHHHH-HHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec--------CCCCCcHHHHHHHHHhcCCCCCHHHH-HHHHHHHHH
Confidence 467899999999999999999999863577777522 22245678889988876654443322 2221 11
Q ss_pred -----HhccccCCCcEEEEeCCCCC-----------HHHHHHHHhhcCCCCCEEEecCChhhhhccCCCCCHH--HHHHH
Q psy11031 301 -----MKKTKYTEADGIVIDGFPRE-----------MSQLIDFENKYQIHPPMILIDCSKLVLHKGQIDNSVS--AFRRR 362 (520)
Q Consensus 301 -----l~~~~~~~~~G~ILDGFPrt-----------~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r~R~dD~~e--~~~~R 362 (520)
+.. ....+..+|+|+||.+ .++...+......++.+|+|+||++.+.++|.+|..+ .+.+|
T Consensus 74 ~~~~~i~~-~l~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~~R~~d~~e~~~~~~r 152 (204)
T 2v54_A 74 EFASFIQE-QLEQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSKEINRNVGEEIYEDVTFQQK 152 (204)
T ss_dssp TTHHHHHH-HHHTTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCCHHHHTTCCSSSTTCCSHHHHH
T ss_pred HHHHHHHH-HHHCCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCCHHHHHhhcCcccccHHHHHHH
Confidence 110 1123567999999865 2333444433345778999999998654455444333 45555
Q ss_pred HHH-HHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHHH
Q psy11031 363 LEL-FRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDD 409 (520)
Q Consensus 363 l~~-f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~~ 409 (520)
+.. |.+.. +.| ...+++||++.++++|++.|.+.|...+..
T Consensus 153 l~~~y~~~~----~~~--~~~~~~Id~~~~~~~v~~~i~~~l~~~l~~ 194 (204)
T 2v54_A 153 VLQEYKKMI----EEG--DIHWQIISSEFEEDVKKELIKNIVIEAIHT 194 (204)
T ss_dssp HHHHHHHHH----TTC--SSCEEEECTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HhC--CCcEEEEECCCCHHHHHHHHHHHHHHHHhh
Confidence 544 33221 122 245789999999999999999998876653
No 35
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.57 E-value=2.8e-14 Score=139.13 Aligned_cols=172 Identities=16% Similarity=0.174 Sum_probs=109.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHH-HHHHHHHH
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVV-LDIVYAEM 301 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv-~~ll~~~l 301 (520)
..+.+|+|+|+|||||||||++|++.+ +. ++ +++. ...+.+++.|+.+++++.+|....+... .-....+.
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l-~~-~~---~~~~---~~~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~ 95 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRL-VK-DY---DVIM---TREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRR 95 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH-TT-TS---CEEE---ECTTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH-hc-CC---Ccee---ecCCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999999987 53 22 2223 3345678899999999998875333322 22222333
Q ss_pred hcc------ccCCCcEEEEe----------CCCCCHHHHH--H---HHhhcCCCCCEEEecCChhhhh-----ccCC---
Q psy11031 302 KKT------KYTEADGIVID----------GFPREMSQLI--D---FENKYQIHPPMILIDCSKLVLH-----KGQI--- 352 (520)
Q Consensus 302 ~~~------~~~~~~G~ILD----------GFPrt~~Qae--~---l~~~~~~p~~VI~Ld~~~~~~~-----r~R~--- 352 (520)
... ....++.+|+| ||||++.++. . +......|+.+|+|+|+++.+. |++.
T Consensus 96 ~~~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~dr 175 (229)
T 4eaq_A 96 EHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNR 175 (229)
T ss_dssp HHCCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC-----C
T ss_pred HHHHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCccc
Confidence 200 01245689999 9998876543 3 3333456788999999997642 2222
Q ss_pred -CCCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHH
Q psy11031 353 -DNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKII 407 (520)
Q Consensus 353 -dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i 407 (520)
++....+.+|+..++.. +.+.| .+.+++||+++++++|+++|.+.|...+
T Consensus 176 ~e~~~~~~~~rv~~~y~~---l~~~~--~~~~~vIDa~~s~eev~~~I~~~l~~~l 226 (229)
T 4eaq_A 176 LDQEDLKFHEKVIEGYQE---IIHNE--SQRFKSVNADQPLENVVEDTYQTIIKYL 226 (229)
T ss_dssp CCHHHHHHHHHHHHHHHH---HTTTC--TTTEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHH---HHHhC--CCCEEEEeCCCCHHHHHHHHHHHHHHHh
Confidence 22233455555443322 22233 2468899999999999999999888765
No 36
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.56 E-value=2.6e-14 Score=137.55 Aligned_cols=137 Identities=18% Similarity=0.308 Sum_probs=109.9
Q ss_pred HHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhcCCC-CCcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHh
Q psy11031 21 LKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMKMSPA-AKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQI 99 (520)
Q Consensus 21 G~~l~~~i~~G~~~g~lVPdelv~~ll~~~l~~~~~-~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl 99 (520)
|..+++++.+|. ++|++++..++.+++....+ ..|||||||||+.+|+..+...+..|++||+|++|.+++.+|+
T Consensus 51 g~~i~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~vidg~~~~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~ 126 (222)
T 1zak_A 51 GKRAKEFMEKGQ----LVPDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERV 126 (222)
T ss_dssp HHHHHHHHHTTC----CCCHHHHHHHHHHHHHSHHHHHTCEEEESCCCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHH
T ss_pred hHHHHHHHHcCC----cCCHHHHHHHHHHHHhhccccCCcEEEECCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHH
Confidence 344444555555 99999999999888864322 5799999999999999777666668999999999999999998
Q ss_pred h-hCc-----------------------cCCcc--chHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHH
Q psy11031 100 D-YGA-----------------------KLGHV--ILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADF 153 (520)
Q Consensus 100 ~-rg~-----------------------~~~r~--d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i 153 (520)
. |+. ...|. ..+.+++|+..|++++.++.++|... ++.||+++++++|+++|
T Consensus 127 ~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~r~~d~~~~i~~Rl~~~~~~~~~l~~~y~~~--~~~Id~~~~~~ev~~~I 204 (222)
T 1zak_A 127 VGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDDTEEKVKLRLETYYQNIESLLSTYENI--IVKVQGDATVDAVFAKI 204 (222)
T ss_dssp TTEEECTTTCCEEESSSSCCCSSGGGGGCBCCTTCCTTHHHHHHHHHHHHHHHHHHTTCCC--EEEEECSSCHHHHHHHH
T ss_pred HcCCcccccCCccccccCCCcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc--EEEEECCCCHHHHHHHH
Confidence 4 321 11122 26789999999999999999999764 88999999999999999
Q ss_pred HHHHHHHhcc
Q psy11031 154 RTAVLKILNK 163 (520)
Q Consensus 154 ~~~l~~~~~~ 163 (520)
.+.+...+.+
T Consensus 205 ~~~l~~~l~~ 214 (222)
T 1zak_A 205 DELLGSILEK 214 (222)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhhccc
Confidence 9999877643
No 37
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.55 E-value=1.1e-13 Score=130.93 Aligned_cols=134 Identities=16% Similarity=0.389 Sum_probs=109.0
Q ss_pred HHHHHHHccCCCCCCCCHHHHHHHHHHHHhcC--CCCCcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHh-
Q psy11031 23 MFNLFVSEEVKDFSFLSSKTVTEVLMLEMKMS--PAAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQI- 99 (520)
Q Consensus 23 ~l~~~i~~G~~~g~lVPdelv~~ll~~~l~~~--~~~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl- 99 (520)
.++.++.+|. ++|++++..++.+.+... .+..+||+|||||+.+++..|......++.+|+|+||.+++.+|+
T Consensus 64 ~i~~~~~~g~----~~~~~~~~~~l~~~i~~~l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~ 139 (203)
T 1ukz_A 64 LIKNCIKEGQ----IVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLL 139 (203)
T ss_dssp HHHHHHHTTC----CCCHHHHHHHHHHHHHHHHHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHH
T ss_pred HHHHHHHcCC----cCCHHHHHHHHHHHHHhhhccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHH
Confidence 3344444444 999999999888877532 233689999999999999777666667999999999999999998
Q ss_pred hhCccCCcc--chHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHHHHHH
Q psy11031 100 DYGAKLGHV--ILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLKI 160 (520)
Q Consensus 100 ~rg~~~~r~--d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l~~~ 160 (520)
.|+...+|. +.+.+.+|+..|.+...|+.++|+..+.++.||+++++++|+++|.+.+...
T Consensus 140 ~R~~~~~~~~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~vi~id~~~~~e~v~~~i~~~l~~~ 202 (203)
T 1ukz_A 140 ERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAIRDS 202 (203)
T ss_dssp HHHHHHCCTTCSHHHHHHHHHHHHHTTHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHHHH
T ss_pred hccccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHhcc
Confidence 454333454 3778899999999999999999988888899999999999999999998754
No 38
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.55 E-value=8.9e-14 Score=134.34 Aligned_cols=146 Identities=13% Similarity=0.293 Sum_probs=113.2
Q ss_pred ccCcccCcHHHHHHHHHHcc----------CCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHhcCC
Q psy11031 12 LDFPSHRNPLKMFNLFVSEE----------VKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKT 81 (520)
Q Consensus 12 ~~~~~h~s~G~~l~~~i~~G----------~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~~~~ 81 (520)
++++ |+++|+.++..+..| ..+|..+|++++..++.+++... ...+||+||||++..|+..+ .....
T Consensus 31 l~~~-~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~-~~~~~vid~~~~~~~~~~~l-~~~~~ 107 (227)
T 1zd8_A 31 FELK-HLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNL-TQYSWLLDGFPRTLPQAEAL-DRAYQ 107 (227)
T ss_dssp SSSE-EEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTC-TTSCEEEESCCCSHHHHHHH-HTTSC
T ss_pred cCCe-EEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcc-cCCCEEEeCCCCCHHHHHHH-HHhcC
Confidence 3455 666655555433221 11344999999999998888753 56789999999999998544 44467
Q ss_pred cCEEEEEEcCHHHHHHHhh-h------Ccc---------------------CCcc--chHHHHHHHHHHHhccchHHHHh
Q psy11031 82 INGVILIAWRQSLLERQID-Y------GAK---------------------LGHV--ILSLARMELANFYQNVTPVTDFF 131 (520)
Q Consensus 82 pd~VI~L~~pd~~l~~Rl~-r------g~~---------------------~~r~--d~e~i~~Rl~~Y~~~t~pvi~~Y 131 (520)
++.||+|+||.+++.+|+. | |.. ..|. ..+.+++|+..|++.+.|+++||
T Consensus 108 ~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~y~~~~~pp~~~~~~~~~~~~l~~r~~~~~e~~~~r~~~y~~~~~~l~~~y 187 (227)
T 1zd8_A 108 IDTVINLNVPFEVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQREDDKPETVIKRLKAYEDQTKPVLEYY 187 (227)
T ss_dssp CCEEEEEECCHHHHHHHHTCEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHcCcCCCccCCccccccCCCCcccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999983 3 210 0133 26789999999999999999999
Q ss_pred hhCCcEEEEeCCCChHHHHHHHHHHHHHHh
Q psy11031 132 DQRGMLIAVNGERNPVEVYADFRTAVLKIL 161 (520)
Q Consensus 132 ~~~~~l~~Ida~~~~eeV~~~i~~~l~~~~ 161 (520)
++.+.++.|||+ ++++|+++|.+++...+
T Consensus 188 ~~~~~~~~id~~-~~~~v~~~i~~~l~~~~ 216 (227)
T 1zd8_A 188 QKKGVLETFSGT-ETNKIWPYVYAFLQTKV 216 (227)
T ss_dssp HHHTCEEEEECS-SHHHHHHHHHHHHTTTS
T ss_pred HccCCEEEEeCC-CHHHHHHHHHHHHHhhc
Confidence 988889999999 99999999999997655
No 39
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=99.55 E-value=2.4e-14 Score=139.69 Aligned_cols=171 Identities=18% Similarity=0.161 Sum_probs=107.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehh---hHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHH
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLG---KLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYA 299 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~g---dLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~ 299 (520)
.++.+|+|.|++||||||||++|++++ +..|+|.| .++| + ..++++|+.+++++.+|...|.....-+..+
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l-~~~~~~~g~~v~~~r----e-p~~t~~g~~ir~~l~~~~~~~~~~~llf~a~ 96 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRL-QERLGPAGRHVVVTR----E-PGGTRLGETLREILLNQPMDLETEALLMFAG 96 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHH-HHHHGGGTCCEEEEE----S-SSSSHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH-Hhhccccceeeeeec----C-CCCChHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 357899999999999999999999986 55544433 2334 2 3688999999999998876666543333333
Q ss_pred HHhc------cccCCCcEEEEeCCCC------------CHHHHHHHHhh---cCCCCCEEEecCChhhhh-c--cCC-CC
Q psy11031 300 EMKK------TKYTEADGIVIDGFPR------------EMSQLIDFENK---YQIHPPMILIDCSKLVLH-K--GQI-DN 354 (520)
Q Consensus 300 ~l~~------~~~~~~~G~ILDGFPr------------t~~Qae~l~~~---~~~p~~VI~Ld~~~~~~~-r--~R~-dD 354 (520)
|... .....++.+|+|+|.. +.++...++.. +..|+.+|+||++++... | .|. .|
T Consensus 97 R~~~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~~~d 176 (227)
T 3v9p_A 97 RREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRMPD 176 (227)
T ss_dssp HHHHHHHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCCCC-
T ss_pred HHHHHHHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccCcc
Confidence 3220 0112456789998842 34566666654 356888999999997642 2 232 11
Q ss_pred ---C-HHHHHHHH-HHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031 355 ---S-VSAFRRRL-ELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK 405 (520)
Q Consensus 355 ---~-~e~~~~Rl-~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~ 405 (520)
. ...+.+|+ +.|. .+.+.| .+.+++|||++++++|++.|.+.|..
T Consensus 177 r~E~~~~ef~~rv~~~Y~----~la~~~--~~~~~vIDa~~s~eeV~~~I~~~l~~ 226 (227)
T 3v9p_A 177 KFESESDAFFARTRAEYL----RRAQEA--PHRFVIVDSSEPIAQIRKQLEGVLAA 226 (227)
T ss_dssp --CCHHHHHHHHHHHHHH----HHHHHC--TTTEEEEETTSCHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHHH----HHHHHh--cCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence 1 12232332 2222 222333 24689999999999999999988764
No 40
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.53 E-value=3.3e-13 Score=126.17 Aligned_cols=138 Identities=22% Similarity=0.389 Sum_probs=113.0
Q ss_pred HHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhcC-CCCCcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHH
Q psy11031 20 PLKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMKMS-PAAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQ 98 (520)
Q Consensus 20 ~G~~l~~~i~~G~~~g~lVPdelv~~ll~~~l~~~-~~~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~R 98 (520)
.|..+++++.+|. .++++++..++.+.+... ....+||+||||++..|+..|......++.+|+|+||.+++.+|
T Consensus 54 ~~~~i~~~~~~g~----~~~~~~~~~~~~~~i~~~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R 129 (196)
T 2c95_A 54 RGKKLSEIMEKGQ----LVPLETVLDMLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQR 129 (196)
T ss_dssp HHHHHHHHHHTTC----CCCHHHHHHHHHHHHHHHTTTCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHH
T ss_pred HHHHHHHHHHcCC----cCCHHHHHHHHHHHHHhccccCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHH
Confidence 3444444555555 999999999988887642 24679999999999999977766667899999999999999999
Q ss_pred h-hhCccCCccc--hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHHHHHHh
Q psy11031 99 I-DYGAKLGHVI--LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLKIL 161 (520)
Q Consensus 99 l-~rg~~~~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l~~~~ 161 (520)
+ .|+....|.+ .+.+.+|+..|.+...|++++|+..+.++.||+++++++++++|.+.+...+
T Consensus 130 ~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~e~v~~~i~~~l~~~~ 195 (196)
T 2c95_A 130 LLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDSVFSQVCTHLDALL 195 (196)
T ss_dssp HHHHHTSSSCGGGSHHHHHHHHHHHHHHTHHHHHHHHHHTCEEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred HHccCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHHHhc
Confidence 9 4543335543 6788999999999999999999887778899999999999999999987654
No 41
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=99.53 E-value=6.9e-14 Score=134.26 Aligned_cols=168 Identities=17% Similarity=0.201 Sum_probs=106.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCC-CCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHH---------
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYP-NWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVL--------- 294 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~-g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~--------- 294 (520)
.++|+|.|+.||||||||++|++++. |+..+. ...+.+++.|+.+++++.++..++.....
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~---------~~eP~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~ 72 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIM---------TREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRRE 72 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE---------EESSTTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHCCCCEEE---------eeCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHH
Confidence 36899999999999999999998751 222222 22356889999999999888766654322
Q ss_pred ---HHHHHHHhccccCCCcEEEEeCCC----------C--CHHHHHHHHhh---cCCCCCEEEecCChhhhh-----ccC
Q psy11031 295 ---DIVYAEMKKTKYTEADGIVIDGFP----------R--EMSQLIDFENK---YQIHPPMILIDCSKLVLH-----KGQ 351 (520)
Q Consensus 295 ---~ll~~~l~~~~~~~~~G~ILDGFP----------r--t~~Qae~l~~~---~~~p~~VI~Ld~~~~~~~-----r~R 351 (520)
+.+...+. .++.+|+|+|. + ..++...+... ...|+.+|+||++++... |++
T Consensus 73 ~~~~~i~p~l~-----~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~ 147 (205)
T 4hlc_A 73 HLVLKVIPALK-----EGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSR 147 (205)
T ss_dssp HHHHTHHHHHH-----TTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC---
T ss_pred HHHHHHHHHHH-----cCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCC
Confidence 22222233 45678889874 2 34555555543 346788999999998642 222
Q ss_pred CCCCHHHHHHHHHHHHHHhHHH-HHHhhh-CCCEEEEECCCCHHHHHHHHHHHHHHHHHH
Q psy11031 352 IDNSVSAFRRRLELFRERTLPM-LRAMDV-ETRLTIVDGDTQLPQVREEFERVLKKIIDD 409 (520)
Q Consensus 352 ~dD~~e~~~~Rl~~f~~~~~~l-~~~y~~-~~~l~~IDa~~~~e~V~~~I~~~I~~~i~~ 409 (520)
..| .++..-..|++.+... .+.++. .+++++|||++++++|+++|.+.|...+++
T Consensus 148 ~~d---r~e~~~~~f~~~v~~~Y~~l~~~~~~~~~~IDa~~~~e~V~~~i~~~i~~~L~~ 204 (205)
T 4hlc_A 148 DQN---RLDQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLEK 204 (205)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHSCCTTEEEEETTSCHHHHHHHHHHHHHHHHC-
T ss_pred ccc---chhccCHHHHHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHhc
Confidence 222 2222222343333222 222222 246999999999999999999999887754
No 42
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.52 E-value=2.9e-14 Score=135.24 Aligned_cols=168 Identities=10% Similarity=0.071 Sum_probs=107.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHH----
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYA---- 299 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~---- 299 (520)
.+.+|+|+|+|||||||+|+.|++++ +..++++ ++++ + ...+++.|+.++.++..+..++......++..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l-~~~~~~~-~~~~---~-~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYL-KNNNVEV-KHLY---F-PNRETGIGQIISKYLKMENSMSNETIHLLFSANRWE 82 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHH-HHTTCCE-EEEE---S-SCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHH-HHcCCcE-EEEe---c-CCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 47899999999999999999999997 8888888 5666 2 23467888899998887777776544333321
Q ss_pred ---HHhccccCCCcEEEEeCCCCCH--HH-H------HHH---HhhcCCCCCEEEecCChhhhhcc---CCC-CCHHHHH
Q psy11031 300 ---EMKKTKYTEADGIVIDGFPREM--SQ-L------IDF---ENKYQIHPPMILIDCSKLVLHKG---QID-NSVSAFR 360 (520)
Q Consensus 300 ---~l~~~~~~~~~G~ILDGFPrt~--~Q-a------e~l---~~~~~~p~~VI~Ld~~~~~~~r~---R~d-D~~e~~~ 360 (520)
.+.. ....+..+|+|+|+.+. -+ + ..+ +..+..++.+|+|+||.+.+.++ |.+ ...+.+.
T Consensus 83 ~~~~i~~-~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~r~~~~~~~ 161 (212)
T 2wwf_A 83 HMNEIKS-LLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGEEIYEKVETQ 161 (212)
T ss_dssp THHHHHH-HHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTTSSTTCSHHHH
T ss_pred HHHHHHH-HHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccCcccccHHHHH
Confidence 1220 11235689999998651 11 1 122 22234567799999998764321 111 1113344
Q ss_pred HHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031 361 RRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK 405 (520)
Q Consensus 361 ~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~ 405 (520)
+|+...+... .. ...+++||++.+++++++.|.+.+..
T Consensus 162 ~~~~~~~~~~------~~-~~~~~~Id~~~~~~~~~~~i~~~l~~ 199 (212)
T 2wwf_A 162 KKIYETYKHF------AH-EDYWINIDATRKIEDIHNDIVKEVTK 199 (212)
T ss_dssp HHHHHHGGGG------TT-CTTEEEEECSSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH------hc-cCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 4443211111 11 34578899999999999999887754
No 43
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.51 E-value=2.2e-13 Score=126.90 Aligned_cols=157 Identities=13% Similarity=0.223 Sum_probs=103.7
Q ss_pred EEEEEcCCCCChhHHHHHHHhhC--CCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHH----------
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDY--PNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVL---------- 294 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~--~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~---------- 294 (520)
+|+|+|+|||||||+|+.|++++ .|+.++++.+ ..++..|..+++++.+|...+.....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~---------~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l 72 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE---------PGGTKVGEVLREILLTEELDERTELLLFEASRSKLI 72 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES---------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC---------CCCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 69999999999999999999974 2889998732 23456788888888888777764321
Q ss_pred -HHHHHHHhccccCCCcEEEEe----------CCCCCH--HHHHHHHhh---cCCCCCEEEecCChhhhh-c--cCC-CC
Q psy11031 295 -DIVYAEMKKTKYTEADGIVID----------GFPREM--SQLIDFENK---YQIHPPMILIDCSKLVLH-K--GQI-DN 354 (520)
Q Consensus 295 -~ll~~~l~~~~~~~~~G~ILD----------GFPrt~--~Qae~l~~~---~~~p~~VI~Ld~~~~~~~-r--~R~-dD 354 (520)
+++...+. .+..+|+| |||+.. .++..+... ...++.+|+|+||++.+. | +|. .+
T Consensus 73 ~~~i~~~l~-----~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~~~ 147 (195)
T 2pbr_A 73 EEKIIPDLK-----RDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKNRFE 147 (195)
T ss_dssp HHTHHHHHH-----TTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHh-----CCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhccCccc
Confidence 12222222 35568888 777754 355544322 225778999999997642 1 222 22
Q ss_pred CHHHHHHHH-HHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031 355 SVSAFRRRL-ELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK 405 (520)
Q Consensus 355 ~~e~~~~Rl-~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~ 405 (520)
..+ +.+|+ ..|.+.. +.| +.+++||++.++++++++|.+.+..
T Consensus 148 ~~~-~~~~~~~~~~~~~----~~~---~~~~~Id~~~~~~~~~~~i~~~l~~ 191 (195)
T 2pbr_A 148 NKE-FLEKVRKGFLELA----KEE---ENVVVIDASGEEEEVFKEILRALSG 191 (195)
T ss_dssp CHH-HHHHHHHHHHHHH----HHS---TTEEEEETTSCHHHHHHHHHHHHHT
T ss_pred hHH-HHHHHHHHHHHHH----hhC---CCEEEEECCCCHHHHHHHHHHHHHH
Confidence 344 44444 4454432 234 3578999999999999999887754
No 44
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=99.51 E-value=2.8e-13 Score=130.77 Aligned_cols=174 Identities=17% Similarity=0.213 Sum_probs=110.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCC---ccchHHHHHHHHHH
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGD---FVNRDVVLDIVYAE 300 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~---~vPd~lv~~ll~~~ 300 (520)
++.+|+|.|++|||||||+++|++++ +-..+++ .++| + +.++++|+.+++++.++. +-|.....-....|
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l-~~~~~~v-~~~~----~-p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R 77 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERL-RERGIEV-QLTR----E-PGGTPLAERIRELLLAPSDEPMAADTELLLMFAAR 77 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH-HTTTCCE-EEEE----S-SCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHH-HHcCCCc-cccc----C-CCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 46889999999999999999999875 3222222 1223 2 368899999999998774 23322221111122
Q ss_pred Hhc------cccCCCcEEEEeCCC------------CCHHHHHHHHhh---cCCCCCEEEecCChhhhh-c--cCC--CC
Q psy11031 301 MKK------TKYTEADGIVIDGFP------------REMSQLIDFENK---YQIHPPMILIDCSKLVLH-K--GQI--DN 354 (520)
Q Consensus 301 l~~------~~~~~~~G~ILDGFP------------rt~~Qae~l~~~---~~~p~~VI~Ld~~~~~~~-r--~R~--dD 354 (520)
... .....+..+|+|.|. .+.++...+... +..|+.+|+|+|+++... | .|. |.
T Consensus 78 ~~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~~dr 157 (213)
T 4edh_A 78 AQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRLDR 157 (213)
T ss_dssp HHHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSSCCT
T ss_pred HHHHHHHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcCc
Confidence 110 011246788999873 234666666653 356888999999998642 1 221 21
Q ss_pred C---HHHHHHHH-HHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH
Q psy11031 355 S---VSAFRRRL-ELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDDL 410 (520)
Q Consensus 355 ~---~e~~~~Rl-~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~~~ 410 (520)
. ...+.+|+ +.|.. +.+.|. +.+++|||++++++|++.|.+.|...+..+
T Consensus 158 ~E~~~~~~~~rv~~~y~~----l~~~~~--~~~~vIDa~~s~eeV~~~I~~~l~~~l~~~ 211 (213)
T 4edh_A 158 FEQEDRRFFEAVRQTYLQ----RAAQAP--ERYQVLDAGLPLAEVQAGLDRLLPNLLERL 211 (213)
T ss_dssp TTTSCHHHHHHHHHHHHH----HHHHCT--TTEEEEETTSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHH----HHHHCC--CcEEEEeCCCCHHHHHHHHHHHHHHHHHhh
Confidence 1 12333443 33432 333443 468999999999999999999998887654
No 45
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=99.50 E-value=1.4e-13 Score=133.02 Aligned_cols=166 Identities=14% Similarity=0.164 Sum_probs=106.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcC------CccchHH------
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAG------DFVNRDV------ 292 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G------~~vPd~l------ 292 (520)
+.+|+|.|++|||||||++.|++++ .-..++...+.| .+.++++|+.|++++..+ ..-|...
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l-~~~~~~~v~~~r-----ep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A 76 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETL-EQLGIRDMVFTR-----EPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYA 76 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHH-HHTTCCCEEEEE-----SSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-HHcCCCcceeee-----CCCCCHHHHHHHHHHhcccccccccCChHHHHHHHHH
Confidence 5789999999999999999999875 333331113334 347899999999999732 2233211
Q ss_pred -----HHHHHHHHHhccccCCCcEEEEeCCC------------CCHHHHHHHHhh---cCCCCCEEEecCChhhhh----
Q psy11031 293 -----VLDIVYAEMKKTKYTEADGIVIDGFP------------REMSQLIDFENK---YQIHPPMILIDCSKLVLH---- 348 (520)
Q Consensus 293 -----v~~ll~~~l~~~~~~~~~G~ILDGFP------------rt~~Qae~l~~~---~~~p~~VI~Ld~~~~~~~---- 348 (520)
+.+.+...+. .+..+|+|+|. .+.++...++.. +..|+.+|+|||+++...
T Consensus 77 ~R~~~~~~~i~paL~-----~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~ 151 (213)
T 4tmk_A 77 ARVQLVETVIKPALA-----NGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRAR 151 (213)
T ss_dssp HHHHHHHHTHHHHHH-----TTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----CCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHH
Confidence 1223333343 46789999873 235666655543 356888999999998632
Q ss_pred -ccCCCCCH---HHHHHHH-HHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHH
Q psy11031 349 -KGQIDNSV---SAFRRRL-ELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIID 408 (520)
Q Consensus 349 -r~R~dD~~---e~~~~Rl-~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~ 408 (520)
|++.|..+ ..+.+|+ +.|.+. . +..+.+++|||++++++|++.|.+.|...+.
T Consensus 152 ~R~~~dr~E~~~~~f~~rv~~~y~~l----a---~~~~~~~vIDa~~s~eeV~~~I~~~l~~~l~ 209 (213)
T 4tmk_A 152 ARGELDRIEQESFDFFNRTRARYLEL----A---AQDKSIHTIDATQPLEAVMDAIRTTVTHWVK 209 (213)
T ss_dssp HHSSCCTTTTSCHHHHHHHHHHHHHH----H---HTCTTEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred hcCCccchhhhHHHHHHHHHHHHHHH----H---HHCCcEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 23222211 1233333 233322 1 1225689999999999999999999988764
No 46
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.50 E-value=8.9e-14 Score=128.09 Aligned_cols=162 Identities=13% Similarity=0.094 Sum_probs=90.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHh-hCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhc
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQ-DYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKK 303 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~-k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~ 303 (520)
|.+|+|.|+|||||||+|+.|++ .+ |+.+++. |.+| ......+. +. +..+...++....+++.+++...+.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~-~~~~i~~-d~~r---~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~l~- 73 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNP-GFYNINR-DDYR---QSIMAHEE-RD-EYKYTKKKEGIVTGMQFDTAKSILY- 73 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHST-TEEEECH-HHHH---HHHTTSCC-GG-GCCCCHHHHHHHHHHHHHHHHHHHT-
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcC-CcEEecH-HHHH---HHhhCCCc-cc-hhhhchhhhhHHHHHHHHHHHHHHh-
Confidence 57899999999999999999998 66 9999998 5555 32222111 10 0111111222223445555666553
Q ss_pred cccCCCcEEEEeCCCCCHHHHHHHHhhc---CCCCCEEEecCChhhhh---ccCC--CCCHHHHHHHHHHHHHHhHHHHH
Q psy11031 304 TKYTEADGIVIDGFPREMSQLIDFENKY---QIHPPMILIDCSKLVLH---KGQI--DNSVSAFRRRLELFRERTLPMLR 375 (520)
Q Consensus 304 ~~~~~~~G~ILDGFPrt~~Qae~l~~~~---~~p~~VI~Ld~~~~~~~---r~R~--dD~~e~~~~Rl~~f~~~~~~l~~ 375 (520)
....+.+||+||++.+..+.+.+.+.. +.+..+|+|+|+.+.+. ..|. ..+.+.++++++.|....
T Consensus 74 -~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~i~~~~~~~~~~~----- 147 (181)
T 1ly1_A 74 -GGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYL----- 147 (181)
T ss_dssp -SCSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGGGCCCHHHHHHHHHHHHHHH-----
T ss_pred -hccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhccccCCCCHHHHHHHHHHhhccC-----
Confidence 224678999999999988877776432 23346899999987642 1232 557888899888887651
Q ss_pred HhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031 376 AMDVETRLTIVDGDTQLPQVREEFERVLKK 405 (520)
Q Consensus 376 ~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~ 405 (520)
.++ . ++||++.+ +.|...|...+..
T Consensus 148 ~~~---~-~~id~~~~-~~v~~~i~~~l~~ 172 (181)
T 1ly1_A 148 GLP---V-YNGTPGKP-KAVIFDVDGTLAK 172 (181)
T ss_dssp TCC---C-C---------------------
T ss_pred CCC---c-cccCCCCC-ceeeehhhhhhhc
Confidence 222 1 23788774 6777777665543
No 47
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.49 E-value=5.5e-13 Score=124.14 Aligned_cols=135 Identities=16% Similarity=0.345 Sum_probs=108.3
Q ss_pred HHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhc----CCCCCcEEEeCCCCCHHhHHHHHHhc---CCcCEEEEEEcCHH
Q psy11031 21 LKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMKM----SPAAKAFLISGYPRNMRDVVEYSDKI---KTINGVILIAWRQS 93 (520)
Q Consensus 21 G~~l~~~i~~G~~~g~lVPdelv~~ll~~~l~~----~~~~~G~ILDGFPRt~~QA~~~~~~~---~~pd~VI~L~~pd~ 93 (520)
|..++.++.+|. ++|++++..++..++.. .....+||+||||++..|+..|.... ..++.+|+|+||.+
T Consensus 50 ~~~~~~~~~~g~----~~~~~~~~~~l~~~~~~~~~~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e 125 (196)
T 1tev_A 50 GELIEKYIKEGK----IVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNE 125 (196)
T ss_dssp HHHHHHHHHTTC----CCCHHHHHHHHHHHHHHHHHHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHH
T ss_pred HHHHHHHHHCCC----cCCHHHHHHHHHHHHHhhhccccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHH
Confidence 333444455455 99999988888776643 12367999999999999886665533 25889999999999
Q ss_pred HHHHHh-hhCccCCccc--hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHHHHH
Q psy11031 94 LLERQI-DYGAKLGHVI--LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLK 159 (520)
Q Consensus 94 ~l~~Rl-~rg~~~~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l~~ 159 (520)
++.+|+ .|+...+|.+ .+.+.+|+..|.+...|++++|.+.+.++.||+++++++|+++|.+.+..
T Consensus 126 ~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 194 (196)
T 1tev_A 126 ICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDK 194 (196)
T ss_dssp HHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 999999 4554445654 67889999999999999999999888888999999999999999998865
No 48
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=99.48 E-value=1.6e-13 Score=134.59 Aligned_cols=169 Identities=15% Similarity=0.179 Sum_probs=107.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcC---CccchH-HH------
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAG---DFVNRD-VV------ 293 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G---~~vPd~-lv------ 293 (520)
++.+|+|.|++||||||||+.|++.+ +..++++..++| + +.++++|+.+++++..+ ..+... ..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l-~~~~~~~~~~~r----e-p~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~ 99 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETL-QQNGIDHITRTR----E-PGGTLLAEKLRALVKEEHPGEELQDITELLLVYAA 99 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHH-HHTTCCCEEEEE----S-SCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HhcCCCeeeeec----C-CCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHH
Confidence 57899999999999999999999986 666666445566 2 36899999999998632 223322 11
Q ss_pred -----HHHHHHHHhccccCCCcEEEEeCCC----------C--CHHHHHHHHhh---cCCCCCEEEecCChhhhh-c--c
Q psy11031 294 -----LDIVYAEMKKTKYTEADGIVIDGFP----------R--EMSQLIDFENK---YQIHPPMILIDCSKLVLH-K--G 350 (520)
Q Consensus 294 -----~~ll~~~l~~~~~~~~~G~ILDGFP----------r--t~~Qae~l~~~---~~~p~~VI~Ld~~~~~~~-r--~ 350 (520)
.+.+...+. .++.+|+|.|. + +.++...+... +..|+.+|+|+|+++... | +
T Consensus 100 R~~~~~~~I~paL~-----~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~ 174 (236)
T 3lv8_A 100 RVQLVENVIKPALA-----RGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARG 174 (236)
T ss_dssp HHHHHHHTHHHHHH-----TTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC---
T ss_pred HHHHHHHHHHHHHH-----cCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHh
Confidence 122233333 46789999773 2 24455555442 356788999999998642 2 2
Q ss_pred CC--CCC---HHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHHH
Q psy11031 351 QI--DNS---VSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDD 409 (520)
Q Consensus 351 R~--dD~---~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~~ 409 (520)
|. |.. ...+.+|+...+ .++++....+++|||++++++|+++|.+.|...+..
T Consensus 175 R~~~dr~E~~~~~~~~rv~~~y------~~la~~~~~~~vIDa~~sieeV~~~I~~~l~~~l~~ 232 (236)
T 3lv8_A 175 RGELDRIEKMDISFFERARERY------LELANSDDSVVMIDAAQSIEQVTADIRRALQDWLSQ 232 (236)
T ss_dssp --CCCTTTTSCHHHHHHHHHHH------HHHHHHCTTEEEEETTSCHHHHHHHHHHHHHHHHTT
T ss_pred cCCcchhhhhHHHHHHHHHHHH------HHHHHHCCCEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence 21 111 123333332211 122222223899999999999999999999876643
No 49
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.48 E-value=9.2e-13 Score=123.46 Aligned_cols=137 Identities=23% Similarity=0.364 Sum_probs=111.4
Q ss_pred HHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhcC-CCCCcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHh
Q psy11031 21 LKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMKMS-PAAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQI 99 (520)
Q Consensus 21 G~~l~~~i~~G~~~g~lVPdelv~~ll~~~l~~~-~~~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl 99 (520)
|..+++++.+|. .+|++++..++.+.+... ....+||+||||++..|+..|......++++|+|+||.+++.+|+
T Consensus 58 ~~~i~~~~~~g~----~~~~~~~~~~~~~~i~~~~~~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~ 133 (199)
T 2bwj_A 58 SKLIRDIMERGD----LVPSGIVLELLKEAMVASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRL 133 (199)
T ss_dssp HHHHHHHHHTTC----CCCHHHHHHHHHHHHHHHTTSCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHH
T ss_pred HHHHHHHHHcCC----cCCHHHHHHHHHHHHhcccccCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHH
Confidence 344444555555 999999999998887542 246799999999999999777665557999999999999999999
Q ss_pred -hhCccCCccc--hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHHHHHHh
Q psy11031 100 -DYGAKLGHVI--LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLKIL 161 (520)
Q Consensus 100 -~rg~~~~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l~~~~ 161 (520)
.|+....|.+ .+.+.+|+..|.....|+.++|...+.++.||+++++++++++|.+.+...+
T Consensus 134 ~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~~~~ 198 (199)
T 2bwj_A 134 LQMSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYETKTQLHKINAEGTPEDVFLQLCTAIDSIF 198 (199)
T ss_dssp HHTCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEETTSCHHHHHHHHHHHHHHHC
T ss_pred HcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHhc
Confidence 4543234543 5788999999999999999999887777999999999999999999988654
No 50
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.48 E-value=3.1e-13 Score=128.30 Aligned_cols=175 Identities=13% Similarity=0.125 Sum_probs=105.4
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHH---
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVY--- 298 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~--- 298 (520)
..++.+|+|+|+|||||||+|+.|++++ +..++++ +.++ + ...+++.|..++.++..+..++......++.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l-~~~~~~v-~~~~---~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r 79 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL-CAAGHRA-ELLR---F-PERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANR 79 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH-HHTTCCE-EEEE---S-SCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH-HHcCCcE-EEee---C-CCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 3567899999999999999999999986 7666666 3344 2 2224677888888887766666543321110
Q ss_pred ----HHHhccccCCCcEEEEeCCC-----C-------CHHHHHHHHhhcCCCCCEEEecCChhhhh-c-cCCCCC--HHH
Q psy11031 299 ----AEMKKTKYTEADGIVIDGFP-----R-------EMSQLIDFENKYQIHPPMILIDCSKLVLH-K-GQIDNS--VSA 358 (520)
Q Consensus 299 ----~~l~~~~~~~~~G~ILDGFP-----r-------t~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r-~R~dD~--~e~ 358 (520)
..+.. ....+..+|+|+|. + ..++...++.....++.+|+|+||.+.+. | .|..+. ...
T Consensus 80 ~~~~~~i~~-~l~~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~~~~~~~~~ 158 (215)
T 1nn5_A 80 WEQVPLIKE-KLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHERYENGA 158 (215)
T ss_dssp HTTHHHHHH-HHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC-----CTTCSHH
T ss_pred HHHHHHHHH-HHHCCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCccccchHH
Confidence 11220 11235679999542 2 23444444444445678999999987642 2 111111 112
Q ss_pred HHHHHHHHHHHhHHHHHHhhh-CCCEEEEECCCCHHHHHHHHHHHHHHHHHH
Q psy11031 359 FRRRLELFRERTLPMLRAMDV-ETRLTIVDGDTQLPQVREEFERVLKKIIDD 409 (520)
Q Consensus 359 ~~~Rl~~f~~~~~~l~~~y~~-~~~l~~IDa~~~~e~V~~~I~~~I~~~i~~ 409 (520)
+..|+... ..++... ...+++||++.+++++++.|.+.|...+..
T Consensus 159 ~~~~~~~~------~~~~~~~~~~~~~~Id~~~~~e~~~~~i~~~l~~~l~~ 204 (215)
T 1nn5_A 159 FQERALRC------FHQLMKDTTLNWKMVDASKSIEAVHEDIRVLSEDAIAT 204 (215)
T ss_dssp HHHHHHHH------HHHHTTCTTSCEEEEETTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH------HHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHhh
Confidence 22232211 1111111 235789999999999999999998877654
No 51
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.47 E-value=4.1e-13 Score=124.80 Aligned_cols=164 Identities=12% Similarity=0.085 Sum_probs=97.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCC-----CeeeehhhHHhhhhccc-ccCCcchHHHHhhhhcCCccch--HHHHHHH
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPN-----WTQISLGKLLRYFANIE-DDGEGLNSRIKSSVSAGDFVNR--DVVLDIV 297 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g-----~~~is~gdLlr~~~~~~-~~~t~~g~~i~~~l~~G~~vPd--~lv~~ll 297 (520)
++|+|+|+|||||||+|+.|++++ + +.+++.+++++ +.. ......+. -..+...+. ..+...+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l-~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 72 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL-DNQGINNKIINYGDFML---ATALKLGYAKDR-----DEMRKLSVEKQKKLQIDA 72 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH-HTTTCCEEEEEHHHHHH---HHHHTTTSCSSH-----HHHTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH-HhcCceEEEEECChHHH---HHHHhcccccch-----hhhhcCCHHHHHHHHHHH
Confidence 479999999999999999999987 7 89999999987 332 11111110 011234444 3334444
Q ss_pred HHHHhcccc--CCCcEEEEeCCCCCHHH--------HHHHHhhcCCCCCEEEecCChhhhh-c---c--CC--C-CCHHH
Q psy11031 298 YAEMKKTKY--TEADGIVIDGFPREMSQ--------LIDFENKYQIHPPMILIDCSKLVLH-K---G--QI--D-NSVSA 358 (520)
Q Consensus 298 ~~~l~~~~~--~~~~G~ILDGFPrt~~Q--------ae~l~~~~~~p~~VI~Ld~~~~~~~-r---~--R~--d-D~~e~ 358 (520)
..++.. .. ..+..||+|||+....| ...+... .++.+|+|+|+++... | . |. + ...+.
T Consensus 73 ~~~i~~-~l~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~vi~l~~~~~~~~~rr~~~~~R~~~~~~~~~~ 149 (194)
T 1nks_A 73 AKGIAE-EARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEI--NPSVIFLLEADPKIILSRQKRDTTRNRNDYSDESV 149 (194)
T ss_dssp HHHHHH-HHHHTCSSEEEEEECSEEEETTEEEESSCHHHHHHH--CCSEEEEEECCHHHHHHHHHHCTTTCCCCCCSHHH
T ss_pred HHHHHH-HhhccCCCEEEECCchhhccccccccCCCHHHHHhc--CCCEEEEEeCCHHHHHHHHHhhcccCCCCccCHHH
Confidence 444441 11 35678999998653333 2333332 3677999999986522 2 2 32 1 23343
Q ss_pred HHHHHHHHHHHhHHHHHHhhhCCCEEEE-ECCCCHHHHHHHHHHHH
Q psy11031 359 FRRRLELFRERTLPMLRAMDVETRLTIV-DGDTQLPQVREEFERVL 403 (520)
Q Consensus 359 ~~~Rl~~f~~~~~~l~~~y~~~~~l~~I-Da~~~~e~V~~~I~~~I 403 (520)
+..+ ...++........|.. ..+++| |++.++++++++|.+.|
T Consensus 150 ~~~~-~~~~~~~~~~~~~~~~-~~~~~I~d~~~~~e~v~~~I~~~l 193 (194)
T 1nks_A 150 ILET-INFARYAATASAVLAG-STVKVIVNVEGDPSIAANEIIRSM 193 (194)
T ss_dssp HHHH-HHHHHHHHHHHHHHHT-CEEEEEECCSSCHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHhcC-CcEEEEeCCCCCHHHHHHHHHHHh
Confidence 3211 1122222333344422 347889 99999999999998765
No 52
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.47 E-value=1.3e-12 Score=121.31 Aligned_cols=135 Identities=16% Similarity=0.318 Sum_probs=110.9
Q ss_pred HHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHhcC---CcCEEEEEEcCHHHHH
Q psy11031 20 PLKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIK---TINGVILIAWRQSLLE 96 (520)
Q Consensus 20 ~G~~l~~~i~~G~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~~~---~pd~VI~L~~pd~~l~ 96 (520)
.|..+++++.+|. ++|++++..++.+.+... ...++|+||||++..|+..|..... .++.||+|+||.+++.
T Consensus 51 ~~~~i~~~~~~g~----~~~~~~~~~~l~~~i~~~-~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~ 125 (194)
T 1qf9_A 51 DGEMIATMIKNGE----IVPSIVTVKLLKNAIDAN-QGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMT 125 (194)
T ss_dssp THHHHHHHHHTTC----CCCHHHHHHHHHHHHHTS-TTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHH
T ss_pred HHHHHHHHHHCCC----CCCHHHHHHHHHHHHHhc-CCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHH
Confidence 3444445555555 999999999999888653 5678999999999999877754433 6899999999999999
Q ss_pred HHh-hhCccCCccc--hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHHHHH
Q psy11031 97 RQI-DYGAKLGHVI--LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLK 159 (520)
Q Consensus 97 ~Rl-~rg~~~~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l~~ 159 (520)
+|+ .|+..++|.+ .+.+.+|+..|.++..++.++|...+.++.||+++++++++++|.+.+..
T Consensus 126 ~R~~~R~~~~~r~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~i~~~l~~ 191 (194)
T 1qf9_A 126 QRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFKS 191 (194)
T ss_dssp HHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred HHHHhccccCCCCCCCHHHHHHHHHHHHHhHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 999 4544335553 77899999999999999999998877789999999999999999999875
No 53
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=99.45 E-value=3.2e-12 Score=123.65 Aligned_cols=169 Identities=12% Similarity=0.218 Sum_probs=108.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCC--ccchHHHH-------
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGD--FVNRDVVL------- 294 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~--~vPd~lv~------- 294 (520)
++..|+|.|++||||||+++.|++++ +.. +.+++ +...++++|+.|++++..+. .-|.....
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l-~~~----~~~~~----ep~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~ 74 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKL-QPN----CKLLK----FPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRW 74 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHH-CSS----EEEEE----SSCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-ccc----ceEEE----ecCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999997 652 24445 33458999999999997654 22221111
Q ss_pred ---HHHHHHHhccccCCCcEEEEeCCC--------------CCHHHHHHHHhhcCCCCCEEEe-cCChhhhhcc---CCC
Q psy11031 295 ---DIVYAEMKKTKYTEADGIVIDGFP--------------REMSQLIDFENKYQIHPPMILI-DCSKLVLHKG---QID 353 (520)
Q Consensus 295 ---~ll~~~l~~~~~~~~~G~ILDGFP--------------rt~~Qae~l~~~~~~p~~VI~L-d~~~~~~~r~---R~d 353 (520)
+.+...+. .++.+|+|.|. ..+++...+...+..|+.+|+| |++.+...++ +.+
T Consensus 75 ~~~~~I~paL~-----~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~~d 149 (216)
T 3tmk_A 75 EIVDKIKKDLL-----EGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDE 149 (216)
T ss_dssp TTHHHHHHHHH-----TTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSSCC
T ss_pred HHHHHHHHHHH-----cCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccCcc
Confidence 12222233 46778999883 2455555554455568889999 9999864321 111
Q ss_pred --CCHHHHHHHHHH-HHHHhHHHHHHhhhCCCEEEEE-CCCCHHHHHHHHHHHHHHHHHH
Q psy11031 354 --NSVSAFRRRLEL-FRERTLPMLRAMDVETRLTIVD-GDTQLPQVREEFERVLKKIIDD 409 (520)
Q Consensus 354 --D~~e~~~~Rl~~-f~~~~~~l~~~y~~~~~l~~ID-a~~~~e~V~~~I~~~I~~~i~~ 409 (520)
+. ..+.+|+.. |.+....... | ....+++|| |++++++|++.|.+.|...+..
T Consensus 150 r~E~-~~f~~rvr~~Y~~la~~~~~-~-~~~~~~vID~a~~s~eeV~~~I~~~i~~~l~~ 206 (216)
T 3tmk_A 150 RYET-VKFQEKVKQTFMKLLDKEIR-K-GDESITIVDVTNKGIQEVEALIWQIVEPVLST 206 (216)
T ss_dssp TTCC-HHHHHHHHHHHHHHHHHHHH-T-TCCSEEEEECTTCCHHHHHHHHHHHHHHHHHS
T ss_pred cccH-HHHHHHHHHHHHHHHHhccc-c-CCCCEEEEeCCCCCHHHHHHHHHHHHHHHHhc
Confidence 12 233334333 2222211111 1 235799999 9999999999999999887643
No 54
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=99.44 E-value=4.7e-13 Score=130.16 Aligned_cols=173 Identities=13% Similarity=0.116 Sum_probs=102.2
Q ss_pred ccCCCCCeEEEEEcCCCCChhHHHHHHHhhCCCC-eeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHH----
Q psy11031 219 SVERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNW-TQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVV---- 293 (520)
Q Consensus 219 ~~~~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~-~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv---- 293 (520)
++...++..|+|.|++||||||+++.|++++ +. ..+++--+.| .+.++++|+.|++++...........
T Consensus 15 ~~~~~~~~~i~~~G~~g~GKst~~~~l~~~l-~~~~g~~v~~~tr-----eP~~t~~g~~ir~~l~~~~~~~~~~e~llf 88 (223)
T 3ld9_A 15 QTQGPGSMFITFEGIDGSGKTTQSHLLAEYL-SEIYGVNNVVLTR-----EPGGTLLNESVRNLLFKAQGLDSLSELLFF 88 (223)
T ss_dssp ----CCCEEEEEECSTTSSHHHHHHHHHHHH-HHHHCGGGEEEEE-----SSCSSHHHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHHH-hhccCceeeEeee-----CCCCChHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 4456678999999999999999999999986 44 3333321123 34678999999999875322332221
Q ss_pred --------HHHHHHHHhccccCCCcEEEEeCCC------------CCHHHHHHHHhhcC--CCCCEEEecCChhhhhccC
Q psy11031 294 --------LDIVYAEMKKTKYTEADGIVIDGFP------------REMSQLIDFENKYQ--IHPPMILIDCSKLVLHKGQ 351 (520)
Q Consensus 294 --------~~ll~~~l~~~~~~~~~G~ILDGFP------------rt~~Qae~l~~~~~--~p~~VI~Ld~~~~~~~r~R 351 (520)
.+++...+. .++.+|+|+|. .+.++...+..... .|+.+|+|+++++...++.
T Consensus 89 ~a~R~~~~~~~I~paL~-----~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~~~PDl~I~Ldv~~e~~~~Ri 163 (223)
T 3ld9_A 89 IAMRREHFVKIIKPSLM-----QKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVDINESLSRS 163 (223)
T ss_dssp HHHHHHHHHHTHHHHHH-----TTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCSSCCSEEEEEECC--------
T ss_pred HHHHHHHHHHHHHHHHh-----cCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhcCCCCeEEEEeCCHHHHHHHh
Confidence 111222222 45678999884 34666677766553 6788999999998643221
Q ss_pred CCCCH----HHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHH
Q psy11031 352 IDNSV----SAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIID 408 (520)
Q Consensus 352 ~dD~~----e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~ 408 (520)
..|.- ..+.+|+... ...+.+.| .+.+++|||++++++| ++|.+.|...+.
T Consensus 164 ~rdr~E~~~~e~~~rv~~~---y~~la~~~--~~~~~vIDa~~sieeV-~~I~~~l~~~lg 218 (223)
T 3ld9_A 164 CKNGYEFADMEFYYRVRDG---FYDIAKKN--PHRCHVITDKSETYDI-DDINFVHLEVIK 218 (223)
T ss_dssp --------CHHHHHHHHHH---HHHHHHHC--TTTEEEEESSCSSSCC-CHHHHHHHHHHH
T ss_pred ccCccccchHHHHHHHHHH---HHHHHHHC--CCCEEEEcCCCCHHHH-HHHHHHHHHHHh
Confidence 11111 1222222211 12222333 2468999999999999 999999887764
No 55
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.43 E-value=1.8e-12 Score=122.63 Aligned_cols=158 Identities=17% Similarity=0.135 Sum_probs=103.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhc
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKK 303 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~ 303 (520)
.+.+|+|+|+|||||||+|+.|++.+ |+.+++.+++.. ... ...+..|....+......+. .+..
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~l-g~~~i~~d~~~~---~~~----------~~~~~~g~~~~~~~~~~~~~-~l~~ 81 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEAC-GYPFIEGDALHP---PEN----------IRKMSEGIPLTDDDRWPWLA-AIGE 81 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHH-TCCEEEGGGGCC---HHH----------HHHHHHTCCCCHHHHHHHHH-HHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-CCEEEeCCcCcc---hhh----------HHHHhcCCCCCchhhHHHHH-HHHH
Confidence 46789999999999999999999997 999999987764 111 11122233333322222222 1220
Q ss_pred cccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhc---cC--CCCCHHHHHHHHHHHHHHhHHHHHHhh
Q psy11031 304 TKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHK---GQ--IDNSVSAFRRRLELFRERTLPMLRAMD 378 (520)
Q Consensus 304 ~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r---~R--~dD~~e~~~~Rl~~f~~~~~~l~~~y~ 378 (520)
....+.+||+|+......+.+.+......+..+|+|+|+.+.+.+ .| .....+.+++.++.+. + .|.
T Consensus 82 -~~~~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~~~~~~----~---~~~ 153 (202)
T 3t61_A 82 -RLASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGHFMPSSLLQTQLETLE----D---PRG 153 (202)
T ss_dssp -HHTSSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSSCCCHHHHHHHHHHCC----C---CTT
T ss_pred -HHhcCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhccCCCHHHHHHHHHhcC----C---CCC
Confidence 123567899999888888888888877656679999999876421 22 1123444433333221 1 122
Q ss_pred hCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031 379 VETRLTIVDGDTQLPQVREEFERVLKK 405 (520)
Q Consensus 379 ~~~~l~~IDa~~~~e~V~~~I~~~I~~ 405 (520)
....++||++.+++++.+.|...|..
T Consensus 154 -~~~~~~Id~~~~~~e~~~~I~~~l~~ 179 (202)
T 3t61_A 154 -EVRTVAVDVAQPLAEIVREALAGLAR 179 (202)
T ss_dssp -STTEEEEESSSCHHHHHHHHHHHHHH
T ss_pred -CCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 22467899999999999999988865
No 56
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.43 E-value=4.1e-13 Score=126.85 Aligned_cols=162 Identities=7% Similarity=0.059 Sum_probs=92.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCe--eeehhhHHhhhhcccccCCcchHHHHhhhhcCCc--cchHHHHHHH--
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWT--QISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDF--VNRDVVLDIV-- 297 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~--~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~--vPd~lv~~ll-- 297 (520)
++.+|+|+|+|||||||+|+.|++++ +.. .+.+ + .+.|+.+++++..+.. .++.....++
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l-~~~g~~~~~----~---------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 68 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWI-ELKRDVYLT----E---------WNSSDWIHDIIKEAKKKDLLTPLTFSLIHA 68 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH-TTTSCEEEE----E---------TTCCCHHHHHHHHHTTTSCCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH-hhcCCEEEe----c---------CCcHHHHHHHHhccccccCCCHHHHHHHHH
Confidence 36789999999999999999999987 653 2221 1 1133445555543321 1222211111
Q ss_pred HH-------HHhccccCCCcEEEEeCCCCCH-----------HHHHHHHhhcCCCCCEEEecCChhhhh-c---cCCC-C
Q psy11031 298 YA-------EMKKTKYTEADGIVIDGFPREM-----------SQLIDFENKYQIHPPMILIDCSKLVLH-K---GQID-N 354 (520)
Q Consensus 298 ~~-------~l~~~~~~~~~G~ILDGFPrt~-----------~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r---~R~d-D 354 (520)
.. .+.. ....+..+|+||||.+. +++..+...+..++.+|+|+|+.+.+. | +|.. +
T Consensus 69 ~~r~~~~~~~i~~-~l~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~~~~ 147 (213)
T 2plr_A 69 TDFSDRYERYILP-MLKSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKRKIK 147 (213)
T ss_dssp HHHHHHHHHTHHH-HHHTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHH-HHhCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccccc
Confidence 11 1110 11245689999999763 334455555555778999999987532 1 2321 1
Q ss_pred C-------------H---HHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHH
Q psy11031 355 S-------------V---SAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKII 407 (520)
Q Consensus 355 ~-------------~---e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i 407 (520)
. . +.+.+|+..++.. +... ..+++||++.++++|++.|.+.|...+
T Consensus 148 ~~~~g~~~~~~~d~~e~~~~~~~r~~~~~~~------~~~~-~~~~~Id~~~~~e~v~~~I~~~l~~~~ 209 (213)
T 2plr_A 148 PQEAGADIFPGLSPEEGFLKYQGLITEVYDK------LVKD-ENFIVIDGTKTPKEIQIQIRKFVGELI 209 (213)
T ss_dssp TTTTTTTTCTTSCHHHHHHHHHHHHHHHHHH------HTTT-TTCEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccchhhhHHHHHHHHHHHHHH------HHhh-CCEEEEECCCCHHHHHHHHHHHHHHHh
Confidence 1 1 1233333322221 1111 147889999999999999998887543
No 57
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.42 E-value=6.7e-13 Score=123.34 Aligned_cols=164 Identities=13% Similarity=0.161 Sum_probs=94.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCC-----CeeeehhhHHhhhhcccc-cCCcchHHHHhhhhcCCccc--hHHHHHH
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPN-----WTQISLGKLLRYFANIED-DGEGLNSRIKSSVSAGDFVN--RDVVLDI 296 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g-----~~~is~gdLlr~~~~~~~-~~t~~g~~i~~~l~~G~~vP--d~lv~~l 296 (520)
+.+|+|.|+|||||||+|+.|++++ + +.++++++++| +... .+.. ....++. ...+ ...+...
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l-~~~g~~~~~i~~~~~~r---~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~ 73 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL-RKEGVNYKMVSFGSVMF---EVAKEENLV--SDRDQMR---KMDPETQKRIQKM 73 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH-HTTTCCCEEEEHHHHHH---HHHHHTTSC--SSGGGGS---SCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-HhcCcceEEEehHHHHH---HHHhccCCC--CCHHHHh---cCCHHHHHHHHHH
Confidence 4689999999999999999999987 8 99999999998 3321 1110 0011111 1111 1222333
Q ss_pred HHHHHhccccCCCcEEEEeCCCCCHHHH--------HHHHhhcCCCCCEEEecCChhhhh--------ccCCCCCHHHHH
Q psy11031 297 VYAEMKKTKYTEADGIVIDGFPREMSQL--------IDFENKYQIHPPMILIDCSKLVLH--------KGQIDNSVSAFR 360 (520)
Q Consensus 297 l~~~l~~~~~~~~~G~ILDGFPrt~~Qa--------e~l~~~~~~p~~VI~Ld~~~~~~~--------r~R~dD~~e~~~ 360 (520)
+.+.+. ......+||+||++....++ ..+... .++.+|||+||.+.+. |+|...+.+.+.
T Consensus 74 ~~~~i~--~~~~~~~viid~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~~~~~~~~~rRl~~~~R~r~~~~~~~~~ 149 (192)
T 1kht_A 74 AGRKIA--EMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNEL--NPDLIIVVETTGDEILMRRMSDETRVRDLDTASTIE 149 (192)
T ss_dssp HHHHHH--HHHTTSCEEEECCSEEEETTEEEESSCHHHHHHH--CCSEEEEEECCHHHHHHHHHTSSSCSSSCCCHHHHH
T ss_pred HHHHHH--hhccCCeEEEccceeccccccccccCcHHHHhcc--CCCEEEEEeCCHHHHHHHHhhhcccCCCcCCHHHHH
Confidence 333343 22235689999986421111 122222 2567999999987642 233444555554
Q ss_pred HHHHHHHHHhHHHHHHhhhCCCEEEE-ECCCCHHHHHHHHHHHH
Q psy11031 361 RRLELFRERTLPMLRAMDVETRLTIV-DGDTQLPQVREEFERVL 403 (520)
Q Consensus 361 ~Rl~~f~~~~~~l~~~y~~~~~l~~I-Da~~~~e~V~~~I~~~I 403 (520)
.+... +.........|.. ..++.| |++.+++++++.|.+.|
T Consensus 150 ~~~~~-~~~~~~~~~~~~~-~~~~~i~~~~~~~e~~~~~i~~~i 191 (192)
T 1kht_A 150 QHQFM-NRCAAMSYGVLTG-ATVKIVQNRNGLLDQAVEELTNVL 191 (192)
T ss_dssp HHHHH-HHHHHHHHHHHHC-CEEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHhcC-CcEEEEeCCCCCHHHHHHHHHHHh
Confidence 44332 2233333344433 234455 55567999999998765
No 58
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.41 E-value=2.4e-12 Score=120.46 Aligned_cols=162 Identities=20% Similarity=0.261 Sum_probs=101.2
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCC--CCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHH-------HH
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYP--NWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLD-------IV 297 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~--g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~-------ll 297 (520)
+|+|.|++||||||+|++|++++. |+.++++ + + ..+++.|..+++++..|...|.....- .+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~----~----~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 72 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK----R----E-PGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLV 72 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE----E----S-SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe----e----C-CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 699999999999999999998721 7777755 2 2 456778999999998887777543322 12
Q ss_pred HHHHhccccCCCcEEEEe----------CCCCCHH--H---HHHHHhhcCCCCCEEEecCChhhhh-----ccCCCCCHH
Q psy11031 298 YAEMKKTKYTEADGIVID----------GFPREMS--Q---LIDFENKYQIHPPMILIDCSKLVLH-----KGQIDNSVS 357 (520)
Q Consensus 298 ~~~l~~~~~~~~~G~ILD----------GFPrt~~--Q---ae~l~~~~~~p~~VI~Ld~~~~~~~-----r~R~dD~~e 357 (520)
.. +.. ....+..+|+| |+++... + ...+......|+.+|+|+||++.+. |.|.++ .+
T Consensus 73 ~~-i~~-~l~~g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~-~~ 149 (197)
T 2z0h_A 73 TE-IKQ-YLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNRFEK-RE 149 (197)
T ss_dssp HH-HTT-C----CEEEEESCHHHHHHHTTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CCCCC-HH
T ss_pred HH-HHH-HHhCCCEEEECCChhHHHHHHHhccCCCHHHHHHHHHHhcCCCCCCEEEEEeCCHHHHHHHHhccCcccH-HH
Confidence 22 331 12234668888 4465433 2 2223333446788999999998642 223222 33
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHH
Q psy11031 358 AFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKI 406 (520)
Q Consensus 358 ~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~ 406 (520)
.+++....|.+ +.+.| ...+++||++.++++++++|.+.|...
T Consensus 150 ~~~~~~~~~~~----~~~~~--~~~~~~Id~~~~~e~~~~~i~~~l~~~ 192 (197)
T 2z0h_A 150 FLERVREGYLV----LAREH--PERIVVLDGKRSIEEIHRDVVREVKRR 192 (197)
T ss_dssp HHHHHHHHHHH----HHHHC--TTTEEEEETTSCHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHH----HHHhC--CCCEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 33333333433 23333 235788999999999999998887543
No 59
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.41 E-value=3.1e-12 Score=120.91 Aligned_cols=130 Identities=15% Similarity=0.253 Sum_probs=103.8
Q ss_pred HHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHH----hcCCcCEEEEEEcCHHHH
Q psy11031 20 PLKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSD----KIKTINGVILIAWRQSLL 95 (520)
Q Consensus 20 ~G~~l~~~i~~G~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~----~~~~pd~VI~L~~pd~~l 95 (520)
.|..+++++.+|. ++|++.+..++.+++....+..|||+||||++..|+..|.. .+..|+.||+|+||.+++
T Consensus 65 ~g~~i~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~ 140 (201)
T 2cdn_A 65 LGVEAKRYLDAGD----LVPSDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVL 140 (201)
T ss_dssp HHHHHHHHHHHTC----CCCHHHHHHHHHHHTTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHH
T ss_pred HHHHHHHHHHcCC----cccHHHHHHHHHHHHhcccCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHH
Confidence 3444455555565 99999999999988865345679999999999999865443 234689999999999999
Q ss_pred HHHh-hhCccCCccchHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHHH
Q psy11031 96 ERQI-DYGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAV 157 (520)
Q Consensus 96 ~~Rl-~rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l 157 (520)
.+|+ .|+.. ..+++.+.+|+..|.+...|+.++|. ..++.||+++++++|+++|.+.+
T Consensus 141 ~~Rl~~R~r~--~~~~e~~~~r~~~~~~~~~~~~~~~~--~~~~~Id~~~~~eev~~~I~~~l 199 (201)
T 2cdn_A 141 LERLKGRGRA--DDTDDVILNRMKVYRDETAPLLEYYR--DQLKTVDAVGTMDEVFARALRAL 199 (201)
T ss_dssp HHHHHHHCCT--TCSHHHHHHHHHHHHHHTTTHHHHTT--TTEEEEECCSCHHHHHHHHHHHT
T ss_pred HHHHHcCCCC--CCCHHHHHHHHHHHHHhhHHHHHHhc--CcEEEEeCCCCHHHHHHHHHHHH
Confidence 9999 45311 12477889999999999999999994 35899999999999999998876
No 60
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.40 E-value=9.5e-13 Score=124.65 Aligned_cols=160 Identities=14% Similarity=0.159 Sum_probs=105.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh-cCCccchHHHHHHHHHHH
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS-AGDFVNRDVVLDIVYAEM 301 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~-~G~~vPd~lv~~ll~~~l 301 (520)
....+|+|+|+|||||||+++.|++++ |+.+++.++++. ... |..+.+++. .|. .....+....+
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l-~~~~i~~d~~~~---~~~------g~~i~~~~~~~~~----~~~~~~e~~~l 88 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKL-NVPFIDLDWYIE---ERF------HKTVGELFTERGE----AGFRELERNML 88 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH-TCCEEEHHHHHH---HHH------TSCHHHHHHHHHH----HHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHc-CCCEEcchHHHH---HHh------CCcHHHHHHhcCh----HHHHHHHHHHH
Confidence 345789999999999999999999997 999999999887 321 222333332 222 11222222222
Q ss_pred hccccCCCcEEEEe---CCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh------c-cCC---CCCHHHHHHHHHHHHH
Q psy11031 302 KKTKYTEADGIVID---GFPREMSQLIDFENKYQIHPPMILIDCSKLVLH------K-GQI---DNSVSAFRRRLELFRE 368 (520)
Q Consensus 302 ~~~~~~~~~G~ILD---GFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~------r-~R~---dD~~e~~~~Rl~~f~~ 368 (520)
. ......+|||+ |.+...+..+.+.. +..+|||+|+.+.+. + .|+ +++.+.+..++..+..
T Consensus 89 ~--~l~~~~~~vi~~ggg~~~~~~~~~~l~~----~~~vi~L~~~~e~l~~Rl~~~~~~Rp~~~~~~~~~~~~~i~~~~~ 162 (199)
T 3vaa_A 89 H--EVAEFENVVISTGGGAPCFYDNMEFMNR----TGKTVFLNVHPDVLFRRLRIAKQQRPILQGKEDDELMDFIIQALE 162 (199)
T ss_dssp H--HHTTCSSEEEECCTTGGGSTTHHHHHHH----HSEEEEEECCHHHHHHHHHHTGGGCGGGTTCCHHHHHHHHHHHHH
T ss_pred H--HHhhcCCcEEECCCcEEccHHHHHHHHc----CCEEEEEECCHHHHHHHHhcCCCCCCCcCCCChhhHHHHHHHHHH
Confidence 2 22245678998 77877777776654 467999999997532 1 232 3456666777766665
Q ss_pred HhHHHHHHhhhCCCEEEEECCC-CHHHHHHHHHHHHHHHH
Q psy11031 369 RTLPMLRAMDVETRLTIVDGDT-QLPQVREEFERVLKKII 407 (520)
Q Consensus 369 ~~~~l~~~y~~~~~l~~IDa~~-~~e~V~~~I~~~I~~~i 407 (520)
...+ +|... -++||++. +++++.+.|.+.|...+
T Consensus 163 ~r~~---~y~~a--d~~Idt~~~s~ee~~~~I~~~l~~~l 197 (199)
T 3vaa_A 163 KRAP---FYTQA--QYIFNADELEDRWQIESSVQRLQELL 197 (199)
T ss_dssp HHHH---HHTTS--SEEEECCCCSSHHHHHHHHHHHHHHT
T ss_pred HHHH---HHhhC--CEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 5544 45542 35688887 99999999998887654
No 61
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=99.37 E-value=3e-12 Score=121.96 Aligned_cols=164 Identities=17% Similarity=0.210 Sum_probs=101.8
Q ss_pred EEEEEcCCCCChhHHHHHHHhhC--CCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHH------H
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDY--PNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIV------Y 298 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~--~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll------~ 298 (520)
.|+|.|+.||||||||++|++++ .|..++.+ | .+.+++.++.++.++..+...|.....-.. .
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t----r-----eP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~ 72 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK----R-----EPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLV 72 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE----E-----SSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE----E-----CCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHH
Confidence 68999999999999999998864 14444433 2 357889999999988877766654332111 1
Q ss_pred HHHhccccCCCcEEEEeCCC------------CCHHHHHHHHhh---cCCCCCEEEecCChhhhh-ccCCC---CCHHHH
Q psy11031 299 AEMKKTKYTEADGIVIDGFP------------REMSQLIDFENK---YQIHPPMILIDCSKLVLH-KGQID---NSVSAF 359 (520)
Q Consensus 299 ~~l~~~~~~~~~G~ILDGFP------------rt~~Qae~l~~~---~~~p~~VI~Ld~~~~~~~-r~R~d---D~~e~~ 359 (520)
..+.. ....++.+|+|+|- ...++...+... ...|+.+|+||++++... |.... .+.+ +
T Consensus 73 ~~I~~-~L~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~dr~e~~e-f 150 (197)
T 3hjn_A 73 TEIKQ-YLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNRFEKRE-F 150 (197)
T ss_dssp HHHHH-HHTTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CTTCCHH-H
T ss_pred HHHHH-HHHCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcCccccHH-H
Confidence 22220 23356778999884 223444444332 345788999999998643 22111 1222 2
Q ss_pred HHHH-HHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHH
Q psy11031 360 RRRL-ELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKII 407 (520)
Q Consensus 360 ~~Rl-~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i 407 (520)
.+|. +.|.+ +.+.+ ..++++|||++++++|+++|.+.|.+.+
T Consensus 151 ~~rv~~~y~~----la~~~--~~~~~~IDa~~~~eeV~~~I~~~i~~rl 193 (197)
T 3hjn_A 151 LERVREGYLV----LAREH--PERIVVLDGKRSIEEIHRDVVREVKRRW 193 (197)
T ss_dssp HHHHHHHHHH----HHHHC--TTTEEEEETTSCHHHHHHHHHHHHSCC-
T ss_pred HHHHHHHHHH----HHHhC--CCCEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence 2222 22222 22222 2468999999999999999998887654
No 62
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.37 E-value=3.7e-12 Score=118.32 Aligned_cols=128 Identities=21% Similarity=0.376 Sum_probs=101.5
Q ss_pred HHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHH----hcCCcCEEEEEEcCHHHHH
Q psy11031 21 LKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSD----KIKTINGVILIAWRQSLLE 96 (520)
Q Consensus 21 G~~l~~~i~~G~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~----~~~~pd~VI~L~~pd~~l~ 96 (520)
|..+++++.+|. .+|++.+..++.+++. .|||+||||++..|+..+.. .+..++.||+|+||.+++.
T Consensus 50 ~~~i~~~~~~g~----~~~~~~~~~~~~~~l~-----~~~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~ 120 (186)
T 3cm0_A 50 GERVRPIMERGD----LVPDDLILELIREELA-----ERVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELV 120 (186)
T ss_dssp HHHHHHHHHTTC----CCCHHHHHHHHHHHCC-----SEEEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHH
T ss_pred HHHHHHHHHcCC----cCCHHHHHHHHHHHhc-----CCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHH
Confidence 333444455555 9999999998887764 25999999999999855432 2225899999999999999
Q ss_pred HHh-hhCccCCcc--chHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHHH
Q psy11031 97 RQI-DYGAKLGHV--ILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAV 157 (520)
Q Consensus 97 ~Rl-~rg~~~~r~--d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l 157 (520)
+|+ .|+...+|. ..+.+.+|+..|.+.+.|+.++|.+.+.++.||+++++++|+++|.+.+
T Consensus 121 ~R~~~R~~~~~r~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~~~~id~~~~~~~v~~~i~~~l 184 (186)
T 3cm0_A 121 RRILRRAELEGRSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRVDGLGTPDEVYARIRAAL 184 (186)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHH
T ss_pred HHHHhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHh
Confidence 999 453212343 3678899999999999999999998888999999999999999998876
No 63
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.35 E-value=1.8e-12 Score=124.30 Aligned_cols=167 Identities=16% Similarity=0.268 Sum_probs=94.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhccc----ccCCcch--HHHHhh-----------------
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIE----DDGEGLN--SRIKSS----------------- 281 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~----~~~t~~g--~~i~~~----------------- 281 (520)
+.+|.|+|++||||||+|+.|++.| |+.+++.|++++ ... ..+..+. ..+...
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~-g~~~~d~g~i~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL-QWHLLDSGAIYR---VLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEV 80 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH-TCEEEEHHHHHH---HHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh-CCCcccCcceee---hhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceE
Confidence 4689999999999999999999998 999999999998 321 1222221 111111
Q ss_pred hhcCCccchHHHH-------------HHHHHHHhcc--ccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhh
Q psy11031 282 VSAGDFVNRDVVL-------------DIVYAEMKKT--KYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLV 346 (520)
Q Consensus 282 l~~G~~vPd~lv~-------------~ll~~~l~~~--~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~ 346 (520)
+..|..+++.+.. +.+...+... ......|||+||+... + ..+..++.+|||+|+.+.
T Consensus 81 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~~~~--~-----~~~~~~d~~i~l~~~~e~ 153 (227)
T 1cke_A 81 ILEGEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMG--T-----VVFPDAPVKIFLDASSEE 153 (227)
T ss_dssp EETTEECHHHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEESSCC--C-----CCCTTCSEEEEEECCHHH
T ss_pred EECCeeCchhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECCCcc--c-----eEecCCCEEEEEeCCHHH
Confidence 1234444333211 2233333210 2235679999998432 1 233456779999999875
Q ss_pred hh-c------cCC-CCCHHH----HHHHHH-HHHHHhHHHHHHhhhCCCEEEEECC-CCHHHHHHHHHHHHHHH
Q psy11031 347 LH-K------GQI-DNSVSA----FRRRLE-LFRERTLPMLRAMDVETRLTIVDGD-TQLPQVREEFERVLKKI 406 (520)
Q Consensus 347 ~~-r------~R~-dD~~e~----~~~Rl~-~f~~~~~~l~~~y~~~~~l~~IDa~-~~~e~V~~~I~~~I~~~ 406 (520)
+. | .|. ..+.+. +.+|+. .|.....++..+++ .++||++ .++++|+++|.+.+...
T Consensus 154 ~~~R~~~~l~~rg~~~~~~~~~~~i~~R~~~~~~~~~~pl~~~~~----~~~Id~~~~~~~ev~~~I~~~l~~~ 223 (227)
T 1cke_A 154 RAHRRMLQLQVKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAAD----ALVLDSTTLSIEQVIEKALQYARQK 223 (227)
T ss_dssp HHHHHHHHHHHHTCCCCHHHHHHHHC-------------CCCCTT----CEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCccCCHHHHHHHHHHHHHhhhhhcccCccCCCC----EEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 32 2 111 112222 333322 23333334333222 2689999 89999999999888654
No 64
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.32 E-value=1.1e-12 Score=131.68 Aligned_cols=164 Identities=15% Similarity=0.140 Sum_probs=101.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcc
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKT 304 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~ 304 (520)
|.+|+|.|+|||||||+|+.|++++.|+.+++.+ .+| ......+. |.. ..+...++..+.+++.+++...+.
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D-~~r---~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~l~-- 73 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD-DYR---QSIMAHEE-RDE-YKYTKKKEGIVTGMQFDTAKSILY-- 73 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH-HHH---HHHTTSCC-CC----CCHHHHHHHHHHHHHHHHHHTT--
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc-HHH---HHhccCCc-ccc-cccchhhhhHHHHHHHHHHHHHHh--
Confidence 4689999999999999999999975599999998 555 22221111 110 111111222233444445554442
Q ss_pred ccCCCcEEEEeCCCCCHHHHHHHHhhc---CCCCCEEEecCChhhhh-----ccCCCCCHHHHHHHHHHHHHHhHHHHHH
Q psy11031 305 KYTEADGIVIDGFPREMSQLIDFENKY---QIHPPMILIDCSKLVLH-----KGQIDNSVSAFRRRLELFRERTLPMLRA 376 (520)
Q Consensus 305 ~~~~~~G~ILDGFPrt~~Qae~l~~~~---~~p~~VI~Ld~~~~~~~-----r~R~dD~~e~~~~Rl~~f~~~~~~l~~~ 376 (520)
....+.+||+||++.+..+.+.+.+.. +.+..+|+|+|+.+.+. |.......+.++++++.|....... .|
T Consensus 74 ~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~~~e~i~~~~~~~~~~~~~~-~~ 152 (301)
T 1ltq_A 74 GGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYLGLP-VY 152 (301)
T ss_dssp SCTTCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHHHTCC-CC
T ss_pred hccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhccCCCCCHHHHHHHHHHHhcccCCc-ce
Confidence 114578999999999988877776432 23346899999987642 2223457888999998887654321 01
Q ss_pred -hhh-CCCEEEEECCCCHHHHHH
Q psy11031 377 -MDV-ETRLTIVDGDTQLPQVRE 397 (520)
Q Consensus 377 -y~~-~~~l~~IDa~~~~e~V~~ 397 (520)
+.. ....+.+|.+.+++++..
T Consensus 153 ~~~~~~~~~i~iD~dgtl~~~~~ 175 (301)
T 1ltq_A 153 NGTPGKPKAVIFDVDGTLAKMNG 175 (301)
T ss_dssp CCCTTSCEEEEEETBTTTBCCSS
T ss_pred eccccccceEEEeCCCCcccccC
Confidence 111 224566888877555433
No 65
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.31 E-value=3.6e-11 Score=109.66 Aligned_cols=145 Identities=13% Similarity=0.163 Sum_probs=93.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhccc
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTK 305 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~ 305 (520)
.+|+|+|+|||||||+|+.|++++ |+.+++.+.+.. ... .+..++ +. ...+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l-~~~~i~~d~~~~---~~~--------~~~~~~------------~~-~~~l~--- 53 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL-KYPIIKGSSFEL---AKS--------GNEKLF------------EH-FNKLA--- 53 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH-CCCEEECCCHHH---HTT--------CHHHHH------------HH-HHHHT---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-CCeeecCccccc---chh--------HHHHHH------------HH-HHHHH---
Confidence 379999999999999999999997 999999988776 221 011111 01 01122
Q ss_pred cCCCcEEEEeCCC---------------CCHHHHHHHHhhcCCCCCEEEecCChhhhh-----ccCCCCCHHHHHHHHHH
Q psy11031 306 YTEADGIVIDGFP---------------REMSQLIDFENKYQIHPPMILIDCSKLVLH-----KGQIDNSVSAFRRRLEL 365 (520)
Q Consensus 306 ~~~~~G~ILDGFP---------------rt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-----r~R~dD~~e~~~~Rl~~ 365 (520)
.+..+|+|.|. ....+...+...+..++.+|||+++.+.+. |+|.....+.+++..+.
T Consensus 54 --~~~~vi~dr~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~r~~~~~~~~~~~~~~ 131 (173)
T 3kb2_A 54 --DEDNVIIDRFVYSNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRGDEYIEGKDIDSILEL 131 (173)
T ss_dssp --TCCSEEEESCHHHHHHHTTTBTTCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHSCSCCCHHHHHHHHHH
T ss_pred --hCCCeEEeeeecchHHHHHHHHHhhHhhHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhhHHHHHHHH
Confidence 24456666331 245566777776667788999999987542 33443343333333333
Q ss_pred HHHHhHHHHHHhhhCCCEEEEECC-CCHHHHHHHHHHHHHHH
Q psy11031 366 FRERTLPMLRAMDVETRLTIVDGD-TQLPQVREEFERVLKKI 406 (520)
Q Consensus 366 f~~~~~~l~~~y~~~~~l~~IDa~-~~~e~V~~~I~~~I~~~ 406 (520)
| ......|. ...++||++ .++++|.++|...+...
T Consensus 132 ~----~~~~~~~~--~~~~~id~~~~~~~ev~~~I~~~~~~~ 167 (173)
T 3kb2_A 132 Y----REVMSNAG--LHTYSWDTGQWSSDEIAKDIIFLVELE 167 (173)
T ss_dssp H----HHHHHTCS--SCEEEEETTTSCHHHHHHHHHHHHHHG
T ss_pred H----HHHHhhcC--CCEEEEECCCCCHHHHHHHHHHHHhCC
Confidence 3 33445554 357889999 59999999998887663
No 66
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.27 E-value=2.6e-11 Score=112.66 Aligned_cols=162 Identities=14% Similarity=0.114 Sum_probs=95.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh-cCCccchHHHHHHHHHHHhc
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS-AGDFVNRDVVLDIVYAEMKK 303 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~-~G~~vPd~lv~~ll~~~l~~ 303 (520)
++.|+|+|+|||||||+|+.|++++ |+.+++.+++++ +.. +.. +.+.+. .|+..-.++..+++.....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l-~~~~i~~d~~~~---~~~--g~~----~~~~~~~~g~~~~~~~~~~~~~~~~~- 73 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT-KRILYDSDKEIE---KRT--GAD----IAWIFEMEGEAGFRRREREMIEALCK- 73 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH-CCCEEEHHHHHH---HHH--TSC----HHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh-CCCEEEChHHHH---HHc--CCC----hhhHHHHhCHHHHHHHHHHHHHHHHh-
Confidence 5689999999999999999999997 999999999987 322 112 222221 1221111233333333222
Q ss_pred cccCCCcEEEEeC--CCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-c-------cCCCCCHHHHHHHHHHHHHHhHHH
Q psy11031 304 TKYTEADGIVIDG--FPREMSQLIDFENKYQIHPPMILIDCSKLVLH-K-------GQIDNSVSAFRRRLELFRERTLPM 373 (520)
Q Consensus 304 ~~~~~~~G~ILDG--FPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r-------~R~dD~~e~~~~Rl~~f~~~~~~l 373 (520)
....+|..| .+.+....+.+... ..+|||+|+.+.+. | .|+.........+++.......++
T Consensus 74 ----~~~~vi~~gg~~~~~~~~~~~l~~~----~~vi~L~~~~e~l~~Rl~~~~~~~rp~~~~~~~~~~l~~~~~~r~~~ 145 (185)
T 3trf_A 74 ----LDNIILATGGGVVLDEKNRQQISET----GVVIYLTASIDTQLKRIGQKGEMRRPLFIKNNSKEKLQQLNEIRKPL 145 (185)
T ss_dssp ----SSSCEEECCTTGGGSHHHHHHHHHH----EEEEEEECCHHHHHHHHHCCTTCSSCCCCCHHHHHHHHHHHHHHHHH
T ss_pred ----cCCcEEecCCceecCHHHHHHHHhC----CcEEEEECCHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 123344444 56666666666553 26899999987532 1 233333333344555444444444
Q ss_pred HHHhhhCCCEEEEECCC-CHHHHHHHHHHHHHHHHHH
Q psy11031 374 LRAMDVETRLTIVDGDT-QLPQVREEFERVLKKIIDD 409 (520)
Q Consensus 374 ~~~y~~~~~l~~IDa~~-~~e~V~~~I~~~I~~~i~~ 409 (520)
...+. . ++||++. +++++.+.|.+.|...+..
T Consensus 146 y~~~a---d-~~Idt~~~~~~e~~~~I~~~l~~~~~~ 178 (185)
T 3trf_A 146 YQAMA---D-LVYPTDDLNPRQLATQILVDIKQTYSD 178 (185)
T ss_dssp HHHHC---S-EEEECTTCCHHHHHHHHHHHSCC----
T ss_pred HhhcC---C-EEEECCCCCHHHHHHHHHHHHHHHhhh
Confidence 33222 2 5689887 8999999999888776654
No 67
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.27 E-value=2.2e-11 Score=113.46 Aligned_cols=168 Identities=12% Similarity=0.052 Sum_probs=87.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhc
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKK 303 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~ 303 (520)
.+.+|+|+|+|||||||+|+.|++++ |+.+++.+.+.. .........+......+.. .--+.+.+.+...+.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l-~~~~i~~D~~~~---~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~- 75 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL-RLPLLSKDAFKE---VMFDGLGWSDREWSRRVGA---TAIMMLYHTAATILQ- 75 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH-TCCEEEHHHHHH---HHHHHHCCCSHHHHHHHHH---HHHHHHHHHHHHHHH-
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc-CCeEecHHHHHH---HHHHhcCccchHHHHHhhH---HHHHHHHHHHHHHHh-
Confidence 46899999999999999999999997 999999866544 1111000000000000000 000111222233333
Q ss_pred cccCCCcEEEEeCCCCCHHH---HHHHHhhcCCCCCEEEecCChhhhh-----ccCCCCCH-HHHHHHHHHHHH--HhHH
Q psy11031 304 TKYTEADGIVIDGFPREMSQ---LIDFENKYQIHPPMILIDCSKLVLH-----KGQIDNSV-SAFRRRLELFRE--RTLP 372 (520)
Q Consensus 304 ~~~~~~~G~ILDGFPrt~~Q---ae~l~~~~~~p~~VI~Ld~~~~~~~-----r~R~dD~~-e~~~~Rl~~f~~--~~~~ 372 (520)
.+.++|+||+++...+ ...+......+..+|+|+|+.+.+. |++..+.. .... ..|.. ....
T Consensus 76 ----~g~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~r~~~~~~---~~~~~~~~~~~ 148 (193)
T 2rhm_A 76 ----SGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIAQGARHPGHCD---DRSPADLELVR 148 (193)
T ss_dssp ----TTCCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHHTTCC-----------CHHHHHHHH
T ss_pred ----CCCeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcCccccCccccc---CccCcchhhHH
Confidence 4678999999843222 2224444445567999999987642 21111111 0000 11111 0111
Q ss_pred HHH----HhhhCCCEEEEECCCCHHHHHHHHHHHHHHHH
Q psy11031 373 MLR----AMDVETRLTIVDGDTQLPQVREEFERVLKKII 407 (520)
Q Consensus 373 l~~----~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i 407 (520)
+.+ +|. ....++||++...+++.++|...|...+
T Consensus 149 ~~~~~~~~~~-~~~~~~Idt~~~~~~~~~~i~~~i~~~l 186 (193)
T 2rhm_A 149 SRGDIPPLPL-GGPLLTVDTTFPEQIDMNAIVQWVRQHL 186 (193)
T ss_dssp HSCCCCCCCC-CSCEEEEECSSGGGCCHHHHHHHHHHHH
T ss_pred HHhcCCCccC-CCCEEEEeCCCCcccCHHHHHHHHHHHH
Confidence 111 221 1357889999876666666666665544
No 68
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.25 E-value=4.9e-11 Score=109.26 Aligned_cols=153 Identities=8% Similarity=0.065 Sum_probs=92.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh-cCCccchHHHHHHHHHHHhcc
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS-AGDFVNRDVVLDIVYAEMKKT 304 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~-~G~~vPd~lv~~ll~~~l~~~ 304 (520)
++|+|.|+|||||||+|+.|++++ |+.+++.+++++ .. .+.... +++. .|... ...+....+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l-g~~~id~d~~~~---~~--~g~~~~----~~~~~~~~~~----~~~~~~~~~~-- 66 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL-GYEFVDTDIFMQ---HT--SGMTVA----DVVAAEGWPG----FRRRESEALQ-- 66 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH-TCEEEEHHHHHH---HH--HCSCHH----HHHHHHHHHH----HHHHHHHHHH--
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh-CCcEEcccHHHH---HH--hCCCHH----HHHHHcCHHH----HHHHHHHHHH--
Confidence 469999999999999999999997 999999999988 33 222222 2221 12211 1122112222
Q ss_pred ccCCCcEEEEe-C--CCCCHHHHHHHHhhcCCCCCEEEecCChhhhh---c--c----CCCCCHHHHHHHHHHHHHHhHH
Q psy11031 305 KYTEADGIVID-G--FPREMSQLIDFENKYQIHPPMILIDCSKLVLH---K--G----QIDNSVSAFRRRLELFRERTLP 372 (520)
Q Consensus 305 ~~~~~~G~ILD-G--FPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~---r--~----R~dD~~e~~~~Rl~~f~~~~~~ 372 (520)
... ..++||+ | ++........|.. ++.+|+|+||.+.+. . . |+....+...+++..+.....+
T Consensus 67 ~l~-~~~~vi~~g~~~~~~~~~~~~l~~----~~~~i~l~~~~e~~~~R~~~~~r~~~r~~~~~~~~~~~~~~~~~~~~~ 141 (173)
T 1e6c_A 67 AVA-TPNRVVATGGGMVLLEQNRQFMRA----HGTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREA 141 (173)
T ss_dssp HHC-CSSEEEECCTTGGGSHHHHHHHHH----HSEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHH
T ss_pred Hhh-cCCeEEECCCcEEeCHHHHHHHHc----CCeEEEEECCHHHHHHHHhhccCCCCCCcCCCCCHHHHHHHHHHHHHH
Confidence 222 3456665 5 4444444555543 357999999987531 1 2 2333334555666665544433
Q ss_pred HHHHhhhCCCEEEEECC-CCHHHHHHHHHHHHH
Q psy11031 373 MLRAMDVETRLTIVDGD-TQLPQVREEFERVLK 404 (520)
Q Consensus 373 l~~~y~~~~~l~~IDa~-~~~e~V~~~I~~~I~ 404 (520)
+|... .++||++ .+++++.+.|...+.
T Consensus 142 ---~~~~~--~~~Id~~~~~~~~~~~~i~~~l~ 169 (173)
T 1e6c_A 142 ---LYQDV--AHYVVDATQPPAAIVCELMQTMR 169 (173)
T ss_dssp ---HHHHH--CSEEEETTSCHHHHHHHHHHHTT
T ss_pred ---HHHhC--cEEEECCCCCHHHHHHHHHHHhc
Confidence 34432 2478988 899999998877653
No 69
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.24 E-value=7.1e-11 Score=112.93 Aligned_cols=168 Identities=14% Similarity=0.192 Sum_probs=98.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhh-----h-cCCccch-------
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSV-----S-AGDFVNR------- 290 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l-----~-~G~~vPd------- 290 (520)
.+.+|+|.|++||||||+|+.|++ + |+.+++.+++.+ .....+......+.+.+ . .|..-..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-l-g~~~id~D~~~~---~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f 77 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-L-GINVIDADIIAR---QVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIF 77 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-T-TCEEEEHHHHHH---HTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-c-CCEEEEccHHHH---HHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHh
Confidence 467899999999999999999998 6 999999999998 44333333333333322 1 1211111
Q ss_pred ----------HHHHHHHHHHHhccccCC-CcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhc---cCCCCCH
Q psy11031 291 ----------DVVLDIVYAEMKKTKYTE-ADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHK---GQIDNSV 356 (520)
Q Consensus 291 ----------~lv~~ll~~~l~~~~~~~-~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r---~R~dD~~ 356 (520)
.++...+...+.. ..+. ..++++.++|...+.. +. ..++.+|||+|+.+.+.+ .|...+.
T Consensus 78 ~~~~~~~~l~~~~~p~v~~~~~~-~~~~~~~~~vi~~~~~l~~~~--~~---~~~d~vi~l~~~~e~~~~Rl~~R~~~~~ 151 (218)
T 1vht_A 78 ANPEEKNWLNALLHPLIQQETQH-QIQQATSPYVLWVVPLLVENS--LY---KKANRVLVVDVSPETQLKRTMQRDDVTR 151 (218)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHH-HHHHCCSSEEEEECTTTTTTT--GG---GGCSEEEEEECCHHHHHHHHHHHHTCCH
T ss_pred CCHHHHHHHHHhHCHHHHHHHHH-HHHhcCCCEEEEEeeeeeccC--cc---ccCCEEEEEECCHHHHHHHHHHcCCCCH
Confidence 1111122111110 0011 2345555556543322 21 235789999999976432 2433455
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHH
Q psy11031 357 SAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIID 408 (520)
Q Consensus 357 e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~ 408 (520)
+.+.+|+... .+...++...+ ++||++.+++++.+.|...+...+.
T Consensus 152 ~~~~~~~~~~----~~~~~~~~~ad--~vId~~~~~~~~~~~I~~~l~~~~~ 197 (218)
T 1vht_A 152 EHVEQILAAQ----ATREARLAVAD--DVIDNNGAPDAIASDVARLHAHYLQ 197 (218)
T ss_dssp HHHHHHHHHS----CCHHHHHHHCS--EEEECSSCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc----CChHHHHHhCC--EEEECCCCHHHHHHHHHHHHHHHHH
Confidence 6666665531 22233333333 5789999999999999998877654
No 70
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.24 E-value=1.4e-10 Score=108.43 Aligned_cols=159 Identities=16% Similarity=0.244 Sum_probs=93.9
Q ss_pred cCCCCCeEEEEEcCCCCChhHHHHHHHhh-CCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCcc---chHHHHH
Q psy11031 220 VERNTPLVVWVVGGPGSSKSEMCQKVLQD-YPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFV---NRDVVLD 295 (520)
Q Consensus 220 ~~~~~p~~I~vlG~PGSGKsT~a~~La~k-~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~v---Pd~lv~~ 295 (520)
+...++++|+|+|+|||||||+|+.|+++ + |+.+++++++++ +.. .....++.... ..+ +++.+.+
T Consensus 5 ~~~~~~~~I~l~G~~GsGKSTv~~~La~~l~-g~~~id~d~~~~---~~~-~~~~~~~~~~~-----~~~~r~~~~~~~~ 74 (184)
T 1y63_A 5 MEQPKGINILITGTPGTGKTSMAEMIAAELD-GFQHLEVGKLVK---ENH-FYTEYDTELDT-----HIIEEKDEDRLLD 74 (184)
T ss_dssp -CCCSSCEEEEECSTTSSHHHHHHHHHHHST-TEEEEEHHHHHH---HTT-CSCC------C-----CCCCHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCCCCHHHHHHHHHHhcC-CCEEeeHHHHHH---Hhh-hhhhHHHHhhh-----cccCCCCHHHHHH
Confidence 44556789999999999999999999999 6 999999999999 321 11122222111 122 3444455
Q ss_pred HHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhc---cCCCCCHHHHHHHHH-H-HHHHh
Q psy11031 296 IVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHK---GQIDNSVSAFRRRLE-L-FRERT 370 (520)
Q Consensus 296 ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r---~R~dD~~e~~~~Rl~-~-f~~~~ 370 (520)
.+...+. +..|+|+|+..+. .|++. ..+.||+|+|+.+.+.+ .|. .+.+.+..++. + +....
T Consensus 75 ~l~~~~~-----~~g~~vi~~~~~~-----~~~~~--~~~~vi~l~~~~e~~~~Rl~~R~-~~~~~~~~~~~~q~~~~l~ 141 (184)
T 1y63_A 75 FMEPIMV-----SRGNHVVDYHSSE-----LFPER--WFHMVVVLHTSTEVLFERLTKRQ-YSEAKRAENMEAEIQCICE 141 (184)
T ss_dssp HHHHHHT-----SSSEEEEECSCCT-----TSCGG--GCSEEEEEECCHHHHHHHHHHTT-CCHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHh-----ccCCEEEeCchHh-----hhhhc--cCCEEEEEECCHHHHHHHHHhCC-CChhhhHhhHHHHHHHHHH
Confidence 5555443 2458999986432 12221 14579999999976432 232 23444444442 2 33333
Q ss_pred HHHHHHhhhCCCEEEEE-CCCCHHHHHHHHHHHHH
Q psy11031 371 LPMLRAMDVETRLTIVD-GDTQLPQVREEFERVLK 404 (520)
Q Consensus 371 ~~l~~~y~~~~~l~~ID-a~~~~e~V~~~I~~~I~ 404 (520)
......|.. .. +|| .+.+++++.+.+...+.
T Consensus 142 ~~~~~~y~~-~~--vi~~n~~~~~~~~~~v~~i~~ 173 (184)
T 1y63_A 142 EEARDAYED-DI--VLVRENDTLEQMAATVEEIRE 173 (184)
T ss_dssp HHHHHHSCG-GG--EEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHHhcc-Cc--EEECCCCCHHHHHHHHHHHHH
Confidence 444556752 32 345 35789999776665543
No 71
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.24 E-value=2e-10 Score=112.20 Aligned_cols=133 Identities=17% Similarity=0.338 Sum_probs=105.4
Q ss_pred HHHHHHHHccCCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHhh-
Q psy11031 22 KMFNLFVSEEVKDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQID- 100 (520)
Q Consensus 22 ~~l~~~i~~G~~~g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl~- 100 (520)
..++.++.+|. ++|+.++.+.+...+... ...+|++||||++..|+..+. ....++.+|+|++|.+++.+|+.
T Consensus 74 ~~i~~~~~~~~----~~~~~~v~~~l~~~l~~~-~~~~~il~g~~~~~~~~~~l~-~~~~~~~vi~L~~~~~~~l~r~~~ 147 (246)
T 2bbw_A 74 EMAKQYIEKSL----LVPDHVITRLMMSELENR-RGQHWLLDGFPRTLGQAEALD-KICEVDLVISLNIPFETLKDRLSR 147 (246)
T ss_dssp HHHHHHHHTTC----CCCHHHHHHHHHHHHHTC-TTSCEEEESCCCSHHHHHHHH-TTCCCCEEEEEECCHHHHHHHHHT
T ss_pred HHHHHHHHcCC----CCCHHHHHHHHHHHHHhc-CCCeEEEECCCCCHHHHHHHH-hhcCCCEEEEEECCHHHHHHHHHc
Confidence 33344444555 999999999998877642 467899999999998885544 34578999999999999998873
Q ss_pred hC--ccCCc-------------------------c--chHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHH
Q psy11031 101 YG--AKLGH-------------------------V--ILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYA 151 (520)
Q Consensus 101 rg--~~~~r-------------------------~--d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~ 151 (520)
+. ..++| . ..+.+.+|+..|.++..++++||.+.++++.|||+++ ++|++
T Consensus 148 r~~~~lSgrv~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~~~v~~~~~~~~~~~~id~~~~-~~v~~ 226 (246)
T 2bbw_A 148 RWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTET-NKIWP 226 (246)
T ss_dssp EEEETTTTEEEETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHH
T ss_pred CCCcCCCCCccccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHHhHHHHHHHHhhcCcEEEECCCCc-HHHHH
Confidence 21 11222 1 1567899999999999999999999999999999998 99999
Q ss_pred HHHHHHHHHh
Q psy11031 152 DFRTAVLKIL 161 (520)
Q Consensus 152 ~i~~~l~~~~ 161 (520)
+|.++|...+
T Consensus 227 ~i~~~l~~~~ 236 (246)
T 2bbw_A 227 YVYTLFSNKI 236 (246)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHhhC
Confidence 9999998755
No 72
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.23 E-value=2.1e-11 Score=113.34 Aligned_cols=153 Identities=14% Similarity=0.104 Sum_probs=89.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhh-hcCCccchHHHHHHHHHHHhcc
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSV-SAGDFVNRDVVLDIVYAEMKKT 304 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l-~~G~~vPd~lv~~ll~~~l~~~ 304 (520)
++|+|+|+|||||||+|+.|++++ |+.+++.+++++ +.. +.. +.+++ ..|+....+...+++...+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l-g~~~id~D~~~~---~~~--g~~----~~~~~~~~g~~~~~~~~~~~~~~~~~-- 70 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL-GVGLLDTDVAIE---QRT--GRS----IADIFATDGEQEFRRIEEDVVRAALA-- 70 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH-TCCEEEHHHHHH---HHH--SSC----HHHHHHHHCHHHHHHHHHHHHHHHHH--
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc-CCCEEeCchHHH---HHc--CCC----HHHHHHHhChHHHHHHHHHHHHHHHh--
Confidence 569999999999999999999997 999999999988 332 211 22333 24544444444444444333
Q ss_pred ccCCCcEEEE-eC--CCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-c--cC---CCCCHHHHHHHHHHHHHHhHHHHH
Q psy11031 305 KYTEADGIVI-DG--FPREMSQLIDFENKYQIHPPMILIDCSKLVLH-K--GQ---IDNSVSAFRRRLELFRERTLPMLR 375 (520)
Q Consensus 305 ~~~~~~G~IL-DG--FPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r--~R---~dD~~e~~~~Rl~~f~~~~~~l~~ 375 (520)
...||+ +| +..+......|. .+.+|+|+||.+.+. | .| +....+....++..+..... .
T Consensus 71 ----~~~~vi~~g~~~v~~~~~~~~l~-----~~~vV~L~~~~e~~~~Rl~~r~~r~~~~~~~~~~~i~~~~~~r~---~ 138 (184)
T 2iyv_A 71 ----DHDGVLSLGGGAVTSPGVRAALA-----GHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRA---P 138 (184)
T ss_dssp ----HCCSEEECCTTGGGSHHHHHHHT-----TSCEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHHHHHHHHH---H
T ss_pred ----cCCeEEecCCcEEcCHHHHHHHc-----CCeEEEEeCCHHHHHHHHhCCCCCCCccCCCHHHHHHHHHHHHH---H
Confidence 123444 34 333322333332 457999999998643 1 12 21111112334444433323 3
Q ss_pred HhhhCCCEEEEECC-CCHHHHHHHHHHHH
Q psy11031 376 AMDVETRLTIVDGD-TQLPQVREEFERVL 403 (520)
Q Consensus 376 ~y~~~~~l~~IDa~-~~~e~V~~~I~~~I 403 (520)
+|..... ++||++ .+++++.+.|...|
T Consensus 139 ~~~~~~~-~~Idt~~~s~ee~~~~I~~~l 166 (184)
T 2iyv_A 139 LYRRVAT-MRVDTNRRNPGAVVRHILSRL 166 (184)
T ss_dssp HHHHHCS-EEEECSSSCHHHHHHHHHTTS
T ss_pred HHhccCC-EEEECCCCCHHHHHHHHHHHH
Confidence 4543222 578998 79999888886654
No 73
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.23 E-value=1.8e-10 Score=108.94 Aligned_cols=163 Identities=12% Similarity=0.229 Sum_probs=94.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhc------CCc---------c--
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSA------GDF---------V-- 288 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~------G~~---------v-- 288 (520)
.+|.|+|++||||||+++.|++ + |+.+++.+++.+ .....+......+...+.. |.. .
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-l-g~~~id~d~~~~---~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~ 77 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-L-GVPLVDADVVAR---EVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNH 77 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-T-TCCEEEHHHHHH---HTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTC
T ss_pred cEEEEECCCCCCHHHHHHHHHH-C-CCcccchHHHHH---HHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCC
Confidence 5799999999999999999987 6 999999999988 4332332221222221110 100 0
Q ss_pred c------hHHHHHHHH----HHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhc---cCCCCC
Q psy11031 289 N------RDVVLDIVY----AEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHK---GQIDNS 355 (520)
Q Consensus 289 P------d~lv~~ll~----~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r---~R~dD~ 355 (520)
| ..++...+. +.+. .. .+.++|+|| |.-.+. . + ....+.+|+|+|+.+.+.+ .|...+
T Consensus 78 ~~~~~~l~~~~~p~v~~~~~~~~~--~~-~~~~vv~~~-~~l~e~-~-~---~~~~d~vi~l~~~~e~~~~Rl~~R~~~~ 148 (206)
T 1jjv_A 78 DEDKLWLNNLLHPAIRERMKQKLA--EQ-TAPYTLFVV-PLLIEN-K-L---TALCDRILVVDVSPQTQLARSAQRDNNN 148 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--TC-CSSEEEEEC-TTTTTT-T-C---GGGCSEEEEEECCHHHHHHHHC-----C
T ss_pred HHHHHHHHhccCHHHHHHHHHHHH--hc-CCCEEEEEe-chhhhc-C-c---HhhCCEEEEEECCHHHHHHHHHHcCCCC
Confidence 0 111122222 2232 11 245789998 432111 1 1 1234679999999986432 343345
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHH----HHHHHHHHHHHHHHH
Q psy11031 356 VSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLP----QVREEFERVLKKIID 408 (520)
Q Consensus 356 ~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e----~V~~~I~~~I~~~i~ 408 (520)
.+.+.+|+.. + .+....|...+ ++||++.+++ ++.++|...+...+.
T Consensus 149 ~e~~~~r~~~---q-~~~~~~~~~ad--~vIdn~~~~~~~~~~~~~~i~~~~~~~~~ 199 (206)
T 1jjv_A 149 FEQIQRIMNS---Q-VSQQERLKWAD--DVINNDAELAQNLPHLQQKVLELHQFYLQ 199 (206)
T ss_dssp HHHHHHHHHH---S-CCHHHHHHHCS--EEEECCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh---c-CChHHHHHhCC--EEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 6777777664 1 23445555444 5689988999 888888888765443
No 74
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.22 E-value=8.2e-11 Score=107.36 Aligned_cols=149 Identities=15% Similarity=0.226 Sum_probs=90.3
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh-cCCccchHHHHHHHHHHHhccc
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS-AGDFVNRDVVLDIVYAEMKKTK 305 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~-~G~~vPd~lv~~ll~~~l~~~~ 305 (520)
+|+|.|+|||||||+|+.|++++ |+.+++++++.+ ... |..+++++. .|......+..+++ ..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l-~~~~i~~d~~~~---~~~------g~~~~~~~~~~~~~~~~~~~~~~l-~~l~--- 67 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL-NIPFYDVDEEVQ---KRE------GLSIPQIFEKKGEAYFRKLEFEVL-KDLS--- 67 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH-TCCEEEHHHHHH---HHH------TSCHHHHHHHSCHHHHHHHHHHHH-HHHT---
T ss_pred eEEEECCCCCCHHHHHHHHHHHh-CCCEEECcHHHH---HHc------CCCHHHHHHHhChHHHHHHHHHHH-HHHh---
Confidence 69999999999999999999997 999999999988 322 233444432 23322222222222 1222
Q ss_pred cCCCcEEEEe-C--CCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-c--c---CCCC--CHHHHHHHHHHHHHHhHHHH
Q psy11031 306 YTEADGIVID-G--FPREMSQLIDFENKYQIHPPMILIDCSKLVLH-K--G---QIDN--SVSAFRRRLELFRERTLPML 374 (520)
Q Consensus 306 ~~~~~G~ILD-G--FPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r--~---R~dD--~~e~~~~Rl~~f~~~~~~l~ 374 (520)
....|||+ | .+....+...|.. ++.+|+|+||.+.+. | . |+.. ..+.++.++. + ..
T Consensus 68 --~~~~~Vi~~g~~~~~~~~~~~~l~~----~~~~i~l~~~~e~~~~R~~~r~~r~~~~~~~~~i~~~~~---~----~~ 134 (168)
T 2pt5_A 68 --EKENVVISTGGGLGANEEALNFMKS----RGTTVFIDIPFEVFLERCKDSKERPLLKRPLDEIKNLFE---E----RR 134 (168)
T ss_dssp --TSSSEEEECCHHHHTCHHHHHHHHT----TSEEEEEECCHHHHHHHCBCTTCCBGGGSCGGGTHHHHH---H----HH
T ss_pred --ccCCeEEECCCCEeCCHHHHHHHHc----CCEEEEEECCHHHHHHHHhCCCCCCCCcchHHHHHHHHH---H----HH
Confidence 24467775 4 3444445555542 468999999997642 2 2 2221 1222333322 1 12
Q ss_pred HHhhhCCCEEEEECCCCHHHHHHHHHHHHH
Q psy11031 375 RAMDVETRLTIVDGDTQLPQVREEFERVLK 404 (520)
Q Consensus 375 ~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~ 404 (520)
.+|.. ..++. |++.+++++.+.|.+.+.
T Consensus 135 ~~~~~-~~~~i-~~~~~~~~~~~~i~~~l~ 162 (168)
T 2pt5_A 135 KIYSK-ADIKV-KGEKPPEEVVKEILLSLE 162 (168)
T ss_dssp HHHTT-SSEEE-ECSSCHHHHHHHHHHHHH
T ss_pred HHHHh-CCEEE-CCCCCHHHHHHHHHHHHH
Confidence 34554 44665 888999999999887764
No 75
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.21 E-value=2.3e-11 Score=111.48 Aligned_cols=146 Identities=11% Similarity=0.069 Sum_probs=86.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh-cCCccchHHHHHHHHHHHhcc
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS-AGDFVNRDVVLDIVYAEMKKT 304 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~-~G~~vPd~lv~~ll~~~l~~~ 304 (520)
..|+|.|+|||||||+|+.|++++ |+.+++++++++ +.. |..+++++. .|+....++..+++.....
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l-g~~~id~D~~~~---~~~------g~~~~~~~~~~g~~~~~~~~~~~l~~~~~-- 75 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL-KLEVLDTDMIIS---ERV------GLSVREIFEELGEDNFRMFEKNLIDELKT-- 75 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH-TCCEEEHHHHHH---HHH------TSCHHHHHHHTCHHHHHHHHHHHHHHHHT--
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh-CCCEEEChHHHH---HHh------CCCHHHHHHHhCHHHHHHHHHHHHHHHHh--
Confidence 579999999999999999999997 999999999988 332 222344443 3543333333334433222
Q ss_pred ccCCCcEE-EEe---CCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-c--c-----CCCCC-HHHHHHHHHHHHHHhH
Q psy11031 305 KYTEADGI-VID---GFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-K--G-----QIDNS-VSAFRRRLELFRERTL 371 (520)
Q Consensus 305 ~~~~~~G~-ILD---GFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r--~-----R~dD~-~e~~~~Rl~~f~~~~~ 371 (520)
...+ |+. |++.. +. +..++.+|||+||.+.+. | . |.... .+.++ .......
T Consensus 76 ----~~~~~Vi~~g~g~~~~-~~-------l~~~~~vi~l~~~~e~~~~Rl~~r~~~~r~~~~~~~~~~----~~~~~r~ 139 (168)
T 1zuh_A 76 ----LKTPHVISTGGGIVMH-EN-------LKGLGTTFYLKMDFETLIKRLNQKEREKRPLLNNLTQAK----ELFEKRQ 139 (168)
T ss_dssp ----CSSCCEEECCGGGGGC-GG-------GTTSEEEEEEECCHHHHHHHHCC--------CCTTHHHH----HHHHHHH
T ss_pred ----cCCCEEEECCCCEech-hH-------HhcCCEEEEEECCHHHHHHHHhccCCCCCCCccCHHHHH----HHHHHHH
Confidence 2234 554 36655 22 233567999999998642 1 2 22222 22222 2222222
Q ss_pred HHHHHhhhCCCEEEEECCCCHHHHHHHHHHHH
Q psy11031 372 PMLRAMDVETRLTIVDGDTQLPQVREEFERVL 403 (520)
Q Consensus 372 ~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I 403 (520)
.+|.... -++||++.+++++.+.|...|
T Consensus 140 ---~~~~~~a-~~~Id~~~~~e~~~~~I~~~l 167 (168)
T 1zuh_A 140 ---ALYEKNA-SFIIDARGGLNNSLKQVLQFI 167 (168)
T ss_dssp ---HHHHHTC-SEEEEGGGCHHHHHHHHHHC-
T ss_pred ---HHHHHHC-CEEEECCCCHHHHHHHHHHHh
Confidence 3444322 246898889999999887654
No 76
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.20 E-value=1.5e-11 Score=113.64 Aligned_cols=147 Identities=13% Similarity=0.062 Sum_probs=87.3
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh-cCCccchHHHHHHHHHHHhccc
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS-AGDFVNRDVVLDIVYAEMKKTK 305 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~-~G~~vPd~lv~~ll~~~l~~~~ 305 (520)
+|+|+|+|||||||+|+.|++++ |+.+++.+++++ ... |..+.+++. .|.....+....++. .+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l-~~~~~d~d~~~~---~~~------g~~~~~~~~~~g~~~~~~~~~~~~~-~l~--- 71 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL-DLVFLDSDFLIE---QKF------NQKVSEIFEQKRENFFREQEQKMAD-FFS--- 71 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH-TCEEEEHHHHHH---HHH------TSCHHHHHHHHCHHHHHHHHHHHHH-HHT---
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc-CCCEEcccHHHH---HHc------CCCHHHHHHHcCHHHHHHHHHHHHH-HHH---
Confidence 69999999999999999999997 999999999988 321 112222232 343322333333332 222
Q ss_pred cCCCcEEEEe-CCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhc--------cCCCCC-HHHHHHHHHHHHHHhHHHHH
Q psy11031 306 YTEADGIVID-GFPREMSQLIDFENKYQIHPPMILIDCSKLVLHK--------GQIDNS-VSAFRRRLELFRERTLPMLR 375 (520)
Q Consensus 306 ~~~~~G~ILD-GFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r--------~R~dD~-~e~~~~Rl~~f~~~~~~l~~ 375 (520)
...++||+ |++.-.. .. |. ..+.+|||+++.+.+.+ .|+... .+.++ . .......
T Consensus 72 --~~~~~vi~~g~~~~~~-~~-l~----~~~~~i~l~~~~e~~~~R~~~r~~~~r~~~~~~~~i~----~---~~~~r~~ 136 (175)
T 1via_A 72 --SCEKACIATGGGFVNV-SN-LE----KAGFCIYLKADFEYLKKRLDKDEISKRPLFYDEIKAK----K---LYNERLS 136 (175)
T ss_dssp --TCCSEEEECCTTGGGS-TT-GG----GGCEEEEEECCHHHHTTCCCGGGTTTSCTTCCHHHHH----H---HHHHHHH
T ss_pred --ccCCEEEECCCCEehh-hH-Hh----cCCEEEEEeCCHHHHHHHHhcccCCCCCCcccHHHHH----H---HHHHHHH
Confidence 23467777 7543222 11 22 23579999999876432 222222 22222 2 2222234
Q ss_pred HhhhCCCEEEEECC-CCHHHHHHHHHHHH
Q psy11031 376 AMDVETRLTIVDGD-TQLPQVREEFERVL 403 (520)
Q Consensus 376 ~y~~~~~l~~IDa~-~~~e~V~~~I~~~I 403 (520)
+|.... .++||++ .+++++.+.|...|
T Consensus 137 ~y~~~~-~~~Idt~~~~~eev~~~I~~~l 164 (175)
T 1via_A 137 KYEQKA-NFILNIENKNIDELLSEIKKVI 164 (175)
T ss_dssp HHHHHC-SEEEECTTCCHHHHHHHHHHHH
T ss_pred HHHhcC-CEEEECCCCCHHHHHHHHHHHH
Confidence 554322 3679999 79999998887765
No 77
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.19 E-value=1.9e-10 Score=115.24 Aligned_cols=172 Identities=14% Similarity=0.100 Sum_probs=101.4
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh------cCCccch-----
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS------AGDFVNR----- 290 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~------~G~~vPd----- 290 (520)
+..+.+|+|.|++||||||+|+.|+ ++ |+.+|+++++.+ .....++.....+.+.+. .|..-..
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La-~l-g~~~id~D~~~~---~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~ 146 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLK-NL-GAYIIDSDHLGH---RAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSR 146 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHH-HH-TCEEEEHHHHHH---HHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH-HC-CCcEEehhHHHH---HHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHH
Confidence 4567899999999999999999999 56 999999999988 443333333333222211 1211000
Q ss_pred ------------HHH----HHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhc---cC
Q psy11031 291 ------------DVV----LDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHK---GQ 351 (520)
Q Consensus 291 ------------~lv----~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r---~R 351 (520)
.++ ...+..++..........||+||.... +. .+ ...++.+|||+|+.+.+.+ .|
T Consensus 147 vf~~~~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~--~~-~~---~~~~d~vI~l~a~~ev~~~Rl~~R 220 (281)
T 2f6r_A 147 VFGNKKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLL--EA-GW---QSMVHEVWTVVIPETEAVRRIVER 220 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTT--TT-TG---GGGCSEEEEEECCHHHHHHHHHHH
T ss_pred HhCCHHHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhh--cc-ch---HHhCCEEEEEcCCHHHHHHHHHHc
Confidence 011 111122222100112457999996321 11 01 1225679999999986432 23
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH
Q psy11031 352 IDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDDL 410 (520)
Q Consensus 352 ~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~~~ 410 (520)
...+.+.+.+|+... .+..+++...+ ++||++.+++++.++|...+...+..+
T Consensus 221 ~g~s~e~~~~ri~~q----~~~~~~~~~AD--~vIdn~~s~eel~~~I~~~l~~l~~~~ 273 (281)
T 2f6r_A 221 DGLSEAAAQSRLQSQ----MSGQQLVEQSN--VVLSTLWESHVTQSQVEKAWNLLQKRL 273 (281)
T ss_dssp HCCCHHHHHHHHHTS----CCHHHHHHTCS--EEEECSSCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHc----CChHhhHhhCC--EEEECCCCHHHHHHHHHHHHHHHHHHH
Confidence 233566666666643 22334443333 468999999999999998887655444
No 78
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.18 E-value=1.2e-10 Score=115.10 Aligned_cols=156 Identities=16% Similarity=0.175 Sum_probs=92.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhh---CCCCeee--ehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHH
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQD---YPNWTQI--SLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVY 298 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k---~~g~~~i--s~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~ 298 (520)
.++.|+|+|+|||||||+|+.|+++ + |+.++ +. |.++ .....-. ..++..........+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~-g~~~i~~~~-D~~~---~~l~~~~----------~~~e~~~~~~~~~~i~ 67 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKN-NIDVIVLGS-DLIR---ESFPVWK----------EKYEEFIKKSTYRLID 67 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEECT-HHHH---TTSSSCC----------GGGHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhC-CCEEEEECc-hHHH---HHHhhhh----------HHHHHHHHHHHHHHHH
Confidence 3678999999999999999999987 6 88777 65 5555 2221101 1111111122233344
Q ss_pred HHHhccccCCCcEEEEeCCCCCHHHHHHHHhh---cCCCCCEEEecCChhhhh-c--cCC-CCCHHHHHHHHHHHHHHhH
Q psy11031 299 AEMKKTKYTEADGIVIDGFPREMSQLIDFENK---YQIHPPMILIDCSKLVLH-K--GQI-DNSVSAFRRRLELFRERTL 371 (520)
Q Consensus 299 ~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~---~~~p~~VI~Ld~~~~~~~-r--~R~-dD~~e~~~~Rl~~f~~~~~ 371 (520)
..+. . ..+|+||.+....+...+... .+.+..+|+|+|+.+.+. | .|. ....+.+++..+.|. .
T Consensus 68 ~~l~-----~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~~~l~~~~~~~e---~ 138 (260)
T 3a4m_A 68 SALK-----N-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGEKIPNEVIKKMYEKFD---E 138 (260)
T ss_dssp HHHT-----T-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTTCSSCHHHHHHHHHHCC---C
T ss_pred HHhh-----C-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCCCCCCHHHHHHHHHHhc---C
Confidence 4333 2 789999988776666655543 344567999999987642 1 232 223444444333332 1
Q ss_pred HHHHHhhhCCCEEEEECCC--CHHHHHHHHHHHHH
Q psy11031 372 PMLRAMDVETRLTIVDGDT--QLPQVREEFERVLK 404 (520)
Q Consensus 372 ~l~~~y~~~~~l~~IDa~~--~~e~V~~~I~~~I~ 404 (520)
+ ...|......++||++. ++++|++.|...+.
T Consensus 139 ~-~~~~~~~~~~~~Id~~~~~~~~ei~~~I~~~l~ 172 (260)
T 3a4m_A 139 P-GKKYKWDEPFLIIDTTKDIDFNEIAKKLIEKSK 172 (260)
T ss_dssp T-TSSCGGGCCSEEEETTSCCCHHHHHHHHHHHHT
T ss_pred c-cccCCCCCCEEEEeCCCCCCHHHHHHHHHhccc
Confidence 1 12232123457899987 78888777766543
No 79
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.15 E-value=4.8e-10 Score=105.00 Aligned_cols=162 Identities=11% Similarity=0.094 Sum_probs=87.0
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcc-c
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKT-K 305 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~-~ 305 (520)
+|+|+|+|||||||+|+.|++++ ++.++... ..+.. .++.++..+...+......++..++... .
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l-~~~~~~e~----------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 67 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL-GYEIFKEP----------VEENP---YFEQYYKDLKKTVFKMQIYMLTARSKQLKQ 67 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH-CCEEECCC----------GGGCT---THHHHTTCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred EEEEECCCccCHHHHHHHHHHhc-CCcEEccc----------ccccH---HHHHHHhCccccchhHHHHHHHHHHHHHHH
Confidence 69999999999999999999997 88766421 00111 1222221111111111122222222210 1
Q ss_pred cCCCcEEEEeCCCCCH-HHHH------------------HHH---hhc-------CCCCCEEEecCChhhhh-----ccC
Q psy11031 306 YTEADGIVIDGFPREM-SQLI------------------DFE---NKY-------QIHPPMILIDCSKLVLH-----KGQ 351 (520)
Q Consensus 306 ~~~~~G~ILDGFPrt~-~Qae------------------~l~---~~~-------~~p~~VI~Ld~~~~~~~-----r~R 351 (520)
.....++|+|+++.+- ..+. .+. ..+ ..++.+|+|+|+.+.+. |+|
T Consensus 68 ~~~~~~vi~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~R~r 147 (205)
T 2jaq_A 68 AKNLENIIFDRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKRGR 147 (205)
T ss_dssp -----CEEEESCTTTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHHHTC
T ss_pred hhccCCEEEEeccchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHHcCC
Confidence 1112359999998752 1110 111 111 34667999999987642 233
Q ss_pred CCCCH--HHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031 352 IDNSV--SAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK 405 (520)
Q Consensus 352 ~dD~~--e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~ 405 (520)
+.... ..+.+++..++. .+.+.|......++||++.++++|.+.|...+..
T Consensus 148 ~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~Id~~~~~~~v~~~I~~~l~~ 200 (205)
T 2jaq_A 148 SEELLIGEEYWETLNKNYE---EFYKQNVYDFPFFVVDAELDVKTQIELIMNKLNS 200 (205)
T ss_dssp HHHHHSCHHHHHHHHHHHH---HHHHHHTTTSCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred hhhhcCcHHHHHHHHHHHH---HHHHHccccCcEEEEECCCCHHHHHHHHHHHHHH
Confidence 21110 133344443333 3455665334578899999999999999887754
No 80
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.14 E-value=8.3e-11 Score=114.27 Aligned_cols=174 Identities=13% Similarity=0.173 Sum_probs=101.0
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhc-ccccCCc------chHHHH--------------h
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFAN-IEDDGEG------LNSRIK--------------S 280 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~-~~~~~t~------~g~~i~--------------~ 280 (520)
...+.+|.|+|++||||||+++.|++++ |+.+++.|++++.... ....+.+ +...+. .
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l-g~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 91 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF-GFTYLDTGAMYRAATYMALKNQLGVEEVEALLALLDQHPISFGRSETGDQL 91 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH-CCEEEEHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHSCCEEEEETTTEEE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc-CCceecCCCeeEcceeeeeccCCCcccHHHHHHHHHhccccccccCCccce
Confidence 4456789999999999999999999997 9999999999982100 0112222 111111 2
Q ss_pred hhhcCCccc----hHHHH-------------HHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCC
Q psy11031 281 SVSAGDFVN----RDVVL-------------DIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCS 343 (520)
Q Consensus 281 ~l~~G~~vP----d~lv~-------------~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~ 343 (520)
++..|+.++ .+.+. +.+...+. ....+.|+|+||+.... ..+...+.+|||+|+
T Consensus 92 i~~~G~~~~r~l~~~~v~~~~~~~~~~~~vr~~~~~~~~--~~~~~~~~v~~g~~~~~-------~~l~~~d~vi~L~a~ 162 (236)
T 1q3t_A 92 VFVGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQ--EIAQQGGIVMDGRDIGT-------VVLPQAELKIFLVAS 162 (236)
T ss_dssp EEETTEEESSSSCSHHHHHHHHHHHTSHHHHHHHHHHHH--HHHTTSCEEEECSSCSS-------SSGGGCSEEEEEECC
T ss_pred EeECCcCchhhhccHHHHHHHHHHccCHHHHHHHHHHHH--HhcccCCEEEECCcchh-------hhccCCCEEEEEECC
Confidence 223455332 21222 12222222 22345689999997641 112234679999999
Q ss_pred hhhhhc-------cCC-CCCHHHHHHHHHH--HHHHhHHHHHHhhhCCCEEEEECC-CCHHHHHHHHHHHHHHH
Q psy11031 344 KLVLHK-------GQI-DNSVSAFRRRLEL--FRERTLPMLRAMDVETRLTIVDGD-TQLPQVREEFERVLKKI 406 (520)
Q Consensus 344 ~~~~~r-------~R~-dD~~e~~~~Rl~~--f~~~~~~l~~~y~~~~~l~~IDa~-~~~e~V~~~I~~~I~~~ 406 (520)
.+.+.+ .|. ..+.+.+.+++.. +......+..+|... ..++||++ .+++++.+.|...+...
T Consensus 163 ~e~~~~R~~~~~~~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~~~~-d~~vId~~~~s~eev~~~I~~~l~~~ 235 (236)
T 1q3t_A 163 VDERAERRYKENIAKGIETDLETLKKEIAARDYKDSHRETSPLKQAE-DAVYLDTTGLNIQEVVEKIKAEAEKR 235 (236)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTCSSSCCSCCT-TCEEEECSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhcccccccccC-CEEEEcCCCCCHHHHHHHHHHHHHhh
Confidence 976421 233 3355555555542 111111111234322 24679998 49999999999887653
No 81
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.12 E-value=4.8e-10 Score=106.32 Aligned_cols=165 Identities=16% Similarity=0.176 Sum_probs=99.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcc--------hHHHHhhhhcCCccchH----
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGL--------NSRIKSSVSAGDFVNRD---- 291 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~--------g~~i~~~l~~G~~vPd~---- 291 (520)
.+..|+|+|+|||||||+++.|++.+.+..+.+++...| +.. .+..- .+.+...+..|..+...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR---~~~-~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTR---NKR-EKETNGVDYYFVDKDDFERKLKEGQFLEFDKYAN 86 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECS---CCC-TTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCC---CCC-CCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCC
Confidence 467899999999999999999999873325667766666 321 11111 12344444444433211
Q ss_pred ----HHHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCC-CCCEEEec-CChhhhh---ccCCCCCHHHHHHH
Q psy11031 292 ----VVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQI-HPPMILID-CSKLVLH---KGQIDNSVSAFRRR 362 (520)
Q Consensus 292 ----lv~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~-p~~VI~Ld-~~~~~~~---r~R~dD~~e~~~~R 362 (520)
...+.+...+. .+.++|+|+.+....+ +.+.+.. ...+|||+ ++.+.+. +.|..++.+.+.+|
T Consensus 87 ~~~~~~~~~i~~~l~-----~g~~vi~d~~~~~~~~---l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~~~~~~i~~r 158 (204)
T 2qor_A 87 NFYGTLKSEYDLAVG-----EGKICLFEMNINGVKQ---LKESKHIQDGIYIFVKPPSIDILLGRLKNRNTEKPEEINKR 158 (204)
T ss_dssp EEEEEEHHHHHHHHH-----TTCEEEEECCHHHHHH---HHHCSSCSCCEEEEEECSCHHHHHHHHHTCTTSCHHHHHHH
T ss_pred CeecCCHHHHHHHHH-----cCCeEEEEECHHHHHH---HHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 00123333344 4678999997755444 3333321 23689998 8887643 24555678889999
Q ss_pred HHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031 363 LELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK 405 (520)
Q Consensus 363 l~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~ 405 (520)
+...+....+. +....+ ++ |+.+ ++++++++|.+.|..
T Consensus 159 l~~~~~~~~~~--~~~~~d-~v-i~n~-~~e~~~~~i~~~i~~ 196 (204)
T 2qor_A 159 MQELTREMDEA--DKVGFN-YF-IVND-DLARTYAELREYLLG 196 (204)
T ss_dssp HHHHHHHHHHH--HHHTCS-EE-EECS-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--hhccCc-EE-EECc-CHHHHHHHHHHHHHH
Confidence 88776544321 222222 34 4444 899999999888865
No 82
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.12 E-value=1e-10 Score=111.64 Aligned_cols=160 Identities=9% Similarity=0.101 Sum_probs=90.3
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCCC------CeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHH-
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPN------WTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVL- 294 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g------~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~- 294 (520)
...+.+|+|+|+|||||||+|+.|++.+ + +.+++ ++.++ ............- + .+.+.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l-~~~~g~~~~~~~-~d~~r---~~l~~~~~~~~~~------r----~~~~~~ 86 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQL-VRDRRVHAYRLD-GDNIR---FGLNKDLGFSEAD------R----NENIRR 86 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHH-HHHHCCCEEEEC-HHHHT---TTTTTTCCSSHHH------H----HHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHh-ccccCCcEEEEC-ChHHh---hhhccccCCCHHH------H----HHHHHH
Confidence 3457899999999999999999999876 5 67777 45556 3321110000000 0 01222
Q ss_pred --HHHHHHHhccccCCCcEEEEeCCCC----CHHHHHHHHh------hcCCCCCEEEecCChhhhhccCCCCCHHHHHHH
Q psy11031 295 --DIVYAEMKKTKYTEADGIVIDGFPR----EMSQLIDFEN------KYQIHPPMILIDCSKLVLHKGQIDNSVSAFRRR 362 (520)
Q Consensus 295 --~ll~~~l~~~~~~~~~G~ILDGFPr----t~~Qae~l~~------~~~~p~~VI~Ld~~~~~~~r~R~dD~~e~~~~R 362 (520)
.++...+. .+..+|+| |+. +.++...+.. ..+.|+.+|+|+|+.+.+.++.. .+.+.+.
T Consensus 87 ~~~~~~~~l~-----~g~~VI~d-~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~~---r~~~~~~ 157 (211)
T 1m7g_A 87 IAEVAKLFAD-----SNSIAITS-FISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDP---KGLYKKA 157 (211)
T ss_dssp HHHHHHHHHH-----TTCEEEEE-CCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCT---TCHHHHH
T ss_pred HHHHHHHHHH-----CCCEEEEe-cCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhhh---HHHHHHH
Confidence 22223333 35678888 653 2333444443 22345679999999987654321 1122222
Q ss_pred HHHHHHHhHHHHHHhhh-CCCEEEEECCC-CHHHHHHHHHHHHHH
Q psy11031 363 LELFRERTLPMLRAMDV-ETRLTIVDGDT-QLPQVREEFERVLKK 405 (520)
Q Consensus 363 l~~f~~~~~~l~~~y~~-~~~l~~IDa~~-~~e~V~~~I~~~I~~ 405 (520)
.+.|......+..+|+. ....++||++. +++++.+.|...|..
T Consensus 158 r~~~~~~~~~~~~~y~~~~~~~~~IDt~~~s~eev~~~I~~~l~~ 202 (211)
T 1m7g_A 158 REGVIKEFTGISAPYEAPANPEVHVKNYELPVQDAVKQIIDYLDT 202 (211)
T ss_dssp HHTSSSSCBTTTBCCCCCSSCSEEEECSSSCHHHHHHHHHHHHHH
T ss_pred HhcchhhhhhhhhhccCCCCCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 22232222233345542 12247899998 999999999887753
No 83
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.09 E-value=8.5e-10 Score=104.29 Aligned_cols=161 Identities=13% Similarity=0.046 Sum_probs=90.9
Q ss_pred cCCCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHH---HHH
Q psy11031 220 VERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVV---LDI 296 (520)
Q Consensus 220 ~~~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv---~~l 296 (520)
|....+.+|+|+|++||||||+++.|++.+ |..+++.+++.+ ... . .....|....+... ...
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-g~~~i~~d~~~~---~~~---------~-~~~~~g~~~~~~~~~~~~~~ 89 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET-GLEFAEADAFHS---PEN---------I-ATMQRGIPLTDEDRWPWLRS 89 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH-CCEEEEGGGGSC---HHH---------H-HHHHTTCCCCHHHHHHHHHH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh-CCeEEccccccc---HHH---------H-HHHhcCCCCCCcccccHHHH
Confidence 344567899999999999999999999997 999999877643 110 0 00111222221111 112
Q ss_pred HHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-c--cCC--CCCHHHHHHHHHHHHHHhH
Q psy11031 297 VYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-K--GQI--DNSVSAFRRRLELFRERTL 371 (520)
Q Consensus 297 l~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r--~R~--dD~~e~~~~Rl~~f~~~~~ 371 (520)
+...+.. ....+..+|+|.-.....+.+.+.+.. .+..+|+|+|+.+.+. | .|. ....+.++..+ .
T Consensus 90 ~~~~~~~-~~~~g~~viid~~~~~~~~~~~l~~~~-~~~~vv~l~~~~e~l~~Rl~~R~~~~~~~~~l~~~~-------~ 160 (200)
T 4eun_A 90 LAEWMDA-RADAGVSTIITCSALKRTYRDVLREGP-PSVDFLHLDGPAEVIKGRMSKREGHFMPASLLQSQL-------A 160 (200)
T ss_dssp HHHHHHH-HHHTTCCEEEEECCCCHHHHHHHTTSS-SCCEEEEEECCHHHHHHHHTTCSCCSSCGGGHHHHH-------H
T ss_pred HHHHHHH-HHhcCCCEEEEchhhhHHHHHHHHHhC-CceEEEEEeCCHHHHHHHHHhcccCCCCHHHHHHHH-------H
Confidence 2222220 112345788887545555555555433 3456899999987642 1 232 22222332222 2
Q ss_pred HHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHH
Q psy11031 372 PMLRAMDVETRLTIVDGDTQLPQVREEFERVLK 404 (520)
Q Consensus 372 ~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~ 404 (520)
....+|... ..++||++.+++++.+.|...|.
T Consensus 161 ~~~~~~~~~-~~~~Id~~~~~~e~~~~I~~~l~ 192 (200)
T 4eun_A 161 TLEALEPDE-SGIVLDLRQPPEQLIERALTWLD 192 (200)
T ss_dssp HCCCCCTTS-CEEEEETTSCHHHHHHHHHHHHC
T ss_pred HhCCCCCCC-CeEEEECCCCHHHHHHHHHHHHH
Confidence 222344332 46789999999999998887663
No 84
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.09 E-value=1.8e-10 Score=110.00 Aligned_cols=167 Identities=12% Similarity=0.138 Sum_probs=96.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhc-ccccCCcchHHHHhh------------------hhcC
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFAN-IEDDGEGLNSRIKSS------------------VSAG 285 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~-~~~~~t~~g~~i~~~------------------l~~G 285 (520)
|.+|+|.|++||||||+|+.|++++ |+.+++.+++++.... ....+. +..+.++ +..|
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~-g~~~~~~d~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~f~~~~~~g~~i~~~g 79 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL-SMIYVDTGAMYRALTYKYLKLNK--TEDFAKLVDQTTLDLTYKADKGQCVILDN 79 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT-TCEEEEHHHHHHHHHHHHHHTTS--CSCHHHHHHTCCEEEEECTTCCEEEEETT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc-CCceecCChHHHHHHHHHHHhhh--hHHHHHHHHhccccccccccccceEEeCC
Confidence 5679999999999999999999998 9999999999982100 011222 2222222 1345
Q ss_pred CccchH----HHH-------------HHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh
Q psy11031 286 DFVNRD----VVL-------------DIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH 348 (520)
Q Consensus 286 ~~vPd~----lv~-------------~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~ 348 (520)
+.+... .+. +.+..... ....+.++|+||- +.. ...+...+.+|||+|+.+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~--~~~~~~~~vi~g~--~~~-----~~~~~~~~~vi~l~a~~e~~~ 150 (219)
T 2h92_A 80 EDVTDFLRNNDVTQHVSYVASKEPVRSFAVKKQK--ELAAEKGIVMDGR--DIG-----TVVLPDADLKVYMIASVEERA 150 (219)
T ss_dssp EECGGGSSSSHHHHHHHHHHTSHHHHHHHHHHHH--HHHTTCCEEEEES--SCC-----CCCCTTCSEEEEEECCHHHHH
T ss_pred ccchhhcCcHHHHHHHHHhccCHHHHHHHHHHHH--HhccCCcEEEEcC--Ccc-----ceecCCCCEEEEEECCHHHHH
Confidence 433321 111 11111111 1224568999993 210 012334567999999987642
Q ss_pred -c------cCC-CCCHHHHHHHHHHH--HHHhHHHHHHhhhCCCEEEEECCC-CHHHHHHHHHHHHH
Q psy11031 349 -K------GQI-DNSVSAFRRRLELF--RERTLPMLRAMDVETRLTIVDGDT-QLPQVREEFERVLK 404 (520)
Q Consensus 349 -r------~R~-dD~~e~~~~Rl~~f--~~~~~~l~~~y~~~~~l~~IDa~~-~~e~V~~~I~~~I~ 404 (520)
| +|. .++.+.+.+++..- ......+..+|.. ...++||++. +++++.+.|.+.+.
T Consensus 151 ~R~~~~~~~r~~~~~~e~~~~~~~~r~~~d~~r~~~~~~~~-~d~~~Id~~~~~~ee~~~~I~~~l~ 216 (219)
T 2h92_A 151 ERRYKDNQLRGIESNFEDLKRDIEARDQYDMNREISPLRKA-DDAVTLDTTGKSIEEVTDEILAMVS 216 (219)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHCSSSCSCCC-TTCEEEECTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcccCHHHHHHHHHHHHHhhhhhhccccccC-CCeEEEECCCCCHHHHHHHHHHHHh
Confidence 2 233 23566677766422 1121222234433 2346789885 99999999988764
No 85
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.09 E-value=6.5e-10 Score=102.87 Aligned_cols=156 Identities=14% Similarity=0.241 Sum_probs=89.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMK 302 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~ 302 (520)
..+++|+|+|+|||||||+|+.|++++ |+.+++++++++ ... .....+... .......+.+.+.+...+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~-~~~~~~~d~~~~---~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 78 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS-GLKYINVGDLAR---EEQ-LYDGYDEEY-----DCPILDEDRVVDELDNQMR 78 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH-CCEEEEHHHHHH---HHT-CEEEEETTT-----TEEEECHHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh-CCeEEEHHHHHh---hcc-hhhhhhhhh-----cCccCChHHHHHHHHHHHh
Confidence 356789999999999999999999997 999999999998 321 001111100 1112344555666665555
Q ss_pred ccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhc---cCCCCCHHHHHHHH--HHHHHHhHHHHHHh
Q psy11031 303 KTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHK---GQIDNSVSAFRRRL--ELFRERTLPMLRAM 377 (520)
Q Consensus 303 ~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r---~R~dD~~e~~~~Rl--~~f~~~~~~l~~~y 377 (520)
. .|+|+|+..+.. +.. ..++.+|||+|+.+.+.+ .|.. .......+. +.+..........|
T Consensus 79 --~----g~~vv~~~~~~~-----~~~--~~~~~vi~L~~~~e~l~~R~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~y 144 (180)
T 3iij_A 79 --E----GGVIVDYHGCDF-----FPE--RWFHIVFVLRTDTNVLYERLETRGY-NEKKLTDNIQCEIFQVLYEEATASY 144 (180)
T ss_dssp --H----CCEEEECSCCTT-----SCG--GGCSEEEEEECCHHHHHHHHHHTTC-CHHHHHHHHHHHHTTHHHHHHHHHS
T ss_pred --c----CCEEEEechhhh-----cch--hcCCEEEEEECCHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1 478888754331 111 115679999999986532 2321 222222221 22222223334455
Q ss_pred hhCCCEEEEECCCCHHHHHHHHHHHHH
Q psy11031 378 DVETRLTIVDGDTQLPQVREEFERVLK 404 (520)
Q Consensus 378 ~~~~~l~~IDa~~~~e~V~~~I~~~I~ 404 (520)
.. +.++.++ +.++++|.+.+...+.
T Consensus 145 ~~-~~~i~~~-~~~~~ev~~~v~~i~~ 169 (180)
T 3iij_A 145 KE-EIVHQLP-SNKPEELENNVDQILK 169 (180)
T ss_dssp CG-GGEEEEE-CSSHHHHHHHHHHHHH
T ss_pred CC-CeEEEcC-CCCHHHHHHHHHHHHH
Confidence 42 3444444 5889999655554443
No 86
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.09 E-value=3.1e-10 Score=112.06 Aligned_cols=162 Identities=13% Similarity=0.082 Sum_probs=101.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh-cCCccchHHHHHHHHHHHhc
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS-AGDFVNRDVVLDIVYAEMKK 303 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~-~G~~vPd~lv~~ll~~~l~~ 303 (520)
..+|+|+|++||||||+++.|++++ |+.+++.+++++ ... . |..+..++. .|+....++..+++...+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l-g~~~~d~d~~~~---~~~-~----g~~i~~i~~~~ge~~fr~~e~~~l~~l~~- 117 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL-GYTFFDCDTLIE---QAM-K----GTSVAEIFEHFGESVFREKETEALKKLSL- 117 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH-TCEEEEHHHHHH---HHS-T----TSCHHHHHHHHCHHHHHHHHHHHHHHHHH-
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc-CCcEEeCcHHHH---HHh-c----CccHHHHHHHhCcHHHHHHHHHHHHHHHh-
Confidence 5679999999999999999999997 999999999998 332 1 223444443 3554444444445544333
Q ss_pred cccCCCcEEEEe--CCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhcc--------CC-------CCCHHHHHHHHHHH
Q psy11031 304 TKYTEADGIVID--GFPREMSQLIDFENKYQIHPPMILIDCSKLVLHKG--------QI-------DNSVSAFRRRLELF 366 (520)
Q Consensus 304 ~~~~~~~G~ILD--GFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r~--------R~-------dD~~e~~~~Rl~~f 366 (520)
. ...++|.+ |++........|. ...+|||+++.+.+.++ |+ +|+.+....++...
T Consensus 118 -~--~~~~Via~GgG~v~~~~~~~~l~-----~~~vV~L~a~~e~l~~Rl~~~~~~~Rpl~~~~~~~d~~~~~~~~l~~l 189 (250)
T 3nwj_A 118 -M--YHQVVVSTGGGAVIRPINWKYMH-----KGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTI 189 (250)
T ss_dssp -H--CSSEEEECCGGGGGSHHHHHHHT-----TSEEEEEECCHHHHHHHHHC----------------CHHHHHHHHHHH
T ss_pred -h--cCCcEEecCCCeecCHHHHHHHh-----CCcEEEEECCHHHHHHHHhhcCCCCCCcccCCCcccchhhHHHHHHHH
Confidence 1 12344444 5777777777664 25799999999764321 21 11112233445555
Q ss_pred HHHhHHHHHHhhhCCCEEEE----------EC-CCCHHHHHHHHHHHHHHHH
Q psy11031 367 RERTLPMLRAMDVETRLTIV----------DG-DTQLPQVREEFERVLKKII 407 (520)
Q Consensus 367 ~~~~~~l~~~y~~~~~l~~I----------Da-~~~~e~V~~~I~~~I~~~i 407 (520)
.+...+ +|...+.++.+ |. +.+++++.+.|.+.|...+
T Consensus 190 ~~eR~~---lY~~ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~~~~ 238 (250)
T 3nwj_A 190 WDARGE---AYTKASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSYL 238 (250)
T ss_dssp HHHHHH---HHTTSSEEEEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---HHhhCCEEEEecccccccccccCCCCCHHHHHHHHHHHHHHHh
Confidence 555444 46554433322 43 4789999999998887764
No 87
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.08 E-value=3e-10 Score=107.64 Aligned_cols=170 Identities=12% Similarity=0.125 Sum_probs=95.3
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhc-C--CccchHHHHHHHH
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSA-G--DFVNRDVVLDIVY 298 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~-G--~~vPd~lv~~ll~ 298 (520)
...+.+|.|.|++||||||+|+.|++.+.++.+++.+++++ ....- ..+ ...+.. . ..+....+.+.+.
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~---~~~~~--~~~---~~~~~~~~~~~~~~~~~l~~~i~ 89 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFK---PESEI--ETD---KNGFLQYDVLEALNMEKMMSAIS 89 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBC---CGGGS--CBC---TTSCBCCSSGGGBCHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCcccc---CHhHh--hcc---ccCCChhHHHHHhHHHHHHHHHH
Confidence 34567899999999999999999998754799999999887 22100 000 000000 0 0011122333333
Q ss_pred HHHhcc----------ccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-c--cCCCCCHHHHHHHHH-
Q psy11031 299 AEMKKT----------KYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-K--GQIDNSVSAFRRRLE- 364 (520)
Q Consensus 299 ~~l~~~----------~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r--~R~dD~~e~~~~Rl~- 364 (520)
..+... .......||+||++.-. . +.....++.+++++|+.+... | .|..+. +.+..++.
T Consensus 90 ~~l~~~~~~~~~~~~~~~~~~~~vi~eg~~~~~--~---~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~-e~~~~~~~~ 163 (207)
T 2qt1_A 90 CWMESARHSVVSTDQESAEEIPILIIEGFLLFN--Y---KPLDTIWNRSYFLTIPYEECKRRRSTRVYQP-PDSPGYFDG 163 (207)
T ss_dssp HHHHHHTTSSCCC-----CCCCEEEEECTTCTT--C---GGGTTTCSEEEEEECCHHHHHHHHHHSCCSS-CCCTTHHHH
T ss_pred HHHhCCCCCCcCCCeeecCCCCEEEEeehHHcC--c---HHHHHhcCeeEEEECCHHHHHHHHHHcCCCc-cchHHHHHH
Confidence 322200 01124689999975331 1 112234677999999987532 1 232111 11112222
Q ss_pred HHHHHhHHHHHHhhhC-CCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031 365 LFRERTLPMLRAMDVE-TRLTIVDGDTQLPQVREEFERVLKK 405 (520)
Q Consensus 365 ~f~~~~~~l~~~y~~~-~~l~~IDa~~~~e~V~~~I~~~I~~ 405 (520)
.+........+.|... +.++.||++.++++++++|...|..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~v~~Id~~~~~eev~~~I~~~l~~ 205 (207)
T 2qt1_A 164 HVWPMYLKYRQEMQDITWEVVYLDGTKSEEDLFLQVYEDLIQ 205 (207)
T ss_dssp THHHHHHHHHHHGGGCSSCCEEEETTSCHHHHHHHHHHHHTT
T ss_pred HHhHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHHh
Confidence 2222223444556543 5678899999999999999887753
No 88
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.06 E-value=3.4e-10 Score=111.11 Aligned_cols=171 Identities=14% Similarity=0.170 Sum_probs=93.6
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCe----------eeehhhHHhhhhcccccCCcchHHHHhhhhcCCcc---
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWT----------QISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFV--- 288 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~----------~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~v--- 288 (520)
..++.+|.|.|++||||||+|+.|++++ |+. +++++++++ ... .+ .+. ....|..+
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~~l-g~~~~d~~~~~~~~i~~D~~~~---~~~-----~~-~~~-~~~~g~~~f~~ 87 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQLL-GQNEVDYRQKQVVILSQDSFYR---VLT-----SE-QKA-KALKGQFNFDH 87 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHT-TGGGSCGGGCSEEEEEGGGGBC---CCC-----HH-HHH-HHHTTCSCTTS
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHh-hhhcccccCCceEEEecCcccc---ccC-----hh-hhh-hhccCCCCCCC
Confidence 4467899999999999999999999997 987 799999987 321 01 111 11122211
Q ss_pred ch----HHHHHHHHHHHhcc-------------------ccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChh
Q psy11031 289 NR----DVVLDIVYAEMKKT-------------------KYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKL 345 (520)
Q Consensus 289 Pd----~lv~~ll~~~l~~~-------------------~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~ 345 (520)
|+ +.+.+.|..-.... .......||+||++.-.+. .+... .+.+|||+|+.+
T Consensus 88 ~~~~d~~~l~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~~--~~~~~---~d~vi~l~~~~e 162 (252)
T 1uj2_A 88 PDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQ--EVRDL---FQMKLFVDTDAD 162 (252)
T ss_dssp GGGBCHHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSSH--HHHHH---CSEEEEEECCHH
T ss_pred cchhhHHHHHHHHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccCH--HHHHh---cCeeEEEeCCHH
Confidence 22 22334443322100 0113468999997642111 12222 367999999997
Q ss_pred hhhc---cCC----CCCHHHHHHHHHHHHHH-hHHHH-HHhhhCCCEE--EEECCCCHHHHHHHHHHHHHHHHH
Q psy11031 346 VLHK---GQI----DNSVSAFRRRLELFRER-TLPML-RAMDVETRLT--IVDGDTQLPQVREEFERVLKKIID 408 (520)
Q Consensus 346 ~~~r---~R~----dD~~e~~~~Rl~~f~~~-~~~l~-~~y~~~~~l~--~IDa~~~~e~V~~~I~~~I~~~i~ 408 (520)
.+.+ .|. ..+.+.+.+++...... ....+ .++...+.++ .||++.+++++++.|...+...+.
T Consensus 163 ~~~~R~~~R~~~~rg~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~id~~~s~e~v~~~I~~~l~~~~~ 236 (252)
T 1uj2_A 163 TRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLVAINLIVQHIQDILNGGPS 236 (252)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEETGGGCHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhhhCCCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEEecCCCChhHHHHHHHHHHHHHccchh
Confidence 6421 121 23566666555432211 11111 1222233222 238888899999998887765443
No 89
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.06 E-value=5.3e-09 Score=96.12 Aligned_cols=156 Identities=16% Similarity=0.109 Sum_probs=88.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchH---HHHHHHHHH
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRD---VVLDIVYAE 300 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~---lv~~ll~~~ 300 (520)
...+|+|+|++||||||+++.|++.+ |+.+++.+++.+ .. .+.. ...|..+.+. .....+...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~-g~~~i~~d~~~~---~~---------~~~~-~~~g~~~~~~~~~~~~~~~~~~ 72 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL-HAAFLDGDFLHP---RR---------NIEK-MASGEPLNDDDRKPWLQALNDA 72 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH-TCEEEEGGGGCC---HH---------HHHH-HHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh-CcEEEeCccccc---hH---------HHHH-hhcCcCCCccccccHHHHHHHH
Confidence 35789999999999999999999987 999999877643 10 0000 0011111110 011122222
Q ss_pred HhccccCCCcEEEEe-CCCCCHHHHHHHHhhcCCCC-CEEEecCChhhhh-c--cCCC--CCHHHHHHHHHHHHHHhHHH
Q psy11031 301 MKKTKYTEADGIVID-GFPREMSQLIDFENKYQIHP-PMILIDCSKLVLH-K--GQID--NSVSAFRRRLELFRERTLPM 373 (520)
Q Consensus 301 l~~~~~~~~~G~ILD-GFPrt~~Qae~l~~~~~~p~-~VI~Ld~~~~~~~-r--~R~d--D~~e~~~~Rl~~f~~~~~~l 373 (520)
+.. ....+.+||+| |+++ ..+.+.+.+.. ++ .+|+|+||.+.+. | .|.. ...+.+...+..| .+.
T Consensus 73 ~~~-~~~~~~~~vi~~~~~~-~~~~~~l~~~~--~~~~vv~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~----~~~ 144 (175)
T 1knq_A 73 AFA-MQRTNKVSLIVCSALK-KHYRDLLREGN--PNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETL----QEP 144 (175)
T ss_dssp HHH-HHHHCSEEEEECCCCS-HHHHHHHHTTC--TTEEEEEEECCHHHHHHHHHTSTTCCCCHHHHHHHHHHC----CCC
T ss_pred HHH-HHhcCCcEEEEeCchH-HHHHHHHHhcC--CCEEEEEEECCHHHHHHHHHhccCCCCchHHHHHHHHhh----hCc
Confidence 220 11124579998 6653 34455555432 34 6999999997642 1 2321 1244343322211 111
Q ss_pred HHHhhhCCCEEEEECCCCHHHHHHHHHHHHH
Q psy11031 374 LRAMDVETRLTIVDGDTQLPQVREEFERVLK 404 (520)
Q Consensus 374 ~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~ 404 (520)
+|.. ...++||++.+++++.++|.+.|.
T Consensus 145 --~~~~-~~~~~Id~~~~~~~~~~~i~~~l~ 172 (175)
T 1knq_A 145 --GADE-TDVLVVDIDQPLEGVVASTIEVIK 172 (175)
T ss_dssp --CTTC-TTEEEEECSSCHHHHHHHHHHHHH
T ss_pred --ccCC-CCeEEEeCCCCHHHHHHHHHHHHh
Confidence 1432 236789999999999999887663
No 90
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.05 E-value=6.5e-10 Score=102.64 Aligned_cols=154 Identities=12% Similarity=0.094 Sum_probs=81.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeeh----hhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHH
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISL----GKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYA 299 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~----gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~ 299 (520)
++.+|+|.|+|||||||+|+.|++++ |+.+++. |+.++ +....+... +..-+ .-.+.+.+++..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l-~~~~i~d~~~~g~~i~---~~~~~g~~~-------~~~~~-~~~~~~~~~i~~ 71 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL-PGSFVFEPEEMGQALR---KLTPGFSGD-------PQEHP-MWIPLMLDALQY 71 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS-TTCEECCTHHHHHHHH---HTSTTCCSC-------GGGST-THHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc-CCCEEEchhhhHHHHH---HhCccccch-------hhhhH-HHHHHHHHHHHH
Confidence 46789999999999999999999997 9988832 33444 222111000 00000 000234455555
Q ss_pred HHhccccCCCcEEEEeCCCCCHHHHHHHHhh---cCCCCCEEEecCChhhhh-c--cCCC--CCHHHHHHHHHHHHHHhH
Q psy11031 300 EMKKTKYTEADGIVIDGFPREMSQLIDFENK---YQIHPPMILIDCSKLVLH-K--GQID--NSVSAFRRRLELFRERTL 371 (520)
Q Consensus 300 ~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~---~~~p~~VI~Ld~~~~~~~-r--~R~d--D~~e~~~~Rl~~f~~~~~ 371 (520)
.+. . .+..+|+|+...+....+.+... .+....+|+|+|+.+.+. | .|.. ...+ +++.+.+...
T Consensus 72 ~l~--~--~g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~~r~~~~~----~~~~~~~~~~ 143 (183)
T 2vli_A 72 ASR--E--AAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDGQPQVNVG----TVEDRLNELR 143 (183)
T ss_dssp HHH--H--CSSCEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC----CCHH----HHHHHHHHHT
T ss_pred HHH--h--CCCcEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhccccchhHH----HHHHHHHhhc
Confidence 454 1 24558889876654333222222 222334699999987642 2 2221 2222 3333333333
Q ss_pred HHHHHhhhCCCEEEEECC-CCHHHHHHHHHHHHH
Q psy11031 372 PMLRAMDVETRLTIVDGD-TQLPQVREEFERVLK 404 (520)
Q Consensus 372 ~l~~~y~~~~~l~~IDa~-~~~e~V~~~I~~~I~ 404 (520)
++ + | . + +||++ .+++++.+.|.+.|.
T Consensus 144 ~~-~-~---~-~-~Id~~~~~~~~~~~~I~~~l~ 170 (183)
T 2vli_A 144 GE-Q-F---Q-T-HIDTAGLGTQQVAEQIAAQVG 170 (183)
T ss_dssp SG-G-G---C-S-EEECTTCCHHHHHHHHHHHHT
T ss_pred cc-c-c---c-e-EeeCCCCCHHHHHHHHHHHHH
Confidence 33 2 2 2 3 79998 899999998887764
No 91
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.04 E-value=8.3e-10 Score=104.10 Aligned_cols=160 Identities=13% Similarity=0.174 Sum_probs=92.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh------cCCcc----------c
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS------AGDFV----------N 289 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~------~G~~v----------P 289 (520)
.+|.|+|++||||||+|+.|++ + |+.+++++++++ +....+......+.+.+. .|... .
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~-g~~~i~~d~~~~---~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~ 76 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-L-GAYVLDADKLIH---SFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKD 76 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-T-TCEEEEHHHHHH---GGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSC
T ss_pred eEEEEECCCCcCHHHHHHHHHH-C-CCEEEEccHHHH---HHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCC
Confidence 3799999999999999999998 7 999999999998 443322222222222211 11110 0
Q ss_pred -------hHHHHHHH----HHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhc---cCCCCC
Q psy11031 290 -------RDVVLDIV----YAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHK---GQIDNS 355 (520)
Q Consensus 290 -------d~lv~~ll----~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r---~R~dD~ 355 (520)
..+....+ ...+. .......+|+||--..... +. ..++.+|+|+|+.+.+.+ .| ..+
T Consensus 77 ~~~~~~l~~l~~~~v~~~~~~~~~--~~~~~~~vive~~~l~~~~---~~---~~~~~~i~l~~~~e~~~~Rl~~R-~~~ 147 (204)
T 2if2_A 77 EEKLRKLEEITHRALYKEIEKITK--NLSEDTLFILEASLLVEKG---TY---KNYDKLIVVYAPYEVCKERAIKR-GMS 147 (204)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHH--HSCTTCCEEEECSCSTTTT---CG---GGSSEEEEECCCHHHHHHHHHHT-CCC
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHH--hccCCCEEEEEccccccCC---ch---hhCCEEEEEECCHHHHHHHHHHc-CCC
Confidence 11111111 12222 1111267899984211000 11 125679999999976432 34 334
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031 356 VSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK 405 (520)
Q Consensus 356 ~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~ 405 (520)
.+.+..|+.... +...++...+ ++||++.+++++.++|...+..
T Consensus 148 ~~~~~~~~~~~~----~~~~~~~~ad--~vId~~~~~~~~~~~i~~~l~~ 191 (204)
T 2if2_A 148 EEDFERRWKKQM----PIEEKVKYAD--YVIDNSGSIEETYKQVKKVYEE 191 (204)
T ss_dssp HHHHHHHHTTSC----CHHHHGGGCS--EECCCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCC----ChhHHHhcCC--EEEECCCCHHHHHHHHHHHHHH
Confidence 556666665432 2334444333 4689999999999988877643
No 92
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=99.02 E-value=3.6e-10 Score=111.51 Aligned_cols=180 Identities=8% Similarity=0.053 Sum_probs=91.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeeh-hhHHhhh----------hcccccCCcchHHHHhhh-hcCCccch
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISL-GKLLRYF----------ANIEDDGEGLNSRIKSSV-SAGDFVNR 290 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~-gdLlr~~----------~~~~~~~t~~g~~i~~~l-~~G~~vPd 290 (520)
.++.+|+|.|++||||||+|+.|++++.++.+++. .+-.... ......++. +++.+ ..+.....
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i~ep~~~~~~~~~~~~~~~~~~~~~p~g~~----~~~~~~~~~~~~~~ 97 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGN----VLQMMYEKPERWSF 97 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEECCCHHHHTSCCCC------------CCCC----HHHHHHHCHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcCCCEEEecchhhhhccccccccccccccccccCCc----hHHHHHhCchhcch
Confidence 46789999999999999999999998645666632 1111000 000112222 33322 21110000
Q ss_pred HHHHHHHHHHH-----------hc---cccCCCcEEEEe----------CCCCCHH-------HHHHHHhhc---CCCCC
Q psy11031 291 DVVLDIVYAEM-----------KK---TKYTEADGIVID----------GFPREMS-------QLIDFENKY---QIHPP 336 (520)
Q Consensus 291 ~lv~~ll~~~l-----------~~---~~~~~~~G~ILD----------GFPrt~~-------Qae~l~~~~---~~p~~ 336 (520)
..-.-++..+. .. .....++.+|.| |++++.. +...+.... ..|+.
T Consensus 98 ~~~~~~l~~~~r~~~~~~~~~l~~~i~~~l~~g~~Vi~Dry~~s~~~y~~~~~~~~e~~~~~~~~~~l~~~~~~~~~pd~ 177 (263)
T 1p5z_B 98 TFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDG 177 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHTSGGGGSSSCEEEEESCHHHHHHTHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHCCSE
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCceEEecceeecHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhccCCCCe
Confidence 00011101111 10 000112335666 4556643 333343332 25778
Q ss_pred EEEecCChhhh-----hccCCCC---CHH---HHHHHHHHHHHH--hHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHH
Q psy11031 337 MILIDCSKLVL-----HKGQIDN---SVS---AFRRRLELFRER--TLPMLRAMDVETRLTIVDGDTQLPQVREEFERVL 403 (520)
Q Consensus 337 VI~Ld~~~~~~-----~r~R~dD---~~e---~~~~Rl~~f~~~--~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I 403 (520)
+|+|+++.+.+ .|+|..+ ..+ .+..+++.|.++ +.+.+.+|.. +.+++||++.++++|++.|...|
T Consensus 178 vi~L~~~~e~~~~Ri~~R~r~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~-~~~~~Id~~~~~eev~~~I~~~l 256 (263)
T 1p5z_B 178 IIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQE-VPILTLDVNEDFKDKYESLVEKV 256 (263)
T ss_dssp EEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGG-SCEEEEECCSCHHHHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHhcCCccccCccHHHHHHHHHHHHHHHhhccchhhhhhhcc-CCEEEEECCCCHHHHHHHHHHHH
Confidence 99999998753 2344321 222 222333333221 1222233333 45899999999999999999988
Q ss_pred HHHH
Q psy11031 404 KKII 407 (520)
Q Consensus 404 ~~~i 407 (520)
...+
T Consensus 257 ~~~l 260 (263)
T 1p5z_B 257 KEFL 260 (263)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7655
No 93
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.00 E-value=1.7e-09 Score=99.07 Aligned_cols=153 Identities=14% Similarity=0.178 Sum_probs=85.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcc
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKT 304 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~ 304 (520)
+.+|+|+|++||||||+++.|++.+ ++.+++.+++++ ... +..++...+. .|+..-.+.-..++. .+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l-~~~~id~d~~~~---~~~--~~~i~~i~~~---~g~~~~~~~~~~~l~-~l~-- 71 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQL-NMEFYDSDQEIE---KRT--GADVGWVFDL---EGEEGFRDREEKVIN-ELT-- 71 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHT-TCEEEEHHHHHH---HHH--TSCHHHHHHH---HHHHHHHHHHHHHHH-HHH--
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh-CCCEEeccHHHH---HHh--CcCHHHHHHH---HhHHHHHHHHHHHHH-HHH--
Confidence 4579999999999999999999997 999999988887 321 1222221111 121111111112222 232
Q ss_pred ccCCCcEEEEe---CCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhcc------CC----CCC-HHHHHHHHHHHHHHh
Q psy11031 305 KYTEADGIVID---GFPREMSQLIDFENKYQIHPPMILIDCSKLVLHKG------QI----DNS-VSAFRRRLELFRERT 370 (520)
Q Consensus 305 ~~~~~~G~ILD---GFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r~------R~----dD~-~e~~~~Rl~~f~~~~ 370 (520)
...++|+. |.+......+.|... +.+++|+|+.+.+.++ |+ ++. .+.++ .+....
T Consensus 72 ---~~~~~v~~~~~~~~~~~~~~~~l~~~----~~~i~l~~~~~~l~~R~~~r~~r~~~~~~~~~~~~~~----~~~~~r 140 (173)
T 1kag_A 72 ---EKQGIVLATGGGSVKSRETRNRLSAR----GVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLE----ALANER 140 (173)
T ss_dssp ---TSSSEEEECCTTGGGSHHHHHHHHHH----SEEEECCCCHHHHHSCC------CCSSSSCCCHHHHH----HHHHHH
T ss_pred ---hCCCeEEECCCeEEecHHHHHHHHhC----CEEEEEeCCHHHHHHHHhCCCCCCCCCCCCchHHHHH----HHHHHH
Confidence 23456664 566665555555442 4689999998765321 21 111 33333 222222
Q ss_pred HHHHHHhhhCCCEEEEECC-CCHHHHHHHHHHHHH
Q psy11031 371 LPMLRAMDVETRLTIVDGD-TQLPQVREEFERVLK 404 (520)
Q Consensus 371 ~~l~~~y~~~~~l~~IDa~-~~~e~V~~~I~~~I~ 404 (520)
.+ +|.... .++||++ .+++++.+.|...+.
T Consensus 141 ~~---~~~~~a-~~~id~~~~~~~~~~~~i~~~l~ 171 (173)
T 1kag_A 141 NP---LYEEIA-DVTIRTDDQSAKVVANQIIHMLE 171 (173)
T ss_dssp HH---HHHHHC-SEEC-----CHHHHHHHHHHHHC
T ss_pred HH---HHHhhC-CEEEECCCCCHHHHHHHHHHHHH
Confidence 23 344322 2568988 799999999887764
No 94
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=98.99 E-value=4.7e-09 Score=98.69 Aligned_cols=164 Identities=17% Similarity=0.104 Sum_probs=92.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcc-cccCCc------chHHHH-------------hhhhcC
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANI-EDDGEG------LNSRIK-------------SSVSAG 285 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~-~~~~t~------~g~~i~-------------~~l~~G 285 (520)
++|+|.|++||||||+|+.|++++ |+.+++.+++.+..... ...+.. +...+. ..+..|
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~l-g~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 81 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAAL-GVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLADG 81 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH-TCCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEEETT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc-CCceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEEECC
Confidence 389999999999999999999997 99999999999831100 001211 111111 122344
Q ss_pred CccchH-----------------HHHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh
Q psy11031 286 DFVNRD-----------------VVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH 348 (520)
Q Consensus 286 ~~vPd~-----------------lv~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~ 348 (520)
+.+..+ .+.+.+...+. ... .++|+||.-.. .......+.+|||+|+.+.+.
T Consensus 82 ~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~--~~~vi~g~~~~-------~~~~~~~d~~i~l~a~~e~~~ 150 (208)
T 3ake_A 82 EDLTSFLHTPEVDRVVSAVARLPGVRAWVNRRLK--EVP--PPFVAEGRDMG-------TAVFPEAAHKFYLTASPEVRA 150 (208)
T ss_dssp EECGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHH--HSC--SCEEEEESSCC-------CCCCTTCSEEEEEECCHHHHH
T ss_pred eeCchhhChHHHHHHHHHhcccHHHHHHHHHHHH--Hhc--CCEEEEcccee-------EEEecCCcEEEEEECCHHHHH
Confidence 443321 12222333333 233 68999997433 112233567999999998643
Q ss_pred c---cCCCCCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCC-CHHHHHHHHHHHHH
Q psy11031 349 K---GQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDT-QLPQVREEFERVLK 404 (520)
Q Consensus 349 r---~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~-~~e~V~~~I~~~I~ 404 (520)
+ .|...+.+.+.+++..-.... ..++......++||++. +++++.+.|.+.+.
T Consensus 151 ~R~~~r~~~~~~~~~~~~~~R~~~~---~~~~~~~ad~~~Id~~~~~~ee~~~~I~~~~~ 207 (208)
T 3ake_A 151 WRRARERPQAYEEVLRDLLRRDERD---KAQSAPAPDALVLDTGGMTLDEVVAWVLAHIR 207 (208)
T ss_dssp HHHHHTSSSCHHHHHHHHHHHHHTC-----CCCCCTTCEEEETTTSCHHHHHHHHHHHHH
T ss_pred HHHHhhcccCHHHHHHHHHHHHHHH---hhcccCCCCEEEEECCCCCHHHHHHHHHHHHh
Confidence 2 222233444444444211110 01112223346799996 99999999987763
No 95
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=98.95 E-value=3.1e-09 Score=99.56 Aligned_cols=161 Identities=15% Similarity=0.162 Sum_probs=91.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHH---HhhhhcCCccchHHH------
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRI---KSSVSAGDFVNRDVV------ 293 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i---~~~l~~G~~vPd~lv------ 293 (520)
.++.+|+|.|++||||||+|+.|++. |+.+++.+++++ ... .+.+ .... ..++..|. +....+
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~--g~~~id~d~~~~---~~~-~~~~-~~i~~~~~~~~~~g~-i~~~~l~~~~~~ 77 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW--GYPVLDLDALAA---RAR-ENKE-EELKRLFPEAVVGGR-LDRRALARLVFS 77 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT--TCCEEEHHHHHH---HHH-HHTH-HHHHHHCGGGEETTE-ECHHHHHHHHTT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC--CCEEEcccHHHH---Hhc-CChH-HHHHHHHHHHHhCCC-cCHHHHHHHHhC
Confidence 45789999999999999999999985 999999999988 332 1211 1111 11222222 222111
Q ss_pred ------------HHHH-HHHHhccccCC-CcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhc---cCCCCCH
Q psy11031 294 ------------LDIV-YAEMKKTKYTE-ADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHK---GQIDNSV 356 (520)
Q Consensus 294 ------------~~ll-~~~l~~~~~~~-~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r---~R~dD~~ 356 (520)
..++ ...+.. ...+ ...+|+|| |.-.. . .+. ..++.+|||+|+.+.+.+ .|...+.
T Consensus 78 ~~~~~~~l~~~~~~~i~~~~i~~-~~~~g~~~vi~d~-~~l~~-~-~~~---~~~d~~i~l~~~~e~~~~R~~~R~~~~~ 150 (203)
T 1uf9_A 78 DPERLKALEAVVHPEVRRLLMEE-LSRLEAPLVFLEI-PLLFE-K-GWE---GRLHGTLLVAAPLEERVRRVMARSGLSR 150 (203)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH-HHTCCCSEEEEEC-TTTTT-T-TCG---GGSSEEEEECCCHHHHHHHHHTTTCCTT
T ss_pred CHHHHHHHHHHhChHHHHHHHHH-hhhcCCCEEEEEe-cceec-c-Cch---hhCCEEEEEECCHHHHHHHHHHcCCCCH
Confidence 1111 122221 1123 46788887 32111 0 011 224679999999876432 3433344
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHH
Q psy11031 357 SAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLK 404 (520)
Q Consensus 357 e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~ 404 (520)
+.+..|+... .+...++...+ ++||++.+++++.+.|...+.
T Consensus 151 ~~~~~~i~~~----~~~~~~~~~ad--~vId~~~~~~~~~~~i~~~~~ 192 (203)
T 1uf9_A 151 EEVLARERAQ----MPEEEKRKRAT--WVLENTGSLEDLERALKAVLA 192 (203)
T ss_dssp HHHHHHHTTS----CCHHHHHHHCS--EEECCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC----CChhHHHHhCC--EEEECCCCHHHHHHHHHHHHH
Confidence 4555555531 12223333333 368999899999888877764
No 96
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.91 E-value=7.6e-09 Score=101.72 Aligned_cols=174 Identities=17% Similarity=0.281 Sum_probs=94.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhh-cccccCCcc-----hHHHHhh----h----------
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFA-NIEDDGEGL-----NSRIKSS----V---------- 282 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~-~~~~~~t~~-----g~~i~~~----l---------- 282 (520)
....+|.|.|++||||||+++.|++++ |+.+++.|.++|... .....+... -..+... +
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~L-g~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESL-NWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVI 103 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHT-TCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhc-CCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEE
Confidence 346789999999999999999999997 999999999996210 000111111 0111110 0
Q ss_pred hcCCccch-----------------HHHHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChh
Q psy11031 283 SAGDFVNR-----------------DVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKL 345 (520)
Q Consensus 283 ~~G~~vPd-----------------~lv~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~ 345 (520)
..+..+.+ ..+.+.+..... ......|+|+||--.. .. .+...+.+|||+++.+
T Consensus 104 l~~~~v~~~i~~~~v~~~~s~~~~~~~vr~~l~~~~~--~~a~~~~~V~~gr~~~--~~-----v~~~~~~~ifl~A~~e 174 (252)
T 4e22_A 104 LEGEDVSNEIRTETVGNTASQAAAFPRVREALLRRQR--AFREAPGLIADGRDMG--TI-----VFPDAPVKIFLDASSQ 174 (252)
T ss_dssp ETTEECTTGGGSHHHHHHHHHHTTSHHHHHHHHHHHH--TTCCSSCEEEEESSCC--CC-----CSTTCSEEEEEECCHH
T ss_pred ECCeehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHH--HHhhCCCEEEEeceec--ee-----ecCCCCEEEEEECCHH
Confidence 01111111 223344444444 4556778999983111 00 1122456899999998
Q ss_pred hhhcc--------CCCCCHHHHHHHHHHHH--HHhHHHHHHhhhCCCEEEEECCC-CHHHHHHHHHHHHHHHH
Q psy11031 346 VLHKG--------QIDNSVSAFRRRLELFR--ERTLPMLRAMDVETRLTIVDGDT-QLPQVREEFERVLKKII 407 (520)
Q Consensus 346 ~~~r~--------R~dD~~e~~~~Rl~~f~--~~~~~l~~~y~~~~~l~~IDa~~-~~e~V~~~I~~~I~~~i 407 (520)
.+.++ +...+.+.+.+++.... .....+ ..|......++||.+. +++++.+.|.+.+...+
T Consensus 175 ~r~~R~~~~l~~~~~~~~~~~~~~~i~~rd~~~~~r~~-~pl~~~~d~~~Idts~~~~eev~~~I~~~i~~~~ 246 (252)
T 4e22_A 175 ERAHRRMLQLQERGFNVNFERLLAEIQERDNRDRNRSV-APLVPAADALVLDSTSMSIEQVIEQALAYAQRIL 246 (252)
T ss_dssp HHHHHHHHHHHHHTCCCCHHHHHHHHC-------------CCCCCTTEEEEECSSSCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhccc-cchhccCCeEEEECcCCCHHHHHHHHHHHHHHHh
Confidence 75322 22334555444442211 111111 1222212246788776 89999999998887654
No 97
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=98.88 E-value=3.2e-10 Score=107.42 Aligned_cols=163 Identities=12% Similarity=0.189 Sum_probs=88.0
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcc-hHHHHhhhhc--CCccchHHHHHHHH--H--
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGL-NSRIKSSVSA--GDFVNRDVVLDIVY--A-- 299 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~-g~~i~~~l~~--G~~vPd~lv~~ll~--~-- 299 (520)
+|+|.|++||||||+|++|++.+ +..++++. +++ +...+++. ++.++..+.. |...++.....++. .
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l-~~~g~~v~-~~~----~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~r~ 75 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF-RAAGRSVA-TLA----FPRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRA 75 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH-HEEEEEEE-EEE----SSEEEEEEEEEEHHHHEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH-HhcCCeEE-EEe----ecCCCCcchhhHHHHHHcccccccCCCHhHHHHHHHHHHh
Confidence 68999999999999999999986 65544442 222 11112333 5555555432 22222333322221 1
Q ss_pred ----HHhccccCCCcEEEEeCCCCCH-----------------HHHHHHHh---hcCCCCCEEEecCChhhhh-----cc
Q psy11031 300 ----EMKKTKYTEADGIVIDGFPREM-----------------SQLIDFEN---KYQIHPPMILIDCSKLVLH-----KG 350 (520)
Q Consensus 300 ----~l~~~~~~~~~G~ILDGFPrt~-----------------~Qae~l~~---~~~~p~~VI~Ld~~~~~~~-----r~ 350 (520)
.+.. ....+..+|+|||+.+. +++..+.. .+..++.+|+|+++++.+. |.
T Consensus 76 ~~~~~i~~-~l~~g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~ 154 (214)
T 1gtv_A 76 GAVHTIQG-LCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRA 154 (214)
T ss_dssp EEHHHHHH-EEEEEEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEEHHHHHHHHHHHH
T ss_pred hhHHHHHH-HhhCCCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCCHHHHHHHHHccc
Confidence 1221 12234678999998653 12222221 1124677999999987532 11
Q ss_pred C-----CCCC---HHHHHHHHH-HHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHH
Q psy11031 351 Q-----IDNS---VSAFRRRLE-LFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFER 401 (520)
Q Consensus 351 R-----~dD~---~e~~~~Rl~-~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~ 401 (520)
+ ..+. ...+.+|+. .|.+ +.+.|. ...+++||++.++++|+++|.+
T Consensus 155 ~~~~~~~~d~~e~~~~~~~~~~~~~~~----~~~~~~-~~~~~vId~~~~~~~v~~~i~~ 209 (214)
T 1gtv_A 155 QRDPGRARDNYERDAELQQRTGAVYAE----LAAQGW-GGRWLVVGADVDPGRLAATLAP 209 (214)
T ss_dssp HEBBEEEEEEEEEEHHHHHHHHHHHHH----HHHEEE-EEEEEEEEEEEBHHHHHHHHC-
T ss_pred ccccccccccccccHHHHHHHHHHHHH----HHHhCC-CCCEEEEeCCCCHHHHHHHhcC
Confidence 1 1121 124444443 2222 223332 1347889999999999988754
No 98
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.88 E-value=2.8e-08 Score=99.75 Aligned_cols=112 Identities=16% Similarity=0.189 Sum_probs=68.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCC-CCeeeehhhHHhhhhcccccCCcchHHHHhhhhcC----CccchHHHHHHHH
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYP-NWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAG----DFVNRDVVLDIVY 298 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~-g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G----~~vPd~lv~~ll~ 298 (520)
.|..|+|.|+|||||||+|+.|++++. ++.+||. |.+| ...... ...+..+.... ......+...++.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~-D~~R---~~~~~~---~~~~~~~~~~a~~~~~~~~~~~~~~~v~ 104 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN-DTFK---QQHPNF---DELVKLYEKDVVKHVTPYSNRMTEAIIS 104 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT-HHHH---TTSTTH---HHHHHHHGGGCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec-hHhH---Hhchhh---HHHHHHccchhhhhhhHHHHHHHHHHHH
Confidence 468899999999999999999999853 6788886 5566 322111 11111111100 0111122334444
Q ss_pred HHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcC---CCCCEEEecCChhhh
Q psy11031 299 AEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQ---IHPPMILIDCSKLVL 347 (520)
Q Consensus 299 ~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~---~p~~VI~Ld~~~~~~ 347 (520)
..+. .+..||||+.+++..+...+.+.+. .+..++++.+|++..
T Consensus 105 ~~l~-----~g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~ 151 (287)
T 1gvn_B 105 RLSD-----QGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINS 151 (287)
T ss_dssp HHHH-----HTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHH
T ss_pred HHHh-----cCCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHH
Confidence 4444 3578999999998776655544432 223478899998754
No 99
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.88 E-value=5.3e-09 Score=97.33 Aligned_cols=158 Identities=13% Similarity=0.162 Sum_probs=84.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCC-----CeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchH---HHH
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPN-----WTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRD---VVL 294 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g-----~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~---lv~ 294 (520)
..+.+|+|+|+|||||||+++.|++.+ + +.+++ ++.++ .....+.. ..+.+ .+.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l-~~~~~~~~~~~-~d~~~---~~~~~~~~-------------~~~~~r~~~~~ 72 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLL-QKEGYRVEVLD-GDWAR---TTVSEGAG-------------FTREERLRHLK 72 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH-HHTTCCEEEEE-HHHHH---TTTTTTCC-------------CCHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH-HhcCCeEEEee-HHHHH---HHHhhccC-------------CChhhHHHHHH
Confidence 357889999999999999999999875 3 23444 45556 33221110 11111 111
Q ss_pred HHH--HHHHhccccCCCcEEEEeCCCCCHH---HHHHHHhhcCCCCCEEEecCChhhhhccCCCCCHHHHHHHHH-HHHH
Q psy11031 295 DIV--YAEMKKTKYTEADGIVIDGFPREMS---QLIDFENKYQIHPPMILIDCSKLVLHKGQIDNSVSAFRRRLE-LFRE 368 (520)
Q Consensus 295 ~ll--~~~l~~~~~~~~~G~ILDGFPrt~~---Qae~l~~~~~~p~~VI~Ld~~~~~~~r~R~dD~~e~~~~Rl~-~f~~ 368 (520)
.+. ...+. ..+..+|+|++..... +...+....+.+..+|||+|+.+.+.++-. .. +..+.. ...+
T Consensus 73 ~~~~~~~~~~----~~g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~---~~-~~~~~~~~~~~ 144 (186)
T 2yvu_A 73 RIAWIARLLA----RNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDP---KG-LYKKALKGELE 144 (186)
T ss_dssp HHHHHHHHHH----TTTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCH---HH-HHHHHHTTCCS
T ss_pred HHHHHHHHHH----hCCCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhh---hh-hhhHHhhcchh
Confidence 111 11112 2344567788654433 233333333346679999999987533210 00 111110 0000
Q ss_pred HhHHHHHHhhh-CCCEEEEECC-CCHHHHHHHHHHHHHHH
Q psy11031 369 RTLPMLRAMDV-ETRLTIVDGD-TQLPQVREEFERVLKKI 406 (520)
Q Consensus 369 ~~~~l~~~y~~-~~~l~~IDa~-~~~e~V~~~I~~~I~~~ 406 (520)
....+.+.|.. ....++||++ .+++++.+.|.+.|...
T Consensus 145 ~~~~~~~~y~~~~~~~~~Id~~~~~~~ev~~~I~~~l~~~ 184 (186)
T 2yvu_A 145 NFTGITDPYEPPENPQLVLDTESNTIEHNVSYLYSLVKAV 184 (186)
T ss_dssp SCHHHHSCCCCCSSCSEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcccCCCCCcEEEECCCCCHHHHHHHHHHHHHHh
Confidence 11122334542 1234789998 89999999998888654
No 100
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=98.79 E-value=5.2e-08 Score=92.78 Aligned_cols=164 Identities=11% Similarity=0.026 Sum_probs=92.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhccc-ccCCcchHHHHhhhhcCCccc--------------
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIE-DDGEGLNSRIKSSVSAGDFVN-------------- 289 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~-~~~t~~g~~i~~~l~~G~~vP-------------- 289 (520)
.++|.|.|++||||||+++.||+++ |+.+++ +++++ ... ..+-.. ..+.. .|+..+
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~l-g~~~~D-~~~~~---~~a~~~g~~~-~~~~~---~~e~~~~~~~~~~~~~~~~~ 76 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHY-NIPLYS-KELLD---EVAKDGRYSK-EVLER---FDEKPMNFAFIPVPAGGTTI 76 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHT-TCCEEC-HHHHH---HTTCC----------------------------------
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHh-CcCEEC-HHHHH---HHHHhcCCCH-HHHHH---HhhhchhHHHHHhccccccc
Confidence 4689999999999999999999997 999999 99998 322 111110 11111 111111
Q ss_pred --hHHHHHHHHHHHhccccC--CCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhcc---CCCCCHHHHHHH
Q psy11031 290 --RDVVLDIVYAEMKKTKYT--EADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHKG---QIDNSVSAFRRR 362 (520)
Q Consensus 290 --d~lv~~ll~~~l~~~~~~--~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r~---R~dD~~e~~~~R 362 (520)
.+-+.+...+.+. ... ...++||+|- .-. -.|... ....+|||++|.+.+.++ +..-+.+...++
T Consensus 77 ~~~~~~~~~~~~~i~--~la~~~~~~~Vi~Gr--~g~--~vl~~~--~~~~~V~L~A~~e~r~~R~~~~~~~~~~~~~~~ 148 (201)
T 3fdi_A 77 SLEQDIAIRQFNFIR--KKANEEKESFVIVGR--CAE--EILSDN--PNMISAFILGDKDTKTKRVMEREGVDEKTALNM 148 (201)
T ss_dssp ---CHHHHHHHHHHH--HHHHTSCCCEEEEST--THH--HHTTTC--TTEEEEEEEECHHHHHHHHHHHHTCCHHHHHHH
T ss_pred cccHHHHHHHHHHHH--HHHhhcCCCEEEEEC--Ccc--hhcCCC--CCeEEEEEECCHHHHHHHHHHHhCCCHHHHHHH
Confidence 1122234444444 344 4567999985 111 111110 123589999999875432 112234455555
Q ss_pred HHHHHHHhHHHHHHhhhC------CCEEEEECC-CCHHHHHHHHHHHHHH
Q psy11031 363 LELFRERTLPMLRAMDVE------TRLTIVDGD-TQLPQVREEFERVLKK 405 (520)
Q Consensus 363 l~~f~~~~~~l~~~y~~~------~~l~~IDa~-~~~e~V~~~I~~~I~~ 405 (520)
+..-.+...+..++|... ..-++||.+ .+++++.+.|...+..
T Consensus 149 i~~~d~~R~~~y~~~~~~~~~~~~~~dl~Idt~~l~~eevv~~I~~~i~~ 198 (201)
T 3fdi_A 149 MKKMDKMRKVYHNFYCESKWGDSRTYDICIKIGKVDVDTATDMIIKYIDS 198 (201)
T ss_dssp HHHHHHHHHHHHHHHCSSCTTBGGGCSEEEEESSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcccCCEEEECCCCCHHHHHHHHHHHHHH
Confidence 555444445555544111 122568876 5899999998877653
No 101
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.77 E-value=2.6e-08 Score=93.48 Aligned_cols=164 Identities=15% Similarity=0.229 Sum_probs=75.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcc--------hHHHHhhhhcCCccchH---
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGL--------NSRIKSSVSAGDFVNRD--- 291 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~--------g~~i~~~l~~G~~vPd~--- 291 (520)
..+.+|+|+|++||||||+++.|++.+..-.+++++...+ ... .+... ...+...+..|..+...
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTR---QMR-EGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYV 79 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECS---CCC-TTCCBTTTBEECCHHHHHHHHHTTCEEEEEEET
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccC---CCC-CCccCCCceEEcCHHHHHHHHHcCCeEEEEeEC
Confidence 3467899999999999999999998752223334444433 110 00000 11222333333322211
Q ss_pred -----HHHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEec--CChhhh-h--ccCCCCCHHHHHH
Q psy11031 292 -----VVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILID--CSKLVL-H--KGQIDNSVSAFRR 361 (520)
Q Consensus 292 -----lv~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld--~~~~~~-~--r~R~dD~~e~~~~ 361 (520)
...+.+...+. .+..+|+|+.+....+. ...+ ++.++++. ++.+.+ . ..|.+++.+.+.+
T Consensus 80 ~~~~g~~~~~i~~~l~-----~g~~vv~d~~~~~~~~~---~~~~--~~~~~i~~~~~~~~~~~~Rl~~R~~~~~~~~~~ 149 (207)
T 2j41_A 80 GNYYGTPVQYVKDTMD-----EGHDVFLEIEVEGAKQV---RKKF--PDALFIFLAPPSLEHLRERLVGRGTESDEKIQS 149 (207)
T ss_dssp TEEEEEEHHHHHHHHH-----TTCEEEEECCGGGHHHH---HHHC--TTSEEEEEECCC---------------------
T ss_pred CeecCCCHHHHHHHHH-----cCCeEEEEECHHHHHHH---HHhc--CCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHH
Confidence 01123334444 35789999976654443 3333 24333333 443332 2 2455566777888
Q ss_pred HHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHH
Q psy11031 362 RLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKII 407 (520)
Q Consensus 362 Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i 407 (520)
|+..+.... ++|...+ ++ |+.+ ++++++++|.+.|....
T Consensus 150 rl~~~~~~~----~~~~~~d-~v-I~n~-~~e~~~~~i~~~l~~~~ 188 (207)
T 2j41_A 150 RINEARKEV----EMMNLYD-YV-VVND-EVELAKNRIQCIVEAEH 188 (207)
T ss_dssp ------CGG----GGGGGCS-EE-EECS-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----hccccCC-EE-EECC-CHHHHHHHHHHHHHHhh
Confidence 888766442 3444433 44 5555 89999999998887644
No 102
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.76 E-value=5.8e-08 Score=94.23 Aligned_cols=140 Identities=15% Similarity=0.080 Sum_probs=92.9
Q ss_pred cCcccCcHHHHHHHHHHccCCCCCCCCHHHHHHH-HHHHHhcC-----C---CCCcEEEe----------CCCCCHHhHH
Q psy11031 13 DFPSHRNPLKMFNLFVSEEVKDFSFLSSKTVTEV-LMLEMKMS-----P---AAKAFLIS----------GYPRNMRDVV 73 (520)
Q Consensus 13 ~~~~h~s~G~~l~~~i~~G~~~g~lVPdelv~~l-l~~~l~~~-----~---~~~G~ILD----------GFPRt~~QA~ 73 (520)
..|..+..|..+++++.+|. .+++....-+ ...+.... + ..+.+|+| ||||++.|+.
T Consensus 60 ~~p~~~~~g~~i~~~~~~~~----~~~~~~~~ll~~a~r~~~~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~ 135 (229)
T 4eaq_A 60 REPGGVPTGEEIRKIVLEGN----DMDIRTEAMLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEE 135 (229)
T ss_dssp CTTTTCHHHHHHHHHTTC-------CCHHHHHHHHHHHHHHHCCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHH
T ss_pred cCCCCCchHHHHHHHHhCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHH
Confidence 45667788999999999887 5444433222 12233211 1 24568999 9999998873
Q ss_pred -----HHHHhcCCcCEEEEEEcCHHHHHHHh-hhCccCCccc--hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCC
Q psy11031 74 -----EYSDKIKTINGVILIAWRQSLLERQI-DYGAKLGHVI--LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERN 145 (520)
Q Consensus 74 -----~~~~~~~~pd~VI~L~~pd~~l~~Rl-~rg~~~~r~d--~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~ 145 (520)
.+......||+||+|++|.+++.+|+ .|+....|.+ ...+.+|+..+.... .+.|. +.++.|||+++
T Consensus 136 ~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~dr~e~~~~~~~~rv~~~y~~l---~~~~~--~~~~vIDa~~s 210 (229)
T 4eaq_A 136 VRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLKFHEKVIEGYQEI---IHNES--QRFKSVNADQP 210 (229)
T ss_dssp HHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHH---TTTCT--TTEEEEETTSC
T ss_pred HHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHH---HHhCC--CCEEEEeCCCC
Confidence 22334468999999999999999999 4554445654 445667776654433 23343 45899999999
Q ss_pred hHHHHHHHHHHHHHHh
Q psy11031 146 PVEVYADFRTAVLKIL 161 (520)
Q Consensus 146 ~eeV~~~i~~~l~~~~ 161 (520)
+++|+++|.+.|...+
T Consensus 211 ~eev~~~I~~~l~~~l 226 (229)
T 4eaq_A 211 LENVVEDTYQTIIKYL 226 (229)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998876
No 103
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.73 E-value=4.2e-08 Score=94.82 Aligned_cols=76 Identities=18% Similarity=0.288 Sum_probs=34.7
Q ss_pred cCCCCCEEEecCChhhh-----hccCCCCCHH--HHHHHHHHHHHHhHHHHHHh-hhCCCEEEEECCCCHHHHHHHHHHH
Q psy11031 331 YQIHPPMILIDCSKLVL-----HKGQIDNSVS--AFRRRLELFRERTLPMLRAM-DVETRLTIVDGDTQLPQVREEFERV 402 (520)
Q Consensus 331 ~~~p~~VI~Ld~~~~~~-----~r~R~dD~~e--~~~~Rl~~f~~~~~~l~~~y-~~~~~l~~IDa~~~~e~V~~~I~~~ 402 (520)
...|+.+|+|+||++.+ .|+|.++..+ .+.+|+..++.... ..|| .....+++|||++++++|+++|.+.
T Consensus 144 ~~~pD~vi~Ld~~~e~~~~Ri~~R~r~~e~~~~~~~~~rv~~~~~~~~--~~~~~~~~~~~~vId~~~~~eev~~~I~~~ 221 (230)
T 2vp4_A 144 HVQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWL--IHQRRPQSCKVLVLDADLNLENIGTEYQRS 221 (230)
T ss_dssp CCCCSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHH--TSCCSSCCCEEEEEECCC------------
T ss_pred cCCCCEEEEEeCCHHHHHHHHHHcCCcccccCcHHHHHHHHHHHHHHH--HHhcccCCCCEEEEECCCCHHHHHHHHHHH
Confidence 34577899999999763 2345434321 45666665554431 1222 3345688999999999999999988
Q ss_pred HHHHHH
Q psy11031 403 LKKIID 408 (520)
Q Consensus 403 I~~~i~ 408 (520)
+...+.
T Consensus 222 l~~~~~ 227 (230)
T 2vp4_A 222 ESSIFD 227 (230)
T ss_dssp ------
T ss_pred HHHHhh
Confidence 876543
No 104
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.71 E-value=2.3e-08 Score=98.15 Aligned_cols=113 Identities=12% Similarity=0.140 Sum_probs=65.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCC-eeeehhhHHhhhhccccc----CCcchHHHHhhhhcCCccchHHHHHHH
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNW-TQISLGKLLRYFANIEDD----GEGLNSRIKSSVSAGDFVNRDVVLDIV 297 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~-~~is~gdLlr~~~~~~~~----~t~~g~~i~~~l~~G~~vPd~lv~~ll 297 (520)
..|.+|+|+|+|||||||+|+.|++++ +. .++..+|.+| ..... ....|..+.++... ....++..++
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l-~~~~~~~~~D~~r---~~~~~~~~i~~~~g~~~~~~~~~---~~~~~~~~~~ 102 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEF-QGNIVIIDGDSFR---SQHPHYLELQQEYGKDSVEYTKD---FAGKMVESLV 102 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHT-TTCCEEECGGGGG---TTSTTHHHHHTTCSSTTHHHHHH---HHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhc-CCCcEEEecHHHH---HhchhHHHHHHHcCchHHHHhhH---HHHHHHHHHH
Confidence 457899999999999999999999997 53 2334456666 32211 01122212222110 0012223333
Q ss_pred HHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCC---CCCEEEecCChhhh
Q psy11031 298 YAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQI---HPPMILIDCSKLVL 347 (520)
Q Consensus 298 ~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~---p~~VI~Ld~~~~~~ 347 (520)
...+. .+.+|||||++++..+...+...+.. .-.+++++|+.+.+
T Consensus 103 ~~~~~-----~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~ 150 (253)
T 2p5t_B 103 TKLSS-----LGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELS 150 (253)
T ss_dssp HHHHH-----TTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHH
T ss_pred HHHHh-----cCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHH
Confidence 33222 34589999999988776655544322 22356789887653
No 105
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=98.66 E-value=3.6e-07 Score=87.79 Aligned_cols=165 Identities=9% Similarity=0.149 Sum_probs=102.4
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhh------cCCccch----------
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS------AGDFVNR---------- 290 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~------~G~~vPd---------- 290 (520)
-|-|.|+.||||||+|+.|++ + |+++++++.+.+ +....+++.-..|.+.+. +|. +.-
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~-g~~vidaD~ia~---~l~~~~~~~~~~i~~~fG~~~~~~dg~-ldR~~L~~~vF~d 84 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-R-GASLVDTDLIAH---RITAPAGLAMPAIEQTFGPAFVAADGS-LDRARMRALIFSD 84 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-T-TCEEEEHHHHHH---HHTSTTCTTHHHHHHHHCGGGBCTTSS-BCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHH-C-CCcEEECcHHHH---HHhcCCcHHHHHHHHHhChhhcCCCCC-CcHHHHHHHHhCC
Confidence 489999999999999999987 6 999999999998 555555554455544432 232 111
Q ss_pred --------HHHHHHHHHHHhccc-cCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-c--cCCCCCHHH
Q psy11031 291 --------DVVLDIVYAEMKKTK-YTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-K--GQIDNSVSA 358 (520)
Q Consensus 291 --------~lv~~ll~~~l~~~~-~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r--~R~dD~~e~ 358 (520)
.++..++..++.+.- .....-+|+|. |-=.+.. .+.. ..+.||+++||++... | .|...+.+.
T Consensus 85 ~~~~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~-pLL~E~~-~~~~---~~D~vi~V~ap~e~r~~Rl~~Rdg~s~ee 159 (210)
T 4i1u_A 85 EDARRRLEAITHPLIRAETEREARDAQGPYVIFVV-PLLVESR-NWKA---RCDRVLVVDCPVDTQIARVMQRNGFTREQ 159 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCSSSEEEEC-TTCTTCH-HHHH---HCSEEEEEECCHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCCEEEEEE-ecccccC-Cccc---cCCeEEEEECCHHHHHHHHHhcCCCCHHH
Confidence 222233333332100 11233477886 3221101 1222 2578999999998642 2 454567888
Q ss_pred HHHHHHHHHHHhHHHHHHhhhCCCEEEEECC-CCHHHHHHHHHHHHHHHHH
Q psy11031 359 FRRRLELFRERTLPMLRAMDVETRLTIVDGD-TQLPQVREEFERVLKKIID 408 (520)
Q Consensus 359 ~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~-~~~e~V~~~I~~~I~~~i~ 408 (520)
+.+|+... .+..+.++..+ ++||.+ .+.+++.+++...+...+.
T Consensus 160 a~~ri~~Q----~~~eek~~~AD--~VIdN~~gsle~l~~qV~~l~~~~~~ 204 (210)
T 4i1u_A 160 VEAIIARQ----ATREARLAAAD--DVIVNDAATPDALAVQVDALHQRYLA 204 (210)
T ss_dssp HHHHHHHS----CCHHHHHHTCS--EEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHc----CChHHHHHhCC--EEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 88877632 23344444333 467999 8999999999988876544
No 106
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.63 E-value=1.1e-07 Score=92.73 Aligned_cols=173 Identities=16% Similarity=0.171 Sum_probs=92.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhh-cccccCCcch--HHHHhhhh----------------
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFA-NIEDDGEGLN--SRIKSSVS---------------- 283 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~-~~~~~~t~~g--~~i~~~l~---------------- 283 (520)
.++.+|+|.|++||||||+|+.|++++ |+.+++.|.++|... .....+.... ..+.+.+.
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~l-g~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~ 85 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARAL-GARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAF 85 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHH-TCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh-CCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEE
Confidence 357899999999999999999999997 999999999988311 0011121111 11111111
Q ss_pred -cCCccch-----------------HHHHHHHHHHHhccccCCC-cEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCCh
Q psy11031 284 -AGDFVNR-----------------DVVLDIVYAEMKKTKYTEA-DGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSK 344 (520)
Q Consensus 284 -~G~~vPd-----------------~lv~~ll~~~l~~~~~~~~-~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~ 344 (520)
.|+.+.+ ..+.+.|..... ..... .++|+||=... . -.+...+.-|||+++.
T Consensus 86 l~g~~v~~~ir~~~v~~~~s~va~~~~vr~~l~~~qr--~~a~~~~~~V~~GRd~g--t-----~V~pda~lkifl~A~~ 156 (233)
T 3r20_A 86 LAGEDVSSEIRGDAVTGAVSAVSAVPAVRTRLVDIQR--KLATEGGRVVVEGRDIG--T-----VVLPDADVKIFLTASA 156 (233)
T ss_dssp ETTEECTTGGGSHHHHHHHHHHHTCHHHHHHHHHHHH--HHHTSSSCEEEEESSCC--C-----CCCTTCSEEEEEECCH
T ss_pred ECCeehhhhhcchHHHHHHHHHhcchHHHHHHHHHHH--HHHHhcCcEEEecccce--e-----EEcCCCCEEEEEECCH
Confidence 1222211 112233322222 22344 78999983111 0 0112224569999999
Q ss_pred hhhhccC--------CCCCHHHHHHHHHHHHHHhHHHHHHhhh---CCCEEEEECC-CCHHHHHHHHHHHHHHHH
Q psy11031 345 LVLHKGQ--------IDNSVSAFRRRLELFRERTLPMLRAMDV---ETRLTIVDGD-TQLPQVREEFERVLKKII 407 (520)
Q Consensus 345 ~~~~r~R--------~dD~~e~~~~Rl~~f~~~~~~l~~~y~~---~~~l~~IDa~-~~~e~V~~~I~~~I~~~i 407 (520)
+.+.++| ..-+.+.+.+.+...-..-.. .+... ....+.||.+ .+++++.+.|...+...+
T Consensus 157 e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~--r~~~pl~~~~dal~IDTs~l~iee~v~~I~~~i~~~~ 229 (233)
T 3r20_A 157 EERARRRNAQNVANGLPDDYATVLADVQRRDHLDST--RPVSPLRAADDALVVDTSDMDQAQVIAHLLDLVTAQA 229 (233)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH--SCSSCCSCCTTSEEEECTTSCHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhh--ccccccccccCcEEEECCCCCHHHHHHHHHHHHHHhh
Confidence 8754332 233555555555443322111 11111 1112678966 599999999988876544
No 107
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=98.62 E-value=4.2e-07 Score=82.00 Aligned_cols=143 Identities=9% Similarity=0.007 Sum_probs=98.4
Q ss_pred ccCcccCcHHHHHHHHHHccCCC-----------CCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHhcC
Q psy11031 12 LDFPSHRNPLKMFNLFVSEEVKD-----------FSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIK 80 (520)
Q Consensus 12 ~~~~~h~s~G~~l~~~i~~G~~~-----------g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~~~ 80 (520)
++++ ++++|+.++..+..+... ....+++.+.+++.+.+.. ....+||+||| ++..|+..+.....
T Consensus 24 ~g~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~vi~dg~-~~~~~~~~l~~~~~ 100 (179)
T 3lw7_A 24 RGAK-VIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLCVEELGT-SNHDLVVFDGV-RSLAEVEEFKRLLG 100 (179)
T ss_dssp TTCE-EEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHHHHHHHCS-CCCSCEEEECC-CCHHHHHHHHHHHC
T ss_pred CCCc-EEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHHHHHHHHh-cCCCeEEEeCC-CCHHHHHHHHHHhC
Confidence 3566 888898888776543100 0013456666777777753 45789999999 99999977777666
Q ss_pred CcCEEEEEEcCHHHHHHHhh-hCccCCccchHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHHHHH
Q psy11031 81 TINGVILIAWRQSLLERQID-YGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLK 159 (520)
Q Consensus 81 ~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l~~ 159 (520)
.++.+|+|++|.+++.+|+. |+........+.+.+|+..+.+ .++..++.... +.||++.+++++.++|.+++..
T Consensus 101 ~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~~--~~~~~~~~~ad--~vId~~~~~~~~~~~i~~~l~~ 176 (179)
T 3lw7_A 101 DSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRDREELK--LGIGEVIAMAD--YIITNDSNYEEFKRRCEEVTDR 176 (179)
T ss_dssp SCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHHHHHHHH--HTHHHHHHTCS--EEEECCSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHHHHhhhc--cChHhHHHhCC--EEEECCCCHHHHHHHHHHHHHH
Confidence 88999999999999999994 4322112346667777744332 23444554442 5678888999999999999987
Q ss_pred Hh
Q psy11031 160 IL 161 (520)
Q Consensus 160 ~~ 161 (520)
.+
T Consensus 177 ~l 178 (179)
T 3lw7_A 177 VL 178 (179)
T ss_dssp HC
T ss_pred Hh
Confidence 54
No 108
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.61 E-value=5e-07 Score=82.77 Aligned_cols=37 Identities=14% Similarity=0.200 Sum_probs=30.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCee--eehhhHHh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQ--ISLGKLLR 262 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~--is~gdLlr 262 (520)
+..|+|.|+|||||||+|+.|++++ +... ++.+++..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l-~~~~~~~~~D~~~~ 41 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL-PEPWLAFGVDSLIE 41 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS-SSCEEEEEHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc-CCCeEEeccchHhh
Confidence 5689999999999999999999996 6554 45666554
No 109
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=98.59 E-value=2e-07 Score=88.26 Aligned_cols=39 Identities=21% Similarity=0.422 Sum_probs=36.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR 262 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr 262 (520)
....+|.|.|++||||||+|+.|++.+ |+.+++++++.+
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~l-g~~vid~D~~~~ 48 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKY-GAHVVNVDRIGH 48 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHH-CCEEEEHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhc-CCEEEECcHHHH
Confidence 345789999999999999999999997 999999999988
No 110
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=98.55 E-value=4.6e-07 Score=87.84 Aligned_cols=73 Identities=14% Similarity=0.235 Sum_probs=43.6
Q ss_pred CCCCEEEecCChhhh-----hccCCCCCH--HHHHHHHHHHHHHhH-----HH-HHHhhhCCCEEEEECCCCHHHHHHHH
Q psy11031 333 IHPPMILIDCSKLVL-----HKGQIDNSV--SAFRRRLELFRERTL-----PM-LRAMDVETRLTIVDGDTQLPQVREEF 399 (520)
Q Consensus 333 ~p~~VI~Ld~~~~~~-----~r~R~dD~~--e~~~~Rl~~f~~~~~-----~l-~~~y~~~~~l~~IDa~~~~e~V~~~I 399 (520)
.|+.+|+|+|+.+.+ .|+|..+.. ..+..++...+.... |+ +++| ....+++|||+.++++|++.+
T Consensus 149 ~pd~~i~l~~~~~~~~~R~~~R~r~~e~~~~~~~~~~v~~~y~~~~~~~~~p~~~~~~-~~~~~~~Id~~~~~~~v~~~i 227 (241)
T 2ocp_A 149 TLHGFIYLQASPQVCLKRLYQRAREEEKGIELAYLEQLHGQHEAWLIHKTTKLHFEAL-MNIPVLVLDVNDDFSEEVTKQ 227 (241)
T ss_dssp CCCEEEEEECCHHHHHHHHHHSCCTTTTTCCHHHHHHHHHHHHHHHTSCCSCCCCTTG-GGCCEEEEECCSCTTTCHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHhcCCcccccCCHHHHHHHHHHHHHHHhhcccccccccc-CCCCEEEEECCCChhhCHHHH
Confidence 578899999998753 244544331 233333333222211 10 1123 345789999999999998888
Q ss_pred HHHHHHH
Q psy11031 400 ERVLKKI 406 (520)
Q Consensus 400 ~~~I~~~ 406 (520)
...+...
T Consensus 228 ~~i~~~i 234 (241)
T 2ocp_A 228 EDLMREV 234 (241)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777654
No 111
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=98.53 E-value=4.7e-07 Score=87.71 Aligned_cols=171 Identities=10% Similarity=0.120 Sum_probs=93.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCc------chHHHHh-hh---hcC--------
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEG------LNSRIKS-SV---SAG-------- 285 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~------~g~~i~~-~l---~~G-------- 285 (520)
...+|.|.|++||||||+++.|++++ |+.+++ ++++++.+ ...+-. .++.... ++ ..+
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~l-g~~~~d-~~~~~~~a--~~~g~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~ 88 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEEL-GIHFYD-DDILKLAS--EKSAVGEQFFRLADEKAGNNLLYRLGGGRKIDLHSK 88 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHH-TCEEEC-HHHHHHHH--HCC---------------------------------
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHc-CCcEEc-HHHHHHHH--HHcCCCHHHHHHHHhhccccHHHHHhcccccccccc
Confidence 35789999999999999999999997 999999 88887321 111111 1111111 00 000
Q ss_pred -----CccchHHHHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCC-C-CCEEEecCChhhhhcc---CCCCC
Q psy11031 286 -----DFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQI-H-PPMILIDCSKLVLHKG---QIDNS 355 (520)
Q Consensus 286 -----~~vPd~lv~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~-p-~~VI~Ld~~~~~~~r~---R~dD~ 355 (520)
....++-+.....+.+. ......++||+|-= -.. .|. .... + ..+|||++|.+.+.++ +..-.
T Consensus 89 ~~~~~~~~~~~~~f~~~~~~i~--~la~~~~~Vi~Grg--gg~--vl~-~~~~~~~~~~VfL~A~~e~r~~Ri~~~~~~~ 161 (223)
T 3hdt_A 89 PSPNDKLTSPENLFKFQSEVMR--ELAESEPCIFVGRA--AGY--VLD-QDEDIERLIRIFVYTDKVKKVQRVMEVDCID 161 (223)
T ss_dssp ---------HHHHHHHHHHHHH--HHHHHSCEEEESTT--HHH--HHH-HCTTCCEEEEEEEECCHHHHHHHHHHHHTCC
T ss_pred cccccccccHHHHHHHHHHHHH--HHHhCCCEEEEeCC--cch--hcc-cccCCCCeEEEEEECCHHHHHHHHHHhcCCC
Confidence 11112223333334443 23234578898762 111 120 0011 2 3589999999865321 11223
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhh------CCCEEEEECC-CCHHHHHHHHHHHHHH
Q psy11031 356 VSAFRRRLELFRERTLPMLRAMDV------ETRLTIVDGD-TQLPQVREEFERVLKK 405 (520)
Q Consensus 356 ~e~~~~Rl~~f~~~~~~l~~~y~~------~~~l~~IDa~-~~~e~V~~~I~~~I~~ 405 (520)
.+...+++..-.+...+..++|.. ...-++||.+ .+++++.+.|...+..
T Consensus 162 ~~~a~~~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~IdT~~l~~eevv~~I~~~i~~ 218 (223)
T 3hdt_A 162 EERAKRRIKKIEKERKEYYKYFTGSEWHSMKNYDLPINTTKLTLEETAELIKAYIRL 218 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCTTCGGGCSEEEECTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 455566666655565666665421 1122568876 5899999998887753
No 112
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.51 E-value=9.7e-07 Score=82.59 Aligned_cols=161 Identities=16% Similarity=0.219 Sum_probs=87.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcch--------HHHHhhhhcCCccch-----
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLN--------SRIKSSVSAGDFVNR----- 290 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g--------~~i~~~l~~G~~vPd----- 290 (520)
.+.+|.|+||+||||||+++.|+..+ .-.+++...+.+ ... .+...+ .........+.....
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~-~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL-AEIKISISHTTR---PKR-PGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYE 80 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS-SSEEECCCEECS---CCC-TTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC-CCeEEeceeccC---CCc-hhHhcCceEEeccHHHHHHHHhcCcEEeeeeeec
Confidence 45789999999999999999999886 455555544433 111 010000 111111111110000
Q ss_pred ---HHHHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecC-Chhhhh---ccCCCCCHHHHHHHH
Q psy11031 291 ---DVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDC-SKLVLH---KGQIDNSVSAFRRRL 363 (520)
Q Consensus 291 ---~lv~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~-~~~~~~---r~R~dD~~e~~~~Rl 363 (520)
....+.+...+. .+..+|+|+.+....++. ..... ..+|++.. +.+.+. ..|..++.+.+++|+
T Consensus 81 ~~~~~~~~~i~~~l~-----~g~~vi~d~~~~~~~~~~---~~~~~-~~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl 151 (205)
T 3tr0_A 81 RHYGTEKDWVLRQLK-----AGRDVLLEIDWQGARQIR---ELFPP-ALSIFILPPSIEALRERLIKRRQDDTAIIEQRL 151 (205)
T ss_dssp EEEEEEHHHHHHHHH-----TTCEEEEECCHHHHHHHH---HHCTT-CEEEEEECSCHHHHHHHHHTCTTSCSSTHHHHH
T ss_pred ccccchHHHHHHHHH-----cCCeEEEEECHHHHHHHH---HhCCC-cEEEEEECcCHHHHHHHHHHhCCCCHHHHHHHH
Confidence 000112333344 356789999766655443 33332 34555554 454432 245556677788888
Q ss_pred HHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031 364 ELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK 405 (520)
Q Consensus 364 ~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~ 405 (520)
..+... .+++...+ ++ |+.+ +.+++++++...|..
T Consensus 152 ~~~~~~----~~~~~~~d-~v-i~n~-~~~~~~~~l~~~i~~ 186 (205)
T 3tr0_A 152 ALAREE----MAHYKEFD-YL-VVND-NFDQAVQNLIHIISA 186 (205)
T ss_dssp HHHHHH----HTTGGGCS-EE-EECS-SHHHHHHHHHHHHHH
T ss_pred HHHHHH----HhcccCCC-EE-EECC-CHHHHHHHHHHHHHH
Confidence 876433 34454433 34 3434 899999999888865
No 113
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.51 E-value=3.2e-07 Score=96.80 Aligned_cols=93 Identities=17% Similarity=0.193 Sum_probs=67.4
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHH
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEM 301 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l 301 (520)
...|.+|+|+|+|||||||+|+.|++.+ |+.+|+.+++ + . . ..+...+...+
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~-~~~~i~~D~~-~---~-------~----------------~~~~~~~~~~l 306 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA-GYVHVNRDTL-G---S-------W----------------QRCVSSCQAAL 306 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG-TCEECCGGGS-C---S-------H----------------HHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc-CcEEEccchH-H---H-------H----------------HHHHHHHHHHH
Confidence 4567899999999999999999999997 9999998664 2 0 0 11222333444
Q ss_pred hccccCCCcEEEEeCCCCCHHHHHHHHhhc---CCCCCEEEecCChhhh
Q psy11031 302 KKTKYTEADGIVIDGFPREMSQLIDFENKY---QIHPPMILIDCSKLVL 347 (520)
Q Consensus 302 ~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~---~~p~~VI~Ld~~~~~~ 347 (520)
. .+..+|||+...+..+...+.... +.+..+|+|+|+.+.+
T Consensus 307 ~-----~g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l 350 (416)
T 3zvl_A 307 R-----QGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQA 350 (416)
T ss_dssp H-----TTCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHH
T ss_pred h-----cCCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHH
Confidence 4 456899999988887766655432 3344689999998754
No 114
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.51 E-value=1.3e-06 Score=83.01 Aligned_cols=165 Identities=13% Similarity=0.191 Sum_probs=86.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccc---cCCc----chHHHHhhhhcCCccchH----
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIED---DGEG----LNSRIKSSVSAGDFVNRD---- 291 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~---~~t~----~g~~i~~~l~~G~~vPd~---- 291 (520)
..+.+|+|+||+||||||+++.|++.+..-...+.....| .... .+.. ........+..+..+-..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr---~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTR---LPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESS---CCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccc---cCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEcc
Confidence 4577899999999999999999999873213333322222 1100 0100 011222222222211100
Q ss_pred ----HHHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCC-hhhhh---ccCCCCCHHHHHHHH
Q psy11031 292 ----VVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCS-KLVLH---KGQIDNSVSAFRRRL 363 (520)
Q Consensus 292 ----lv~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~-~~~~~---r~R~dD~~e~~~~Rl 363 (520)
.-...+...+. .++.+|+|+.+.. +..+.+.+.. ..+||+..+ .+.+. +.|..++.+.+++|+
T Consensus 83 ~~yg~~~~~i~~~l~-----~g~~vild~~~~g---~~~~~~~~~~-~~~i~i~~ps~~~l~~Rl~~R~~~~~e~i~~Rl 153 (208)
T 3tau_A 83 NYYGTPLEYVEEKLA-----AGVDIFLEIEVQG---AMQVRKAMPE-GIFIFLTPPDLSELKNRIIGRGTESMEVVEERM 153 (208)
T ss_dssp EEEEEEHHHHHHHHH-----TTCCEEEECCHHH---HHHHHHHCTT-SEEEEEECTTTTTSSCC-------CCHHHHHHH
T ss_pred ccCCCcHHHHHHHHH-----cCCeEEEEeeHHH---HHHHHHhCCC-eEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHH
Confidence 00122333344 4678999996444 4444444432 346666654 44332 245556778899999
Q ss_pred HHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHH
Q psy11031 364 ELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKI 406 (520)
Q Consensus 364 ~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~ 406 (520)
+...... .++..-+ ++.+|. +.++.+++|.+.|...
T Consensus 154 ~~~~~e~----~~~~~~d-~vivN~--~~~~~~~~l~~~i~~~ 189 (208)
T 3tau_A 154 ETAKKEI----EMMASYD-YAVVND--VVANAVQKIKGIVETE 189 (208)
T ss_dssp HHHHHHH----HHGGGSS-EEEECS--SHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HhhccCC-EEEECc--CHHHHHHHHHHHHHHH
Confidence 8766432 3333222 444543 6999999998888663
No 115
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.45 E-value=7e-07 Score=82.28 Aligned_cols=39 Identities=21% Similarity=0.354 Sum_probs=30.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhC--CCCeeeeh-hhHHh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDY--PNWTQISL-GKLLR 262 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~--~g~~~is~-gdLlr 262 (520)
.+.+|+|+|++||||||+++.|++.+ .|+..+.+ ++.++
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~ 45 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR 45 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHH
Confidence 46789999999999999999999863 17666654 35565
No 116
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=98.43 E-value=7.4e-07 Score=97.27 Aligned_cols=164 Identities=15% Similarity=0.090 Sum_probs=84.7
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCCCC-----eeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHH
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNW-----TQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDI 296 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~-----~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~l 296 (520)
...+.+|+++|++||||||+|+.|++++ +. .+++ +|.++ +....+......-+.. .+ +.+..+
T Consensus 369 ~~~~~~I~l~G~~GsGKSTia~~La~~L-~~~G~~~~~ld-~D~ir---~~l~~~~~f~~~er~~-----~l--~~i~~~ 436 (546)
T 2gks_A 369 HKQGFCVWLTGLPCAGKSTIAEILATML-QARGRKVTLLD-GDVVR---THLSRGLGFSKEDRIT-----NI--LRVGFV 436 (546)
T ss_dssp GGCCEEEEEECSTTSSHHHHHHHHHHHH-HHTTCCEEEEC-HHHHH---HHTCTTCCSSHHHHHH-----HH--HHHHHH
T ss_pred cccceEEEccCCCCCCHHHHHHHHHHHh-hhcCCeEEEEC-chHhh---hhhcccccccHHHHHH-----HH--HHHHHH
Confidence 3457889999999999999999999986 53 4555 46667 3332211111100000 00 111222
Q ss_pred HHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCC-CEEEecCChhhhhccCCCCCH-HHHHHHHHHHHHHhHHHH
Q psy11031 297 VYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHP-PMILIDCSKLVLHKGQIDNSV-SAFRRRLELFRERTLPML 374 (520)
Q Consensus 297 l~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~-~VI~Ld~~~~~~~r~R~dD~~-e~~~~Rl~~f~~~~~~l~ 374 (520)
+...+. .+.++|+|+..-.......+.+.+..++ .+|+|+|+.+.+.++-..... .....++..+.....
T Consensus 437 ~~~~l~-----~G~~VI~d~~~~~~~~r~~~~~~l~~~d~~vV~L~~~~e~~~~Rl~r~~~~~~~~~~i~~~~~vr~--- 508 (546)
T 2gks_A 437 ASEIVK-----HNGVVICALVSPYRSARNQVRNMMEEGKFIEVFVDAPVEVCEERDVKGLYKKAKEGLIKGFTGVDD--- 508 (546)
T ss_dssp HHHHHH-----TTCEEEEECCCCCHHHHHHHHTTSCTTCEEEEEEECCGGGHHHHCCSSHHHHC------CCBTTTB---
T ss_pred HHHHHh-----CCCEEEEEcCCCCHHHHHHHHHHhhcCCEEEEEEeCCHHHHHHHhhccccccccHHHHHHHHhhhh---
Confidence 222222 4678999973322233334444444445 689999998865322111100 000011111110000
Q ss_pred HHhhhCCCEEEEECC-CCHHHHHHHHHHHHHH
Q psy11031 375 RAMDVETRLTIVDGD-TQLPQVREEFERVLKK 405 (520)
Q Consensus 375 ~~y~~~~~l~~IDa~-~~~e~V~~~I~~~I~~ 405 (520)
.|+.....-++||++ .+++++.++|...|..
T Consensus 509 ~~e~~~~adivIDts~~s~eev~~~I~~~L~~ 540 (546)
T 2gks_A 509 PYEPPVAPEVRVDTTKLTPEESALKILEFLKK 540 (546)
T ss_dssp CCCCCSSCSEEEETTTSCHHHHHHHHHHHHHH
T ss_pred ccccccCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 122111223679996 8999999999887753
No 117
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=98.37 E-value=2.6e-07 Score=100.26 Aligned_cols=141 Identities=18% Similarity=0.218 Sum_probs=77.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCe-----eeehhhHHhhhhcccccCCcchHHHHhhhhc-CC---ccchHHH
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWT-----QISLGKLLRYFANIEDDGEGLNSRIKSSVSA-GD---FVNRDVV 293 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~-----~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~-G~---~vPd~lv 293 (520)
..+.+|+|+|.|||||||+|++|++.+ ++. +++.+++.+ +... ... +.+++.. ++ .+...++
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L-~~~~~d~~v~s~D~~r~---~~~~-~~~----~~~~f~~~~~~~~~~re~~~ 103 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYL-NWIGVPTKVFNVGEYRR---EAVK-QYS----SYNFFRPDNEEAMKVRKQCA 103 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHH-HHTTCCEEEEEHHHHHH---HHHS-CCC----CGGGGCTTCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH-hhcCCCeEEecccHHHH---Hhcc-CCc----cccccCcccHHHHHHHHHHH
Confidence 456889999999999999999999875 543 467788665 2221 111 1122221 11 1112333
Q ss_pred HHHHHHHHhcccc--CCCcEEEEeCCCCCHHHHHHHHhhcCCCC-CE--EEecCCh-hhhh-----c--cCCC----CCH
Q psy11031 294 LDIVYAEMKKTKY--TEADGIVIDGFPREMSQLIDFENKYQIHP-PM--ILIDCSK-LVLH-----K--GQID----NSV 356 (520)
Q Consensus 294 ~~ll~~~l~~~~~--~~~~G~ILDGFPrt~~Qae~l~~~~~~p~-~V--I~Ld~~~-~~~~-----r--~R~d----D~~ 356 (520)
...+..... .. ..+..+|+|+...+..+.+.+.+.+.... .+ |.+.|++ +++. + .|++ +.+
T Consensus 104 ~~~l~~~~~--~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~~~rPdl~~~d~e 181 (520)
T 2axn_A 104 LAALRDVKS--YLAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVKISSPDYKDCNSA 181 (520)
T ss_dssp HHHHHHHHH--HHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHTTTSGGGTTSCHH
T ss_pred HHHHHHHHH--HHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhhhcCCccccCCHH
Confidence 333322211 11 35678999999988877766654332112 24 4455663 3321 1 2222 222
Q ss_pred ---HHHHHHHHHHHHHhHHHH
Q psy11031 357 ---SAFRRRLELFRERTLPML 374 (520)
Q Consensus 357 ---e~~~~Rl~~f~~~~~~l~ 374 (520)
+.+.+|+..|.....++.
T Consensus 182 ~~~~~~~~Ri~~y~~~Yepi~ 202 (520)
T 2axn_A 182 EAMDDFMKRISCYEASYQPLD 202 (520)
T ss_dssp HHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHhhhhhhcccC
Confidence 345677888877766654
No 118
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.36 E-value=4e-06 Score=78.96 Aligned_cols=160 Identities=17% Similarity=0.220 Sum_probs=93.5
Q ss_pred EEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcc--------hHHHHhhhhcCCccchHH-------
Q psy11031 228 VWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGL--------NSRIKSSVSAGDFVNRDV------- 292 (520)
Q Consensus 228 I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~--------g~~i~~~l~~G~~vPd~l------- 292 (520)
|+|.||+||||+|++++|.+++++..++++..--| .- ..+..- -+.....+.+|..+--..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR---~p-R~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YG 79 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTR---TP-RAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYG 79 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECS---CC-CTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEecc---CC-CCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceee
Confidence 88999999999999999998876556677765555 21 122211 235555566665433210
Q ss_pred -HHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCCh-hhhh---ccCCCCCHHHHHHHHHHHH
Q psy11031 293 -VLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSK-LVLH---KGQIDNSVSAFRRRLELFR 367 (520)
Q Consensus 293 -v~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~-~~~~---r~R~dD~~e~~~~Rl~~f~ 367 (520)
-.+-+...+. .++.+|+|.=+ .=+..+.+.......+||+..|. +.+. ++|..++.+.+++|+....
T Consensus 80 t~~~~v~~~l~-----~g~~vil~id~---~g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~Rg~e~~e~i~~Rl~~a~ 151 (186)
T 1ex7_A 80 STVASVKQVSK-----SGKTCILDIDM---QGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQ 151 (186)
T ss_dssp EEHHHHHHHHH-----HTSEEEEECCH---HHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHCCSCHHHHHHHHHHHH
T ss_pred eecceeeehhh-----CCCEEEecCCH---HHHHHHHHhcccCceEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 1222333344 36689999864 44444444333234456665543 3332 3567788999999998766
Q ss_pred HHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHH
Q psy11031 368 ERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLK 404 (520)
Q Consensus 368 ~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~ 404 (520)
..... .+...-..+.|| .+.++-+++|.+.|.
T Consensus 152 ~e~~~---~~~~~fD~vIvN--ddle~a~~~l~~iI~ 183 (186)
T 1ex7_A 152 AELAY---AETGAHDKVIVN--DDLDKAYKELKDFIF 183 (186)
T ss_dssp HHHHH---HTTTCSSEEEEC--SSHHHHHHHHHHHHT
T ss_pred HHHhh---ccccCCcEEEEC--cCHHHHHHHHHHHHH
Confidence 44321 111111234444 478888888877663
No 119
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.33 E-value=3.4e-06 Score=79.35 Aligned_cols=160 Identities=12% Similarity=0.024 Sum_probs=83.1
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCC--CCe--eeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHH---H
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYP--NWT--QISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVV---L 294 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~--g~~--~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv---~ 294 (520)
...+.+|+|+|++||||||+++.|+..+. |.. +++.+++ + .....+.. ..+.+.. .
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~-~---~~~~~~~~-------------~~~~~~~~~~~ 84 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV-R---HGLNRDLS-------------FKAEDRAENIR 84 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH-T---TTTTTTCC-------------SSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh-h---hHhhcccC-------------cChHHHHHHHH
Confidence 45678999999999999999999998751 444 6665444 3 22211110 1111111 1
Q ss_pred HH--HHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCC-CEEEecCChhhhhccCCCCCHHHHHHHHHHHHHHhH
Q psy11031 295 DI--VYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHP-PMILIDCSKLVLHKGQIDNSVSAFRRRLELFRERTL 371 (520)
Q Consensus 295 ~l--l~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~-~VI~Ld~~~~~~~r~R~dD~~e~~~~Rl~~f~~~~~ 371 (520)
.+ +...+. ..+..+|.++.-......+.+.+.+.... .+|||+|+.+.+.+++...... +.|-..+.. ..
T Consensus 85 ~~~~~~~~~~----~~~~~vi~~~~~~~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R~~~~l~~--~~r~~~~~~-~~ 157 (200)
T 3uie_A 85 RVGEVAKLFA----DAGIICIASLISPYRTDRDACRSLLPEGDFVEVFMDVPLSVCEARDPKGLYK--LARAGKIKG-FT 157 (200)
T ss_dssp HHHHHHHHHH----HTTCEEEEECCCCCHHHHHHHHHTSCTTSEEEEEECCCHHHHHHHCTTSHHH--HHHTTSSCS-CB
T ss_pred HHHHHHHHHH----hCCceEEEecCCchHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhcccchHH--HHhcCCCCC-CC
Confidence 11 111122 23456666654333444555555444322 3599999998765443222000 011000000 01
Q ss_pred HHHHHhhhC-CCEEEEECC--CCHHHHHHHHHHHHHH
Q psy11031 372 PMLRAMDVE-TRLTIVDGD--TQLPQVREEFERVLKK 405 (520)
Q Consensus 372 ~l~~~y~~~-~~l~~IDa~--~~~e~V~~~I~~~I~~ 405 (520)
.+...|... .--++||.+ .+++++.+.|.+.|..
T Consensus 158 ~~~~~~~~~~~~~~~idt~~~~~~~e~v~~i~~~l~~ 194 (200)
T 3uie_A 158 GIDDPYEPPLNCEISLGREGGTSPIEMAEKVVGYLDN 194 (200)
T ss_dssp TTTBCCCCCSSCSEEECCSSCCCHHHHHHHHHHHHHH
T ss_pred CCCCcCcCCCCCCEEEecCCCCCHHHHHHHHHHHHHH
Confidence 111234321 223578977 4999999999888754
No 120
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=98.28 E-value=2.4e-06 Score=94.37 Aligned_cols=160 Identities=11% Similarity=0.126 Sum_probs=83.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCC--CCeeeeh-hhHHhhhhcccccCCcchHHHHhhhhcCCccchHHH---HHHH
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYP--NWTQISL-GKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVV---LDIV 297 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~--g~~~is~-gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv---~~ll 297 (520)
++.+|+|+|.|||||||+|+.|++++. |+..+.+ ++.+| ............- + .+.+ .+++
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR---~~L~~~~~fs~~d------r----ee~~r~i~eva 117 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR---QGLNKNLGFSPED------R----EENVRRIAEVA 117 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHT---TTTTTTCCSSHHH------H----HHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhh---hccCccccCChhh------h----HHHHHHHHHHH
Confidence 578999999999999999999998731 7776665 47777 4332111111000 0 0111 2222
Q ss_pred HHHHhccccCCCcEEEEeCCCC----CHHHHHHHHhhcCCCCCEEEecCChhhhhccCCCCCHHHHHHHHHHHHHHhHHH
Q psy11031 298 YAEMKKTKYTEADGIVIDGFPR----EMSQLIDFENKYQIHPPMILIDCSKLVLHKGQIDNSVSAFRRRLELFRERTLPM 373 (520)
Q Consensus 298 ~~~l~~~~~~~~~G~ILDGFPr----t~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r~R~dD~~e~~~~Rl~~f~~~~~~l 373 (520)
...+. .+..+|.| |-. ..+++..+....+.+..+|||+|+.+.+.++.... -.-+.|...+. ....+
T Consensus 118 ~~~l~-----~G~iVI~d-~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r~--ly~~aR~~~~~-~~~~~ 188 (630)
T 1x6v_B 118 KLFAD-----AGLVCITS-FISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKG--LYKKARAGEIK-GFTGI 188 (630)
T ss_dssp HHHHH-----TTCEEEEE-CCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTTS--HHHHHTTC-----CBTT
T ss_pred HHHHh-----CCCEEEEe-CchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhccc--cchhhhhhhHH-HHHHh
Confidence 22222 23444554 432 23444444433344567999999998754321110 00001110000 11122
Q ss_pred HHHhhh-CCCEEEEECC-CCHHHHHHHHHHHHHH
Q psy11031 374 LRAMDV-ETRLTIVDGD-TQLPQVREEFERVLKK 405 (520)
Q Consensus 374 ~~~y~~-~~~l~~IDa~-~~~e~V~~~I~~~I~~ 405 (520)
...|.. ...-++||++ .+++++.+.|.+.|..
T Consensus 189 ~~~Ye~p~~~dlvIDts~~s~eevv~~Il~~L~~ 222 (630)
T 1x6v_B 189 DSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQE 222 (630)
T ss_dssp TBCCCCCSSCSEEEETTSSCHHHHHHHHHHHHHH
T ss_pred hhhhcccCCCcEEEECCCCCHHHHHHHHHHHHHh
Confidence 234531 1112678987 5999999999888864
No 121
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=98.22 E-value=2.5e-05 Score=71.94 Aligned_cols=130 Identities=11% Similarity=0.155 Sum_probs=86.3
Q ss_pred cccCcHHHHHHHHHHccCCCCCCCCHHHHH-----------HHHHHHHhcCCCCCcEEEe----------CCCCCHH--h
Q psy11031 15 PSHRNPLKMFNLFVSEEVKDFSFLSSKTVT-----------EVLMLEMKMSPAAKAFLIS----------GYPRNMR--D 71 (520)
Q Consensus 15 ~~h~s~G~~l~~~i~~G~~~g~lVPdelv~-----------~ll~~~l~~~~~~~G~ILD----------GFPRt~~--Q 71 (520)
|.+...|..++.++.+|. +.|+.+.. +++...+. ....+|+| |||++.+ +
T Consensus 37 ~~~~~~~~~i~~~~~~g~----~~~~~~~~~~~~~~~~~l~~~i~~~l~---~~~~vi~dr~~~~~~~~~g~~~~~~~~~ 109 (195)
T 2pbr_A 37 PGGTKVGEVLREILLTEE----LDERTELLLFEASRSKLIEEKIIPDLK---RDKVVILDRFVLSTIAYQGYGKGLDVEF 109 (195)
T ss_dssp SCSSHHHHHHHHHHHHSC----CCHHHHHHHHHHHHHHHHHHTHHHHHH---TTCEEEEESCHHHHHHHHTTTTCCCHHH
T ss_pred CCCCchHHHHHHHHcCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHh---CCCEEEECcchhHHHHHccccCCCCHHH
Confidence 445567889999988776 88885542 12222222 23456677 9999765 4
Q ss_pred HHHH---HHhcCCcCEEEEEEcCHHHHHHHhhhCccCCccchHHHHHHH-HHHHhccchHHHHhhhCCcEEEEeCCCChH
Q psy11031 72 VVEY---SDKIKTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMEL-ANFYQNVTPVTDFFDQRGMLIAVNGERNPV 147 (520)
Q Consensus 72 A~~~---~~~~~~pd~VI~L~~pd~~l~~Rl~rg~~~~r~d~e~i~~Rl-~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~e 147 (520)
+..+ ......||++|+|+||.+++.+|+.++ +|.+.+.+.+|+ ..|.+.. ++| +.++.||++++++
T Consensus 110 ~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r---~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~Id~~~~~~ 179 (195)
T 2pbr_A 110 IKNLNEFATRGVKPDITLLLDIPVDIALRRLKEK---NRFENKEFLEKVRKGFLELA----KEE---ENVVVIDASGEEE 179 (195)
T ss_dssp HHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTT---TCCCCHHHHHHHHHHHHHHH----HHS---TTEEEEETTSCHH
T ss_pred HHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhcc---CccchHHHHHHHHHHHHHHH----hhC---CCEEEEECCCCHH
Confidence 3322 233347999999999999999999531 333333345555 4565532 344 3578999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy11031 148 EVYADFRTAVLKIL 161 (520)
Q Consensus 148 eV~~~i~~~l~~~~ 161 (520)
+++++|.+.+...+
T Consensus 180 ~~~~~i~~~l~~~l 193 (195)
T 2pbr_A 180 EVFKEILRALSGVL 193 (195)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987654
No 122
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=98.16 E-value=3.1e-05 Score=73.78 Aligned_cols=137 Identities=14% Similarity=0.110 Sum_probs=82.7
Q ss_pred cCcccCcHHHHHHHHHHccCCCCCCCCHHHHHHH------------HHHHHhcCCCCCcEEEe----------CCCCCHH
Q psy11031 13 DFPSHRNPLKMFNLFVSEEVKDFSFLSSKTVTEV------------LMLEMKMSPAAKAFLIS----------GYPRNMR 70 (520)
Q Consensus 13 ~~~~h~s~G~~l~~~i~~G~~~g~lVPdelv~~l------------l~~~l~~~~~~~G~ILD----------GFPRt~~ 70 (520)
..|..+..|..+++++.++. .++.....-| +...++ ..+-+|.| |+.|...
T Consensus 36 ~eP~~t~~g~~ir~~l~~~~----~~~~~~~~lLf~a~R~~~~~~~i~p~l~---~g~~Vi~DRy~~S~~ayq~~~~~~~ 108 (205)
T 4hlc_A 36 REPGGVPTGEEIRKIVLEGN----DMDIRTEAMLFAASRREHLVLKVIPALK---EGKVVLCDRYIDSSLAYQGYARGIG 108 (205)
T ss_dssp ESSTTCHHHHHHHHHHHSSC----CCCHHHHHHHHHHHHHHHHHHTHHHHHH---TTCEEEEECCHHHHHHHTTTTTSSC
T ss_pred eCCCCChHHHHHHHHHhccc----CCCHHHHHHHHHHHHHHHHHHHHHHHHH---cCCEEEecCcccchHHHHhccccch
Confidence 35778889999999999887 6665543322 122222 12223445 5566544
Q ss_pred hH-----HHHHHhcCCcCEEEEEEcCHHHHHHHh-hhCccCCccchH--HHHHHHH-HHHhccchHHHHhhhCCcEEEEe
Q psy11031 71 DV-----VEYSDKIKTINGVILIAWRQSLLERQI-DYGAKLGHVILS--LARMELA-NFYQNVTPVTDFFDQRGMLIAVN 141 (520)
Q Consensus 71 QA-----~~~~~~~~~pd~VI~L~~pd~~l~~Rl-~rg~~~~r~d~e--~i~~Rl~-~Y~~~t~pvi~~Y~~~~~l~~Id 141 (520)
.. ..+......||++|+|++|.+++.+|+ .|+....|.+.+ ...+|+. .|.+ +.+.|. +.++.||
T Consensus 109 ~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~~~dr~e~~~~~f~~~v~~~Y~~----l~~~~~--~~~~~ID 182 (205)
T 4hlc_A 109 VEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLKFHEKVIEGYQE----IIHNES--QRFKSVN 182 (205)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC-------CCHHHHHHHHHHHHHHHH----HHHSCC--TTEEEEE
T ss_pred HHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCCcccchhccCHHHHHHHHHHHHH----HHHhCC--CCEEEEE
Confidence 33 112223458999999999999999999 455443454322 2233332 2322 222222 3489999
Q ss_pred CCCChHHHHHHHHHHHHHHhc
Q psy11031 142 GERNPVEVYADFRTAVLKILN 162 (520)
Q Consensus 142 a~~~~eeV~~~i~~~l~~~~~ 162 (520)
|++++++|+++|.+.|...+.
T Consensus 183 a~~~~e~V~~~i~~~i~~~L~ 203 (205)
T 4hlc_A 183 ADQPLENVVEDTYQTIIKYLE 203 (205)
T ss_dssp TTSCHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999988763
No 123
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=98.09 E-value=6e-06 Score=90.61 Aligned_cols=163 Identities=9% Similarity=0.032 Sum_probs=81.2
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCCC------CeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHH
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPN------WTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLD 295 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g------~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ 295 (520)
...+.+|+|.|.|||||||+|+.|++++ + +.+++ ++.+| .....+......-+. +. -..+..
T Consensus 393 gq~~~~I~l~GlsGSGKSTiA~~La~~L-~~~G~~~~~~lD-~D~ir---~~l~~~~~f~~~er~-----~~--i~ri~~ 460 (573)
T 1m8p_A 393 ATQGFTIFLTGYMNSGKDAIARALQVTL-NQQGGRSVSLLL-GDTVR---HELSSELGFTREDRH-----TN--IQRIAF 460 (573)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHH-HHHCSSCEEEEE-HHHHH---HHTCTTCCCSHHHHH-----HH--HHHHHH
T ss_pred cccceEEEeecCCCCCHHHHHHHHHHHh-cccCCceEEEEC-cHHHH---HHhccccCCChhHHH-----HH--HHHHHH
Confidence 4567899999999999999999999985 5 24455 46667 322111111000000 00 001122
Q ss_pred HHHHHHhccccCCCcEEEEeCC---CCCHHHHHHHHhhcCCCCCEEEecCChhhhhccCCCCCHHHHHHHHHHHHHHhHH
Q psy11031 296 IVYAEMKKTKYTEADGIVIDGF---PREMSQLIDFENKYQIHPPMILIDCSKLVLHKGQIDNSVSAFRRRLELFRERTLP 372 (520)
Q Consensus 296 ll~~~l~~~~~~~~~G~ILDGF---Prt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r~R~dD~~e~~~~Rl~~f~~~~~~ 372 (520)
++...+. .+..+|+|.+ +...+++..+....+ +..+|||+|+.+.+.+++...... +.|..... ....
T Consensus 461 v~~~~~~-----~g~~VI~~~is~~~~~R~~~r~l~~~~g-~~~~V~Lda~~ev~~~R~~r~l~~--~~~~~~i~-~~~~ 531 (573)
T 1m8p_A 461 VATELTR-----AGAAVIAAPIAPYEESRKFARDAVSQAG-SFFLVHVATPLEHCEQSDKRGIYA--AARRGEIK-GFTG 531 (573)
T ss_dssp HHHHHHH-----TTCEEEEECCCCCHHHHHHHHHHHHTTS-EEEEEEECCCHHHHHHHCSSCHHH--HHHTTSSS-SCBT
T ss_pred HHHHHHh-----CCCEEEEEcCCCcHHHHHHHHHHHHhcC-CeEEEEEeCCHHHHHHHhcccchh--hhhHHHHH-HHHh
Confidence 3333222 3445666632 222334433332211 236899999998765443221100 01100000 0000
Q ss_pred HHH-HhhhCCCEEEEECCC-CHHHHHHHHHHHHHH
Q psy11031 373 MLR-AMDVETRLTIVDGDT-QLPQVREEFERVLKK 405 (520)
Q Consensus 373 l~~-~y~~~~~l~~IDa~~-~~e~V~~~I~~~I~~ 405 (520)
..+ ||.....-++||++. +++++.+.|...|..
T Consensus 532 ~r~~~~~p~~~dl~IDts~~s~eevv~~Il~~l~~ 566 (573)
T 1m8p_A 532 VDDPYETPEKADLVVDFSKQSVRSIVHEIILVLES 566 (573)
T ss_dssp TTBCCCCCSSCSEEECTTTSCHHHHHHHHHHHHHH
T ss_pred ccccccccCCCCEEEECCCCCHHHHHHHHHHHHHh
Confidence 111 222112236789885 999999998887753
No 124
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=98.05 E-value=5.5e-05 Score=69.92 Aligned_cols=135 Identities=12% Similarity=0.080 Sum_probs=85.1
Q ss_pred CcccCcHHHHHHHHHHccCCCCCCCCHHHHHHHHHHH------HhcC-CCCCcEEEe----------CCCCCHHhH----
Q psy11031 14 FPSHRNPLKMFNLFVSEEVKDFSFLSSKTVTEVLMLE------MKMS-PAAKAFLIS----------GYPRNMRDV---- 72 (520)
Q Consensus 14 ~~~h~s~G~~l~~~i~~G~~~g~lVPdelv~~ll~~~------l~~~-~~~~G~ILD----------GFPRt~~QA---- 72 (520)
.|.....|..+++++.+|. +.|.....-....+ +... .....+|+| ||||+..+.
T Consensus 36 ~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~r~~~~~~i~~~l~~g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~ 111 (197)
T 2z0h_A 36 EPGGTETGEKIRKILLEEE----VTPKAELFLFLASRNLLVTEIKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEE 111 (197)
T ss_dssp SSCSSHHHHHHHHHHHHSC----CCHHHHHHHHHHHHHHHHHHHTTC----CEEEEESCHHHHHHHTTTTTCSCHHHHHH
T ss_pred CCCCCcHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCChhHHHHHHHhccCCCHHHHHH
Confidence 3556678999999999776 77764433221111 3211 123456777 789887654
Q ss_pred -HHHHHhcCCcCEEEEEEcCHHHHHHHhhhCccCCccchHHHHHHH-HHHHhccchHHHHhhhCCcEEEEeCCCChHHHH
Q psy11031 73 -VEYSDKIKTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMEL-ANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVY 150 (520)
Q Consensus 73 -~~~~~~~~~pd~VI~L~~pd~~l~~Rl~rg~~~~r~d~e~i~~Rl-~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~ 150 (520)
..+......||.||+|+||.+++.+|+..+ +|.+.+.+.+|+ ..|.+ +.+.|. ..++.||+++++++++
T Consensus 112 ~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R---~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~Id~~~~~e~~~ 182 (197)
T 2z0h_A 112 LNDFATDGLIPDLTFYIDVDVETALKRKGEL---NRFEKREFLERVREGYLV----LAREHP--ERIVVLDGKRSIEEIH 182 (197)
T ss_dssp HHHHHHTTCCCSEEEEEECCHHHHHHHC------CCCCCHHHHHHHHHHHHH----HHHHCT--TTEEEEETTSCHHHHH
T ss_pred HHHHhcCCCCCCEEEEEeCCHHHHHHHHhcc---CcccHHHHHHHHHHHHHH----HHHhCC--CCEEEEeCCCCHHHHH
Confidence 222333457999999999999999999422 333333444444 34444 234443 3488999999999999
Q ss_pred HHHHHHHHHHh
Q psy11031 151 ADFRTAVLKIL 161 (520)
Q Consensus 151 ~~i~~~l~~~~ 161 (520)
++|.+.+...+
T Consensus 183 ~~i~~~l~~~l 193 (197)
T 2z0h_A 183 RDVVREVKRRW 193 (197)
T ss_dssp HHHHHHTTCC-
T ss_pred HHHHHHHHHHh
Confidence 99999887544
No 125
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=98.05 E-value=3.2e-05 Score=73.68 Aligned_cols=157 Identities=11% Similarity=0.199 Sum_probs=87.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCC---CeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccc---hHHH---H
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPN---WTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVN---RDVV---L 294 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g---~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vP---d~lv---~ 294 (520)
...+|+|.|.|||||+|+|+.|.+.+ | +..+++++.+++... .+.+-..... +..+.+-. ..+. .
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~-g~~~~~vv~msD~iK~~~a-~~~gl~~~~~----l~~~~ykE~~R~~m~~~g~ 83 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRL-GADVCAVLRLSGPLKEQYA-QEHGLNFQRL----LDTSTYKEAFRKDMIRWGE 83 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHH-CTTTEEEECTHHHHHHHHH-HTTTCCCC-----------CCSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHc-CCCCceEEEccHHHHHHHH-HHcCCCchhh----cchhhhHHHHHHHHHHHHH
Confidence 45789999999999999999998866 5 678999999993111 1111111111 11111000 0000 0
Q ss_pred HHH-------HHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-cc----C-CCCCHHHHHH
Q psy11031 295 DIV-------YAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-KG----Q-IDNSVSAFRR 361 (520)
Q Consensus 295 ~ll-------~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-r~----R-~dD~~e~~~~ 361 (520)
++. ..... .......|||||- |...+++.|.+.++..-.+|.+.++++.+. |+ + .||.+ .
T Consensus 84 ~~R~~d~~~~~~~~~--~~~~~~~vII~dv-R~~~Ev~~fr~~~g~~~~iirI~as~~~R~~Rg~~~~~~~Dd~e-s--- 156 (202)
T 3ch4_B 84 EKRQADPGFFCRKIV--EGISQPIWLVSDT-RRVSDIQWFREAYGAVTQTVRVVALEQSRQQRGWVFTPGVDDAE-S--- 156 (202)
T ss_dssp HHHHHCTTTTHHHHS--BTCCCSEEEECCC-CSHHHHHHHHHHHGGGEEEEEEEECHHHHHHTTCCCCTTTTTSH-H---
T ss_pred HHHhcCchHHHHHHH--HhcCCCcEEEeCC-CCHHHHHHHHHhCCCcEEEEEEECCHHHHHHHhhhccccccccc-c---
Confidence 000 11111 1122357999998 889999999987762233678888887642 22 2 22221 1
Q ss_pred HHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHH
Q psy11031 362 RLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLK 404 (520)
Q Consensus 362 Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~ 404 (520)
-..+ ..|. ..-+ +|+.+.+.+++.+.+...|.
T Consensus 157 --------E~gL-~~~~-~~D~-vI~Ndgt~eel~~~v~~ll~ 188 (202)
T 3ch4_B 157 --------ECGL-DNFG-DFDW-VIENHGVEQRLEEQLENLIE 188 (202)
T ss_dssp --------HHTT-TTCC-CCSE-EEEECSCHHHHHHHHHHHHH
T ss_pred --------ccCC-CCCC-cCCE-EEEeCCCHHHHHHHHHHHHH
Confidence 1122 2221 2223 56777798888777776553
No 126
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.04 E-value=1.4e-05 Score=74.21 Aligned_cols=166 Identities=17% Similarity=0.223 Sum_probs=66.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCc----chHHHHhhhhcCCccchH--------HH
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEG----LNSRIKSSVSAGDFVNRD--------VV 293 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~----~g~~i~~~l~~G~~vPd~--------lv 293 (520)
.+|.|+||+||||||+++.|+..++....++.....|........+.. ....+..++..+..+... .-
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~yg~~ 81 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGST 81 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCccCCeeeeecCHHHHHHHHhhcceeeEEEEeceeccCc
Confidence 468999999999999999999876211222221111100000000100 001222222222211100 00
Q ss_pred HHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCCh-hhhh---ccCCCCCHHHHHHHHHHHHHH
Q psy11031 294 LDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSK-LVLH---KGQIDNSVSAFRRRLELFRER 369 (520)
Q Consensus 294 ~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~-~~~~---r~R~dD~~e~~~~Rl~~f~~~ 369 (520)
.+-+...+. .++.+|+|-- ..-+..+.........+||+..|. +.+. +.|..++++.+++|+......
T Consensus 82 ~~~i~~~l~-----~g~~~il~~~---~~g~~~l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~~~~ 153 (186)
T 3a00_A 82 VASVKQVSK-----SGKTCILDID---MQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAE 153 (186)
T ss_dssp HHHHHHHHH-----TTCEEEEECC---HHHHHHHHTCGGGCCEEEEEECSCC----------------------------
T ss_pred HHHHHHHHH-----cCCeEEEEEc---HHHHHHHHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 122333344 3567888853 455555655122345578888865 4332 245566778889998876544
Q ss_pred hHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHH
Q psy11031 370 TLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLK 404 (520)
Q Consensus 370 ~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~ 404 (520)
.. ..+...-..+.+| + +.+...+++.+.|.
T Consensus 154 ~~---~~~~~~~d~vi~n-d-~~~~a~~~l~~~i~ 183 (186)
T 3a00_A 154 LA---YAETGAHDKVIVN-D-DLDKAYKELKDFIF 183 (186)
T ss_dssp --------CCCCSEEEEC-S-SHHHHHHHHHHHHT
T ss_pred HH---hhcccCCcEEEEC-c-CHHHHHHHHHHHHH
Confidence 21 1111112244443 3 78888888877763
No 127
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.02 E-value=2.2e-05 Score=73.40 Aligned_cols=131 Identities=11% Similarity=0.056 Sum_probs=81.0
Q ss_pred HHHHHHHHHHccCCCCCC--CCHHHHHHHH--HHHH-------hc-CCCCCcEEEeCCCCCHH--h---------HHHHH
Q psy11031 20 PLKMFNLFVSEEVKDFSF--LSSKTVTEVL--MLEM-------KM-SPAAKAFLISGYPRNMR--D---------VVEYS 76 (520)
Q Consensus 20 ~G~~l~~~i~~G~~~g~l--VPdelv~~ll--~~~l-------~~-~~~~~G~ILDGFPRt~~--Q---------A~~~~ 76 (520)
.|..++.++..+. . .++.....++ ..+. .. ......+|+||||++.. | +..+.
T Consensus 41 ~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~r~~~~~~~i~~~l~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~ 116 (213)
T 2plr_A 41 SSDWIHDIIKEAK----KKDLLTPLTFSLIHATDFSDRYERYILPMLKSGFIVISDRYIYTAYARDSVRGVDIDWVKKLY 116 (213)
T ss_dssp CCCHHHHHHHHHT----TTSCCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHT
T ss_pred cHHHHHHHHhccc----cccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHH
Confidence 5777888887664 2 3444333322 1111 10 01345789999998742 2 22222
Q ss_pred HhcCCcCEEEEEEcCHHHHHHHhh-hCccCCc-------------cc-hHHHHHHHHHHHhccchHHHHhhhCCcEEEEe
Q psy11031 77 DKIKTINGVILIAWRQSLLERQID-YGAKLGH-------------VI-LSLARMELANFYQNVTPVTDFFDQRGMLIAVN 141 (520)
Q Consensus 77 ~~~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r-------------~d-~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Id 141 (520)
.....++++|+|+||.+++.+|+. .+....| .+ .+.+.+|+..++..+. +.| .++.||
T Consensus 117 ~~~~~~~~vi~l~~~~e~~~~Rl~~~R~~~~~~~~g~~~~~~~d~~e~~~~~~~r~~~~~~~~~---~~~----~~~~Id 189 (213)
T 2plr_A 117 SFAIKPDITFYIRVSPDIALERIKKSKRKIKPQEAGADIFPGLSPEEGFLKYQGLITEVYDKLV---KDE----NFIVID 189 (213)
T ss_dssp TTSCCCSEEEEEECCHHHHHHHHHHTTCCCCTTTTTTTTCTTSCHHHHHHHHHHHHHHHHHHHT---TTT----TCEEEE
T ss_pred hcCCCCCEEEEEeCCHHHHHHHHhcccccccccccccccccccchhhhHHHHHHHHHHHHHHHH---hhC----CEEEEE
Confidence 233469999999999999999985 3221123 11 1355666666554432 112 478999
Q ss_pred CCCChHHHHHHHHHHHHHHh
Q psy11031 142 GERNPVEVYADFRTAVLKIL 161 (520)
Q Consensus 142 a~~~~eeV~~~i~~~l~~~~ 161 (520)
+++++++|+++|.+.+...+
T Consensus 190 ~~~~~e~v~~~I~~~l~~~~ 209 (213)
T 2plr_A 190 GTKTPKEIQIQIRKFVGELI 209 (213)
T ss_dssp TTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999998765
No 128
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.98 E-value=7.8e-05 Score=68.84 Aligned_cols=26 Identities=8% Similarity=0.226 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
...+|+|+||+||||||+++.|+..+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35689999999999999999999876
No 129
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.96 E-value=6.1e-05 Score=72.99 Aligned_cols=138 Identities=4% Similarity=-0.028 Sum_probs=87.7
Q ss_pred cccCcccCcHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHhc---C--C---CCCcEEEeCCCC----------CHH--
Q psy11031 11 LLDFPSHRNPLKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMKM---S--P---AAKAFLISGYPR----------NMR-- 70 (520)
Q Consensus 11 ~~~~~~h~s~G~~l~~~i~~G~~~g~lVPdelv~~ll~~~l~~---~--~---~~~G~ILDGFPR----------t~~-- 70 (520)
+...|..+.+|..+++++.+|. +.|.....-...+|... . + ..+-+|.|.|.- .+.
T Consensus 62 ~~rep~~t~~g~~ir~~l~~~~----~~~~~~~llf~a~R~~~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~ 137 (227)
T 3v9p_A 62 VTREPGGTRLGETLREILLNQP----MDLETEALLMFAGRREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRD 137 (227)
T ss_dssp EEESSSSSHHHHHHHHHHHHSC----CCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHH
T ss_pred eecCCCCChHHHHHHHHHHcCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHH
Confidence 4556777889999999999986 77776544444444321 0 1 234567896653 321
Q ss_pred hHHH---HHHhcCCcCEEEEEEcCHHHHHHHhh-hCccCCccch--HHHHHHH-HHHHhccchHHHHhhhCCcEEEEeCC
Q psy11031 71 DVVE---YSDKIKTINGVILIAWRQSLLERQID-YGAKLGHVIL--SLARMEL-ANFYQNVTPVTDFFDQRGMLIAVNGE 143 (520)
Q Consensus 71 QA~~---~~~~~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d~--e~i~~Rl-~~Y~~~t~pvi~~Y~~~~~l~~Ida~ 143 (520)
.... +...+..||++|+|++|.+++.+|+. |+. ..|.+. ....+|+ +.|.+ +.+.|. +.++.|||+
T Consensus 138 ~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~~-~dr~E~~~~ef~~rv~~~Y~~----la~~~~--~~~~vIDa~ 210 (227)
T 3v9p_A 138 KLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRM-PDKFESESDAFFARTRAEYLR----RAQEAP--HRFVIVDSS 210 (227)
T ss_dssp HHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCCC-C---CCHHHHHHHHHHHHHHH----HHHHCT--TTEEEEETT
T ss_pred HHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccC-ccchhhhhHHHHHHHHHHHHH----HHHHhc--CCEEEEeCC
Confidence 1111 11224689999999999999999994 432 123332 2333444 34433 344454 349999999
Q ss_pred CChHHHHHHHHHHHHH
Q psy11031 144 RNPVEVYADFRTAVLK 159 (520)
Q Consensus 144 ~~~eeV~~~i~~~l~~ 159 (520)
+++++|+++|.+.|+.
T Consensus 211 ~s~eeV~~~I~~~l~~ 226 (227)
T 3v9p_A 211 EPIAQIRKQLEGVLAA 226 (227)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999999875
No 130
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.94 E-value=2.3e-05 Score=76.88 Aligned_cols=35 Identities=23% Similarity=0.500 Sum_probs=32.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHH
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLL 261 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLl 261 (520)
+.|+|+|+|||||||+|+.|++++ ++.+++.+++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~-~~~~i~~D~~~ 36 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET-GWPVVALDRVQ 36 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH-CCCEEECCSGG
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC-CCeEEeccHHh
Confidence 468999999999999999999997 99999998864
No 131
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.92 E-value=0.00028 Score=68.68 Aligned_cols=142 Identities=13% Similarity=0.036 Sum_probs=84.0
Q ss_pred cccCcccCcHHHHHHHHHHccCCCCCCCCHHHHH------------HHHHHHHhcCCCCCcEEEe----------CCCCC
Q psy11031 11 LLDFPSHRNPLKMFNLFVSEEVKDFSFLSSKTVT------------EVLMLEMKMSPAAKAFLIS----------GYPRN 68 (520)
Q Consensus 11 ~~~~~~h~s~G~~l~~~i~~G~~~g~lVPdelv~------------~ll~~~l~~~~~~~G~ILD----------GFPRt 68 (520)
++.-|..+.+|..+++++..+.... .+...... +.|...|. ..+-+|.| |++|.
T Consensus 61 ~~rep~~t~~g~~ir~~l~~~~~~~-~~~~~~e~lLf~A~R~~~~~~~I~paL~---~g~~VI~DRy~~S~~AYq~~~rg 136 (236)
T 3lv8_A 61 RTREPGGTLLAEKLRALVKEEHPGE-ELQDITELLLVYAARVQLVENVIKPALA---RGEWVVGDRHDMSSQAYQGGGRQ 136 (236)
T ss_dssp EEESSCSSHHHHHHHHHHHSCCTTS-CCCHHHHHHHHHHHHHHHHHHTHHHHHH---TTCEEEEESCHHHHHHHTTTTTC
T ss_pred eecCCCCCHHHHHHHHHHhhCCCcc-cCCHHHHHHHHHHHHHHHHHHHHHHHHH---cCCEEEEeeecchHHhhhhhccC
Confidence 4456778889999999997543222 23332221 22222222 23456667 55665
Q ss_pred HHhH-----HHHHHhcCCcCEEEEEEcCHHHHHHHh-hhCccCCccch--HHHHHHHHHHHhccchHHHHhhhCCcEEEE
Q psy11031 69 MRDV-----VEYSDKIKTINGVILIAWRQSLLERQI-DYGAKLGHVIL--SLARMELANFYQNVTPVTDFFDQRGMLIAV 140 (520)
Q Consensus 69 ~~QA-----~~~~~~~~~pd~VI~L~~pd~~l~~Rl-~rg~~~~r~d~--e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~I 140 (520)
+... ..+...+..||++|+|+||.+++.+|+ .|+.. .|.+. ....+|+...... +.+.|. .++.|
T Consensus 137 l~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~~-dr~E~~~~~~~~rv~~~y~~---la~~~~---~~~vI 209 (236)
T 3lv8_A 137 IAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGEL-DRIEKMDISFFERARERYLE---LANSDD---SVVMI 209 (236)
T ss_dssp CCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----CC-CTTTTSCHHHHHHHHHHHHH---HHHHCT---TEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCc-chhhhhHHHHHHHHHHHHHH---HHHHCC---CEEEE
Confidence 5432 122223468999999999999999999 45431 23321 2344444333221 222222 38999
Q ss_pred eCCCChHHHHHHHHHHHHHHhcc
Q psy11031 141 NGERNPVEVYADFRTAVLKILNK 163 (520)
Q Consensus 141 da~~~~eeV~~~i~~~l~~~~~~ 163 (520)
||++++++|+++|.+.|...+.+
T Consensus 210 Da~~sieeV~~~I~~~l~~~l~~ 232 (236)
T 3lv8_A 210 DAAQSIEQVTADIRRALQDWLSQ 232 (236)
T ss_dssp ETTSCHHHHHHHHHHHHHHHHTT
T ss_pred eCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999988743
No 132
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.92 E-value=3.4e-05 Score=71.38 Aligned_cols=37 Identities=19% Similarity=0.270 Sum_probs=30.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR 262 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr 262 (520)
.+|+|+|++||||||+++.|++.+.|..+++.+++.+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~ 39 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINH 39 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhh
Confidence 5789999999999999999998762347787766654
No 133
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.91 E-value=9.2e-05 Score=70.22 Aligned_cols=158 Identities=14% Similarity=0.235 Sum_probs=82.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccc---cCCcc----hHHHHhhhhcCCccchH----
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIED---DGEGL----NSRIKSSVSAGDFVNRD---- 291 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~---~~t~~----g~~i~~~l~~G~~vPd~---- 291 (520)
..+..|+|+||+||||||++++|++.+++....+...-.| .-.. .+... -..++..+..|..+...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR---~p~~gE~~G~~y~fvs~~~f~~~i~~~~fle~~~~~~ 93 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTR---PPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQG 93 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECS---CCCTTCCTTSSCEECCHHHHHHHHHTTCEEEEEEETT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeeccccc---CCcCCeeccccceeccHHHhhhhhhhhhhhhhhhhhc
Confidence 3567899999999999999999999874333333322222 1100 11110 12333333343322210
Q ss_pred ----HHHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhhccCCCCCHHHHHHHHHHHH
Q psy11031 292 ----VVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHKGQIDNSVSAFRRRLELFR 367 (520)
Q Consensus 292 ----lv~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~r~R~dD~~e~~~~Rl~~f~ 367 (520)
+-..-+++.+. .++.+|||.-+....|+. .... .+.+||+. |+.. .|..+..+.+.+|++.-.
T Consensus 94 n~YGt~~~~v~~~l~-----~G~~vildid~qg~~~~~---~~~~-~~~~Ifi~-Pps~---~~~~e~~~~i~~r~~~~~ 160 (197)
T 3ney_A 94 NMFGTKFETVHQIHK-----QNKIAILDIEPQTLKIVR---TAEL-SPFIVFIA-PTDQ---GTQTEALQQLQKDSEAIR 160 (197)
T ss_dssp EEEEEEHHHHHHHHH-----TTCEEEEECCGGGHHHHC---STTT-CEEEEEEE-ECCB---SSCCHHHHHHHHHHHHHH
T ss_pred eecccchhhHHHHHh-----cCCeEEEEECHHHHHHHH---hcCC-CceEEEEe-CCCc---cccchHHHHHHHHHHHHH
Confidence 00122333344 467899999877766553 2222 23567777 4433 233344566777764221
Q ss_pred HHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031 368 ERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK 405 (520)
Q Consensus 368 ~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~ 405 (520)
.-|...-..+.||. +.++-++++.++|..
T Consensus 161 -------~~~~~~fd~vivNd--~l~~a~~~l~~ii~~ 189 (197)
T 3ney_A 161 -------SQYAHYFDLSLVNN--GVDETLKKLQEAFDQ 189 (197)
T ss_dssp -------HHHGGGCSEEEEES--CHHHHHHHHHHHHHH
T ss_pred -------HhhccCCCEEEECC--CHHHHHHHHHHHHHH
Confidence 11222222455654 577777777777643
No 134
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.86 E-value=0.00017 Score=67.66 Aligned_cols=39 Identities=18% Similarity=0.423 Sum_probs=33.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCC--CeeeehhhHHh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPN--WTQISLGKLLR 262 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g--~~~is~gdLlr 262 (520)
..+.+|.|+|+.||||||+++.|+..+ + +.+++.+..++
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~-~~~i~~v~~d~~~~ 44 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTL-GERVALLPMDHYYK 44 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHH-GGGEEEEEGGGCBC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh-CCCeEEEecCcccc
Confidence 346789999999999999999999987 7 88888877665
No 135
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.84 E-value=0.0001 Score=70.61 Aligned_cols=160 Identities=14% Similarity=0.169 Sum_probs=66.1
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHH-hhCCCCeeeehhhHHhhhhcccccCCcch--------HHHHhhhhcCCcc----
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVL-QDYPNWTQISLGKLLRYFANIEDDGEGLN--------SRIKSSVSAGDFV---- 288 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La-~k~~g~~~is~gdLlr~~~~~~~~~t~~g--------~~i~~~l~~G~~v---- 288 (520)
.....+|.|+||+||||||+++.|+ ..+ .....+.....+ ....+...| ..+......+...
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~-~~~~~~~~~~~~----~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLLEKQK-NNIVKSVSVTTR----AARKGEKEGKDYYFVDREEFLRLCSNGEIIEHAE 98 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHHC-----CEEECCCEESS----CCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcCC-CCcccccccCCC----CCCccccCCCeEEEecHHHhhhhhhcCceehhhh
Confidence 3456789999999999999999999 765 222222211111 111111001 1111111111111
Q ss_pred --------chHHHHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEe-cCChhhhh---ccCCCCCH
Q psy11031 289 --------NRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILI-DCSKLVLH---KGQIDNSV 356 (520)
Q Consensus 289 --------Pd~lv~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~L-d~~~~~~~---r~R~dD~~ 356 (520)
+.+. +...+. ....+|+|.- ...+..+.+.+.....+||+ .++.+.+. +.|..++.
T Consensus 99 ~~~~~~~~~~~~----i~~~~~-----~~~~vild~~---~~g~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R~~~~~ 166 (231)
T 3lnc_A 99 VFGNFYGVPRKN----LEDNVD-----KGVSTLLVID---WQGAFKFMEMMREHVVSIFIMPPSMEELRRRLCGRRADDS 166 (231)
T ss_dssp ETTEEEEEECTT----HHHHHH-----HTCEEEEECC---HHHHHHHHHHSGGGEEEEEEECSCHHHHHHC---------
T ss_pred hccccCCCCHHH----HHHHHH-----cCCeEEEEcC---HHHHHHHHHhcCCCeEEEEEECCcHHHHHHHHHHcCCCCH
Confidence 1111 122223 2346788754 33444455544212234444 55555432 24545677
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031 357 SAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK 405 (520)
Q Consensus 357 e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~ 405 (520)
+.+++|+...... .+++...+ ++ |+.+ +.+++.+++...|..
T Consensus 167 ~~i~~rl~~~~~~----~~~~~~~d-~v-I~n~-~~e~~~~~l~~~i~~ 208 (231)
T 3lnc_A 167 EVVEARLKGAAFE----ISHCEAYD-YV-IVNE-DIEETADRISNILRA 208 (231)
T ss_dssp -----CHHHHHHH----HTTGGGSS-EE-EECS-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HhhhcCCe-EE-EECc-CHHHHHHHHHHHHHH
Confidence 7888888755433 23333323 44 4444 788888888887765
No 136
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.83 E-value=3.1e-05 Score=72.64 Aligned_cols=130 Identities=13% Similarity=0.136 Sum_probs=85.3
Q ss_pred CcHHHHHHHHHHccCCCCCCCCHHHHHHHHHH-------HHhcC-CCCCcEEEeCCCCCH--HhH------HHHHH----
Q psy11031 18 RNPLKMFNLFVSEEVKDFSFLSSKTVTEVLML-------EMKMS-PAAKAFLISGYPRNM--RDV------VEYSD---- 77 (520)
Q Consensus 18 ~s~G~~l~~~i~~G~~~g~lVPdelv~~ll~~-------~l~~~-~~~~G~ILDGFPRt~--~QA------~~~~~---- 77 (520)
...|..++.++.++. .+++..+..+... .+... .....+|+|+||.+- -|. ..+..
T Consensus 51 ~~~g~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (212)
T 2wwf_A 51 TGIGQIISKYLKMEN----SMSNETIHLLFSANRWEHMNEIKSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQ 126 (212)
T ss_dssp SHHHHHHHHHHTTSS----CCCHHHHHHHHHHHHHTTHHHHHHHHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGT
T ss_pred CcHHHHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhh
Confidence 567888888887665 7887765544431 12110 124679999999751 221 12321
Q ss_pred hcCCcCEEEEEEcCHHHHHHHhhhCccCCccchHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHHH
Q psy11031 78 KIKTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAV 157 (520)
Q Consensus 78 ~~~~pd~VI~L~~pd~~l~~Rl~rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l 157 (520)
....+|.+|+|+||.+++.+|+.++ ..|.+.+.+.+|+...++.... ....+.||+++++++++++|.+.+
T Consensus 127 ~~~~~d~vi~l~~~~e~~~~Rl~~r--~~r~~~~~~~~~~~~~~~~~~~-------~~~~~~Id~~~~~~~~~~~i~~~l 197 (212)
T 2wwf_A 127 GLIKPDVVFYLNVPPNYAQNRSDYG--EEIYEKVETQKKIYETYKHFAH-------EDYWINIDATRKIEDIHNDIVKEV 197 (212)
T ss_dssp TSBCCSEEEEEECCTTGGGGSTTTT--SSTTCSHHHHHHHHHHGGGGTT-------CTTEEEEECSSCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEeCCHHHHHHhhccC--cccccHHHHHHHHHHHHHHHhc-------cCCEEEEECCCCHHHHHHHHHHHH
Confidence 2247999999999999999998532 1334445566777554433322 234789999999999999999988
Q ss_pred HHH
Q psy11031 158 LKI 160 (520)
Q Consensus 158 ~~~ 160 (520)
...
T Consensus 198 ~~~ 200 (212)
T 2wwf_A 198 TKI 200 (212)
T ss_dssp TTS
T ss_pred HHh
Confidence 653
No 137
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.82 E-value=0.00022 Score=65.37 Aligned_cols=135 Identities=8% Similarity=-0.021 Sum_probs=80.6
Q ss_pred cCcHHHHHHHHH-HccCCC-----CCCCCH--HHHHHHHHHHHhcC---CCCCcEEEeCCCCCHHhH-------HHHHHh
Q psy11031 17 HRNPLKMFNLFV-SEEVKD-----FSFLSS--KTVTEVLMLEMKMS---PAAKAFLISGYPRNMRDV-------VEYSDK 78 (520)
Q Consensus 17 h~s~G~~l~~~i-~~G~~~-----g~lVPd--elv~~ll~~~l~~~---~~~~G~ILDGFPRt~~QA-------~~~~~~ 78 (520)
|++.|..+.+.+ .++... +.+.|+ ..+...+..++... .....+|+|||++...|+ ..+...
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~ 113 (194)
T 1nks_A 34 IINYGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQIDAAKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITE 113 (194)
T ss_dssp EEEHHHHHHHHHHTTTSCSSHHHHTTSCHHHHHHHHHHHHHHHHHHHHHTCSSEEEEEECSEEEETTEEEESSCHHHHHH
T ss_pred EEECChHHHHHHHhcccccchhhhhcCCHHHHHHHHHHHHHHHHHHhhccCCCEEEECCchhhccccccccCCCHHHHHh
Confidence 788888887766 344321 235555 33444444444321 345789999998766661 123333
Q ss_pred cCCcCEEEEEEcCHHHHHHH-h-h--hCccCCccchHHH--HHHHHHHHhccchHHHHhhhCCcEEEE-eCCCChHHHHH
Q psy11031 79 IKTINGVILIAWRQSLLERQ-I-D--YGAKLGHVILSLA--RMELANFYQNVTPVTDFFDQRGMLIAV-NGERNPVEVYA 151 (520)
Q Consensus 79 ~~~pd~VI~L~~pd~~l~~R-l-~--rg~~~~r~d~e~i--~~Rl~~Y~~~t~pvi~~Y~~~~~l~~I-da~~~~eeV~~ 151 (520)
. .|+++|+|+||.+++.+| + . |+. ..+.+.+.+ .+|+..... ...+.|.. ..++.| |++++++++++
T Consensus 114 ~-~~~~vi~l~~~~~~~~~rr~~~~~R~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~I~d~~~~~e~v~~ 187 (194)
T 1nks_A 114 I-NPSVIFLLEADPKIILSRQKRDTTRNR-NDYSDESVILETINFARYAA---TASAVLAG-STVKVIVNVEGDPSIAAN 187 (194)
T ss_dssp H-CCSEEEEEECCHHHHHHHHHHCTTTCC-CCCCSHHHHHHHHHHHHHHH---HHHHHHHT-CEEEEEECCSSCHHHHHH
T ss_pred c-CCCEEEEEeCCHHHHHHHHHhhcccCC-CCccCHHHHHHHHHHHHHHH---HHHHHhcC-CcEEEEeCCCCCHHHHHH
Confidence 2 589999999999886644 6 3 432 012233332 234443332 23444532 347889 99999999999
Q ss_pred HHHHHH
Q psy11031 152 DFRTAV 157 (520)
Q Consensus 152 ~i~~~l 157 (520)
+|.+.+
T Consensus 188 ~I~~~l 193 (194)
T 1nks_A 188 EIIRSM 193 (194)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998765
No 138
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.81 E-value=0.00064 Score=64.97 Aligned_cols=144 Identities=9% Similarity=0.033 Sum_probs=86.9
Q ss_pred cccCcccCcHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHh---cC--C---CCCcEEEeC----------CCCCH--H
Q psy11031 11 LLDFPSHRNPLKMFNLFVSEEVKDFSFLSSKTVTEVLMLEMK---MS--P---AAKAFLISG----------YPRNM--R 70 (520)
Q Consensus 11 ~~~~~~h~s~G~~l~~~i~~G~~~g~lVPdelv~~ll~~~l~---~~--~---~~~G~ILDG----------FPRt~--~ 70 (520)
+...|..+.+|..+++++.+|. ...+-|.....=....|.. +. + ...-+|.|= +-|.+ +
T Consensus 39 ~~~~p~~~~~g~~i~~~l~~~~-~~~~~~~~~~llf~a~R~~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~ 117 (213)
T 4edh_A 39 LTREPGGTPLAERIRELLLAPS-DEPMAADTELLLMFAARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEA 117 (213)
T ss_dssp EEESSCSSHHHHHHHHHHHSCC-SSCCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHH
T ss_pred cccCCCCCHHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHH
Confidence 4456777889999999999874 1123332222111122211 10 1 234456674 33433 2
Q ss_pred hHHH---HHHhcCCcCEEEEEEcCHHHHHHHhh-hCccCCccch--HHHHHHH-HHHHhccchHHHHhhhCCcEEEEeCC
Q psy11031 71 DVVE---YSDKIKTINGVILIAWRQSLLERQID-YGAKLGHVIL--SLARMEL-ANFYQNVTPVTDFFDQRGMLIAVNGE 143 (520)
Q Consensus 71 QA~~---~~~~~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d~--e~i~~Rl-~~Y~~~t~pvi~~Y~~~~~l~~Ida~ 143 (520)
.... +...+..||++|+|+||.+++.+|+. |+. ..|.+. ....+|+ +.|.+ +.+.|.. .++.|||+
T Consensus 118 ~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~-~dr~E~~~~~~~~rv~~~y~~----l~~~~~~--~~~vIDa~ 190 (213)
T 4edh_A 118 RIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGR-LDRFEQEDRRFFEAVRQTYLQ----RAAQAPE--RYQVLDAG 190 (213)
T ss_dssp HHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSS-CCTTTTSCHHHHHHHHHHHHH----HHHHCTT--TEEEEETT
T ss_pred HHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCC-cCcccccHHHHHHHHHHHHHH----HHHHCCC--cEEEEeCC
Confidence 2211 22234689999999999999999994 432 123332 2344454 44543 3455543 49999999
Q ss_pred CChHHHHHHHHHHHHHHhc
Q psy11031 144 RNPVEVYADFRTAVLKILN 162 (520)
Q Consensus 144 ~~~eeV~~~i~~~l~~~~~ 162 (520)
+++++|+++|.+.|...+.
T Consensus 191 ~s~eeV~~~I~~~l~~~l~ 209 (213)
T 4edh_A 191 LPLAEVQAGLDRLLPNLLE 209 (213)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 9999999999999988763
No 139
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=97.81 E-value=0.00014 Score=69.60 Aligned_cols=141 Identities=8% Similarity=-0.003 Sum_probs=84.2
Q ss_pred ccCcccCcHHHHHHHHHHccCC-CCCCCCHHH-H-----------HHHHHHHHhcCCCCCcEEEe----------CCCCC
Q psy11031 12 LDFPSHRNPLKMFNLFVSEEVK-DFSFLSSKT-V-----------TEVLMLEMKMSPAAKAFLIS----------GYPRN 68 (520)
Q Consensus 12 ~~~~~h~s~G~~l~~~i~~G~~-~g~lVPdel-v-----------~~ll~~~l~~~~~~~G~ILD----------GFPRt 68 (520)
..-|..+.+|..+++++..+.. ....+.... . .+.|...|. ...-+|.| |+=|.
T Consensus 38 ~rep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~~~~~~~i~paL~---~g~~VI~DRy~~S~~AYq~~~~g 114 (213)
T 4tmk_A 38 TREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQLVETVIKPALA---NGTWVIGDRHDLSTQAYQGGGRG 114 (213)
T ss_dssp EESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHHHHHHTHHHHHH---TTCEEEEECCHHHHHHHTTTTTC
T ss_pred eeCCCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHHHHHHHHHHHHHH---CCCEEEEcCcHhHHHHHcccccC
Confidence 4467778899999999984321 011233321 1 122222232 23445777 33333
Q ss_pred HHh-----HHHHHHhcCCcCEEEEEEcCHHHHHHHh-hhCccCCccc--hHHHHHHHH-HHHhccchHHHHhhhCCcEEE
Q psy11031 69 MRD-----VVEYSDKIKTINGVILIAWRQSLLERQI-DYGAKLGHVI--LSLARMELA-NFYQNVTPVTDFFDQRGMLIA 139 (520)
Q Consensus 69 ~~Q-----A~~~~~~~~~pd~VI~L~~pd~~l~~Rl-~rg~~~~r~d--~e~i~~Rl~-~Y~~~t~pvi~~Y~~~~~l~~ 139 (520)
+.. ...+...+..||++|+|+||.+++.+|+ .|+.. .|.+ .....+|+. .|.+- .+.+ +.++.
T Consensus 115 ~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R~~~-dr~E~~~~~f~~rv~~~y~~l----a~~~---~~~~v 186 (213)
T 4tmk_A 115 IDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGEL-DRIEQESFDFFNRTRARYLEL----AAQD---KSIHT 186 (213)
T ss_dssp CCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHSSC-CTTTTSCHHHHHHHHHHHHHH----HHTC---TTEEE
T ss_pred CCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCc-cchhhhHHHHHHHHHHHHHHH----HHHC---CcEEE
Confidence 221 2222223568999999999999999999 46432 3332 122333433 44432 1222 56999
Q ss_pred EeCCCChHHHHHHHHHHHHHHhcc
Q psy11031 140 VNGERNPVEVYADFRTAVLKILNK 163 (520)
Q Consensus 140 Ida~~~~eeV~~~i~~~l~~~~~~ 163 (520)
|||++++++|+++|.+.|...+.+
T Consensus 187 IDa~~s~eeV~~~I~~~l~~~l~~ 210 (213)
T 4tmk_A 187 IDATQPLEAVMDAIRTTVTHWVKE 210 (213)
T ss_dssp EETTSCHHHHHHHHHHHHHHHHHT
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999987743
No 140
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=97.80 E-value=0.00019 Score=77.32 Aligned_cols=292 Identities=11% Similarity=0.090 Sum_probs=146.6
Q ss_pred cCCcCEEEEEEcCHHHHHHHhh-hCcc------CCccchHHHHHHHHHHHhccchHHHHhhhC-CcEEEEeCCC---ChH
Q psy11031 79 IKTINGVILIAWRQSLLERQID-YGAK------LGHVILSLARMELANFYQNVTPVTDFFDQR-GMLIAVNGER---NPV 147 (520)
Q Consensus 79 ~~~pd~VI~L~~pd~~l~~Rl~-rg~~------~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~-~~l~~Ida~~---~~e 147 (520)
.+.+++.++|+++.++..+|+. +... ....|.+ -..+...|.+.-...+..=... .-.+.|||+. ...
T Consensus 145 ~g~~i~KffL~is~eeq~kRl~~R~~~p~k~Wk~s~~D~~-~~~~~~~Y~~a~e~~l~~T~t~~APW~vI~a~dk~~arl 223 (500)
T 3czp_A 145 EGALLFKFWFHLSKKQLKERLKALEKDPQHSWKLSPLDWK-QSEVYDRFVHYGERVLRRTSRDYAPWYVVEGADERYRAL 223 (500)
T ss_dssp TTCEEEEEEEECCHHHHHHCC-------------CSSCTT-SHHHHHHHHHHHHHHHHHHCBTTBCEEEEECSCHHHHHH
T ss_pred CCCeEEEEEEECCHHHHHHHHHHHhcCCcccCCCCHHHHH-HHHhHHHHHHHHHHHHHhhcCCCCCEEEEECCCcchhHH
Confidence 4578899999999999999984 3211 0111221 1345566655544444432222 2478999997 457
Q ss_pred HHHHHHHHHHHHHhccCCCC--CCCCCCCCCCCCCCCCCCCccccccccccCCCCCC-CCC----CCCcccCcccccccc
Q psy11031 148 EVYADFRTAVLKILNKNNVV--PGSKPLVNGNAIPVPETLPPQVQSIAATVHSPPKH-FTR----PNGVVSEPYRKIKSV 220 (520)
Q Consensus 148 eV~~~i~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~ 220 (520)
.|.+.|.+.|...+...... ....++.. ...+..+.+..++.... .... ++. +...+..-+-. .-
T Consensus 224 ~v~~~il~~l~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~-~~k~~y~~~l~~l~~~L~~lQ~~--~~ 295 (500)
T 3czp_A 224 TVGRILLEGLQAALATKERAKRQPHAAPLV-----SSLDNRGLLDSLDLGQY-LDKDAYKEQLAAEQARLAGLIRD--KR 295 (500)
T ss_dssp HHHHHHHHHHHHHHHC----------------------CTTHHHHTCCTTCC-CCHHHHHHHHHHHHHHHHHHHHS--GG
T ss_pred HHHHHHHHHHHHHHHhcccccccccCCCcc-----cCcccccccccCCCCCC-CCHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 88888888888877431100 00000000 00010111111111000 0000 000 00000000000 01
Q ss_pred CCCCCeEEEEEcCCCCChhHHHHHHHhhCC--CCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHH
Q psy11031 221 ERNTPLVVWVVGGPGSSKSEMCQKVLQDYP--NWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVY 298 (520)
Q Consensus 221 ~~~~p~~I~vlG~PGSGKsT~a~~La~k~~--g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~ 298 (520)
....+.+|++.|..||||++++++|.+.+. |+..++++ . ++.. +..+.++ .
T Consensus 296 ~~~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~--------~-Pt~~---E~~~~yl---------------~ 348 (500)
T 3czp_A 296 FRQHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIA--------A-PTEE---ERAQPYL---------------W 348 (500)
T ss_dssp GGGCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECC--------S-CCHH---HHTSCTT---------------H
T ss_pred hCCCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeC--------C-CChh---hhcchHH---------------H
Confidence 235788999999999999999999998751 33333331 1 0111 1111122 2
Q ss_pred HHHhccccCCCcEEEEeCCC-------------------CCHHHHHHHHhhcC---CCCCEEEecCChhhhhc---cCC-
Q psy11031 299 AEMKKTKYTEADGIVIDGFP-------------------REMSQLIDFENKYQ---IHPPMILIDCSKLVLHK---GQI- 352 (520)
Q Consensus 299 ~~l~~~~~~~~~G~ILDGFP-------------------rt~~Qae~l~~~~~---~p~~VI~Ld~~~~~~~r---~R~- 352 (520)
.... +.+..+.-.|.|++- +-++++..||..+. .+...|||+++.+...+ .|.
T Consensus 349 R~~~-~lP~~G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~eeQ~~R~~~R~~ 427 (500)
T 3czp_A 349 RFWR-HIPARRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQMERFKEREK 427 (500)
T ss_dssp HHHT-TCCCTTCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred HHHH-hCCCCCeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCHHHHHHHHHHHhc
Confidence 2333 234446667888651 12356667766543 34557999999875321 110
Q ss_pred --C----CCHHHH--HHHHHHHHHHhHHHHHHhhhC-CCEEEEECCCC---HHHHHHHHHHHHHHHH
Q psy11031 353 --D----NSVSAF--RRRLELFRERTLPMLRAMDVE-TRLTIVDGDTQ---LPQVREEFERVLKKII 407 (520)
Q Consensus 353 --d----D~~e~~--~~Rl~~f~~~~~~l~~~y~~~-~~l~~IDa~~~---~e~V~~~I~~~I~~~i 407 (520)
+ -++.-+ ..+.+.|.+....++..-+.. ..+++|+|+.. .-.|.+.|.+.|...+
T Consensus 428 ~p~k~Wk~s~~D~~~~~~w~~y~~a~~~~l~~T~t~~APW~vI~a~dk~~arl~v~~~i~~~l~~~l 494 (500)
T 3czp_A 428 TPYKRYKITEEDWRNRDKWDQYVDAVGDMVDRTSTEIAPWTLVEANDKRFARVKVLRTINDAIEAAY 494 (500)
T ss_dssp SSCTTSCCCSSTTTGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCCCHHHHHHHHhHHHHHHHHHHHHHHhccCCCCEEEEECCCccchHHHHHHHHHHHHHHHH
Confidence 0 111112 245677887777777665433 36999999974 3456666666666555
No 141
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=97.77 E-value=8.2e-05 Score=76.19 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
++.+|+|.|+-||||||+++.|++.+
T Consensus 6 ~~~fI~~EG~dGaGKTT~~~~La~~L 31 (334)
T 1p6x_A 6 TIVRIYLDGVYGIGKSTTGRVMASAA 31 (334)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHSGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999999986
No 142
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.71 E-value=2.9e-05 Score=82.95 Aligned_cols=109 Identities=12% Similarity=0.115 Sum_probs=60.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhC----CCCeeeehhhHHhhhhcccccCCcchHHHHhhhhc-CC---ccchHHHH
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDY----PNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSA-GD---FVNRDVVL 294 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~----~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~-G~---~vPd~lv~ 294 (520)
..+.+|+|+|.|||||||++++|++.+ ....+++.+++.+ ... .... ...+++. |+ ..-...+.
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~---~~~-g~~~----~~~ifd~~g~~~~r~re~~~~ 108 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRR---DMV-KTYK----SFEFFLPDNEEGLKIRKQCAL 108 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH---HHH-CSCC----CGGGGCTTCHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhh---hhc-cCCC----cccccCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999874 1345666766554 211 1100 0011221 11 01112223
Q ss_pred HHH---HHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCC-CEEEecC
Q psy11031 295 DIV---YAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHP-PMILIDC 342 (520)
Q Consensus 295 ~ll---~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~-~VI~Ld~ 342 (520)
..+ ...+. ...+.++|+|...++.++.+.+.+.+.... .+++|+|
T Consensus 109 ~~l~~~~~~l~---~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~ 157 (469)
T 1bif_A 109 AALNDVRKFLS---EEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVES 157 (469)
T ss_dssp HHHHHHHHHHH---TTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHHHHH---hCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEE
Confidence 333 33332 134668999998888876666643332212 4677763
No 143
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.66 E-value=0.0004 Score=64.48 Aligned_cols=128 Identities=10% Similarity=0.084 Sum_probs=80.6
Q ss_pred cCcHHHHHHHHHHccCCCCCCCCHHHHHHHH------------HHHHhcCCCCCcEEEeCCCCCHH-----------hHH
Q psy11031 17 HRNPLKMFNLFVSEEVKDFSFLSSKTVTEVL------------MLEMKMSPAAKAFLISGYPRNMR-----------DVV 73 (520)
Q Consensus 17 h~s~G~~l~~~i~~G~~~g~lVPdelv~~ll------------~~~l~~~~~~~G~ILDGFPRt~~-----------QA~ 73 (520)
....|..+++++.++. .++.... .++ ...+. ....+|+|+||++.. ...
T Consensus 42 ~~~~g~~i~~~~~~~~----~~~~~~~-~~l~~~~r~~~~~~i~~~l~---~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~ 113 (204)
T 2v54_A 42 STVTGKMIDDYLTRKK----TYNDHIV-NLLFCANRWEFASFIQEQLE---QGITLIVDRYAFSGVAYAAAKGASMTLSK 113 (204)
T ss_dssp TSHHHHHHHHHHTSSC----CCCHHHH-HHHHHHHHHTTHHHHHHHHH---TTCEEEEESCHHHHHHHHHHTTCCHHHHH
T ss_pred CCcHHHHHHHHHhcCC----CCCHHHH-HHHHHHHHHHHHHHHHHHHH---CCCEEEEECchhhHHHHHHccCCCHHHHH
Confidence 3457899999887654 4554422 332 12222 235689999998632 122
Q ss_pred HHHHhcCCcCEEEEEEcCHHHHHHHhhhCccCCccchHHHHHHHHH-HHhccchHHHHhhhCCcEEEEeCCCChHHHHHH
Q psy11031 74 EYSDKIKTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMELAN-FYQNVTPVTDFFDQRGMLIAVNGERNPVEVYAD 152 (520)
Q Consensus 74 ~~~~~~~~pd~VI~L~~pd~~l~~Rl~rg~~~~r~d~e~i~~Rl~~-Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~ 152 (520)
.+......||.||+|+||.+++.+ .|+. .+.+.+.+.+|+.. |.+... .|. +.++.||+++++++|+++
T Consensus 114 ~~~~~~~~~d~vi~l~~~~e~~~~--~R~~--d~~e~~~~~~rl~~~y~~~~~----~~~--~~~~~Id~~~~~~~v~~~ 183 (204)
T 2v54_A 114 SYESGLPKPDLVIFLESGSKEINR--NVGE--EIYEDVTFQQKVLQEYKKMIE----EGD--IHWQIISSEFEEDVKKEL 183 (204)
T ss_dssp HHHTTSBCCSEEEEECCCHHHHTT--CCSS--STTCCSHHHHHHHHHHHHHHT----TCS--SCEEEECTTSCHHHHHHH
T ss_pred HHhcCCCCCCEEEEEeCCHHHHHh--hcCc--ccccHHHHHHHHHHHHHHHHH----hCC--CcEEEEECCCCHHHHHHH
Confidence 222223479999999999998776 3331 12222356677765 443321 222 347899999999999999
Q ss_pred HHHHHHHHhc
Q psy11031 153 FRTAVLKILN 162 (520)
Q Consensus 153 i~~~l~~~~~ 162 (520)
|.+.+...+.
T Consensus 184 i~~~l~~~l~ 193 (204)
T 2v54_A 184 IKNIVIEAIH 193 (204)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988773
No 144
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.65 E-value=0.00012 Score=69.38 Aligned_cols=94 Identities=12% Similarity=0.061 Sum_probs=58.2
Q ss_pred CCCcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHhh-----hCccCCcc--chHHHHHHHH-HHHhccchH
Q psy11031 56 AAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQID-----YGAKLGHV--ILSLARMELA-NFYQNVTPV 127 (520)
Q Consensus 56 ~~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl~-----rg~~~~r~--d~e~i~~Rl~-~Y~~~t~pv 127 (520)
...|+|+||+. +.++ ....++.+|+|+|+.+++.+|.. ||.. ... ..+.+.+|+. .|.+.+.|+
T Consensus 122 ~~~~~vldg~~--~~~~-----~~~~~d~~i~l~~~~e~~~~R~~~~l~~rg~~-~~~~~~~~~i~~R~~~~~~~~~~pl 193 (227)
T 1cke_A 122 ELPGLIADGRD--MGTV-----VFPDAPVKIFLDASSEERAHRRMLQLQVKGFS-VNFERLLAEIKERDDRDRNRAVAPL 193 (227)
T ss_dssp CTTCEEEEESS--CCCC-----CCTTCSEEEEEECCHHHHHHHHHHHHHHHTCC-CCHHHHHHHHC-------------C
T ss_pred hCCCEEEECCC--ccce-----EecCCCEEEEEeCCHHHHHHHHHHHHHhCCcc-CCHHHHHHHHHHHHHhhhhhcccCc
Confidence 46799999984 3332 22468999999999999888842 3221 011 1344566654 577777787
Q ss_pred HHHhhhCCcEEEEeCC-CChHHHHHHHHHHHHHHh
Q psy11031 128 TDFFDQRGMLIAVNGE-RNPVEVYADFRTAVLKIL 161 (520)
Q Consensus 128 i~~Y~~~~~l~~Ida~-~~~eeV~~~i~~~l~~~~ 161 (520)
..+|.. +.||++ .++++|+++|.+.+...+
T Consensus 194 ~~~~~~----~~Id~~~~~~~ev~~~I~~~l~~~~ 224 (227)
T 1cke_A 194 VPAADA----LVLDSTTLSIEQVIEKALQYARQKL 224 (227)
T ss_dssp CCCTTC----EEEETTTSCHHHHHHHHHHHHHHHH
T ss_pred cCCCCE----EEEeCCCCCHHHHHHHHHHHHHHhh
Confidence 766642 689999 899999999999998765
No 145
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=97.57 E-value=0.00028 Score=72.42 Aligned_cols=28 Identities=14% Similarity=0.146 Sum_probs=24.9
Q ss_pred CCCCeEEEEEcCCCCChhHHH-HHHHhhC
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMC-QKVLQDY 249 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a-~~La~k~ 249 (520)
..+..+|+|.|+-||||||++ +.|++.+
T Consensus 9 ~~~~~~I~iEG~~GaGKTT~~~~~L~~~l 37 (341)
T 1osn_A 9 KMGVLRIYLDGAYGIGKTTAAEEFLHHFA 37 (341)
T ss_dssp CEEEEEEEEEESSSSCTTHHHHHHHHTTT
T ss_pred cCCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 445789999999999999999 9999876
No 146
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.53 E-value=0.00047 Score=64.49 Aligned_cols=130 Identities=8% Similarity=0.049 Sum_probs=76.4
Q ss_pred CcHHHHHHHHHHccCCCCCCCCHHHHHHH-----------HHHHHhcCCCCCcEEEe-----CCCCCHHh-------HHH
Q psy11031 18 RNPLKMFNLFVSEEVKDFSFLSSKTVTEV-----------LMLEMKMSPAAKAFLIS-----GYPRNMRD-------VVE 74 (520)
Q Consensus 18 ~s~G~~l~~~i~~G~~~g~lVPdelv~~l-----------l~~~l~~~~~~~G~ILD-----GFPRt~~Q-------A~~ 74 (520)
...|..+++++.++. .+++.....+ +...+. ....+|+| |||++..+ ...
T Consensus 50 ~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~r~~~~~~i~~~l~---~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~ 122 (215)
T 1nn5_A 50 TEIGKLLSSYLQKKS----DVEDHSVHLLFSANRWEQVPLIKEKLS---QGVTLVVDRYAFSGVAFTGAKENFSLDWCKQ 122 (215)
T ss_dssp SHHHHHHHHHHTTSS----CCCHHHHHHHHHHHHHTTHHHHHHHHH---TTCEEEEESCHHHHHHHHHTSTTCCHHHHHG
T ss_pred CcHHHHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHHHHHHHH---CCCEEEEeCCcccHHHHHhhcCCCCHHHHHH
Confidence 566888888887665 6777644322 222222 24568889 44543221 211
Q ss_pred HHHhcCCcCEEEEEEcCHHHHHHHhhhCccCCccchHHHHHHHHH-HHhccchHHHHhhhCCcEEEEeCCCChHHHHHHH
Q psy11031 75 YSDKIKTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMELAN-FYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADF 153 (520)
Q Consensus 75 ~~~~~~~pd~VI~L~~pd~~l~~Rl~rg~~~~r~d~e~i~~Rl~~-Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i 153 (520)
+......++++|+|+||.+++.+|+.++. .|.+.+.+.+|+.. |.+... .| ...++.||++.++++++++|
T Consensus 123 l~~~~~~~d~vi~l~~~~e~~~~Rl~r~~--~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~Id~~~~~e~~~~~i 194 (215)
T 1nn5_A 123 PDVGLPKPDLVLFLQLQLADAAKRGAFGH--ERYENGAFQERALRCFHQLMK----DT--TLNWKMVDASKSIEAVHEDI 194 (215)
T ss_dssp GGTTSBCCSEEEEEECCHHHHHHC-------CTTCSHHHHHHHHHHHHHHTT----CT--TSCEEEEETTSCHHHHHHHH
T ss_pred HHhCCCCCCEEEEEeCCHHHHHHHhccCc--cccchHHHHHHHHHHHHHHHH----hC--CCCEEEEECCCCHHHHHHHH
Confidence 22223468999999999999999996431 23322223344332 222111 11 13478999999999999999
Q ss_pred HHHHHHHhc
Q psy11031 154 RTAVLKILN 162 (520)
Q Consensus 154 ~~~l~~~~~ 162 (520)
.+.+...+.
T Consensus 195 ~~~l~~~l~ 203 (215)
T 1nn5_A 195 RVLSEDAIA 203 (215)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988763
No 147
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.45 E-value=0.00089 Score=61.15 Aligned_cols=139 Identities=4% Similarity=-0.072 Sum_probs=75.4
Q ss_pred CcccCcHHHHHHHHHHc-cC-----CCCCCCC--HHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHH-------HHHHh
Q psy11031 14 FPSHRNPLKMFNLFVSE-EV-----KDFSFLS--SKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVV-------EYSDK 78 (520)
Q Consensus 14 ~~~h~s~G~~l~~~i~~-G~-----~~g~lVP--delv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~-------~~~~~ 78 (520)
++ ++++|+.++.++.+ |. .-+.+.+ +..+..++.+.+.......+||+||++....++. .+...
T Consensus 34 ~~-~i~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~viid~~~~~~~~~~~~~~~~~~~~~~ 112 (192)
T 1kht_A 34 YK-MVSFGSVMFEVAKEENLVSDRDQMRKMDPETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNE 112 (192)
T ss_dssp CE-EEEHHHHHHHHHHHTTSCSSGGGGSSCCHHHHHHHHHHHHHHHHHHHTTSCEEEECCSEEEETTEEEESSCHHHHHH
T ss_pred eE-EEehHHHHHHHHhccCCCCCHHHHhcCCHHHHHHHHHHHHHHHHhhccCCeEEEccceeccccccccccCcHHHHhc
Confidence 55 88999998887653 22 0111111 1233333333343212346899999986433321 11222
Q ss_pred cCCcCEEEEEEcCHHHHHH-HhhhCccCCcc--chHHHHHHHHHHHhccchHHHHhhhCCcEEEE-eCCCChHHHHHHHH
Q psy11031 79 IKTINGVILIAWRQSLLER-QIDYGAKLGHV--ILSLARMELANFYQNVTPVTDFFDQRGMLIAV-NGERNPVEVYADFR 154 (520)
Q Consensus 79 ~~~pd~VI~L~~pd~~l~~-Rl~rg~~~~r~--d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~I-da~~~~eeV~~~i~ 154 (520)
..++++|+|+||.+++.+ |+..... +|. ..+.+..+.. ..+........|... .++.| |++++++++++.|.
T Consensus 113 -~~~~~~i~l~~~~~~~~~rRl~~~~R-~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~i~~~~~~~e~~~~~i~ 188 (192)
T 1kht_A 113 -LNPDLIIVVETTGDEILMRRMSDETR-VRDLDTASTIEQHQF-MNRCAAMSYGVLTGA-TVKIVQNRNGLLDQAVEELT 188 (192)
T ss_dssp -HCCSEEEEEECCHHHHHHHHHTSSSC-SSSCCCHHHHHHHHH-HHHHHHHHHHHHHCC-EEEEEECCTTCHHHHHHHHH
T ss_pred -cCCCEEEEEeCCHHHHHHHHhhhccc-CCCcCCHHHHHHHHH-HHHHHHHHHHHhcCC-cEEEEeCCCCCHHHHHHHHH
Confidence 157999999999999885 8842100 222 2333333333 223333334445332 24444 67677999999998
Q ss_pred HHH
Q psy11031 155 TAV 157 (520)
Q Consensus 155 ~~l 157 (520)
+.+
T Consensus 189 ~~i 191 (192)
T 1kht_A 189 NVL 191 (192)
T ss_dssp HHH
T ss_pred HHh
Confidence 765
No 148
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=97.44 E-value=0.00089 Score=68.39 Aligned_cols=26 Identities=27% Similarity=0.244 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
...+|+|.|+.||||||+++.|++.+
T Consensus 3 ~~~fI~~EG~dGsGKTT~~~~La~~L 28 (331)
T 1e2k_A 3 TLLRVYIDGPHGMGKTTTTQLLVALG 28 (331)
T ss_dssp EEEEEEECSCTTSSHHHHHHHHTC--
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999999875
No 149
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=97.43 E-value=0.001 Score=66.99 Aligned_cols=144 Identities=10% Similarity=0.079 Sum_probs=83.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCC--CCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHH
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYP--NWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAE 300 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~--g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~ 300 (520)
..+.+|+|.|..||||||++++|.+.+. |+..+++ + .+-+..+.. .++...
T Consensus 84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~----~---------~Pt~eE~~~--------------~yl~R~ 136 (304)
T 3czq_A 84 GKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVAL----T---------KPTETERGQ--------------WYFQRY 136 (304)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEEC----C---------SCCHHHHTS--------------CTTHHH
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEe----C---------CcChHHHhc--------------hHHHHH
Confidence 4589999999999999999999998761 2333332 1 111222211 011222
Q ss_pred HhccccCCCcEEEEeCCC-------------------CCHHHHHHHHhhc---CCCCCEEEecCChhhhh-c--cCCC--
Q psy11031 301 MKKTKYTEADGIVIDGFP-------------------REMSQLIDFENKY---QIHPPMILIDCSKLVLH-K--GQID-- 353 (520)
Q Consensus 301 l~~~~~~~~~G~ILDGFP-------------------rt~~Qae~l~~~~---~~p~~VI~Ld~~~~~~~-r--~R~d-- 353 (520)
.. +.+..+.-+|.|+|- +-+.++..||..+ +.+...|||+++.+... | .|.+
T Consensus 137 ~~-~LP~~G~IvIfDRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq~kR~~~R~~dp 215 (304)
T 3czq_A 137 VA-TFPTAGEFVLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKRFHDRRHDP 215 (304)
T ss_dssp HT-TCCCTTCEEEEEECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHHHHHHHHHHHCT
T ss_pred HH-hcccCCeEEEEECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHHHHHHHHhhcCc
Confidence 22 123456678888762 1234666665553 34566899999987532 1 1211
Q ss_pred -----CCHHHHH--HHHHHHHHHhHHHHHHhhh-CCCEEEEECCCCHHH
Q psy11031 354 -----NSVSAFR--RRLELFRERTLPMLRAMDV-ETRLTIVDGDTQLPQ 394 (520)
Q Consensus 354 -----D~~e~~~--~Rl~~f~~~~~~l~~~y~~-~~~l~~IDa~~~~e~ 394 (520)
-+..-++ .++..|.+....++..-+. ...+++|||+.....
T Consensus 216 ~k~Wk~s~~D~~~~~~~~~y~~a~~~ml~~T~t~~apW~vIda~dk~~a 264 (304)
T 3czq_A 216 LKIWKLSPMDIAALSKWDDYTGKRDRMLKETHTEHGPWAVIRGNDKRRS 264 (304)
T ss_dssp TTGGGCCHHHHHGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEEECCCcchH
Confidence 1333333 3456777776666665432 246999999986543
No 150
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=97.42 E-value=0.0017 Score=67.27 Aligned_cols=28 Identities=25% Similarity=0.196 Sum_probs=23.6
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
..+..+|+|.|+.||||||+++.|++.+
T Consensus 46 ~~~~~fIt~EG~dGsGKTT~~~~Lae~L 73 (376)
T 1of1_A 46 MPTLLRVYIDGPHGMGKTTTTQLLVALG 73 (376)
T ss_dssp CCEEEEEEECSSTTSSHHHHHHHHHC--
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467889999999999999999999875
No 151
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=97.38 E-value=0.00062 Score=66.52 Aligned_cols=98 Identities=12% Similarity=0.190 Sum_probs=67.1
Q ss_pred eCCCCCHHhH---HHHHH---h----cCCcCEEEEEEcCHHHHHHHh-hhCccC--Cccc--hHHHHHHHHHHHhc--cc
Q psy11031 63 SGYPRNMRDV---VEYSD---K----IKTINGVILIAWRQSLLERQI-DYGAKL--GHVI--LSLARMELANFYQN--VT 125 (520)
Q Consensus 63 DGFPRt~~QA---~~~~~---~----~~~pd~VI~L~~pd~~l~~Rl-~rg~~~--~r~d--~e~i~~Rl~~Y~~~--t~ 125 (520)
+|++++..|- ..+.. . ...||+||+|++|.+++.+|+ .|+... +..+ .+.+..+++.|.++ +.
T Consensus 146 ~~~~~~~~e~~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~Ri~~R~r~~~~~~~~~~~~~l~~~~~~~~~~~~v~ 225 (263)
T 1p5z_B 146 ESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLK 225 (263)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred HcCCCCHHHHHHHHHHHHHHHHhhhccCCCCeEEEEECCHHHHHHHHHhcCCccccCccHHHHHHHHHHHHHHHhhccch
Confidence 3888887641 11211 1 237999999999999999998 454321 1111 44556677777654 44
Q ss_pred hHHHHhhhCCcEEEEeCCCChHHHHHHHHHHHHHHh
Q psy11031 126 PVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLKIL 161 (520)
Q Consensus 126 pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l~~~~ 161 (520)
+...+|.+ +.++.|||++++++|+++|.+.|...+
T Consensus 226 ~~y~~~~~-~~~~~Id~~~~~eev~~~I~~~l~~~l 260 (263)
T 1p5z_B 226 TNFDYLQE-VPILTLDVNEDFKDKYESLVEKVKEFL 260 (263)
T ss_dssp CSCGGGGG-SCEEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcc-CCEEEEECCCCHHHHHHHHHHHHHHHH
Confidence 45455544 458999999999999999999998765
No 152
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.37 E-value=0.00041 Score=62.81 Aligned_cols=107 Identities=10% Similarity=-0.014 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHh---cCCcCEEEEEEcCHHHHHHHhh-hCccCCccchHHHHHH
Q psy11031 41 KTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDK---IKTINGVILIAWRQSLLERQID-YGAKLGHVILSLARME 116 (520)
Q Consensus 41 elv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~---~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d~e~i~~R 116 (520)
+++.+++...+.......++|+||++++..+...+.+. ...+..+|+|+||.+++.+|+. |+. ....++.+.++
T Consensus 62 ~~~~~~~~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~--~~~~~~~i~~~ 139 (181)
T 1ly1_A 62 GMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT--KAVPIDVLRSM 139 (181)
T ss_dssp HHHHHHHHHHHTSCSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGG--GCCCHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhcccc--CCCCHHHHHHH
Confidence 34455666666332356899999999998887555532 2235579999999999999994 432 12347888999
Q ss_pred HHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHHHHH
Q psy11031 117 LANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLK 159 (520)
Q Consensus 117 l~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l~~ 159 (520)
+..|.... .|. .+.||++.+ ++|..+|...+..
T Consensus 140 ~~~~~~~~-----~~~----~~~id~~~~-~~v~~~i~~~l~~ 172 (181)
T 1ly1_A 140 YKSMREYL-----GLP----VYNGTPGKP-KAVIFDVDGTLAK 172 (181)
T ss_dssp HHHHHHHH-----TCC----CC---------------------
T ss_pred HHHhhccC-----CCC----ccccCCCCC-ceeeehhhhhhhc
Confidence 99998762 122 223888885 8888888776654
No 153
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.35 E-value=0.00016 Score=66.68 Aligned_cols=161 Identities=12% Similarity=0.095 Sum_probs=81.3
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCCCC--eeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHH
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNW--TQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYA 299 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~--~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~ 299 (520)
...+.+|+|+|+|||||||+++.|+..+ +. .+++.+++.. .. ..+...+ ++.... .+...+.+.+..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~-~~g~i~i~~d~~~~---~~-~~~~~~~-----~~~~~~-~~~~~v~~~l~~ 74 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLP-GVPKVHFHSDDLWG---YI-KHGRIDP-----WLPQSH-QQNRMIMQIAAD 74 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCS-SSCEEEECTTHHHH---TC-CSSCCCT-----TSSSHH-HHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhcc-CCCeEEEcccchhh---hh-hcccccC-----Cccchh-hhhHHHHHHHHH
Confidence 3456789999999999999999999874 54 4777766655 21 1111000 110000 012233333322
Q ss_pred HHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChhhhh-----ccCC-CCCHHHHHHHHHHHHHHhHHH
Q psy11031 300 EMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLH-----KGQI-DNSVSAFRRRLELFRERTLPM 373 (520)
Q Consensus 300 ~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~~~~-----r~R~-dD~~e~~~~Rl~~f~~~~~~l 373 (520)
.... ....+..+++|++.+.. +...+... ..+..++++.++..++. +.+. ..+.+.++. ..+...++
T Consensus 75 ~~~~-~~~~~~~~~~~~~~~~~-~l~~~~~~-~~~~~~ls~~~~~~v~~~R~~~r~~~~lld~~~~~~----~~~~~~~l 147 (191)
T 1zp6_A 75 VAGR-YAKEGYFVILDGVVRPD-WLPAFTAL-ARPLHYIVLRTTAAEAIERCLDRGGDSLSDPLVVAD----LHSQFADL 147 (191)
T ss_dssp HHHH-HHHTSCEEEECSCCCTT-TTHHHHTT-CSCEEEEEEECCHHHHHHHHHTTCTTSCCCHHHHHH----HHHHTTCC
T ss_pred HHHH-HhccCCeEEEeccCcHH-HHHHHHhc-CCCeEEEEecCCHHHHHHHHHhcCCCccCCHHHHHH----HHHHHhcc
Confidence 2110 11124468899976542 22223321 22335788999886531 2211 112332222 12222222
Q ss_pred HHHhhhCCCEEEEECC-CCHHHHHHHHHHHHHH
Q psy11031 374 LRAMDVETRLTIVDGD-TQLPQVREEFERVLKK 405 (520)
Q Consensus 374 ~~~y~~~~~l~~IDa~-~~~e~V~~~I~~~I~~ 405 (520)
.. |. . ++||.+ .+++++++.|.+.|..
T Consensus 148 ~~-~~---~-~~i~t~~~~~~~~~~~i~~~l~~ 175 (191)
T 1zp6_A 148 GA-FE---H-HVLPVSGKDTDQALQSAINALQS 175 (191)
T ss_dssp GG-GG---G-GEEECTTCCTTTTTTTTHHHHHH
T ss_pred Cc-cc---c-cEEECCCCCHHHHHHHHHHHHHh
Confidence 11 21 1 357765 6888888888777653
No 154
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.31 E-value=0.0019 Score=59.51 Aligned_cols=75 Identities=12% Similarity=-0.035 Sum_probs=55.6
Q ss_pred CCcCEEEEEEcCHHHHHHHhh-hCccCCccch----HHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHH
Q psy11031 80 KTINGVILIAWRQSLLERQID-YGAKLGHVIL----SLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFR 154 (520)
Q Consensus 80 ~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d~----e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~ 154 (520)
..++.+|+|+||.+++.+|+. |+ |..+ +...+|+..++.. +.++|......+.||++.++++|+++|.
T Consensus 123 ~~~d~vi~L~~~~e~~~~Rl~~R~----r~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~Id~~~~~~~v~~~I~ 195 (205)
T 2jaq_A 123 LSFDIVIYLRVSTKTAISRIKKRG----RSEELLIGEEYWETLNKNYEE---FYKQNVYDFPFFVVDAELDVKTQIELIM 195 (205)
T ss_dssp CCCSEEEEEECCHHHHHHHHHHHT----CHHHHHSCHHHHHHHHHHHHH---HHHHHTTTSCEEEEETTSCHHHHHHHHH
T ss_pred CCCCEEEEEeCCHHHHHHHHHHcC----ChhhhcCcHHHHHHHHHHHHH---HHHHccccCcEEEEECCCCHHHHHHHHH
Confidence 468999999999999999994 43 3321 2345666665553 5667764455899999999999999999
Q ss_pred HHHHHHh
Q psy11031 155 TAVLKIL 161 (520)
Q Consensus 155 ~~l~~~~ 161 (520)
+.+..+.
T Consensus 196 ~~l~~~~ 202 (205)
T 2jaq_A 196 NKLNSIK 202 (205)
T ss_dssp HHHHHC-
T ss_pred HHHHHhc
Confidence 9987543
No 155
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.30 E-value=0.00069 Score=73.88 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
..+.+|+|+|++||||||+++.|+..+
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhh
Confidence 356789999999999999999999875
No 156
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.24 E-value=0.00017 Score=73.54 Aligned_cols=36 Identities=17% Similarity=0.376 Sum_probs=33.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHH
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLL 261 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLl 261 (520)
++.|+|+||+||||||+|..|++++ ++.++|++.+.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l-~~~iis~Ds~q 40 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADAL-PCELISVDSAL 40 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS-CEEEEEECTTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc-CCcEEeccchh
Confidence 5689999999999999999999998 99999998764
No 157
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.16 E-value=0.007 Score=56.24 Aligned_cols=96 Identities=9% Similarity=0.060 Sum_probs=68.9
Q ss_pred CCCcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHhh-hCccCCccchHHHHHHHHHHHhccchHHHHhhhC
Q psy11031 56 AAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQID-YGAKLGHVILSLARMELANFYQNVTPVTDFFDQR 134 (520)
Q Consensus 56 ~~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~ 134 (520)
...++|+|+......+...+......+..+|+|+||.+++.+|+. |+.. ..+.+.+.+.+..+. ++ |. .
T Consensus 85 ~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~--~~~~~~~~~~~~~~~----~~---~~-~ 154 (202)
T 3t61_A 85 SREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGH--FMPSSLLQTQLETLE----DP---RG-E 154 (202)
T ss_dssp SSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSS--CCCHHHHHHHHHHCC----CC---TT-S
T ss_pred cCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhcc--CCCHHHHHHHHHhcC----CC---CC-C
Confidence 467899999998888876666655566899999999999999994 4321 123444555444443 22 22 2
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHHHHh
Q psy11031 135 GMLIAVNGERNPVEVYADFRTAVLKIL 161 (520)
Q Consensus 135 ~~l~~Ida~~~~eeV~~~i~~~l~~~~ 161 (520)
...+.||++.+++++.++|.+.|...-
T Consensus 155 ~~~~~Id~~~~~~e~~~~I~~~l~~~~ 181 (202)
T 3t61_A 155 VRTVAVDVAQPLAEIVREALAGLARLA 181 (202)
T ss_dssp TTEEEEESSSCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEeCCCCHHHHHHHHHHHHHHhh
Confidence 237789999999999999999998644
No 158
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.11 E-value=0.0082 Score=57.44 Aligned_cols=163 Identities=18% Similarity=0.244 Sum_probs=84.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCC-CeeeehhhHHhhhhcccccCCc---c-hHHHHhhhh----------cCCc
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPN-WTQISLGKLLRYFANIEDDGEG---L-NSRIKSSVS----------AGDF 287 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g-~~~is~gdLlr~~~~~~~~~t~---~-g~~i~~~l~----------~G~~ 287 (520)
....+++|+||.||||||+++.|+..++. -...++.---|........+.. . ......... .|..
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~ 93 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNY 93 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhcc
Confidence 34678999999999999999999987621 0111211000100000000000 0 011111111 1111
Q ss_pred --cchHHHHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCCh-hhh-h--ccCCCCCHHHHHH
Q psy11031 288 --VNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSK-LVL-H--KGQIDNSVSAFRR 361 (520)
Q Consensus 288 --vPd~lv~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~-~~~-~--r~R~dD~~e~~~~ 361 (520)
.+.+ -+...+. .++-+|+| -+..-+..+.+.+. ....|++-.++ +.+ . ..|..++++.+.+
T Consensus 94 yg~~~~----~v~~~l~-----~G~illLD---LD~~~~~~i~~~l~-~~~tI~i~th~~~~l~~Rl~~rG~~~~e~i~~ 160 (219)
T 1s96_A 94 YGTSRE----AIEQVLA-----TGVDVFLD---IDWQGAQQIRQKMP-HARSIFILPPSKIELDRRLRGRGQDSEEVIAK 160 (219)
T ss_dssp EEEEHH----HHHHHHT-----TTCEEEEE---CCHHHHHHHHHHCT-TCEEEEEECSSHHHHHHHHHTTSCSCHHHHHH
T ss_pred CCCCHH----HHHHHHh-----cCCeEEEE---ECHHHHHHHHHHcc-CCEEEEEECCCHHHHHHHHHHcCCCCHHHHHH
Confidence 2222 2333333 35789999 66666666666665 34455554433 222 1 2455678999999
Q ss_pred HHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031 362 RLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK 405 (520)
Q Consensus 362 Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~ 405 (520)
|+....... .++..- ..+.+| .+.++-++++.+.|..
T Consensus 161 rl~~a~~e~----~~~~~~-d~~i~N--d~l~~a~~~l~~ii~~ 197 (219)
T 1s96_A 161 RMAQAVAEM----SHYAEY-DYLIVN--DDFDTALTDLKTIIRA 197 (219)
T ss_dssp HHHHHHHHH----TTGGGS-SEEEEC--SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----hhccCC-CEEEEC--cCHHHHHHHHHHHHHH
Confidence 987554332 222222 234444 4888888888888855
No 159
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.08 E-value=0.007 Score=55.13 Aligned_cols=101 Identities=21% Similarity=0.266 Sum_probs=59.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHH----HHHHH
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVV----LDIVY 298 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv----~~ll~ 298 (520)
..+.++.|+|++||||||+++.+. .|...++. +.++ ...... .|...-...+ .....
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~~---~~~~~~~~-d~~~---g~~~~~------------~~~~~~~~~~~~~~~~~~~ 67 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKHF---KPTEVISS-DFCR---GLMSDD------------ENDQTVTGAAFDVLHYIVS 67 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHHS---CGGGEEEH-HHHH---HHHCSS------------TTCGGGHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHc---cCCeEEcc-HHHH---HHhcCc------------ccchhhHHHHHHHHHHHHH
Confidence 346789999999999999999864 25666665 4444 222111 0111111111 11222
Q ss_pred HHHhccccCCCcEEEEeCCCCC---HHHHHHHHhhcCCCCCEEEecCChhhh
Q psy11031 299 AEMKKTKYTEADGIVIDGFPRE---MSQLIDFENKYQIHPPMILIDCSKLVL 347 (520)
Q Consensus 299 ~~l~~~~~~~~~G~ILDGFPrt---~~Qae~l~~~~~~p~~VI~Ld~~~~~~ 347 (520)
..+. .+...++|..... ..|.-.+-..+...+.+++||-|...+
T Consensus 68 ~~~~-----~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~L 114 (171)
T 4gp7_A 68 KRLQ-----LGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVC 114 (171)
T ss_dssp HHHH-----TTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHH
T ss_pred HHHh-----CCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHH
Confidence 2222 3456788875443 345556667777778899999987643
No 160
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.04 E-value=0.00044 Score=66.34 Aligned_cols=81 Identities=9% Similarity=0.048 Sum_probs=42.5
Q ss_pred cCCcCEEEEEEcCHHHHHHHh-hhCccCCccchHHHHHHHHHHHhccchHHHHh-hhCCcEEEEeCCCChHHHHHHHHHH
Q psy11031 79 IKTINGVILIAWRQSLLERQI-DYGAKLGHVILSLARMELANFYQNVTPVTDFF-DQRGMLIAVNGERNPVEVYADFRTA 156 (520)
Q Consensus 79 ~~~pd~VI~L~~pd~~l~~Rl-~rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y-~~~~~l~~Ida~~~~eeV~~~i~~~ 156 (520)
...||++|+|+||.+++.+|+ .|+....+.......+|+..++..+. ..|| ...+.++.|||++++++|+++|.+.
T Consensus 144 ~~~pD~vi~Ld~~~e~~~~Ri~~R~r~~e~~~~~~~~~rv~~~~~~~~--~~~~~~~~~~~~vId~~~~~eev~~~I~~~ 221 (230)
T 2vp4_A 144 HVQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWL--IHQRRPQSCKVLVLDADLNLENIGTEYQRS 221 (230)
T ss_dssp CCCCSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHH--TSCCSSCCCEEEEEECCC------------
T ss_pred cCCCCEEEEEeCCHHHHHHHHHHcCCcccccCcHHHHHHHHHHHHHHH--HHhcccCCCCEEEEECCCCHHHHHHHHHHH
Confidence 457999999999999999998 45321111111246677777766642 1222 4455689999999999999999999
Q ss_pred HHHHh
Q psy11031 157 VLKIL 161 (520)
Q Consensus 157 l~~~~ 161 (520)
+..++
T Consensus 222 l~~~~ 226 (230)
T 2vp4_A 222 ESSIF 226 (230)
T ss_dssp -----
T ss_pred HHHHh
Confidence 88755
No 161
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.04 E-value=0.00033 Score=71.74 Aligned_cols=37 Identities=16% Similarity=0.333 Sum_probs=33.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhH
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKL 260 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdL 260 (520)
.+++.|+|+||+||||||+|..|++++ +...||++.+
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l-~~eiIs~Ds~ 74 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHF-PLEVINSDKM 74 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTS-CEEEEECCSS
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHC-CCcEEccccc
Confidence 456799999999999999999999998 9999998866
No 162
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.03 E-value=0.00018 Score=72.13 Aligned_cols=38 Identities=18% Similarity=0.196 Sum_probs=31.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCC-----CeeeehhhHHh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPN-----WTQISLGKLLR 262 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g-----~~~is~gdLlr 262 (520)
++.+|.|.|++||||||+|+.|++.+ | +.+|+++++.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l-g~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF-RREGVKAVSIEGDAFHR 46 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH-HHHTCCEEEEEGGGGBS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH-hhcCCCeeEeecchhhc
Confidence 46789999999999999999999986 7 78999998886
No 163
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=96.95 E-value=0.008 Score=56.45 Aligned_cols=135 Identities=11% Similarity=0.085 Sum_probs=80.0
Q ss_pred cccCcccCcHHHHHHHHHHccCCCCCCCCHHHHHHH----------HHHHHhcCCCCCcEEEeCCC----------CCHH
Q psy11031 11 LLDFPSHRNPLKMFNLFVSEEVKDFSFLSSKTVTEV----------LMLEMKMSPAAKAFLISGYP----------RNMR 70 (520)
Q Consensus 11 ~~~~~~h~s~G~~l~~~i~~G~~~g~lVPdelv~~l----------l~~~l~~~~~~~G~ILDGFP----------Rt~~ 70 (520)
+...|..+..|..++.++..+. .-|.....-. |...+. ..+-+|.|-|- +...
T Consensus 33 ~treP~~t~~~~~ir~~l~~~~----~~~~~~~ll~~a~r~~~~~~I~~~L~---~g~~Vi~DRy~~S~~ayq~~~~~~~ 105 (197)
T 3hjn_A 33 LKREPGGTETGEKIRKILLEEE----VTPKAELFLFLASRNLLVTEIKQYLS---EGYAVLLDRYTDSSVAYQGFGRNLG 105 (197)
T ss_dssp EEESSCSSHHHHHHHHHHHHSC----CCHHHHHHHHHHHHHHHHHHHHHHHT---TTCEEEEESCHHHHHHHHTTTTCSC
T ss_pred EEECCCCCcHHHHHHHHhhccc----CChHHHHHHHHHHHHHHHHHHHHHHH---CCCeEEecccchHHHHHHHhccCCC
Confidence 3456778899999999988776 5554332211 122221 22335667553 2211
Q ss_pred -----hHHHHHHhcCCcCEEEEEEcCHHHHHHHhhhCccCCccchHHHHHHH-HHHHhccchHHHHhhhCCcEEEEeCCC
Q psy11031 71 -----DVVEYSDKIKTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMEL-ANFYQNVTPVTDFFDQRGMLIAVNGER 144 (520)
Q Consensus 71 -----QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl~rg~~~~r~d~e~i~~Rl-~~Y~~~t~pvi~~Y~~~~~l~~Ida~~ 144 (520)
+...+...+..||++|+|++|-++..+|.... .|.+.....+|. +.|.+ +.+.|.+ .++.|||++
T Consensus 106 ~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~---dr~e~~ef~~rv~~~y~~----la~~~~~--~~~~IDa~~ 176 (197)
T 3hjn_A 106 KEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGEL---NRFEKREFLERVREGYLV----LAREHPE--RIVVLDGKR 176 (197)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC------CTTCCHHHHHHHHHHHHH----HHHHCTT--TEEEEETTS
T ss_pred HHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCc---CccccHHHHHHHHHHHHH----HHHhCCC--CEEEEcCCC
Confidence 11112223458999999999999998886321 232222233343 33332 3344444 389999999
Q ss_pred ChHHHHHHHHHHHHHHh
Q psy11031 145 NPVEVYADFRTAVLKIL 161 (520)
Q Consensus 145 ~~eeV~~~i~~~l~~~~ 161 (520)
++++|.++|.+.|+..+
T Consensus 177 ~~eeV~~~I~~~i~~rl 193 (197)
T 3hjn_A 177 SIEEIHRDVVREVKRRW 193 (197)
T ss_dssp CHHHHHHHHHHHHSCC-
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999987654
No 164
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.94 E-value=0.00052 Score=69.50 Aligned_cols=37 Identities=16% Similarity=0.271 Sum_probs=33.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhH
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKL 260 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdL 260 (520)
..|+.|+|.||+||||||+|..|++++ +...||++.+
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~-~~~iis~Ds~ 44 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKIL-PVELISVDSA 44 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHS-CEEEEECCTT
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhC-CCcEEecccc
Confidence 457889999999999999999999998 9999998753
No 165
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.93 E-value=0.0078 Score=55.97 Aligned_cols=97 Identities=12% Similarity=0.087 Sum_probs=69.5
Q ss_pred CCCcEEEe---CCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHhh-hCc---cCCccchHHHHHHHHHHHhccchHH
Q psy11031 56 AAKAFLIS---GYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQID-YGA---KLGHVILSLARMELANFYQNVTPVT 128 (520)
Q Consensus 56 ~~~G~ILD---GFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl~-rg~---~~~r~d~e~i~~Rl~~Y~~~t~pvi 128 (520)
...++||+ |.+...+....+.. ++.||+|+||.+++.+|+. +.. .....+.+.+..++..+.+...|
T Consensus 93 ~~~~~vi~~ggg~~~~~~~~~~l~~----~~~vi~L~~~~e~l~~Rl~~~~~~Rp~~~~~~~~~~~~~i~~~~~~r~~-- 166 (199)
T 3vaa_A 93 EFENVVISTGGGAPCFYDNMEFMNR----TGKTVFLNVHPDVLFRRLRIAKQQRPILQGKEDDELMDFIIQALEKRAP-- 166 (199)
T ss_dssp TCSSEEEECCTTGGGSTTHHHHHHH----HSEEEEEECCHHHHHHHHHHTGGGCGGGTTCCHHHHHHHHHHHHHHHHH--
T ss_pred hcCCcEEECCCcEEccHHHHHHHHc----CCEEEEEECCHHHHHHHHhcCCCCCCCcCCCChhhHHHHHHHHHHHHHH--
Confidence 35789999 88887777644433 6899999999999999996 221 11122355566777776665554
Q ss_pred HHhhhCCcEEEEeCCC-ChHHHHHHHHHHHHHHh
Q psy11031 129 DFFDQRGMLIAVNGER-NPVEVYADFRTAVLKIL 161 (520)
Q Consensus 129 ~~Y~~~~~l~~Ida~~-~~eeV~~~i~~~l~~~~ 161 (520)
+|... -+.||.+. +++++.++|.+.+...+
T Consensus 167 -~y~~a--d~~Idt~~~s~ee~~~~I~~~l~~~l 197 (199)
T 3vaa_A 167 -FYTQA--QYIFNADELEDRWQIESSVQRLQELL 197 (199)
T ss_dssp -HHTTS--SEEEECCCCSSHHHHHHHHHHHHHHT
T ss_pred -HHhhC--CEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 56553 46788876 99999999999998765
No 166
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=96.93 E-value=0.0025 Score=68.61 Aligned_cols=158 Identities=13% Similarity=0.087 Sum_probs=87.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCC--CCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHH
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYP--NWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAE 300 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~--g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~ 300 (520)
..+..|+|.|..||||+|++++|.+.+. |+..++++. ++..+.+ +.+ +..+
T Consensus 41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~---------Pt~~E~~---~~y---------------l~R~ 93 (500)
T 3czp_A 41 RFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLR---------PSDEELE---RPP---------------QWRF 93 (500)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSS---------CCHHHHT---SCT---------------THHH
T ss_pred CCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCC---------CChhhcc---CCh---------------hhhH
Confidence 5688999999999999999999999861 222233211 0111111 011 1112
Q ss_pred HhccccCCCcEEEEeCC--------------C-----CCHHHHHHHHhhcCC---CCCEEEecCChhhhhc---cCCCCC
Q psy11031 301 MKKTKYTEADGIVIDGF--------------P-----REMSQLIDFENKYQI---HPPMILIDCSKLVLHK---GQIDNS 355 (520)
Q Consensus 301 l~~~~~~~~~G~ILDGF--------------P-----rt~~Qae~l~~~~~~---p~~VI~Ld~~~~~~~r---~R~dD~ 355 (520)
.. +.+..+.-+|.|++ + +-++++..||..+.. +...|||+++.+...+ .|.+|-
T Consensus 94 ~~-~lP~~G~IvIfdRSwYs~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~kRl~~R~~~p 172 (500)
T 3czp_A 94 WR-RLPPKGRTGIFFGNWYSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKERLKALEKDP 172 (500)
T ss_dssp HH-HCCCTTCEEEEESCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHCC-------
T ss_pred HH-hCCCCCeEEEEeCchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHHHHHHHHhcCC
Confidence 22 12223444555543 1 125677777776543 3457999999975432 222211
Q ss_pred HH---------HHHHHHHHHHHHhHHHHHHhhhC-CCEEEEECCCC---HHHHHHHHHHHHHHHHH
Q psy11031 356 VS---------AFRRRLELFRERTLPMLRAMDVE-TRLTIVDGDTQ---LPQVREEFERVLKKIID 408 (520)
Q Consensus 356 ~e---------~~~~Rl~~f~~~~~~l~~~y~~~-~~l~~IDa~~~---~e~V~~~I~~~I~~~i~ 408 (520)
.. .-..++..|.+....++..-+.. ..+++|+|+.. ...|.+.|.+.|...+.
T Consensus 173 ~k~Wk~s~~D~~~~~~~~~Y~~a~e~~l~~T~t~~APW~vI~a~dk~~arl~v~~~il~~l~~~l~ 238 (500)
T 3czp_A 173 QHSWKLSPLDWKQSEVYDRFVHYGERVLRRTSRDYAPWYVVEGADERYRALTVGRILLEGLQAALA 238 (500)
T ss_dssp ------CSSCTTSHHHHHHHHHHHHHHHHHHCBTTBCEEEEECSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCEEEEECCCcchhHHHHHHHHHHHHHHHHH
Confidence 00 11245677777766666544322 36999999984 45666777777766664
No 167
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.89 E-value=0.00049 Score=70.57 Aligned_cols=35 Identities=29% Similarity=0.468 Sum_probs=32.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhH
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKL 260 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdL 260 (520)
+++|+|.||+||||||+|..|++.+ +...||++++
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l-~~~iis~Ds~ 41 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKF-NGEIISGDSM 41 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT-TEEEEECCSS
T ss_pred CceEEEECCCcCcHHHHHHHHHHHc-CCceeccccc
Confidence 3689999999999999999999997 9999999877
No 168
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.85 E-value=0.00069 Score=68.73 Aligned_cols=35 Identities=20% Similarity=0.171 Sum_probs=32.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhH
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKL 260 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdL 260 (520)
++.|+|.||+||||||+|..|++++ +...||++.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~-~~~iis~Ds~ 37 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL-NGEVISGDSM 37 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT-TEEEEECCGG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC-ccceeecCcc
Confidence 5789999999999999999999998 9999999865
No 169
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=96.84 E-value=0.015 Score=58.18 Aligned_cols=155 Identities=14% Similarity=0.253 Sum_probs=85.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCc---------chHHHHhhhhcCCcc-----
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEG---------LNSRIKSSVSAGDFV----- 288 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~---------~g~~i~~~l~~G~~v----- 288 (520)
..+..|+|+|| ||+|++++|.+.++.-..+++....| .- ..+.. .-+.+...+.+|..+
T Consensus 103 ~~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR---~~-R~gE~~G~dY~Fv~s~eef~~~i~~g~flE~~~~ 175 (295)
T 1kjw_A 103 HYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTR---PK-REYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQY 175 (295)
T ss_dssp CSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECS---CC-CTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCEEEEECC---CHHHHHHHHHhhCccceeeeeeeccc---CC-CCccccCceeEecCCHHHHHHHHHCCCcEEEEEE
Confidence 34566888887 79999999999874334455544444 11 11111 223455555666544
Q ss_pred -------chHHHHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCCh-hhhh--ccCCCCCHHH
Q psy11031 289 -------NRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSK-LVLH--KGQIDNSVSA 358 (520)
Q Consensus 289 -------Pd~lv~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~-~~~~--r~R~dD~~e~ 358 (520)
|.+.+.++ +. .++.+|||.=+..+.++ ..... .+.+|||..+. +.+. ++|. +++.
T Consensus 176 ~g~~YGt~~~~V~~~----~~-----~G~~vildid~~g~~~l---~~~~~-~pi~IfI~pps~~~L~~L~~R~--t~~~ 240 (295)
T 1kjw_A 176 NSHLYGTSVQSVREV----AE-----QGKHCILDVSANAVRRL---QAAHL-HPIAIFIRPRSLENVLEINKRI--TEEQ 240 (295)
T ss_dssp TTEEEEEEHHHHHHH----HH-----TTCEEEECCCTTHHHHH---HHTTC-CCEEEEECCSSHHHHHHHCTTS--CHHH
T ss_pred cCcEeeeeHHHHHHH----Hh-----cCCeEEEEeCHHHHHHH---Hhccc-CCeEEEEECCCHHHHHHHHhcC--CHHH
Confidence 33333333 34 46789999765544433 33222 34788888763 3322 2343 4567
Q ss_pred HHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031 359 FRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK 405 (520)
Q Consensus 359 ~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~ 405 (520)
+++|++...+.-......|+ .+ |+.+ +.++.++++.+.|..
T Consensus 241 i~~rl~~a~~~e~~~~~~fd----~v-ivNd-~le~a~~~l~~ii~~ 281 (295)
T 1kjw_A 241 ARKAFDRATKLEQEFTECFS----AI-VEGD-SFEEIYHKVKRVIED 281 (295)
T ss_dssp HHHHHHHHHHHHHHHGGGCS----EE-ECCS-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCe----EE-EECc-CHHHHHHHHHHHHHh
Confidence 88888876432111112222 33 4444 788888888777753
No 170
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.73 E-value=0.0028 Score=62.79 Aligned_cols=131 Identities=7% Similarity=-0.011 Sum_probs=80.4
Q ss_pred cCcccCcHHHHHHHHHHccCCCC---CC------CCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHH---hcC
Q psy11031 13 DFPSHRNPLKMFNLFVSEEVKDF---SF------LSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSD---KIK 80 (520)
Q Consensus 13 ~~~~h~s~G~~l~~~i~~G~~~g---~l------VPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~---~~~ 80 (520)
+++ |++.+ .++..+.... .| .. .+.+++.+++...+.......++|+||++.+..+...+.+ ...
T Consensus 28 ~~~-~i~~D-~~r~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~ 104 (301)
T 1ltq_A 28 GFY-NINRD-DYRQSIMAHE-ERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYG 104 (301)
T ss_dssp TEE-EECHH-HHHHHHTTSC-CCC---CCHHHHHHHHHHHHHHHHHHTTSCTTCCEEEECSCCCCHHHHHHHHHHHHHTT
T ss_pred CcE-Eeccc-HHHHHhccCC-cccccccchhhhhHHHHHHHHHHHHHHhhccCCCEEEEeCCCCCHHHHHHHHHHHHHcC
Confidence 455 88888 6666554321 12 12 2233344455555532134678999999999887755543 223
Q ss_pred CcCEEEEEEcCHHHHHHHhh-hCccCCcc-chHHHHHHHHHHHhccchH-HHHhhhCCcEEEEeCCCChHHH
Q psy11031 81 TINGVILIAWRQSLLERQID-YGAKLGHV-ILSLARMELANFYQNVTPV-TDFFDQRGMLIAVNGERNPVEV 149 (520)
Q Consensus 81 ~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~-d~e~i~~Rl~~Y~~~t~pv-i~~Y~~~~~l~~Ida~~~~eeV 149 (520)
.+..+|+|+||.+++.+|+. |+. |. .++.+.+|+..|+...... ..........+.+|.+++.+++
T Consensus 105 ~~~~~i~l~~~~e~~~~R~~~R~~---~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~iD~dgtl~~~ 173 (301)
T 1ltq_A 105 WKVEHKVFDVPWTELVKRNSKRGT---KAVPIDVLRSMYKSMREYLGLPVYNGTPGKPKAVIFDVDGTLAKM 173 (301)
T ss_dssp CEEEEEECCCCHHHHHHHHHHCGG---GCCCHHHHHHHHHHHHHHHTCCCCCCCTTSCEEEEEETBTTTBCC
T ss_pred CcEEEEEEECCHHHHHHHHHhccC---CCCCHHHHHHHHHHHhcccCCcceeccccccceEEEeCCCCcccc
Confidence 45689999999999999994 432 33 4788999999998764432 0001112246668887776554
No 171
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=96.70 E-value=0.00096 Score=65.13 Aligned_cols=36 Identities=14% Similarity=0.313 Sum_probs=33.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHh
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR 262 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr 262 (520)
.+|.|.|++||||||+|+.|.+++ |+.++++|+-++
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~-g~~~~~~~~~~~ 37 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNY-SAVKYQLAGPIK 37 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS-CEEECCTTHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc-CCeEEecChHHH
Confidence 479999999999999999999987 999999998887
No 172
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.67 E-value=0.0031 Score=57.67 Aligned_cols=102 Identities=14% Similarity=-0.006 Sum_probs=60.0
Q ss_pred CCCcEEEeCCCCCHHhHHH---HHHhcCCcCEEEEEEcCHHHHHHHh-hhCccCCcc----chHHHH-HHHHHHHhccch
Q psy11031 56 AAKAFLISGYPRNMRDVVE---YSDKIKTINGVILIAWRQSLLERQI-DYGAKLGHV----ILSLAR-MELANFYQNVTP 126 (520)
Q Consensus 56 ~~~G~ILDGFPRt~~QA~~---~~~~~~~pd~VI~L~~pd~~l~~Rl-~rg~~~~r~----d~e~i~-~Rl~~Y~~~t~p 126 (520)
...++|+||+++...+... +......++++|+|+||.+++.+|+ .|+....|. +.+... .++...++...+
T Consensus 76 ~g~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 155 (193)
T 2rhm_A 76 SGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIAQGARHPGHCDDRSPADLELVRSRGDIPP 155 (193)
T ss_dssp TTCCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHHTTCC--------CHHHHHHHHHSCCCCC
T ss_pred CCCeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcCccccCcccccCccCcchhhHHHHhcCCC
Confidence 3568999999943322222 3344567889999999999999999 454321232 111111 122222222222
Q ss_pred HHHHhhhCCcEEEEeCCCChHHHHHHHHHHHHHHh
Q psy11031 127 VTDFFDQRGMLIAVNGERNPVEVYADFRTAVLKIL 161 (520)
Q Consensus 127 vi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l~~~~ 161 (520)
+|.+ ...+.||++.+.+++.++|.+.|...+
T Consensus 156 ---~~~~-~~~~~Idt~~~~~~~~~~i~~~i~~~l 186 (193)
T 2rhm_A 156 ---LPLG-GPLLTVDTTFPEQIDMNAIVQWVRQHL 186 (193)
T ss_dssp ---CCCC-SCEEEEECSSGGGCCHHHHHHHHHHHH
T ss_pred ---ccCC-CCEEEEeCCCCcccCHHHHHHHHHHHH
Confidence 2321 347899999987777777777776655
No 173
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.58 E-value=0.034 Score=49.46 Aligned_cols=80 Identities=15% Similarity=0.044 Sum_probs=54.7
Q ss_pred HHHHhcCCcCEEEEEEcCHHHHHHHhh-hCccCCccchHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCC-CChHHHHH
Q psy11031 74 EYSDKIKTINGVILIAWRQSLLERQID-YGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGE-RNPVEVYA 151 (520)
Q Consensus 74 ~~~~~~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~-~~~eeV~~ 151 (520)
.+...+..|+.+|+|++|.+++.+|+. |+.. ..+.+...+..+.|.+ ..+.|.. ..+.||++ +++++|.+
T Consensus 87 ~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~r~--~~~~~~~~~~~~~~~~----~~~~~~~--~~~~id~~~~~~~ev~~ 158 (173)
T 3kb2_A 87 FIEDKIKAKAKVVYLHADPSVIKKRLRVRGDE--YIEGKDIDSILELYRE----VMSNAGL--HTYSWDTGQWSSDEIAK 158 (173)
T ss_dssp HHHHHHTTTEEEEEEECCHHHHHHHHHHHSCS--CCCHHHHHHHHHHHHH----HHHTCSS--CEEEEETTTSCHHHHHH
T ss_pred HHhccCCCCCEEEEEeCCHHHHHHHHHhcCCc--chhhhHHHHHHHHHHH----HHhhcCC--CEEEEECCCCCHHHHHH
Confidence 333444579999999999999999994 4311 1122333333344433 4455653 47889999 59999999
Q ss_pred HHHHHHHHHh
Q psy11031 152 DFRTAVLKIL 161 (520)
Q Consensus 152 ~i~~~l~~~~ 161 (520)
+|.+.++...
T Consensus 159 ~I~~~~~~~~ 168 (173)
T 3kb2_A 159 DIIFLVELEH 168 (173)
T ss_dssp HHHHHHHHGG
T ss_pred HHHHHHhCCC
Confidence 9999998755
No 174
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.52 E-value=0.0013 Score=65.67 Aligned_cols=40 Identities=30% Similarity=0.495 Sum_probs=31.8
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCCCC--eeeehhhHHh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNW--TQISLGKLLR 262 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~--~~is~gdLlr 262 (520)
...|..++|.||||+|||++|+.|++.+ |. ..++++++..
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l-~~~~i~v~~~~l~~ 74 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKM-GINPIMMSAGELES 74 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHH-TCCCEEEEHHHHHC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh-CCCEEEEeHHHhhh
Confidence 3456678888999999999999999985 54 5567777765
No 175
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.50 E-value=0.0014 Score=61.18 Aligned_cols=30 Identities=30% Similarity=0.443 Sum_probs=23.2
Q ss_pred EEEEcCCCCChhHHHHHHHhhCCCCeeeeh
Q psy11031 228 VWVVGGPGSSKSEMCQKVLQDYPNWTQISL 257 (520)
Q Consensus 228 I~vlG~PGSGKsT~a~~La~k~~g~~~is~ 257 (520)
|+|+|++||||||+|++|+.+-....|+.+
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~~~~~~yiaT 31 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGDAPQVLYIAT 31 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCSCSSEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHhcCCCeEEEec
Confidence 899999999999999999975112345555
No 176
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.50 E-value=0.0024 Score=59.68 Aligned_cols=93 Identities=5% Similarity=0.029 Sum_probs=60.7
Q ss_pred CCcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHh-hhCccCCccchHHHHHHHH-HHHhccchHHHHhhhC
Q psy11031 57 AKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQI-DYGAKLGHVILSLARMELA-NFYQNVTPVTDFFDQR 134 (520)
Q Consensus 57 ~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl-~rg~~~~r~d~e~i~~Rl~-~Y~~~t~pvi~~Y~~~ 134 (520)
...+|+||++--..+ .+ ...+|.+|+|+|+.++..+|+ .|+.. . +.+..|+. .+........+.|.+.
T Consensus 110 ~~~vi~eg~~~~~~~--~~---~~~~d~~i~l~~~~~~~~~R~~~R~~~--~---e~~~~~~~~~~~~~~~~~~~~~~~~ 179 (207)
T 2qt1_A 110 IPILIIEGFLLFNYK--PL---DTIWNRSYFLTIPYEECKRRRSTRVYQ--P---PDSPGYFDGHVWPMYLKYRQEMQDI 179 (207)
T ss_dssp CCEEEEECTTCTTCG--GG---TTTCSEEEEEECCHHHHHHHHHHSCCS--S---CCCTTHHHHTHHHHHHHHHHHGGGC
T ss_pred CCEEEEeehHHcCcH--HH---HHhcCeeEEEECCHHHHHHHHHHcCCC--c---cchHHHHHHHHhHHHHHHHHHHHhc
Confidence 467999997643211 11 246799999999999988888 45421 1 11122332 2222223455666654
Q ss_pred -CcEEEEeCCCChHHHHHHHHHHHHH
Q psy11031 135 -GMLIAVNGERNPVEVYADFRTAVLK 159 (520)
Q Consensus 135 -~~l~~Ida~~~~eeV~~~i~~~l~~ 159 (520)
..++.||+++++++++++|.+.+..
T Consensus 180 ~~~v~~Id~~~~~eev~~~I~~~l~~ 205 (207)
T 2qt1_A 180 TWEVVYLDGTKSEEDLFLQVYEDLIQ 205 (207)
T ss_dssp SSCCEEEETTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEecCCCCHHHHHHHHHHHHHh
Confidence 5678899999999999999988864
No 177
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.41 E-value=0.0016 Score=61.33 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=29.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCC----CCeeeehhhH
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYP----NWTQISLGKL 260 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~----g~~~is~gdL 260 (520)
..+.+|.|+|++||||||+++.|+..+. ...+++.+..
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~ 61 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence 3467899999999999999999998762 1566666543
No 178
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.35 E-value=0.0052 Score=58.98 Aligned_cols=80 Identities=9% Similarity=0.076 Sum_probs=53.1
Q ss_pred CcCEEEEEEcCHHHHHHHh-hhCccCCccc----hHHHHHHHHHHHh-ccchH-HHHhhhCCcEEEEeCCCChHHHHHHH
Q psy11031 81 TINGVILIAWRQSLLERQI-DYGAKLGHVI----LSLARMELANFYQ-NVTPV-TDFFDQRGMLIAVNGERNPVEVYADF 153 (520)
Q Consensus 81 ~pd~VI~L~~pd~~l~~Rl-~rg~~~~r~d----~e~i~~Rl~~Y~~-~t~pv-i~~Y~~~~~l~~Ida~~~~eeV~~~i 153 (520)
.||.+|+|++|.+++.+|+ .|+....+.. .+.+...+..|.+ .+.|+ +++| ..+.++.|||++++++|++++
T Consensus 149 ~pd~~i~l~~~~~~~~~R~~~R~r~~e~~~~~~~~~~v~~~y~~~~~~~~~p~~~~~~-~~~~~~~Id~~~~~~~v~~~i 227 (241)
T 2ocp_A 149 TLHGFIYLQASPQVCLKRLYQRAREEEKGIELAYLEQLHGQHEAWLIHKTTKLHFEAL-MNIPVLVLDVNDDFSEEVTKQ 227 (241)
T ss_dssp CCCEEEEEECCHHHHHHHHHHSCCTTTTTCCHHHHHHHHHHHHHHHTSCCSCCCCTTG-GGCCEEEEECCSCTTTCHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHhcCCcccccCCHHHHHHHHHHHHHHHhhcccccccccc-CCCCEEEEECCCChhhCHHHH
Confidence 7999999999999999998 4543211211 2222333333333 35665 3445 345689999999999999888
Q ss_pred HHHHHHHh
Q psy11031 154 RTAVLKIL 161 (520)
Q Consensus 154 ~~~l~~~~ 161 (520)
..+++.+.
T Consensus 228 ~~i~~~i~ 235 (241)
T 2ocp_A 228 EDLMREVN 235 (241)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777543
No 179
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.31 E-value=0.017 Score=56.33 Aligned_cols=94 Identities=10% Similarity=0.056 Sum_probs=63.0
Q ss_pred CcEEEeCCCCCHHhHHHHHH---hcCCcCEEEEEEcCHHHHHHHhh-hCccCCccchHHHHHHHHHHHhccchHHHHhhh
Q psy11031 58 KAFLISGYPRNMRDVVEYSD---KIKTINGVILIAWRQSLLERQID-YGAKLGHVILSLARMELANFYQNVTPVTDFFDQ 133 (520)
Q Consensus 58 ~G~ILDGFPRt~~QA~~~~~---~~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~ 133 (520)
.++|+||.+....+...+.. ....++++|+|+||.+++.+|+. |+.. ...+.+.+....|. .|. ..|..
T Consensus 73 ~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~~~---~~~~~l~~~~~~~e---~~~-~~~~~ 145 (260)
T 3a4m_A 73 YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGEK---IPNEVIKKMYEKFD---EPG-KKYKW 145 (260)
T ss_dssp SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTTCS---SCHHHHHHHHHHCC---CTT-SSCGG
T ss_pred CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCCCC---CCHHHHHHHHHHhc---Ccc-ccCCC
Confidence 78999998877666544432 34568999999999999999994 5311 13455555444443 222 23432
Q ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHH
Q psy11031 134 RGMLIAVNGER--NPVEVYADFRTAVL 158 (520)
Q Consensus 134 ~~~l~~Ida~~--~~eeV~~~i~~~l~ 158 (520)
....++||++. ++++|++.|.+.+.
T Consensus 146 ~~~~~~Id~~~~~~~~ei~~~I~~~l~ 172 (260)
T 3a4m_A 146 DEPFLIIDTTKDIDFNEIAKKLIEKSK 172 (260)
T ss_dssp GCCSEEEETTSCCCHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHhccc
Confidence 23467899997 88999888877663
No 180
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.25 E-value=0.0019 Score=67.55 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=31.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGK 259 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gd 259 (520)
+++|+|.||+||||||+|..|++++ +...||++.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~-~~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF-NGEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH-TEEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC-CCeEeecCc
Confidence 4679999999999999999999998 888999876
No 181
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.25 E-value=0.0023 Score=67.63 Aligned_cols=40 Identities=20% Similarity=0.298 Sum_probs=32.2
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeee--ehhhHHh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI--SLGKLLR 262 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i--s~gdLlr 262 (520)
.+.|+-|++.||||+|||++|+.||... |+..+ +..+++.
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e~-~~~f~~v~~s~l~~ 253 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQT-NATFLKLAAPQLVQ 253 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHH-TCEEEEEEGGGGCS
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHHh-CCCEEEEehhhhhh
Confidence 3457789999999999999999999986 77655 5555554
No 182
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.23 E-value=0.0037 Score=59.86 Aligned_cols=142 Identities=12% Similarity=0.147 Sum_probs=84.6
Q ss_pred cccCc-ccCcHHHHHHHHHHccCCCCCCCCHHHHHHH------------HHHHHhcCCCCCcEEEeCCCCC---------
Q psy11031 11 LLDFP-SHRNPLKMFNLFVSEEVKDFSFLSSKTVTEV------------LMLEMKMSPAAKAFLISGYPRN--------- 68 (520)
Q Consensus 11 ~~~~~-~h~s~G~~l~~~i~~G~~~g~lVPdelv~~l------------l~~~l~~~~~~~G~ILDGFPRt--------- 68 (520)
++..| ..+.+|..+++++..+. +. +.+. ...+ |...|. ..+-+|.|=|--+
T Consensus 35 ~~~ep~~~t~~g~~ir~~l~~~~--~~-~~~~-~~~llf~a~R~~~~~~I~paL~---~g~~VI~DRy~~S~~ayq~~~~ 107 (216)
T 3tmk_A 35 LLKFPERSTRIGGLINEYLTDDS--FQ-LSDQ-AIHLLFSANRWEIVDKIKKDLL---EGKNIVMDRYVYSGVAYSAAKG 107 (216)
T ss_dssp EEESSCTTSHHHHHHHHHHHCTT--SC-CCHH-HHHHHHHHHHHTTHHHHHHHHH---TTCEEEEESCHHHHHHHHHTTC
T ss_pred EEEecCCCChHHHHHHHHHHhcc--cC-CCHH-HHHHHHHHHHHHHHHHHHHHHH---cCCEEEEeccHhHHHHHHHhcC
Confidence 34456 47889999999998754 11 2222 1222 222222 1234555765422
Q ss_pred -----HHhHHHHHHhcCCcCEEEEE-EcCHHHHHHHhhhCccCCccchHHHHHHHHHHHhccchH-HHHhhhCCcEEEEe
Q psy11031 69 -----MRDVVEYSDKIKTINGVILI-AWRQSLLERQIDYGAKLGHVILSLARMELANFYQNVTPV-TDFFDQRGMLIAVN 141 (520)
Q Consensus 69 -----~~QA~~~~~~~~~pd~VI~L-~~pd~~l~~Rl~rg~~~~r~d~e~i~~Rl~~Y~~~t~pv-i~~Y~~~~~l~~Id 141 (520)
++....+...+..||++|+| ++|.+++.+|+.++. .|.+.....+|+...+.....- .+++ ...++.||
T Consensus 108 l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~~--dr~E~~~f~~rvr~~Y~~la~~~~~~~--~~~~~vID 183 (216)
T 3tmk_A 108 TNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGD--ERYETVKFQEKVKQTFMKLLDKEIRKG--DESITIVD 183 (216)
T ss_dssp CTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSSC--CTTCCHHHHHHHHHHHHHHHHHHHHTT--CCSEEEEE
T ss_pred CCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccCc--ccccHHHHHHHHHHHHHHHHHhccccC--CCCEEEEe
Confidence 22222222234589999999 999999988884321 2333334555655544443321 2212 24599999
Q ss_pred -CCCChHHHHHHHHHHHHHHhcc
Q psy11031 142 -GERNPVEVYADFRTAVLKILNK 163 (520)
Q Consensus 142 -a~~~~eeV~~~i~~~l~~~~~~ 163 (520)
|++++++|+++|.+.|...+..
T Consensus 184 ~a~~s~eeV~~~I~~~i~~~l~~ 206 (216)
T 3tmk_A 184 VTNKGIQEVEALIWQIVEPVLST 206 (216)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999988844
No 183
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.22 E-value=0.0025 Score=61.55 Aligned_cols=31 Identities=29% Similarity=0.558 Sum_probs=26.3
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCe
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWT 253 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~ 253 (520)
...+.+|.|.||.||||||+++.|+..+ |..
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~~l-G~~ 52 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIMELL-GQN 52 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHHHH-TGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHh-chh
Confidence 3456789999999999999999999876 755
No 184
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.17 E-value=0.0027 Score=67.20 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=31.9
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeee--ehhhHHh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI--SLGKLLR 262 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i--s~gdLlr 262 (520)
...|+-|++.||||+|||++|+.||..+ |+..+ +.++++.
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~-~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATI-GANFIFSPASGIVD 253 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHH-TCEEEEEEGGGTCC
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh-CCCEEEEehhhhcc
Confidence 3456789999999999999999999986 77665 4445544
No 185
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.14 E-value=0.003 Score=60.74 Aligned_cols=36 Identities=17% Similarity=0.304 Sum_probs=28.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeee--ehhhH
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI--SLGKL 260 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i--s~gdL 260 (520)
.+.-|+|.|+||+|||++|+.|++.+ +...+ ++.++
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~-~~~~~~~~~~~~ 75 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA-QVPFLAMAGAEF 75 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH-TCCEEEEETTTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh-CCCEEEechHHH
Confidence 35669999999999999999999986 65544 44443
No 186
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.11 E-value=0.0031 Score=66.64 Aligned_cols=40 Identities=20% Similarity=0.304 Sum_probs=31.4
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeee--ehhhHHh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI--SLGKLLR 262 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i--s~gdLlr 262 (520)
...|+-|++.||||+|||++|+.||..+ |+..+ +..+++.
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~-~~~~~~v~~~~l~~ 244 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANST-KAAFIRVNGSEFVH 244 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHH-TCEEEEEEGGGTCC
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHh-CCCeEEEecchhhc
Confidence 3456679999999999999999999986 77665 4445544
No 187
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.09 E-value=0.0027 Score=66.42 Aligned_cols=40 Identities=25% Similarity=0.340 Sum_probs=31.7
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeee--ehhhHHh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI--SLGKLLR 262 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i--s~gdLlr 262 (520)
...|+-|++.||||+|||++|+.||... |+..+ +..+++.
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~-~~~f~~v~~s~l~s 220 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHT-DCKFIRVSGAELVQ 220 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHH-TCEEEEEEGGGGSC
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhh-CCCceEEEhHHhhc
Confidence 3456779999999999999999999986 77665 4445554
No 188
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.08 E-value=0.0041 Score=62.06 Aligned_cols=38 Identities=21% Similarity=0.262 Sum_probs=30.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeee--ehhhHHh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI--SLGKLLR 262 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i--s~gdLlr 262 (520)
.+..|+|.||||+|||++|+.|+... +...+ +..+++.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~-~~~~i~v~~~~l~~ 87 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANEC-QANFISIKGPELLT 87 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHT-TCEEEEECHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHh-CCCEEEEEhHHHHh
Confidence 45679999999999999999999986 66554 4446554
No 189
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.06 E-value=0.0033 Score=60.77 Aligned_cols=36 Identities=25% Similarity=0.404 Sum_probs=27.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCe--eeehhhHH
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWT--QISLGKLL 261 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~--~is~gdLl 261 (520)
+.-++|.|+||+||||+|+.|+..+ +.. .++..++.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~-~~~~~~i~~~~~~ 82 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA-KVPFFTISGSDFV 82 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH-TCCEEEECSCSST
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc-CCCEEEEeHHHHH
Confidence 4559999999999999999999886 644 44444443
No 190
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.06 E-value=0.0043 Score=60.68 Aligned_cols=32 Identities=28% Similarity=0.415 Sum_probs=27.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeee
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQIS 256 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is 256 (520)
.+.-++|.|+||+|||++|+.|++.+ +...+.
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~-~~~~~~ 81 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATET-NATFIR 81 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHT-TCEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh-CCCEEE
Confidence 45669999999999999999999987 776554
No 191
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.04 E-value=0.0044 Score=61.07 Aligned_cols=38 Identities=24% Similarity=0.304 Sum_probs=29.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCee--eehhhHHh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQ--ISLGKLLR 262 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~--is~gdLlr 262 (520)
.+..++|.||||+||||+|+.|++.+ +... +++.++..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~-~~~~~~i~~~~l~~ 92 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC-SATFLNISAASLTS 92 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT-TCEEEEEESTTTSS
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh-CCCeEEeeHHHHhh
Confidence 35679999999999999999999987 7544 45545543
No 192
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.01 E-value=0.0033 Score=57.37 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=27.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCC---C--CeeeehhhHHh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYP---N--WTQISLGKLLR 262 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~---g--~~~is~gdLlr 262 (520)
+..++|+|||||||||+++.|+..+. | ..+++..+++.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~ 80 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIF 80 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence 56799999999999999999876531 2 34455555554
No 193
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.99 E-value=0.013 Score=55.96 Aligned_cols=97 Identities=11% Similarity=0.070 Sum_probs=61.0
Q ss_pred CCCcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHh-hhCccCCc-cchHHHHHHHH--HHHhccchHHHHh
Q psy11031 56 AAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQI-DYGAKLGH-VILSLARMELA--NFYQNVTPVTDFF 131 (520)
Q Consensus 56 ~~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl-~rg~~~~r-~d~e~i~~Rl~--~Y~~~t~pvi~~Y 131 (520)
...|+|+||+++.. + ++ ...+.+|+|+||.+++.+|+ .+...-++ .+.+.+.+++. .+......+..+|
T Consensus 134 ~~~~~v~~g~~~~~--~--~l---~~~d~vi~L~a~~e~~~~R~~~~~~~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~ 206 (236)
T 1q3t_A 134 QQGGIVMDGRDIGT--V--VL---PQAELKIFLVASVDERAERRYKENIAKGIETDLETLKKEIAARDYKDSHRETSPLK 206 (236)
T ss_dssp TTSCEEEECSSCSS--S--SG---GGCSEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTCSSSCCS
T ss_pred ccCCEEEECCcchh--h--hc---cCCCEEEEEECCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhccccccc
Confidence 35689999998741 1 11 24589999999999988886 22111121 13344444444 3444444444455
Q ss_pred hhCCcEEEEeCC-CChHHHHHHHHHHHHHH
Q psy11031 132 DQRGMLIAVNGE-RNPVEVYADFRTAVLKI 160 (520)
Q Consensus 132 ~~~~~l~~Ida~-~~~eeV~~~i~~~l~~~ 160 (520)
.... .+.||++ .+++++.++|.+.+...
T Consensus 207 ~~~d-~~vId~~~~s~eev~~~I~~~l~~~ 235 (236)
T 1q3t_A 207 QAED-AVYLDTTGLNIQEVVEKIKAEAEKR 235 (236)
T ss_dssp CCTT-CEEEECSSCCHHHHHHHHHHHHHHH
T ss_pred ccCC-EEEEcCCCCCHHHHHHHHHHHHHhh
Confidence 4422 4678988 59999999999988653
No 194
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.95 E-value=0.0039 Score=62.33 Aligned_cols=40 Identities=20% Similarity=0.289 Sum_probs=32.0
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCCC-------Ceee-ehhhHHh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPN-------WTQI-SLGKLLR 262 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g-------~~~i-s~gdLlr 262 (520)
...+.+|.|.|++||||||+|+.|++.+ + ...+ +.++.+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l-~~~g~~~~~~~iv~~D~f~~ 75 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHL-MEKYGGEKSIGYASIDDFYL 75 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHH-HHHHGGGSCEEEEEGGGGBC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh-hhcCCCCceEEEeccccccC
Confidence 3457899999999999999999999876 3 3455 7777665
No 195
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.93 E-value=0.0024 Score=65.83 Aligned_cols=29 Identities=34% Similarity=0.451 Sum_probs=25.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCee
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQ 254 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~ 254 (520)
.+.|+|+|+|||||||+++.|++.+ ++.+
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~~l-~~~f 52 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQII-NEKY 52 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH-HHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHHHh-CCCe
Confidence 4579999999999999999999986 7776
No 196
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.91 E-value=0.0052 Score=62.43 Aligned_cols=40 Identities=18% Similarity=0.229 Sum_probs=30.9
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCC------CCeeeehhhHH
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYP------NWTQISLGKLL 261 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~------g~~~is~gdLl 261 (520)
...|.+|.|.|++||||||+|+.|+..+. ....++++...
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~ 134 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL 134 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence 34578999999999999999999987641 24557776654
No 197
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.87 E-value=0.011 Score=57.20 Aligned_cols=96 Identities=10% Similarity=0.006 Sum_probs=58.5
Q ss_pred CCcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHh-hhCc-cCCccchHHHHHHHHH-----HHhccchHHH
Q psy11031 57 AKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQI-DYGA-KLGHVILSLARMELAN-----FYQNVTPVTD 129 (520)
Q Consensus 57 ~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl-~rg~-~~~r~d~e~i~~Rl~~-----Y~~~t~pvi~ 129 (520)
...+|+||++--.+. .+.+ .+|.+|+|+||.+++.+|+ .|.. ..++ +.+.+.+|+.. |.+.+.|.
T Consensus 131 ~~~vIveG~~~~~~~--~~~~---~~d~vi~l~~~~e~~~~R~~~R~~~~rg~-~~e~i~~~~~~~~~~~~~~~i~~~-- 202 (252)
T 1uj2_A 131 ADVVLFEGILAFYSQ--EVRD---LFQMKLFVDTDADTRLSRRVLRDISERGR-DLEQILSQYITFVKPAFEEFCLPT-- 202 (252)
T ss_dssp CSEEEEECTTTTSSH--HHHH---HCSEEEEEECCHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHTHHHHHHHHTGGG--
T ss_pred CcEEEEeeeccccCH--HHHH---hcCeeEEEeCCHHHHHHHHHHHHHhhhCC-CHHHHHHHHHHhccHHHHHHhhhh--
Confidence 468999997753221 1222 2589999999999999888 3421 1122 34555555543 33333332
Q ss_pred HhhhCCcEE--EEeCCCChHHHHHHHHHHHHHHh
Q psy11031 130 FFDQRGMLI--AVNGERNPVEVYADFRTAVLKIL 161 (520)
Q Consensus 130 ~Y~~~~~l~--~Ida~~~~eeV~~~i~~~l~~~~ 161 (520)
+.....++ .||++.++++++++|.+.+...+
T Consensus 203 -~~~ad~vI~~~id~~~s~e~v~~~I~~~l~~~~ 235 (252)
T 1uj2_A 203 -KKYADVIIPRGADNLVAINLIVQHIQDILNGGP 235 (252)
T ss_dssp -GGGCSEEEETGGGCHHHHHHHHHHHHHHHHC--
T ss_pred -hhcCcEEEecCCCChhHHHHHHHHHHHHHccch
Confidence 22233343 35888999999999999887544
No 198
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.86 E-value=0.004 Score=58.19 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
..+.+|.|+|++||||||+++.|+..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999874
No 199
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.86 E-value=0.0059 Score=54.74 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
+..++|.|+||+|||++++.+++.+
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999998863
No 200
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.85 E-value=0.0093 Score=55.99 Aligned_cols=70 Identities=7% Similarity=0.000 Sum_probs=49.4
Q ss_pred CcCEEEEEEcCHHHHHHHhhhCccCCccchHHHHHHHHHHHhccchHHHHhhhC-CcEEEEeCCC-ChHHHHHHHHHHHH
Q psy11031 81 TINGVILIAWRQSLLERQIDYGAKLGHVILSLARMELANFYQNVTPVTDFFDQR-GMLIAVNGER-NPVEVYADFRTAVL 158 (520)
Q Consensus 81 ~pd~VI~L~~pd~~l~~Rl~rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~-~~l~~Ida~~-~~eeV~~~i~~~l~ 158 (520)
.|+++|+|+||.+++.+|+.+. ...+.-..|......+..+|... .-.+.||++. +++++.++|.+.+.
T Consensus 131 ~p~~vi~Ld~~~e~~~~R~~r~---------~~~~~r~~~~~~~~~~~~~y~~~~~~~~~IDt~~~s~eev~~~I~~~l~ 201 (211)
T 1m7g_A 131 LPFVEVYVDVPVEVAEQRDPKG---------LYKKAREGVIKEFTGISAPYEAPANPEVHVKNYELPVQDAVKQIIDYLD 201 (211)
T ss_dssp CCEEEEEEECCHHHHHTSCTTC---------HHHHHHHTSSSSCBTTTBCCCCCSSCSEEEECSSSCHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCHHHHHHhhhHH---------HHHHHHhcchhhhhhhhhhccCCCCCeEEEECCCCCHHHHHHHHHHHHH
Confidence 6799999999999999996321 11122234444455555667532 2247899998 99999999999987
Q ss_pred H
Q psy11031 159 K 159 (520)
Q Consensus 159 ~ 159 (520)
.
T Consensus 202 ~ 202 (211)
T 1m7g_A 202 T 202 (211)
T ss_dssp H
T ss_pred H
Confidence 5
No 201
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.85 E-value=0.0041 Score=66.17 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=32.2
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeee--ehhhHHh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI--SLGKLLR 262 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i--s~gdLlr 262 (520)
...|+-|++.||||+|||++|+.||... ++..+ +..+|+.
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e~-~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANRT-DATFIRVIGSELVQ 281 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHHH-TCEEEEEEGGGGCC
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhcc-CCCeEEEEhHHhhc
Confidence 3567789999999999999999999986 77665 4555554
No 202
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.83 E-value=0.0048 Score=65.01 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=31.9
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeee--ehhhHHh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI--SLGKLLR 262 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i--s~gdLlr 262 (520)
...|+-|++.||||+|||++|+.||... ++..+ +..+++.
T Consensus 213 i~~prGvLLyGPPGTGKTlLAkAiA~e~-~~~fi~v~~s~l~s 254 (437)
T 4b4t_I 213 IKPPKGVILYGAPGTGKTLLAKAVANQT-SATFLRIVGSELIQ 254 (437)
T ss_dssp CCCCSEEEEESSTTTTHHHHHHHHHHHH-TCEEEEEESGGGCC
T ss_pred CCCCCCCceECCCCchHHHHHHHHHHHh-CCCEEEEEHHHhhh
Confidence 3456779999999999999999999986 77665 4445554
No 203
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.80 E-value=0.0058 Score=61.34 Aligned_cols=37 Identities=14% Similarity=0.194 Sum_probs=29.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCC-------CeeeehhhH
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPN-------WTQISLGKL 260 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g-------~~~is~gdL 260 (520)
..+.+|.|+|++||||||+++.|+..+ + +..++++..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l-~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL-SRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH-TTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH-hhCCCCCeEEEEecCCc
Confidence 456789999999999999999999865 4 455566654
No 204
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.80 E-value=0.0067 Score=59.94 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=24.5
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCeeee
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQIS 256 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is 256 (520)
-++|+|||||||||+++.|+..+ +...+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~~-~~~~i~ 74 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANES-GLNFIS 74 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHT-TCEEEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHc-CCCEEE
Confidence 39999999999999999999986 654443
No 205
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.80 E-value=0.015 Score=55.85 Aligned_cols=133 Identities=6% Similarity=-0.003 Sum_probs=69.9
Q ss_pred ccCcccCcHHHHHHHHHHccCCCCCCCCHHHHH------------HHHHHHHhcCCCCCcEEEeCCC----------CC-
Q psy11031 12 LDFPSHRNPLKMFNLFVSEEVKDFSFLSSKTVT------------EVLMLEMKMSPAAKAFLISGYP----------RN- 68 (520)
Q Consensus 12 ~~~~~h~s~G~~l~~~i~~G~~~g~lVPdelv~------------~ll~~~l~~~~~~~G~ILDGFP----------Rt- 68 (520)
...|..+.+|..+++++.... . +...... ++|...+. ..+.+|.|=|. |.
T Consensus 57 treP~~t~~g~~ir~~l~~~~---~-~~~~~e~llf~a~R~~~~~~~I~paL~---~g~~VI~DRy~~S~~Ayq~~~~g~ 129 (223)
T 3ld9_A 57 TREPGGTLLNESVRNLLFKAQ---G-LDSLSELLFFIAMRREHFVKIIKPSLM---QKKIVICDRFIDSTIAYQGYGQGI 129 (223)
T ss_dssp EESSCSSHHHHHHHHHHHTCS---S-CCHHHHHHHHHHHHHHHHHHTHHHHHH---TTCEEEEESCHHHHHHHHTTTTCC
T ss_pred eeCCCCChHHHHHHHHHhCCC---C-CCHHHHHHHHHHHHHHHHHHHHHHHHh---cCCeEEEccchhhHHHhccccCCc
Confidence 346777889999999998633 2 3332221 11122222 12345667655 22
Q ss_pred -HHhHHHHHHhc--CCcCEEEEEEcCHHHHHHHhhhCccCCccch--HHHHHHHHHHHhccchHHHHhhhCCcEEEEeCC
Q psy11031 69 -MRDVVEYSDKI--KTINGVILIAWRQSLLERQIDYGAKLGHVIL--SLARMELANFYQNVTPVTDFFDQRGMLIAVNGE 143 (520)
Q Consensus 69 -~~QA~~~~~~~--~~pd~VI~L~~pd~~l~~Rl~rg~~~~r~d~--e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~ 143 (520)
.+-...+.... ..||++|+|++|.++..+|+.+ .|.+. ....+|+...+.. +.+.|. ..++.|||+
T Consensus 130 ~~~~~~~l~~~~~~~~PDl~I~Ldv~~e~~~~Ri~r----dr~E~~~~e~~~rv~~~y~~---la~~~~--~~~~vIDa~ 200 (223)
T 3ld9_A 130 DCSLIDQLNDLVIDVYPDITFIIDVDINESLSRSCK----NGYEFADMEFYYRVRDGFYD---IAKKNP--HRCHVITDK 200 (223)
T ss_dssp CHHHHHHHHHHHCSSCCSEEEEEECC--------------------CHHHHHHHHHHHHH---HHHHCT--TTEEEEESS
T ss_pred cHHHHHHHHHHhhcCCCCeEEEEeCCHHHHHHHhcc----CccccchHHHHHHHHHHHHH---HHHHCC--CCEEEEcCC
Confidence 11111111111 4799999999999999999821 23221 2344444433322 344454 348999999
Q ss_pred CChHHHHHHHHHHHHHHh
Q psy11031 144 RNPVEVYADFRTAVLKIL 161 (520)
Q Consensus 144 ~~~eeV~~~i~~~l~~~~ 161 (520)
+++++| ++|.+.|...+
T Consensus 201 ~sieeV-~~I~~~l~~~l 217 (223)
T 3ld9_A 201 SETYDI-DDINFVHLEVI 217 (223)
T ss_dssp CSSSCC-CHHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHHHHH
Confidence 999999 99999998876
No 206
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.79 E-value=0.0055 Score=62.63 Aligned_cols=36 Identities=14% Similarity=0.181 Sum_probs=28.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeee--ehhhHH
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI--SLGKLL 261 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i--s~gdLl 261 (520)
+..|+|.||||+|||++|+.|++.+ +...+ ++.++.
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~-~~~~~~~~~~~l~ 88 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL-DVPFTMADATTLT 88 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT-TCCEEEEEHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc-CCCEEEechHHhc
Confidence 4569999999999999999999986 76555 444443
No 207
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.77 E-value=0.005 Score=65.25 Aligned_cols=33 Identities=21% Similarity=0.362 Sum_probs=29.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLG 258 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~g 258 (520)
+..|+++||||+||||+|+.|++.+ ++.+++++
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l-~~~~~~v~ 82 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLA-NAPFIKVE 82 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT-TCCEEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHc-CCCceeec
Confidence 4569999999999999999999997 88877664
No 208
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.75 E-value=0.0071 Score=60.82 Aligned_cols=38 Identities=26% Similarity=0.343 Sum_probs=30.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCee--eehhhHHh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQ--ISLGKLLR 262 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~--is~gdLlr 262 (520)
.+.-|+|.||||+|||++|+.|++.. +... +++.+++.
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~-~~~~~~v~~~~l~~ 89 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA-NSTFFSVSSSDLVS 89 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH-TCEEEEEEHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH-CCCEEEEchHHHhh
Confidence 35679999999999999999999985 6554 45556554
No 209
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.75 E-value=0.066 Score=49.74 Aligned_cols=93 Identities=11% Similarity=0.080 Sum_probs=63.9
Q ss_pred CCcEEEeCCCCCHHhHHHHHHhcCCcC-EEEEEE-cCHHHHHHHhh-hCccCCccchHHHHHHHHHHHhccchHHHHhhh
Q psy11031 57 AKAFLISGYPRNMRDVVEYSDKIKTIN-GVILIA-WRQSLLERQID-YGAKLGHVILSLARMELANFYQNVTPVTDFFDQ 133 (520)
Q Consensus 57 ~~G~ILDGFPRt~~QA~~~~~~~~~pd-~VI~L~-~pd~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~ 133 (520)
.+++|+|+.|....+. .+.....+ .+|+|+ +|.+++.+|+. |+ +.+++.+.+|+..+.+...+. |...
T Consensus 103 g~~vi~d~~~~~~~~l---~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~----~~~~~~i~~rl~~~~~~~~~~--~~~~ 173 (204)
T 2qor_A 103 GKICLFEMNINGVKQL---KESKHIQDGIYIFVKPPSIDILLGRLKNRN----TEKPEEINKRMQELTREMDEA--DKVG 173 (204)
T ss_dssp TCEEEEECCHHHHHHH---HHCSSCSCCEEEEEECSCHHHHHHHHHTCT----TSCHHHHHHHHHHHHHHHHHH--HHHT
T ss_pred CCeEEEEECHHHHHHH---HHhcCCCCeEEEEEcCCCHHHHHHHHHHcC----CCCHHHHHHHHHHHHHHHHHh--hhcc
Confidence 5689999988766554 22221113 789998 99999999994 43 335678899999887655442 2222
Q ss_pred CCcEEEEeCCCChHHHHHHHHHHHHHHh
Q psy11031 134 RGMLIAVNGERNPVEVYADFRTAVLKIL 161 (520)
Q Consensus 134 ~~~l~~Ida~~~~eeV~~~i~~~l~~~~ 161 (520)
.. ++.+|. ++++++++|.++|...+
T Consensus 174 ~d-~vi~n~--~~e~~~~~i~~~i~~~~ 198 (204)
T 2qor_A 174 FN-YFIVND--DLARTYAELREYLLGSY 198 (204)
T ss_dssp CS-EEEECS--SHHHHHHHHHHHHHHHC
T ss_pred Cc-EEEECc--CHHHHHHHHHHHHHHHh
Confidence 22 344454 89999999999998765
No 210
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.64 E-value=0.0093 Score=55.95 Aligned_cols=39 Identities=13% Similarity=0.100 Sum_probs=30.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhC----CCCeeeehhhHHh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDY----PNWTQISLGKLLR 262 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~----~g~~~is~gdLlr 262 (520)
.+..++|.|+||+||||+++.+++.+ ..+.++++.++..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~ 93 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHAS 93 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence 46789999999999999999998753 1346677766654
No 211
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.64 E-value=0.0064 Score=59.31 Aligned_cols=33 Identities=24% Similarity=0.404 Sum_probs=27.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeee
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQIS 256 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is 256 (520)
..+..++|.|+||+|||++|+.|++.. +...+.
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~-~~~~~~ 94 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEES-NFPFIK 94 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHH-TCSEEE
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHh-CCCEEE
Confidence 446679999999999999999999986 765543
No 212
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.63 E-value=0.17 Score=45.37 Aligned_cols=89 Identities=12% Similarity=0.068 Sum_probs=56.8
Q ss_pred CCcEEEe-CCCCCHHhHHHHHHhcCCcC-EEEEEEcCHHHHHHHhh-hCccCCcc-chHHHHHHHHHHHhccchHHHHhh
Q psy11031 57 AKAFLIS-GYPRNMRDVVEYSDKIKTIN-GVILIAWRQSLLERQID-YGAKLGHV-ILSLARMELANFYQNVTPVTDFFD 132 (520)
Q Consensus 57 ~~G~ILD-GFPRt~~QA~~~~~~~~~pd-~VI~L~~pd~~l~~Rl~-rg~~~~r~-d~e~i~~Rl~~Y~~~t~pvi~~Y~ 132 (520)
..++|+| |+++. .+. .+.... .++ .+|+|+||.+++.+|+. |+. +. +.+.+...+..|. ++ +|.
T Consensus 80 ~~~~vi~~~~~~~-~~~-~~l~~~-~~~~~vv~l~~~~e~~~~R~~~R~~---~~~~~~~~~~~~~~~~----~~--~~~ 147 (175)
T 1knq_A 80 NKVSLIVCSALKK-HYR-DLLREG-NPNLSFIYLKGDFDVIESRLKARKG---HFFKTQMLVTQFETLQ----EP--GAD 147 (175)
T ss_dssp CSEEEEECCCCSH-HHH-HHHHTT-CTTEEEEEEECCHHHHHHHHHTSTT---CCCCHHHHHHHHHHCC----CC--CTT
T ss_pred CCcEEEEeCchHH-HHH-HHHHhc-CCCEEEEEEECCHHHHHHHHHhccC---CCCchHHHHHHHHhhh----Cc--ccC
Confidence 4578998 77653 222 233332 246 79999999999999994 431 22 2334444443332 11 244
Q ss_pred hCCcEEEEeCCCChHHHHHHHHHHHH
Q psy11031 133 QRGMLIAVNGERNPVEVYADFRTAVL 158 (520)
Q Consensus 133 ~~~~l~~Ida~~~~eeV~~~i~~~l~ 158 (520)
+. -.+.||++.+++++.++|.+.+.
T Consensus 148 ~~-~~~~Id~~~~~~~~~~~i~~~l~ 172 (175)
T 1knq_A 148 ET-DVLVVDIDQPLEGVVASTIEVIK 172 (175)
T ss_dssp CT-TEEEEECSSCHHHHHHHHHHHHH
T ss_pred CC-CeEEEeCCCCHHHHHHHHHHHHh
Confidence 33 37889999999999999988774
No 213
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.57 E-value=0.0094 Score=56.55 Aligned_cols=34 Identities=26% Similarity=0.295 Sum_probs=28.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGK 259 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gd 259 (520)
....|+|.|++||||||+|..|+++. + ..|+.+.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g-~-~iIsdDs 66 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG-H-RLIADDR 66 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT-C-EEEESSE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC-C-eEEecch
Confidence 45779999999999999999999885 4 7777763
No 214
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.57 E-value=0.009 Score=57.54 Aligned_cols=36 Identities=22% Similarity=0.293 Sum_probs=27.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCCC--eeeehhhHHh
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPNW--TQISLGKLLR 262 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g~--~~is~gdLlr 262 (520)
+-++|+|||||||||+++.|+... +. ..++..++..
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~~-~~~~i~~~~~~~~~ 87 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGEA-RVPFITASGSDFVE 87 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT-TCCEEEEEHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh-CCCEEEeeHHHHHH
Confidence 349999999999999999999875 44 4444445444
No 215
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.56 E-value=0.087 Score=49.25 Aligned_cols=90 Identities=11% Similarity=0.072 Sum_probs=62.2
Q ss_pred CcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHhh-hCccCCccchHHHHHHHHHHHhccchHHHHhhhCCc
Q psy11031 58 KAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQID-YGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGM 136 (520)
Q Consensus 58 ~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~ 136 (520)
.++++.|+|...+.. |. ..+|.+|+|+||.+++.+|+. |+. .+.+.+.+|+... .+...++....
T Consensus 107 ~~~vi~~~~~l~~~~--~~---~~~d~vi~l~~~~e~~~~Rl~~R~~----~~~~~~~~~~~~~----~~~~~~~~~ad- 172 (218)
T 1vht_A 107 SPYVLWVVPLLVENS--LY---KKANRVLVVDVSPETQLKRTMQRDD----VTREHVEQILAAQ----ATREARLAVAD- 172 (218)
T ss_dssp SSEEEEECTTTTTTT--GG---GGCSEEEEEECCHHHHHHHHHHHHT----CCHHHHHHHHHHS----CCHHHHHHHCS-
T ss_pred CCEEEEEeeeeeccC--cc---ccCCEEEEEECCHHHHHHHHHHcCC----CCHHHHHHHHHhc----CChHHHHHhCC-
Confidence 467777778766553 22 257999999999999999984 421 1344566666541 23334443333
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHhc
Q psy11031 137 LIAVNGERNPVEVYADFRTAVLKILN 162 (520)
Q Consensus 137 l~~Ida~~~~eeV~~~i~~~l~~~~~ 162 (520)
+.||++.+++++.++|.+.+...+.
T Consensus 173 -~vId~~~~~~~~~~~I~~~l~~~~~ 197 (218)
T 1vht_A 173 -DVIDNNGAPDAIASDVARLHAHYLQ 197 (218)
T ss_dssp -EEEECSSCTTSHHHHHHHHHHHHHH
T ss_pred -EEEECCCCHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999987663
No 216
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.56 E-value=0.15 Score=47.09 Aligned_cols=89 Identities=6% Similarity=-0.011 Sum_probs=61.2
Q ss_pred CCcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHhh-hCccCCccchHHHHHHHHHHHhccchHHHHhhhCC
Q psy11031 57 AKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQID-YGAKLGHVILSLARMELANFYQNVTPVTDFFDQRG 135 (520)
Q Consensus 57 ~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~ 135 (520)
..++|+|| |-..+.- +. ...|.||+|+||.+++.+|+. |. ++ +.+.+.+|+.. ..+..++|+...
T Consensus 105 ~~~vv~~~-~~l~e~~--~~---~~~d~vi~l~~~~e~~~~Rl~~R~---~~-~~e~~~~r~~~----q~~~~~~~~~ad 170 (206)
T 1jjv_A 105 APYTLFVV-PLLIENK--LT---ALCDRILVVDVSPQTQLARSAQRD---NN-NFEQIQRIMNS----QVSQQERLKWAD 170 (206)
T ss_dssp SSEEEEEC-TTTTTTT--CG---GGCSEEEEEECCHHHHHHHHC---------CHHHHHHHHHH----SCCHHHHHHHCS
T ss_pred CCEEEEEe-chhhhcC--cH---hhCCEEEEEECCHHHHHHHHHHcC---CC-CHHHHHHHHHh----cCChHHHHHhCC
Confidence 45788898 6433321 21 246899999999999999993 42 22 35667777765 245666676554
Q ss_pred cEEEEeCCCChH----HHHHHHHHHHHHHh
Q psy11031 136 MLIAVNGERNPV----EVYADFRTAVLKIL 161 (520)
Q Consensus 136 ~l~~Ida~~~~e----eV~~~i~~~l~~~~ 161 (520)
+.||.+.+++ ++.++|.+.+...+
T Consensus 171 --~vIdn~~~~~~~~~~~~~~i~~~~~~~~ 198 (206)
T 1jjv_A 171 --DVINNDAELAQNLPHLQQKVLELHQFYL 198 (206)
T ss_dssp --EEEECCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred --EEEECCCCccccHHHHHHHHHHHHHHHH
Confidence 5688888999 99999999887654
No 217
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.55 E-value=0.0047 Score=57.76 Aligned_cols=71 Identities=20% Similarity=0.255 Sum_probs=40.6
Q ss_pred CCEEEecCChh-hh---hccCCCCCHHHHHHHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHHHHHH
Q psy11031 335 PPMILIDCSKL-VL---HKGQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDD 409 (520)
Q Consensus 335 ~~VI~Ld~~~~-~~---~r~R~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~~i~~ 409 (520)
+.+++|+-|.. .+ -+.|..++++.+.+|+....... .+ .++......+.++ + +.++.++++.+.|...+.+
T Consensus 117 ~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~-~~-a~~~~~~D~iivn-d-~le~a~~~l~~ii~~~~~~ 191 (198)
T 1lvg_A 117 PIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDM-ES-SKEPGLFDLVIIN-D-DLDKAYATLKQALSEEIKK 191 (198)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHT-TG-GGSTTTCSEEEEC-S-SHHHHHHHHHHHTHHHHHH
T ss_pred cEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-HH-hhccCCceEEEEC-C-CHHHHHHHHHHHHHHHhhh
Confidence 44567775542 22 12455568899999988766542 11 1111112233333 3 6888999988888776533
No 218
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.53 E-value=0.0068 Score=56.02 Aligned_cols=23 Identities=22% Similarity=0.588 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhHHHHHHHhhC
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
++.|+|++||||||+++.|+..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999876
No 219
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.52 E-value=0.011 Score=54.64 Aligned_cols=38 Identities=13% Similarity=0.186 Sum_probs=28.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhC----CCCeeeehhhHHh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDY----PNWTQISLGKLLR 262 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~----~g~~~is~gdLlr 262 (520)
+..++|.|+||+||||+|+.|+... ..+.++++.+++.
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~ 95 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFR 95 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHH
Confidence 3679999999999999999998743 1334456665554
No 220
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.46 E-value=0.0064 Score=65.61 Aligned_cols=30 Identities=7% Similarity=0.086 Sum_probs=26.5
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCCCC
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNW 252 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~ 252 (520)
...+..|+|.|.+||||||+++.|++++ +.
T Consensus 392 ~~~~~~I~l~GlsGsGKSTIa~~La~~L-~~ 421 (511)
T 1g8f_A 392 PKQGFSIVLGNSLTVSREQLSIALLSTF-LQ 421 (511)
T ss_dssp GGCCEEEEECTTCCSCHHHHHHHHHHHH-TT
T ss_pred cccceEEEecccCCCCHHHHHHHHHHHH-HH
Confidence 3456899999999999999999999997 65
No 221
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=95.41 E-value=0.031 Score=55.62 Aligned_cols=146 Identities=12% Similarity=0.125 Sum_probs=83.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMK 302 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~ 302 (520)
..+.+|++.|..||||+++.++|.+.+ +=..+.+-.+ ..-+. .+..+.++ -....
T Consensus 73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~l-dPRg~~V~a~--------~~Pt~-eE~~~~yl---------------wR~~~ 127 (289)
T 3rhf_A 73 PKRLLLILQAMDTAGKGGIVSHVVGAM-DPQGVQLTAF--------KAPTD-EEKSHDFL---------------WRIEK 127 (289)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHHHS-CGGGEEEEEC--------CSCCH-HHHTSCTT---------------HHHHT
T ss_pred CCcEEEEEECCCCCChHHHHHHHHHhc-CcCceEEEEC--------CCCCh-hhhcCCHH---------------HHHHH
Confidence 368899999999999999999999976 3333322111 00000 01111111 11111
Q ss_pred ccccCCCcEEEEeCC-------------------CCCHHHHHHHHhhcCCCCCE---EEecCChhhhh-c--cCCC----
Q psy11031 303 KTKYTEADGIVIDGF-------------------PREMSQLIDFENKYQIHPPM---ILIDCSKLVLH-K--GQID---- 353 (520)
Q Consensus 303 ~~~~~~~~G~ILDGF-------------------Prt~~Qae~l~~~~~~p~~V---I~Ld~~~~~~~-r--~R~d---- 353 (520)
+.+..+.-.|.|+. -+-++++..||..+.....+ |||+++.+... | .|.+
T Consensus 128 -~lP~~G~I~IFdRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIskeEQ~kR~~~R~~dP~k 206 (289)
T 3rhf_A 128 -QVPAAGMVGVFDRSQYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNISKDEQKKRLIARLDDPSK 206 (289)
T ss_dssp -TCCCTTCEEEEESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCHHHHHHHHHHHHHCGGG
T ss_pred -hCCCCCeEEEEeCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCHHHHHHHHHHHhcCCcc
Confidence 12333444555542 13366788999888766654 78999986432 1 1111
Q ss_pred ---CCHHHH--HHHHHHHHHHhHHHHHHhhh-CCCEEEEECCCCHHH
Q psy11031 354 ---NSVSAF--RRRLELFRERTLPMLRAMDV-ETRLTIVDGDTQLPQ 394 (520)
Q Consensus 354 ---D~~e~~--~~Rl~~f~~~~~~l~~~y~~-~~~l~~IDa~~~~e~ 394 (520)
-++.-+ +++++.|.+....++..-+. ..-+++|+|+.-...
T Consensus 207 ~WK~s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~VV~addK~~a 253 (289)
T 3rhf_A 207 HWKYSRGDLAERAYWDDYMDAYSVAFEKTSTEIAPWHVVPANKKWYA 253 (289)
T ss_dssp GGGCCHHHHHHHTTHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCCHHHH
Confidence 133333 34568888888887776543 246999999876443
No 222
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.39 E-value=0.0078 Score=59.17 Aligned_cols=36 Identities=22% Similarity=0.365 Sum_probs=27.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCee--eehhhH
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQ--ISLGKL 260 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~--is~gdL 260 (520)
.+..++|.|+||+|||++|+.|++.+ +... +++.++
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l-~~~~~~i~~~~~ 86 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLA-NAPFIKVEATKF 86 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH-TCCEEEEEGGGG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh-CCCEEEEcchhc
Confidence 35569999999999999999999986 6544 454444
No 223
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.36 E-value=0.011 Score=60.64 Aligned_cols=37 Identities=27% Similarity=0.332 Sum_probs=29.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeee--ehhhHHh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI--SLGKLLR 262 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i--s~gdLlr 262 (520)
+.-|+|.||||+|||++|+.|++.+ +...+ ++.+++.
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~-~~~~~~v~~~~l~~ 122 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEA-NSTFFSVSSSDLVS 122 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHH-TCEEEEEEHHHHHS
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh-CCCEEEeeHHHHhh
Confidence 4569999999999999999999986 76554 5556654
No 224
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.35 E-value=0.012 Score=59.41 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=28.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCC--CeeeehhhHHh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPN--WTQISLGKLLR 262 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g--~~~is~gdLlr 262 (520)
+.-|+|.||||+|||++|+.+++...+ +..++..+++.
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred CceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh
Confidence 467999999999999999999987423 34455555544
No 225
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.32 E-value=0.01 Score=60.88 Aligned_cols=31 Identities=19% Similarity=0.267 Sum_probs=26.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeeee
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQIS 256 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is 256 (520)
+..|+|.|+||+|||++|+.|++.+ +...+.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l-~~~~~~ 102 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL-DIPIAI 102 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT-TCCEEE
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh-CCCEEE
Confidence 4559999999999999999999987 765543
No 226
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.30 E-value=0.012 Score=60.16 Aligned_cols=38 Identities=21% Similarity=0.279 Sum_probs=30.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeee--ehhhHHh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI--SLGKLLR 262 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i--s~gdLlr 262 (520)
.+.-|+|.|+||+|||++|+.|++.. +...+ ++.+++.
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~-~~~~~~i~~~~l~~ 155 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS-GATFFSISASSLTS 155 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT-TCEEEEEEGGGGCC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc-CCeEEEEehHHhhc
Confidence 45679999999999999999999986 76554 4545443
No 227
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.17 E-value=0.053 Score=48.92 Aligned_cols=126 Identities=7% Similarity=-0.050 Sum_probs=71.7
Q ss_pred HHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHH---HHHhcCCcCEEEEEEcCHHH
Q psy11031 20 PLKMFNLFVSEEVKDFSFLSS--KTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVE---YSDKIKTINGVILIAWRQSL 94 (520)
Q Consensus 20 ~G~~l~~~i~~G~~~g~lVPd--elv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~---~~~~~~~pd~VI~L~~pd~~ 94 (520)
.|..+++++..|...+...+. +.+.+++...+.. ...-+|+|+...+...... +......+-.+|+|+||.++
T Consensus 40 ~g~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~l~~--~g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~ 117 (183)
T 2vli_A 40 MGQALRKLTPGFSGDPQEHPMWIPLMLDALQYASRE--AAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNV 117 (183)
T ss_dssp HHHHHHHTSTTCCSCGGGSTTHHHHHHHHHHHHHHH--CSSCEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHH
T ss_pred hHHHHHHhCccccchhhhhHHHHHHHHHHHHHHHHh--CCCcEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHH
Confidence 477777666533321111121 3455666665542 2344788977655432222 22222223366999999999
Q ss_pred HHHHhh-hCccCCcc-chHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCC-CChHHHHHHHHHHHHHHh
Q psy11031 95 LERQID-YGAKLGHV-ILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGE-RNPVEVYADFRTAVLKIL 161 (520)
Q Consensus 95 l~~Rl~-rg~~~~r~-d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~-~~~eeV~~~i~~~l~~~~ 161 (520)
+.+|+. |+ .|. .. .++..+.+...++ + | . + .||++ .+++++.++|.+.+...+
T Consensus 118 ~~~R~~~R~---~r~~~~----~~~~~~~~~~~~~-~-~---~-~-~Id~~~~~~~~~~~~I~~~l~~~~ 173 (183)
T 2vli_A 118 VLERLRRDG---QPQVNV----GTVEDRLNELRGE-Q-F---Q-T-HIDTAGLGTQQVAEQIAAQVGLTL 173 (183)
T ss_dssp HHHHHHTC-------CCH----HHHHHHHHHHTSG-G-G---C-S-EEECTTCCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHhcc---ccchhH----HHHHHHHHhhccc-c-c---c-e-EeeCCCCCHHHHHHHHHHHHHHhc
Confidence 999994 43 122 22 3444444444454 3 3 2 3 89998 899999999999886544
No 228
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.16 E-value=0.01 Score=56.36 Aligned_cols=165 Identities=13% Similarity=0.221 Sum_probs=79.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhh-cccccCCc---c-hHHHHh------hhhcC----Cc
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFA-NIEDDGEG---L-NSRIKS------SVSAG----DF 287 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~-~~~~~~t~---~-g~~i~~------~l~~G----~~ 287 (520)
....++.|+||.||||||+++.|+..++|-..+.. ++..... .....+.. . -..... ++..+ ..
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~pG~i~~g~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 99 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEFPNYFYFSV-SCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYANNF 99 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHSTTTEEECC-CEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCCcEEEee-cccCCCCCcccccCCeEEECCHHHHHHhhhccchhhhhhccccc
Confidence 34678999999999999999999987643333311 1100000 00000000 0 001111 11111 00
Q ss_pred --cchHHHHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcC-CCCCEEEecCCh-hhhh---ccCCCCCHHHHH
Q psy11031 288 --VNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQ-IHPPMILIDCSK-LVLH---KGQIDNSVSAFR 360 (520)
Q Consensus 288 --vPd~lv~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~-~p~~VI~Ld~~~-~~~~---r~R~dD~~e~~~ 360 (520)
.|... +.+.+. ...-+++| .++.-.+.....+. ..+..+++.-++ ..+. +.+..++++.+.
T Consensus 100 ~g~~~~~----i~~~l~-----~~~~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~ 167 (218)
T 1z6g_A 100 YGTLKSE----YDKAKE-----QNKICLFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQ 167 (218)
T ss_dssp EEEEHHH----HHHHHH-----TTCEEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHH
T ss_pred CCCcHHH----HHHHHh-----CCCcEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHH
Confidence 22222 233333 12345666 45554554444431 122456665443 3321 345556888999
Q ss_pred HHHHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031 361 RRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK 405 (520)
Q Consensus 361 ~Rl~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~ 405 (520)
+|+........ + .+- ..-..+.++ .+.++.+..+...|..
T Consensus 168 ~~l~~~~~~~~-~-~h~-~~~d~iiv~--~~~~ea~~~~~~ii~~ 207 (218)
T 1z6g_A 168 KRMEQLNIELH-E-ANL-LNFNLSIIN--DDLTLTYQQLKNYLLN 207 (218)
T ss_dssp HHHHHHHHHHH-H-HTT-SCCSEEEEC--SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-h-hcc-cCCCEEEEC--CCHHHHHHHHHHHHHH
Confidence 99887765543 1 110 111233332 3688888887777765
No 229
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.15 E-value=0.0089 Score=53.60 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
+..++|.|+||+|||++|+.+++.+
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999998763
No 230
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.14 E-value=0.0045 Score=60.09 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=27.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeee--ehhhHH
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI--SLGKLL 261 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i--s~gdLl 261 (520)
+.-++|.|+||+|||++|+.|++.. +...+ ++.++.
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~-~~~~~~v~~~~~~ 81 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEA-HVPFFSMGGSSFI 81 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHH-TCCCCCCCSCTTT
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh-CCCEEEechHHHH
Confidence 3448899999999999999999975 55444 444443
No 231
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.13 E-value=0.014 Score=58.41 Aligned_cols=39 Identities=13% Similarity=0.115 Sum_probs=30.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhC----CCCeeeehhhHHh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDY----PNWTQISLGKLLR 262 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~----~g~~~is~gdLlr 262 (520)
.+..++|.|+||+||||+|+.|+..+ ..+.++++.++..
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~ 78 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQ 78 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHH
Confidence 34569999999999999999998742 2567778777655
No 232
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.13 E-value=0.015 Score=56.95 Aligned_cols=36 Identities=22% Similarity=0.293 Sum_probs=27.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCCC--eeeehhhHHh
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPNW--TQISLGKLLR 262 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g~--~~is~gdLlr 262 (520)
+-++|+|+|||||||+++.|+... +. ..++..++..
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~~-~~~~i~~~~~~~~~ 111 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGEA-RVPFITASGSDFVE 111 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT-TCCEEEEEHHHHHH
T ss_pred CeEEEECCCcChHHHHHHHHHHHc-CCCEEEecHHHHHH
Confidence 349999999999999999999875 44 4444445544
No 233
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.12 E-value=0.012 Score=55.00 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
....++.|+||.||||||+++.|+..+
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 346789999999999999999999876
No 234
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=95.07 E-value=0.34 Score=54.30 Aligned_cols=161 Identities=14% Similarity=0.246 Sum_probs=84.6
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhccc---ccCCc-----chHHHHhhhhcCCccch---
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIE---DDGEG-----LNSRIKSSVSAGDFVNR--- 290 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~---~~~t~-----~g~~i~~~l~~G~~vPd--- 290 (520)
...+..|+|+|| ||+|++++|.+.++.-..+++....| .-. ..|.. .-+.+...+.+|+.+--
T Consensus 528 ~~~~r~vvl~GP---~K~tl~~~L~~~~~~~~~~~vs~TTR---~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~flE~~~~ 601 (721)
T 2xkx_A 528 VHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTR---PKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQY 601 (721)
T ss_pred CCCCCEEEEECC---CHHHHHHHHHHhCccceeeccccccc---CCCCCccCCceeEEecCHHHHHHHHhcCCceEEEEE
Confidence 345567888888 49999999998864334445544444 111 11111 12344555555554321
Q ss_pred --H---HHHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCCh-hhhh--ccCCCCCHHHHHHH
Q psy11031 291 --D---VVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSK-LVLH--KGQIDNSVSAFRRR 362 (520)
Q Consensus 291 --~---lv~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~-~~~~--r~R~dD~~e~~~~R 362 (520)
. +-.+-+++.+. .++.+|||.= ..-+..+..... .+.+||+..+. +.+. ++|. +++.+++|
T Consensus 602 ~g~~YGt~~~~v~~~~~-----~g~~~ildi~---~~~~~~l~~~~~-~p~~ifi~pps~~~L~~l~~R~--t~~~~~~r 670 (721)
T 2xkx_A 602 NSHLYGTSVQSVREVAE-----QGKHCILDVS---ANAVRRLQAAHL-HPIAIFIRPRSLENVLEINKRI--TEEQARKA 670 (721)
T ss_pred CCccceeeHHHHHHHHH-----CCCcEEEeCC---HHHHHHHHhccc-CCEEEEEeCCcHHHHHHHhccC--CHHHHHHH
Confidence 0 11222333344 4678999984 333444443222 23788888654 3332 2343 34567888
Q ss_pred HHHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031 363 LELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK 405 (520)
Q Consensus 363 l~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~ 405 (520)
++.-.+.-.....+|+ . +|+.+ +.++.++++.++|..
T Consensus 671 l~~a~~~e~~~~~~fd----~-vi~Nd-~l~~a~~~l~~~i~~ 707 (721)
T 2xkx_A 671 FDRATKLEQEFTECFS----A-IVEGD-SFEEIYHKVKRVIED 707 (721)
T ss_pred HHHHHHHHHhccccCc----E-EEECc-CHHHHHHHHHHHHHh
Confidence 8765322111112232 2 35544 788888888777754
No 235
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.02 E-value=0.015 Score=58.25 Aligned_cols=33 Identities=9% Similarity=0.055 Sum_probs=27.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeeh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISL 257 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~ 257 (520)
.+..++|.|+||+|||++|+.|++.. +...+.+
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~~-~~~~~~~ 86 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYEM-SANIKTT 86 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHT-TCCEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh-CCCeEEe
Confidence 34569999999999999999999986 7665544
No 236
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.01 E-value=0.012 Score=59.65 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=24.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCe
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWT 253 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~ 253 (520)
+..++|+|||||||||+++.|+..+ +..
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l-~~~ 78 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASEL-QTN 78 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHH-TCC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh-CCC
Confidence 4669999999999999999999886 654
No 237
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.97 E-value=0.016 Score=65.83 Aligned_cols=39 Identities=15% Similarity=0.270 Sum_probs=32.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeee--ehhhHHh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI--SLGKLLR 262 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i--s~gdLlr 262 (520)
..|+-|+|.||||+|||++|+.||... |...+ +..+++.
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~el-g~~~~~v~~~~l~s 276 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANET-GAFFFLINGPEIMS 276 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTT-TCEEEEEEHHHHHS
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHh-CCeEEEEEhHHhhc
Confidence 457789999999999999999999987 87665 4446654
No 238
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.93 E-value=0.1 Score=46.51 Aligned_cols=92 Identities=8% Similarity=0.075 Sum_probs=58.6
Q ss_pred CCcEEEe-C--CCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHhh--hCccCCccc--hHHHHHHHHHHHhccchHHH
Q psy11031 57 AKAFLIS-G--YPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQID--YGAKLGHVI--LSLARMELANFYQNVTPVTD 129 (520)
Q Consensus 57 ~~G~ILD-G--FPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl~--rg~~~~r~d--~e~i~~Rl~~Y~~~t~pvi~ 129 (520)
..++||+ | ++....... ++. .++.+|+|+||.+++.+|+. .+.. .|.. .+...+|+..+.....+
T Consensus 70 ~~~~vi~~g~~~~~~~~~~~-~l~---~~~~~i~l~~~~e~~~~R~~~~~r~~-~r~~~~~~~~~~~~~~~~~~~~~--- 141 (173)
T 1e6c_A 70 TPNRVVATGGGMVLLEQNRQ-FMR---AHGTVVYLFAPAEELALRLQASLQAH-QRPTLTGRPIAEEMEAVLREREA--- 141 (173)
T ss_dssp CSSEEEECCTTGGGSHHHHH-HHH---HHSEEEEEECCHHHHHHHHHHHHCSC-CCCCTTHHHHHHHHHHHHHHHHH---
T ss_pred cCCeEEECCCcEEeCHHHHH-HHH---cCCeEEEEECCHHHHHHHHhhccCCC-CCCcCCCCCHHHHHHHHHHHHHH---
Confidence 3467776 5 333333332 222 26899999999999999996 4311 2332 23445667776655544
Q ss_pred HhhhCCcEEEEeCC-CChHHHHHHHHHHHH
Q psy11031 130 FFDQRGMLIAVNGE-RNPVEVYADFRTAVL 158 (520)
Q Consensus 130 ~Y~~~~~l~~Ida~-~~~eeV~~~i~~~l~ 158 (520)
+|... .+.||++ .+++++.++|.+.+.
T Consensus 142 ~~~~~--~~~Id~~~~~~~~~~~~i~~~l~ 169 (173)
T 1e6c_A 142 LYQDV--AHYVVDATQPPAAIVCELMQTMR 169 (173)
T ss_dssp HHHHH--CSEEEETTSCHHHHHHHHHHHTT
T ss_pred HHHhC--cEEEECCCCCHHHHHHHHHHHhc
Confidence 45442 3578988 899999999988763
No 239
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.92 E-value=0.015 Score=60.34 Aligned_cols=34 Identities=12% Similarity=0.036 Sum_probs=28.3
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeee
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQIS 256 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is 256 (520)
...+..|+|.|||||||||+++.|+..+ +...++
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~-~g~~~~ 199 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELC-GGKALN 199 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHH-CCEEEC
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhc-CCcEEE
Confidence 3456789999999999999999999886 666555
No 240
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.90 E-value=0.0065 Score=53.64 Aligned_cols=33 Identities=15% Similarity=0.280 Sum_probs=25.3
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCC-CeeeehhhH
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPN-WTQISLGKL 260 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g-~~~is~gdL 260 (520)
-|+|.|+||+|||++|+.|++.. + +..+++.++
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~~-~~~~~~~~~~~ 62 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKNG-TPWVSPARVEY 62 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCTT-SCEECCSSTTH
T ss_pred cEEEECCCCccHHHHHHHHHHhC-CCeEEechhhC
Confidence 48999999999999999998765 4 344444444
No 241
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.87 E-value=0.017 Score=58.34 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
..+.+|.|+|++||||||+++.|+..+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 457899999999999999999998753
No 242
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.83 E-value=0.1 Score=50.88 Aligned_cols=115 Identities=16% Similarity=0.137 Sum_probs=70.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCcEEE---eCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHhhh-CccCCcc----
Q psy11031 37 FLSSKTVTEVLMLEMKMSPAAKAFLI---SGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQIDY-GAKLGHV---- 108 (520)
Q Consensus 37 lVPdelv~~ll~~~l~~~~~~~G~IL---DGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl~r-g~~~~r~---- 108 (520)
....++..+++.+.+.. ..++|| .|++....+. .++.. +.||+|++|.+++.+|+.. +.. .|.
T Consensus 102 ~~fr~~e~~~l~~l~~~---~~~~Via~GgG~v~~~~~~-~~l~~----~~vV~L~a~~e~l~~Rl~~~~~~-~Rpl~~~ 172 (250)
T 3nwj_A 102 SVFREKETEALKKLSLM---YHQVVVSTGGGAVIRPINW-KYMHK----GISIWLDVPLEALAHRIAAVGTG-SRPLLHD 172 (250)
T ss_dssp HHHHHHHHHHHHHHHHH---CSSEEEECCGGGGGSHHHH-HHHTT----SEEEEEECCHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHhh---cCCcEEecCCCeecCHHHH-HHHhC----CcEEEEECCHHHHHHHHhhcCCC-CCCcccC
Confidence 33334444455444332 134555 5788777766 33332 7899999999999999942 211 222
Q ss_pred ---c--hHHHHHHHHHHHhccchHHHHhhhCCcEEEEe-----------CCCChHHHHHHHHHHHHHHhcc
Q psy11031 109 ---I--LSLARMELANFYQNVTPVTDFFDQRGMLIAVN-----------GERNPVEVYADFRTAVLKILNK 163 (520)
Q Consensus 109 ---d--~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Id-----------a~~~~eeV~~~i~~~l~~~~~~ 163 (520)
+ .+....++....++..| +|.....++.+| .+.++++|.+.|.+.+...+..
T Consensus 173 ~~~~d~~~~~~~~l~~l~~eR~~---lY~~ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~~~~~~ 240 (250)
T 3nwj_A 173 DESGDTYTAALNRLSTIWDARGE---AYTKASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSYLEK 240 (250)
T ss_dssp -----CHHHHHHHHHHHHHHHHH---HHTTSSEEEEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHHHHT
T ss_pred CCcccchhhHHHHHHHHHHHHHH---HHhhCCEEEEecccccccccccCCCCCHHHHHHHHHHHHHHHhhc
Confidence 1 12344566666666665 476665566544 4589999999999999887743
No 243
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.81 E-value=0.02 Score=59.06 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=27.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeeh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISL 257 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~ 257 (520)
+.-|+|.|+||+|||++|+.|++.. +...+.+
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~-~~~~~~v 179 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAES-NATFFNI 179 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT-TCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh-cCcEEEe
Confidence 5679999999999999999999986 7765533
No 244
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.76 E-value=0.02 Score=61.61 Aligned_cols=33 Identities=18% Similarity=0.272 Sum_probs=28.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeeh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISL 257 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~ 257 (520)
.++.++|.||||+||||+|+.|++.+ |+..+.+
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l-~~~~i~i 108 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQEL-GYDILEQ 108 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHT-TCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc-CCCEEEE
Confidence 35679999999999999999999997 8877644
No 245
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.75 E-value=0.017 Score=50.99 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHhh
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k 248 (520)
.-|+|.|+||+|||++|+.|++.
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCEEEECCCCCCHHHHHHHHHHh
Confidence 34899999999999999999875
No 246
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.75 E-value=0.019 Score=53.28 Aligned_cols=26 Identities=12% Similarity=0.180 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
.+..++|.|+||+||||+++.+++.+
T Consensus 44 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 44 IHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp CCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999998865
No 247
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.73 E-value=0.015 Score=55.29 Aligned_cols=23 Identities=22% Similarity=0.497 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHH
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVL 246 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La 246 (520)
...++.|+||+||||||+++.|+
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 46789999999999999999887
No 248
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.72 E-value=0.067 Score=48.39 Aligned_cols=129 Identities=9% Similarity=0.072 Sum_probs=69.3
Q ss_pred cCcccCcHHHHHHHHHH---ccCCC-CCCCCHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHhcCCcCEEEEE
Q psy11031 13 DFPSHRNPLKMFNLFVS---EEVKD-FSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKTINGVILI 88 (520)
Q Consensus 13 ~~~~h~s~G~~l~~~i~---~G~~~-g~lVPdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L 88 (520)
+++ +++++..++..-- .|... ..++..+.+.+.+...+.. .|+|+|+..+..-.. ..++.||+|
T Consensus 36 ~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~vv~~~~~~~~~~-------~~~~~vi~L 103 (180)
T 3iij_A 36 GLK-YINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELDNQMRE----GGVIVDYHGCDFFPE-------RWFHIVFVL 103 (180)
T ss_dssp CCE-EEEHHHHHHHHTCEEEEETTTTEEEECHHHHHHHHHHHHHH----CCEEEECSCCTTSCG-------GGCSEEEEE
T ss_pred CCe-EEEHHHHHhhcchhhhhhhhhcCccCChHHHHHHHHHHHhc----CCEEEEechhhhcch-------hcCCEEEEE
Confidence 455 6777776655410 01111 1134566666666665543 588998776543222 127899999
Q ss_pred EcCHHHHHHHhh-hCccCCccchHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHHHH
Q psy11031 89 AWRQSLLERQID-YGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVL 158 (520)
Q Consensus 89 ~~pd~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l~ 158 (520)
+||.+++.+|+. |+..........-..++....+ .-...|.. ..++.+++ .++++|...+..++.
T Consensus 104 ~~~~e~l~~R~~~r~~~~~~~~~~~~~~~~~~~~~---~~~~~y~~-~~~i~~~~-~~~~ev~~~v~~i~~ 169 (180)
T 3iij_A 104 RTDTNVLYERLETRGYNEKKLTDNIQCEIFQVLYE---EATASYKE-EIVHQLPS-NKPEELENNVDQILK 169 (180)
T ss_dssp ECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHH---HHHHHSCG-GGEEEEEC-SSHHHHHHHHHHHHH
T ss_pred ECCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH---HHHHHcCC-CeEEEcCC-CCHHHHHHHHHHHHH
Confidence 999999999994 5322001111111122222222 22344543 45666765 789999444444443
No 249
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.71 E-value=0.33 Score=44.71 Aligned_cols=90 Identities=10% Similarity=0.020 Sum_probs=58.1
Q ss_pred CCcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHhh-hCccCCcc-chHHHHHHHHHHHhccchHHHHhhhC
Q psy11031 57 AKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQID-YGAKLGHV-ILSLARMELANFYQNVTPVTDFFDQR 134 (520)
Q Consensus 57 ~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~-d~e~i~~Rl~~Y~~~t~pvi~~Y~~~ 134 (520)
..++|+|.-.....+. .+.........+|+|+||.+++.+|+. |+. +. +.+.+...+..+. .+|.+.
T Consensus 101 g~~viid~~~~~~~~~-~~l~~~~~~~~vv~l~~~~e~l~~Rl~~R~~---~~~~~~~l~~~~~~~~-------~~~~~~ 169 (200)
T 4eun_A 101 GVSTIITCSALKRTYR-DVLREGPPSVDFLHLDGPAEVIKGRMSKREG---HFMPASLLQSQLATLE-------ALEPDE 169 (200)
T ss_dssp TCCEEEEECCCCHHHH-HHHTTSSSCCEEEEEECCHHHHHHHHTTCSC---CSSCGGGHHHHHHHCC-------CCCTTS
T ss_pred CCCEEEEchhhhHHHH-HHHHHhCCceEEEEEeCCHHHHHHHHHhccc---CCCCHHHHHHHHHHhC-------CCCCCC
Confidence 3567887644443333 444444456689999999999999994 432 21 2334444443332 234432
Q ss_pred CcEEEEeCCCChHHHHHHHHHHHH
Q psy11031 135 GMLIAVNGERNPVEVYADFRTAVL 158 (520)
Q Consensus 135 ~~l~~Ida~~~~eeV~~~i~~~l~ 158 (520)
..+.||++.+++++.++|.+.+.
T Consensus 170 -~~~~Id~~~~~~e~~~~I~~~l~ 192 (200)
T 4eun_A 170 -SGIVLDLRQPPEQLIERALTWLD 192 (200)
T ss_dssp -CEEEEETTSCHHHHHHHHHHHHC
T ss_pred -CeEEEECCCCHHHHHHHHHHHHH
Confidence 37889999999999999998875
No 250
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.66 E-value=0.13 Score=45.67 Aligned_cols=87 Identities=13% Similarity=0.202 Sum_probs=54.2
Q ss_pred CCcEEEe-C--CCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHhh-hCccCCccc----hHHHHHHHHHHHhccchHH
Q psy11031 57 AKAFLIS-G--YPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQID-YGAKLGHVI----LSLARMELANFYQNVTPVT 128 (520)
Q Consensus 57 ~~G~ILD-G--FPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d----~e~i~~Rl~~Y~~~t~pvi 128 (520)
..+|||+ | .+...... .++. .++.+|+|+||.+++.+|+. |+ .|.. .+.++.++... .
T Consensus 69 ~~~~Vi~~g~~~~~~~~~~-~~l~---~~~~~i~l~~~~e~~~~R~~~r~---~r~~~~~~~~~i~~~~~~~-------~ 134 (168)
T 2pt5_A 69 KENVVISTGGGLGANEEAL-NFMK---SRGTTVFIDIPFEVFLERCKDSK---ERPLLKRPLDEIKNLFEER-------R 134 (168)
T ss_dssp SSSEEEECCHHHHTCHHHH-HHHH---TTSEEEEEECCHHHHHHHCBCTT---CCBGGGSCGGGTHHHHHHH-------H
T ss_pred cCCeEEECCCCEeCCHHHH-HHHH---cCCEEEEEECCHHHHHHHHhCCC---CCCCCcchHHHHHHHHHHH-------H
Confidence 4578886 4 33333333 2222 36899999999999999994 32 2321 22333333321 2
Q ss_pred HHhhhCCcEEEEeCCCChHHHHHHHHHHHHH
Q psy11031 129 DFFDQRGMLIAVNGERNPVEVYADFRTAVLK 159 (520)
Q Consensus 129 ~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l~~ 159 (520)
.+|.+ .-++. |++.+++++.++|.+.+..
T Consensus 135 ~~~~~-~~~~i-~~~~~~~~~~~~i~~~l~~ 163 (168)
T 2pt5_A 135 KIYSK-ADIKV-KGEKPPEEVVKEILLSLEG 163 (168)
T ss_dssp HHHTT-SSEEE-ECSSCHHHHHHHHHHHHHT
T ss_pred HHHHh-CCEEE-CCCCCHHHHHHHHHHHHHh
Confidence 34654 33444 8889999999999988863
No 251
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.65 E-value=0.019 Score=56.66 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
.+..++|.|+||+|||++|+.+++.+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 35569999999999999999888764
No 252
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.65 E-value=0.017 Score=51.61 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
....++|+|++||||||+++.|+..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999998753
No 253
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.63 E-value=0.23 Score=45.24 Aligned_cols=131 Identities=6% Similarity=0.079 Sum_probs=74.3
Q ss_pred ccCcccCcHHHHHHHH-HHc--cCCCCC-CC---CHHHHHHHHHHHHhcCCCCCcEEEeCCCCCHHhHHHHHHhcCCcCE
Q psy11031 12 LDFPSHRNPLKMFNLF-VSE--EVKDFS-FL---SSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKTING 84 (520)
Q Consensus 12 ~~~~~h~s~G~~l~~~-i~~--G~~~g~-lV---Pdelv~~ll~~~l~~~~~~~G~ILDGFPRt~~QA~~~~~~~~~pd~ 84 (520)
++++ +++++..++.. +.. +...+. .+ +++.+.+.+...+. ...|+|+|+..+.. |.. ..++.
T Consensus 35 ~g~~-~id~d~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~~~---~~g~~vi~~~~~~~-----~~~--~~~~~ 103 (184)
T 1y63_A 35 DGFQ-HLEVGKLVKENHFYTEYDTELDTHIIEEKDEDRLLDFMEPIMV---SRGNHVVDYHSSEL-----FPE--RWFHM 103 (184)
T ss_dssp TTEE-EEEHHHHHHHTTCSCC------CCCCCHHHHHHHHHHHHHHHT---SSSEEEEECSCCTT-----SCG--GGCSE
T ss_pred CCCE-EeeHHHHHHHhhhhhhHHHHhhhcccCCCCHHHHHHHHHHHHh---ccCCEEEeCchHhh-----hhh--ccCCE
Confidence 5667 88888887762 000 111111 34 45555565555442 24689999875421 111 13689
Q ss_pred EEEEEcCHHHHHHHhh-hCccCCccchHHHHHHHH-H-HHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHHHHHH
Q psy11031 85 VILIAWRQSLLERQID-YGAKLGHVILSLARMELA-N-FYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLKI 160 (520)
Q Consensus 85 VI~L~~pd~~l~~Rl~-rg~~~~r~d~e~i~~Rl~-~-Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~l~~~ 160 (520)
||+|+||.+++.+|+. |+.. | ..+..++. . +..-...-...|.. ..++.+| +.+++++..++.+++..+
T Consensus 104 vi~l~~~~e~~~~Rl~~R~~~--~---~~~~~~~~~q~~~~l~~~~~~~y~~-~~vi~~n-~~~~~~~~~~v~~i~~~l 175 (184)
T 1y63_A 104 VVVLHTSTEVLFERLTKRQYS--E---AKRAENMEAEIQCICEEEARDAYED-DIVLVRE-NDTLEQMAATVEEIRERV 175 (184)
T ss_dssp EEEEECCHHHHHHHHHHTTCC--H---HHHHHHHHHHHTTHHHHHHHHHSCG-GGEEEEE-CSSHHHHHHHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHhCCCC--h---hhhHhhHHHHHHHHHHHHHHHHhcc-CcEEECC-CCCHHHHHHHHHHHHHHH
Confidence 9999999999999994 4311 1 22233332 2 22223344566763 3455556 468999977777766544
No 254
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.63 E-value=0.018 Score=61.59 Aligned_cols=37 Identities=27% Similarity=0.402 Sum_probs=28.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCee--eehhhHHh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQ--ISLGKLLR 262 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~--is~gdLlr 262 (520)
|+-|+|.||||+||||+|+.|+... +.+. ++..++..
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~-~~~f~~is~~~~~~ 87 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEA-NVPFFHISGSDFVE 87 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHH-TCCEEEEEGGGTTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc-CCCeeeCCHHHHHH
Confidence 4559999999999999999999886 6554 45555554
No 255
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.60 E-value=0.017 Score=54.14 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
...++.|+|++||||||+++.|+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
No 256
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.57 E-value=0.025 Score=51.12 Aligned_cols=28 Identities=18% Similarity=0.361 Sum_probs=24.3
Q ss_pred CCCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 221 ERNTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 221 ~~~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
+.....+|+|+|.+|+||||+..+|...
T Consensus 3 ~~~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 3 EKKSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CCCSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhC
Confidence 3455788999999999999999999875
No 257
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.54 E-value=0.017 Score=53.23 Aligned_cols=24 Identities=29% Similarity=0.180 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
.++|.|.|++||||||++.+|+..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999875
No 258
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.52 E-value=0.019 Score=52.72 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHHhhC
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
.++|.|+||+|||++++.+++.+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 39999999999999999998763
No 259
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.51 E-value=0.022 Score=55.12 Aligned_cols=35 Identities=14% Similarity=0.251 Sum_probs=27.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCC----CCeeeehhhH
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYP----NWTQISLGKL 260 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~----g~~~is~gdL 260 (520)
.-|+|.|+||+|||++|+.|++... .+..+++..+
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~ 68 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL 68 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCC
Confidence 3489999999999999999998641 2556666544
No 260
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=94.46 E-value=0.02 Score=60.64 Aligned_cols=37 Identities=16% Similarity=0.352 Sum_probs=29.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCC----CeeeehhhHHh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPN----WTQISLGKLLR 262 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g----~~~is~gdLlr 262 (520)
+.-+++.||||+|||++|+.|++.+ + +..++..++..
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l-~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQEL-GSKVPFCPMVGSEVYS 103 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHH-CTTSCEEEEEGGGGCC
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHh-CCCceEEEEeHHHHHH
Confidence 4569999999999999999999986 6 34455555544
No 261
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.42 E-value=0.023 Score=52.85 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQ 247 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~ 247 (520)
...+++|.|+|||||||+|..|+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999985
No 262
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.40 E-value=0.023 Score=55.95 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
..++|.|+||+||||+|+.|++..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 369999999999999999999864
No 263
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.37 E-value=0.031 Score=59.04 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=27.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCC--CeeeehhhHHh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPN--WTQISLGKLLR 262 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g--~~~is~gdLlr 262 (520)
.+.-|+|.||||+|||++|+.|+....+ +..+++.+++.
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~ 206 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 206 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC----
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHh
Confidence 4567999999999999999999987523 34456656654
No 264
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.34 E-value=0.079 Score=48.03 Aligned_cols=69 Identities=12% Similarity=0.106 Sum_probs=44.5
Q ss_pred cCEEEEEEcCHHHHHHHhh-hCc-cC-CccchHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCC-CChHHHHHHHHHHH
Q psy11031 82 INGVILIAWRQSLLERQID-YGA-KL-GHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGE-RNPVEVYADFRTAV 157 (520)
Q Consensus 82 pd~VI~L~~pd~~l~~Rl~-rg~-~~-~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~-~~~eeV~~~i~~~l 157 (520)
.+.+|+|+||.+++.+|+. |+. .. ...+ ...++..+..... .+|.... .+.||++ .+++++.++|.+.+
T Consensus 94 ~~~vV~L~~~~e~~~~Rl~~r~~r~~~~~~~---~~~~i~~~~~~r~---~~~~~~~-~~~Idt~~~s~ee~~~~I~~~l 166 (184)
T 2iyv_A 94 GHTVVYLEISAAEGVRRTGGNTVRPLLAGPD---RAEKYRALMAKRA---PLYRRVA-TMRVDTNRRNPGAVVRHILSRL 166 (184)
T ss_dssp TSCEEEEECCHHHHHHHTTCCCCCSSTTSCC---HHHHHHHHHHHHH---HHHHHHC-SEEEECSSSCHHHHHHHHHTTS
T ss_pred CCeEEEEeCCHHHHHHHHhCCCCCCCccCCC---HHHHHHHHHHHHH---HHHhccC-CEEEECCCCCHHHHHHHHHHHH
Confidence 5689999999999999994 321 10 1111 2234555544333 3554432 3679998 89999999987765
No 265
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.26 E-value=0.022 Score=53.16 Aligned_cols=25 Identities=16% Similarity=0.396 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
...+++|+|++||||||++..|+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999843
No 266
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.25 E-value=0.02 Score=54.62 Aligned_cols=24 Identities=13% Similarity=0.061 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
..+++.||||+||||.|..|++.+
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 459999999999999999999875
No 267
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=94.22 E-value=0.61 Score=46.45 Aligned_cols=156 Identities=9% Similarity=0.140 Sum_probs=82.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCc---------chHHHHhhhhcCCccchH----
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEG---------LNSRIKSSVSAGDFVNRD---- 291 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~---------~g~~i~~~l~~G~~vPd~---- 291 (520)
..-|+|+|| ||+|++++|.++++.....|+..-.| . ...+.. .-+.++..+.+|..+--.
T Consensus 100 ~RpvVl~Gp---~K~tl~~~Ll~~~p~~f~~sVs~TTR---~-pR~gE~dG~dY~Fv~s~e~fe~~i~~~~flE~a~~~g 172 (292)
T 3tvt_A 100 TRPVIILGP---LKDRINDDLISEYPDKFGSCVPHTTR---P-KREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYND 172 (292)
T ss_dssp CCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECS---C-CCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETT
T ss_pred CCeEEEeCC---CHHHHHHHHHHhChhhccccccCCcc---C-CcCCccCCccccccCCHHHHHHHHhcCceEEEEEEcc
Confidence 344777787 59999999999986655566554444 1 111111 113455555555433210
Q ss_pred ----HHHHHHHHHHhccccCCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChh-hh---hccCCCCCHHHHHHHH
Q psy11031 292 ----VVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKL-VL---HKGQIDNSVSAFRRRL 363 (520)
Q Consensus 292 ----lv~~ll~~~l~~~~~~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~-~~---~r~R~dD~~e~~~~Rl 363 (520)
+-.+-+.+.+. .++.+|||-=+.. +..+.... ..+.+|||..|.. .+ .++|.+++.+.+..|+
T Consensus 173 n~YGT~~~~V~~~~~-----~gk~viLdid~qg---~~~lk~~~-~~pi~IFI~PpS~e~L~~r~~~r~~e~~~~~~~r~ 243 (292)
T 3tvt_A 173 NLYGTSVASVREVAE-----KGKHCILDVSGNA---IKRLQVAQ-LYPVAVFIKPKSVDSVMEMNRRMTEEQAKKTYERA 243 (292)
T ss_dssp EEEEEEHHHHHHHHH-----HTCEEEECCCTHH---HHHHHHTT-CCCEEEEECCSCHHHHHHTCTTSCTTHHHHHHHHH
T ss_pred ceeEEehHHHHHHHH-----cCCcEEEeccchh---hhhccccc-ccceEEEEECCCHHHHHHHHhCCCchhHHHHHHHH
Confidence 01222333333 3678999875444 44444332 3456888887643 22 2345555555555555
Q ss_pred HHHHHHhHHHHHHhhhCCCEEEEECCCCHHHHHHHHHHHHHH
Q psy11031 364 ELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK 405 (520)
Q Consensus 364 ~~f~~~~~~l~~~y~~~~~l~~IDa~~~~e~V~~~I~~~I~~ 405 (520)
.... .....+|+ .+ |. +.+.++.+++|.++|..
T Consensus 244 ~k~e---~e~~~~fD----~v-Iv-Nddle~a~~~l~~iI~~ 276 (292)
T 3tvt_A 244 IKME---QEFGEYFT----GV-VQ-GDTIEEIYSKVKSMIWS 276 (292)
T ss_dssp HHHH---HHHTTTCS----EE-EC-CSSHHHHHHHHHHHHHH
T ss_pred HHHH---HhhhhhCC----EE-EE-CcCHHHHHHHHHHHHHH
Confidence 4322 12222332 23 32 45778888887777655
No 268
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.19 E-value=0.022 Score=57.29 Aligned_cols=27 Identities=33% Similarity=0.678 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
..+.+|+|+|++||||||.+.+|+..+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 346789999999999999999998754
No 269
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.14 E-value=0.019 Score=53.31 Aligned_cols=94 Identities=10% Similarity=0.071 Sum_probs=57.6
Q ss_pred CCcEEEeCCCCCH--HhH-----------HHHHHh------c-CCcCEEEEEEcCHHHHHHHhh-hCcc-CCcc-c----
Q psy11031 57 AKAFLISGYPRNM--RDV-----------VEYSDK------I-KTINGVILIAWRQSLLERQID-YGAK-LGHV-I---- 109 (520)
Q Consensus 57 ~~G~ILDGFPRt~--~QA-----------~~~~~~------~-~~pd~VI~L~~pd~~l~~Rl~-rg~~-~~r~-d---- 109 (520)
...+|+|||+.+. .|+ ..+... . ..||.+|+|++|.+++.+|+. |+.. .+|. +
T Consensus 88 g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~d~~e~ 167 (214)
T 1gtv_A 88 YDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRDPGRARDNYER 167 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEEHHHHHHHHHHHHHEBBEEEEEEEEE
T ss_pred CCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCCHHHHHHHHHcccccccccccccccc
Confidence 3568999999763 232 122222 1 269999999999999999984 4321 1111 1
Q ss_pred hHHHHHHHHH-HHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHH
Q psy11031 110 LSLARMELAN-FYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRT 155 (520)
Q Consensus 110 ~e~i~~Rl~~-Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~ 155 (520)
.+.+.+|+.. |.+. .+.|. ...++.||+++++++|+++|.+
T Consensus 168 ~~~~~~~~~~~~~~~----~~~~~-~~~~~vId~~~~~~~v~~~i~~ 209 (214)
T 1gtv_A 168 DAELQQRTGAVYAEL----AAQGW-GGRWLVVGADVDPGRLAATLAP 209 (214)
T ss_dssp EHHHHHHHHHHHHHH----HHEEE-EEEEEEEEEEEBHHHHHHHHC-
T ss_pred cHHHHHHHHHHHHHH----HHhCC-CCCEEEEeCCCCHHHHHHHhcC
Confidence 1345555543 4331 23332 1347889999999999998854
No 270
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.11 E-value=0.066 Score=49.99 Aligned_cols=94 Identities=10% Similarity=0.112 Sum_probs=58.7
Q ss_pred CCcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHh-hhCccCCc-cchHHHHHHHHH--HHhccchHHHHhh
Q psy11031 57 AKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQI-DYGAKLGH-VILSLARMELAN--FYQNVTPVTDFFD 132 (520)
Q Consensus 57 ~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl-~rg~~~~r-~d~e~i~~Rl~~--Y~~~t~pvi~~Y~ 132 (520)
..|+|+|| |+.... .....+.+|+|+||.+++.+|+ .+...-++ .+.+.+.+++.. |......+..+|.
T Consensus 118 ~~~~vi~g--~~~~~~-----~~~~~~~vi~l~a~~e~~~~R~~~~~~~r~~~~~~e~~~~~~~~r~~~d~~r~~~~~~~ 190 (219)
T 2h92_A 118 EKGIVMDG--RDIGTV-----VLPDADLKVYMIASVEERAERRYKDNQLRGIESNFEDLKRDIEARDQYDMNREISPLRK 190 (219)
T ss_dssp TCCEEEEE--SSCCCC-----CCTTCSEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHCSSSCSCC
T ss_pred CCcEEEEc--CCccce-----ecCCCCEEEEEECCHHHHHHHHHHHHHhcCcccCHHHHHHHHHHHHHhhhhhhcccccc
Confidence 46899999 333211 1234689999999999999886 21100022 145556666642 3333333444554
Q ss_pred hCCcEEEEeCC-CChHHHHHHHHHHHH
Q psy11031 133 QRGMLIAVNGE-RNPVEVYADFRTAVL 158 (520)
Q Consensus 133 ~~~~l~~Ida~-~~~eeV~~~i~~~l~ 158 (520)
... .+.||.+ .+++++.++|.+.+.
T Consensus 191 ~~d-~~~Id~~~~~~ee~~~~I~~~l~ 216 (219)
T 2h92_A 191 ADD-AVTLDTTGKSIEEVTDEILAMVS 216 (219)
T ss_dssp CTT-CEEEECTTCCHHHHHHHHHHHHH
T ss_pred CCC-eEEEECCCCCHHHHHHHHHHHHh
Confidence 422 4678887 599999999998875
No 271
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.10 E-value=0.026 Score=57.33 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
..+.+|.|+|+.||||||++++|+..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999998643
No 272
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.09 E-value=0.029 Score=48.89 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
++|+|+|.+|+||||++.++....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999998753
No 273
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.05 E-value=0.037 Score=58.57 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=26.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeeh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISL 257 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~ 257 (520)
.+.++|.||||+||||+|+.|++.. +...+.+
T Consensus 50 ~~~vLL~GppGtGKTtlAr~ia~~~-~~~f~~l 81 (447)
T 3pvs_A 50 LHSMILWGPPGTGKTTLAEVIARYA-NADVERI 81 (447)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHT-TCEEEEE
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHh-CCCeEEE
Confidence 3679999999999999999999986 7665543
No 274
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.04 E-value=0.19 Score=46.23 Aligned_cols=87 Identities=8% Similarity=0.069 Sum_probs=58.6
Q ss_pred CcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHhh-hCccCCccchHHHHHHHHHHHhccchHHHHhhhCCc
Q psy11031 58 KAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQID-YGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGM 136 (520)
Q Consensus 58 ~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~ 136 (520)
..+|+||- -..+ . .+. ..++.+|+|+||.+++.+|+. |+ . +.+.+.+|+... .+...++....
T Consensus 106 ~~vive~~-~l~~-~-~~~---~~~~~~i~l~~~~e~~~~Rl~~R~----~-~~~~~~~~~~~~----~~~~~~~~~ad- 169 (204)
T 2if2_A 106 TLFILEAS-LLVE-K-GTY---KNYDKLIVVYAPYEVCKERAIKRG----M-SEEDFERRWKKQ----MPIEEKVKYAD- 169 (204)
T ss_dssp CCEEEECS-CSTT-T-TCG---GGSSEEEEECCCHHHHHHHHHHTC----C-CHHHHHHHHTTS----CCHHHHGGGCS-
T ss_pred CEEEEEcc-cccc-C-Cch---hhCCEEEEEECCHHHHHHHHHHcC----C-CHHHHHHHHHhC----CChhHHHhcCC-
Confidence 67899984 2111 1 111 137899999999999999994 42 1 334555666543 34455555443
Q ss_pred EEEEeCCCChHHHHHHHHHHHHHHh
Q psy11031 137 LIAVNGERNPVEVYADFRTAVLKIL 161 (520)
Q Consensus 137 l~~Ida~~~~eeV~~~i~~~l~~~~ 161 (520)
+.||++.++++++++|.+.+....
T Consensus 170 -~vId~~~~~~~~~~~i~~~l~~~~ 193 (204)
T 2if2_A 170 -YVIDNSGSIEETYKQVKKVYEELT 193 (204)
T ss_dssp -EECCCSSCHHHHHHHHHHHHHTTC
T ss_pred -EEEECCCCHHHHHHHHHHHHHHHh
Confidence 468999999999999999887544
No 275
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=93.95 E-value=0.037 Score=59.48 Aligned_cols=36 Identities=25% Similarity=0.360 Sum_probs=27.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCC--eeeehhhHH
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNW--TQISLGKLL 261 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~--~~is~gdLl 261 (520)
|+-++|+||||+||||+|+.|+... +. ..++..++.
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~~-~~~~i~i~g~~~~ 101 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGEA-RVPFITASGSDFV 101 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHT-TCCEEEEEGGGGT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh-CCCEEEEehhHHH
Confidence 4449999999999999999999875 54 444554443
No 276
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.95 E-value=0.029 Score=56.34 Aligned_cols=26 Identities=35% Similarity=0.353 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
.+.+|.|+|+.||||||+++.|+..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 56799999999999999999998653
No 277
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.92 E-value=0.022 Score=53.22 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHHHhhC
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
++.|+|++||||||+++.|+..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 58999999999999999998754
No 278
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=93.92 E-value=0.041 Score=58.97 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=31.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCee--eehhhHHh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQ--ISLGKLLR 262 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~--is~gdLlr 262 (520)
..+.-|+|.|+||+|||++|+.|+... +... +++.++..
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~-~~~fv~vn~~~l~~ 276 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANET-GAFFFLINGPEIMS 276 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHC-SSEEEEEEHHHHHT
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHh-CCCEEEEEchHhhh
Confidence 446679999999999999999999986 7554 46666654
No 279
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=93.90 E-value=0.031 Score=60.61 Aligned_cols=35 Identities=23% Similarity=0.481 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhCCCCe--eeehhh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWT--QISLGK 259 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~~g~~--~is~gd 259 (520)
.+..++|+||||+||||+|+.|+... +.. .++++.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l-~~~~~~i~~~~ 143 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL-GRKFVRISLGG 143 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH-TCEEEEECCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc-CCCeEEEEecc
Confidence 46789999999999999999999875 544 344433
No 280
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.87 E-value=0.031 Score=63.47 Aligned_cols=39 Identities=23% Similarity=0.339 Sum_probs=32.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeeh--hhHHh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISL--GKLLR 262 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~--gdLlr 262 (520)
..|+-|++.||||+|||.+|+.||... ++..+++ .+|+.
T Consensus 509 ~~~~gvLl~GPPGtGKT~lAkaiA~e~-~~~f~~v~~~~l~s 549 (806)
T 3cf2_A 509 TPSKGVLFYGPPGCGKTLLAKAIANEC-QANFISIKGPELLT 549 (806)
T ss_dssp CCCSCCEEESSTTSSHHHHHHHHHHTT-TCEEEECCHHHHHT
T ss_pred CCCceEEEecCCCCCchHHHHHHHHHh-CCceEEeccchhhc
Confidence 446679999999999999999999997 8877654 47766
No 281
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.84 E-value=0.042 Score=55.69 Aligned_cols=26 Identities=12% Similarity=0.277 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
..+..++|.|+||+||||+++.+++.
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 34668999999999999999999874
No 282
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=93.82 E-value=0.025 Score=56.70 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=23.5
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCee
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQ 254 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~ 254 (520)
-++|.|+||+|||++|+.|++.+ +...
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~-~~~~ 74 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTM-DLDF 74 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHT-TCCE
T ss_pred eEEEECCCCCcHHHHHHHHHHHh-CCCe
Confidence 39999999999999999999986 6543
No 283
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.81 E-value=0.041 Score=49.78 Aligned_cols=27 Identities=22% Similarity=0.498 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
....++.|+|+.||||||+.+.|+..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 346789999999999999999999865
No 284
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.81 E-value=0.038 Score=49.35 Aligned_cols=28 Identities=11% Similarity=0.057 Sum_probs=22.6
Q ss_pred CCCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 221 ERNTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 221 ~~~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
......+|+|+|.+|+||||+..++...
T Consensus 4 ~~~~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 4 SASRFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3455678999999999999999999865
No 285
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.80 E-value=0.034 Score=55.99 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=24.3
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
-+...++.|+||+||||||+++.|+.-+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3456789999999999999999999765
No 286
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.78 E-value=0.03 Score=49.95 Aligned_cols=27 Identities=26% Similarity=0.318 Sum_probs=23.4
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
.....+|+|+|.+|+||||+..++...
T Consensus 4 ~~~~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 4 SIPELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp CCCEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhC
Confidence 345678999999999999999999875
No 287
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.78 E-value=0.035 Score=48.65 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
...+|+|+|.+||||||++.+|...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 4568999999999999999999865
No 288
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.77 E-value=0.03 Score=52.84 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
...++.|+|+|||||||+|..|+..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4568999999999999999999874
No 289
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.75 E-value=0.036 Score=55.80 Aligned_cols=26 Identities=23% Similarity=0.456 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
..+..++|.|++|+||||+++.+++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 44668999999999999999999874
No 290
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.74 E-value=0.035 Score=49.33 Aligned_cols=26 Identities=23% Similarity=0.480 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....+|+|+|.+||||||++.++...
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 34678999999999999999998764
No 291
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.73 E-value=0.031 Score=56.10 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
..+.++.|+|+.||||||+++.|+..+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 346799999999999999999998753
No 292
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.72 E-value=0.041 Score=54.78 Aligned_cols=34 Identities=18% Similarity=0.363 Sum_probs=26.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCCeeeeh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISL 257 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~ 257 (520)
..|..+++.|+||+|||++++.+++.+ +...+.+
T Consensus 46 ~~~~~~L~~G~~G~GKT~la~~la~~l-~~~~~~i 79 (324)
T 3u61_B 46 KIPHIILHSPSPGTGKTTVAKALCHDV-NADMMFV 79 (324)
T ss_dssp CCCSEEEECSSTTSSHHHHHHHHHHHT-TEEEEEE
T ss_pred CCCeEEEeeCcCCCCHHHHHHHHHHHh-CCCEEEE
Confidence 344566777779999999999999987 7665544
No 293
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.69 E-value=0.039 Score=62.70 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=30.4
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhCCCCeee--ehhhHH
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI--SLGKLL 261 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~~g~~~i--s~gdLl 261 (520)
...+..|+|+|+|||||||+|+.|+..+ +...+ +..++.
T Consensus 235 i~~~~~vLL~Gp~GtGKTtLarala~~l-~~~~i~v~~~~l~ 275 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLIARAVANET-GAFFFLINGPEIM 275 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHHHHHHHHTT-TCEEEEEEHHHHS
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHHc-CCcEEEEEchHhh
Confidence 3556789999999999999999999986 76554 443443
No 294
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.64 E-value=0.052 Score=48.21 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
.++.+|+|+|.+|+||||+..+|...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45788999999999999999999864
No 295
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.61 E-value=0.035 Score=56.13 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
+..++|.||||+|||++|+.+++..
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999875
No 296
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.60 E-value=0.11 Score=47.28 Aligned_cols=93 Identities=12% Similarity=0.013 Sum_probs=54.6
Q ss_pred cEEEeCCCCCHHh---HHHHHHhcCCcCEEEEEEcCHHHHHHHhhhCccCCccchHHHHHHHH-HHHhccchHHHHhhh-
Q psy11031 59 AFLISGYPRNMRD---VVEYSDKIKTINGVILIAWRQSLLERQIDYGAKLGHVILSLARMELA-NFYQNVTPVTDFFDQ- 133 (520)
Q Consensus 59 G~ILDGFPRt~~Q---A~~~~~~~~~pd~VI~L~~pd~~l~~Rl~rg~~~~r~d~e~i~~Rl~-~Y~~~t~pvi~~Y~~- 133 (520)
-+|+||+...... ...+......++.+|+|+||.+++.+|+.++.. .|.. ...+....+.+.|..
T Consensus 87 ~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~~~~----------~~~~~~~~~~~~~~~~~y~~~ 156 (186)
T 2yvu_A 87 IVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPKGLY----------KKALKGELENFTGITDPYEPP 156 (186)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHHHHH----------HHHHTTCCSSCHHHHSCCCCC
T ss_pred EEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhhhhh----------hHHhhcchhhhhhhhhcccCC
Confidence 3466886644322 222333334689999999999999999843210 0100 000111112233432
Q ss_pred CCcEEEEeCC-CChHHHHHHHHHHHHHHh
Q psy11031 134 RGMLIAVNGE-RNPVEVYADFRTAVLKIL 161 (520)
Q Consensus 134 ~~~l~~Ida~-~~~eeV~~~i~~~l~~~~ 161 (520)
..-.+.||++ ++++++.+.|.+.+...+
T Consensus 157 ~~~~~~Id~~~~~~~ev~~~I~~~l~~~~ 185 (186)
T 2yvu_A 157 ENPQLVLDTESNTIEHNVSYLYSLVKAVI 185 (186)
T ss_dssp SSCSEEEETTTSCHHHHHHHHHHHHHHHC
T ss_pred CCCcEEEECCCCCHHHHHHHHHHHHHHhc
Confidence 1224789998 899999999999987654
No 297
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.60 E-value=0.042 Score=50.63 Aligned_cols=24 Identities=13% Similarity=0.216 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
.+++.|.|++||||||+++.|...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 468999999999999999999875
No 298
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.60 E-value=0.044 Score=48.65 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....+|+|+|.+|+||||+..+|...
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34578999999999999999999865
No 299
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.58 E-value=0.045 Score=57.71 Aligned_cols=38 Identities=21% Similarity=0.227 Sum_probs=28.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhC------CCCeeeehhhHHh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDY------PNWTQISLGKLLR 262 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~------~g~~~is~gdLlr 262 (520)
+.-++|.|+||+||||+++.|+... ..+.++++.++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~ 173 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN 173 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH
Confidence 5679999999999999999998742 1345667666544
No 300
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.56 E-value=0.028 Score=55.68 Aligned_cols=29 Identities=14% Similarity=0.269 Sum_probs=24.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCee
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQ 254 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~ 254 (520)
+..++|.|+||+|||++|+.+++.. +...
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~-~~~~ 66 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHEL-GVNL 66 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHH-TCCE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHh-CCCE
Confidence 4568999999999999999999876 6544
No 301
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.52 E-value=0.038 Score=54.20 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
....++.|+||.||||||+.+.|+..+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 346789999999999999999998754
No 302
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.52 E-value=0.031 Score=50.06 Aligned_cols=25 Identities=12% Similarity=0.185 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
+..+|+|+|.+|+||||++.++...
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 4678999999999999999999853
No 303
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.50 E-value=0.34 Score=44.38 Aligned_cols=83 Identities=7% Similarity=-0.066 Sum_probs=53.6
Q ss_pred CcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHh-hhCccCCccchHHHHHHHH----HHHhccchHHHHhh
Q psy11031 58 KAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQI-DYGAKLGHVILSLARMELA----NFYQNVTPVTDFFD 132 (520)
Q Consensus 58 ~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl-~rg~~~~r~d~e~i~~Rl~----~Y~~~t~pvi~~Y~ 132 (520)
.++|+||.-.. . .....++.+|+|+||.+++.+|+ .+.. .+.+.+.+++. .|.... .
T Consensus 119 ~~~vi~g~~~~--~-----~~~~~~d~~i~l~a~~e~~~~R~~~r~~----~~~~~~~~~~~~R~~~~~~~~-------~ 180 (208)
T 3ake_A 119 PPFVAEGRDMG--T-----AVFPEAAHKFYLTASPEVRAWRRARERP----QAYEEVLRDLLRRDERDKAQS-------A 180 (208)
T ss_dssp SCEEEEESSCC--C-----CCCTTCSEEEEEECCHHHHHHHHHHTSS----SCHHHHHHHHHHHHHTC--CC-------C
T ss_pred CCEEEEcccee--E-----EEecCCcEEEEEECCHHHHHHHHHhhcc----cCHHHHHHHHHHHHHHHhhcc-------c
Confidence 79999998543 1 01124789999999999999998 3422 23334444444 332221 2
Q ss_pred hCCcEEEEeCCC-ChHHHHHHHHHHHH
Q psy11031 133 QRGMLIAVNGER-NPVEVYADFRTAVL 158 (520)
Q Consensus 133 ~~~~l~~Ida~~-~~eeV~~~i~~~l~ 158 (520)
...-.+.||.+. +++++.++|.+.+.
T Consensus 181 ~~ad~~~Id~~~~~~ee~~~~I~~~~~ 207 (208)
T 3ake_A 181 PAPDALVLDTGGMTLDEVVAWVLAHIR 207 (208)
T ss_dssp CCTTCEEEETTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHh
Confidence 222247899995 99999999988764
No 304
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.49 E-value=0.048 Score=49.43 Aligned_cols=27 Identities=11% Similarity=0.154 Sum_probs=23.5
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
.....+|+|+|.+|+||||+..+|...
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345788999999999999999999864
No 305
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.47 E-value=0.052 Score=50.37 Aligned_cols=33 Identities=15% Similarity=0.209 Sum_probs=27.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGK 259 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gd 259 (520)
..-|+|.|++|+||||+|..|.++ |+..++-+.
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r--G~~lvaDD~ 48 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR--GHQLVCDDV 48 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT--TCEEEESSE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc--CCeEecCCE
Confidence 456999999999999999999974 888777653
No 306
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.45 E-value=0.037 Score=51.24 Aligned_cols=24 Identities=13% Similarity=-0.009 Sum_probs=20.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
..++++.|+|||||||.+.+++..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999766654
No 307
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=93.40 E-value=0.03 Score=56.70 Aligned_cols=28 Identities=11% Similarity=0.319 Sum_probs=24.5
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
...|+.++|.||||+|||++++.+++.+
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3467889999999999999999998864
No 308
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.39 E-value=0.044 Score=47.59 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHhh
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k 248 (520)
.+|+|+|.+||||||++..+...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999999865
No 309
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.37 E-value=0.042 Score=52.93 Aligned_cols=27 Identities=26% Similarity=0.155 Sum_probs=23.0
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
-....++.|+||.||||||+.+.|+.-
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 345678999999999999999998743
No 310
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.37 E-value=0.044 Score=54.03 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....+++|+|+|||||||++..|+..
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 34678999999999999999988764
No 311
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.35 E-value=0.046 Score=47.61 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
..+|+|+|.+|+||||+..++...
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 467999999999999999998864
No 312
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.33 E-value=0.047 Score=47.63 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
..+|+|+|.+||||||++.+|...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 468999999999999999999865
No 313
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.33 E-value=0.052 Score=49.19 Aligned_cols=27 Identities=15% Similarity=0.190 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
....+|+|+|++||||||+...|....
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 346789999999999999999998753
No 314
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.33 E-value=0.043 Score=50.28 Aligned_cols=26 Identities=19% Similarity=0.325 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
...+|+|+|++||||||+.++|+...
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998753
No 315
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.30 E-value=0.047 Score=50.12 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
..+|+|+|++||||||+.++|+..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 467999999999999999999875
No 316
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.29 E-value=0.052 Score=50.37 Aligned_cols=27 Identities=15% Similarity=0.190 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
...++|+|+|++||||||++.+|....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456789999999999999999998764
No 317
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.29 E-value=0.057 Score=47.96 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
+..+|+|+|.+|+||||++.+|...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 4578999999999999999999864
No 318
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.28 E-value=0.04 Score=52.02 Aligned_cols=24 Identities=38% Similarity=0.577 Sum_probs=20.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQ 247 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~ 247 (520)
....++|.|+|||||||+|..++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999988764
No 319
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.28 E-value=0.041 Score=55.49 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
..+..++|.|+||+||||+++.+++.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 44667999999999999999999875
No 320
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.28 E-value=0.04 Score=55.09 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
.+.+|.|+|++||||||++..|+..+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998643
No 321
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.25 E-value=0.053 Score=48.80 Aligned_cols=25 Identities=16% Similarity=0.360 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
+..+|+|+|++|+||||+..+|+..
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999864
No 322
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.21 E-value=0.27 Score=48.38 Aligned_cols=89 Identities=10% Similarity=0.070 Sum_probs=61.3
Q ss_pred CCcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHh-hhCccCCccchHHHHHHHHHHHhccchHHHHhhhCC
Q psy11031 57 AKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQI-DYGAKLGHVILSLARMELANFYQNVTPVTDFFDQRG 135 (520)
Q Consensus 57 ~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl-~rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~ 135 (520)
...+|+||.--. +. .|. ..+|.+|+|+||.+++.+|+ .|. ++ +.+.+.+|+... .+..+++....
T Consensus 181 ~~~vIveg~~l~--~~-~~~---~~~d~vI~l~a~~ev~~~Rl~~R~---g~-s~e~~~~ri~~q----~~~~~~~~~AD 246 (281)
T 2f6r_A 181 KTLCVIDAAMLL--EA-GWQ---SMVHEVWTVVIPETEAVRRIVERD---GL-SEAAAQSRLQSQ----MSGQQLVEQSN 246 (281)
T ss_dssp CCEEEEECTTTT--TT-TGG---GGCSEEEEEECCHHHHHHHHHHHH---CC-CHHHHHHHHHTS----CCHHHHHHTCS
T ss_pred CCEEEEEechhh--cc-chH---HhCCEEEEEcCCHHHHHHHHHHcC---CC-CHHHHHHHHHHc----CChHhhHhhCC
Confidence 457999996321 11 111 24789999999999999998 442 22 345566666554 34455554433
Q ss_pred cEEEEeCCCChHHHHHHHHHHHHHHh
Q psy11031 136 MLIAVNGERNPVEVYADFRTAVLKIL 161 (520)
Q Consensus 136 ~l~~Ida~~~~eeV~~~i~~~l~~~~ 161 (520)
+.||.+.++++++++|.+++..++
T Consensus 247 --~vIdn~~s~eel~~~I~~~l~~l~ 270 (281)
T 2f6r_A 247 --VVLSTLWESHVTQSQVEKAWNLLQ 270 (281)
T ss_dssp --EEEECSSCHHHHHHHHHHHHHHHH
T ss_pred --EEEECCCCHHHHHHHHHHHHHHHH
Confidence 568999999999999999998765
No 323
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.20 E-value=0.06 Score=47.34 Aligned_cols=25 Identities=12% Similarity=0.300 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
+..+|+|+|.+|+||||+..++...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4678999999999999999999764
No 324
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.19 E-value=0.056 Score=48.39 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....+|+|+|.+|+||||++.+|...
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 44578999999999999999999865
No 325
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.15 E-value=0.05 Score=48.38 Aligned_cols=24 Identities=17% Similarity=0.374 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
..+|+|+|++|+||||+..+|+..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 367999999999999999999864
No 326
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.14 E-value=0.021 Score=52.51 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
+++.|+|+.||||||+++.|+..|
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998765
No 327
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.14 E-value=0.056 Score=49.31 Aligned_cols=29 Identities=17% Similarity=0.377 Sum_probs=22.9
Q ss_pred cCCCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 220 VERNTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 220 ~~~~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
|......+|+|+|.+|+||||+..+|...
T Consensus 23 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 23 MAKSAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp ----CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cCCCCceEEEEECCCCCCHHHHHHHHHhC
Confidence 33456788999999999999999999865
No 328
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.13 E-value=0.044 Score=51.88 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQ 247 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~ 247 (520)
..++.|+|+.||||||+.+.|+.
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46799999999999999999874
No 329
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.11 E-value=0.049 Score=52.54 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=23.0
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
-....++.|+|+.||||||+.+.|+.-
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 345678999999999999999998743
No 330
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.10 E-value=0.054 Score=50.45 Aligned_cols=25 Identities=20% Similarity=0.419 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
..++|+|+|.+||||||++.+|+..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999876
No 331
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.09 E-value=0.044 Score=56.40 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
..+.+|.|+|+.||||||++++|+..+
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 357899999999999999999998753
No 332
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.07 E-value=0.055 Score=49.57 Aligned_cols=28 Identities=11% Similarity=0.241 Sum_probs=22.3
Q ss_pred CCCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 221 ERNTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 221 ~~~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
......+|+|+|.+|+||||++.+|...
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3456789999999999999999999865
No 333
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.06 E-value=0.055 Score=47.83 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
..+|+|+|.+|+||||+..+|....
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEEECCCCccHHHHHHHHhcCC
Confidence 5689999999999999999998653
No 334
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.06 E-value=0.046 Score=52.21 Aligned_cols=26 Identities=23% Similarity=0.184 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....++.|+|+.||||||+.+.|+.-
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 44678999999999999999998753
No 335
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.05 E-value=0.049 Score=55.07 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
+.++|.|+||+||||+++.+++.+
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999998764
No 336
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.04 E-value=0.051 Score=48.13 Aligned_cols=27 Identities=15% Similarity=0.194 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
....+|+|+|.+|+||||++.+|....
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCC
Confidence 345789999999999999999998653
No 337
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.04 E-value=0.063 Score=48.34 Aligned_cols=26 Identities=19% Similarity=0.148 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
...++|+|+|.+||||||+..+|...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcC
Confidence 34578999999999999999999865
No 338
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.01 E-value=0.054 Score=47.54 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
..+|+|+|.+|+||||++.++...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 467999999999999999999864
No 339
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.00 E-value=0.053 Score=48.62 Aligned_cols=26 Identities=12% Similarity=0.219 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....+|+|+|.+|+||||++.+|...
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcC
Confidence 34578999999999999999999864
No 340
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.98 E-value=0.046 Score=48.51 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
...+|+|+|.+|+||||+..++...
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 3568999999999999999999864
No 341
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.98 E-value=0.058 Score=48.85 Aligned_cols=26 Identities=12% Similarity=0.256 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....+|+|+|.+|+||||+..+|...
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcC
Confidence 34578999999999999999999865
No 342
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.95 E-value=0.048 Score=54.51 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
+.++|.|+||+||||+++.+++.+
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 339999999999999999999874
No 343
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.92 E-value=0.056 Score=52.33 Aligned_cols=26 Identities=15% Similarity=0.104 Sum_probs=22.4
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
-.. .++.|+|+.||||||+.+.|+.-
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 345 78999999999999999999854
No 344
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.89 E-value=0.064 Score=50.13 Aligned_cols=25 Identities=20% Similarity=0.342 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
..++|+|+|.+||||||++.+++..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999876
No 345
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=92.89 E-value=0.037 Score=55.42 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=21.1
Q ss_pred EEEEcCCCCChhHHHHHHHhhC
Q psy11031 228 VWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 228 I~vlG~PGSGKsT~a~~La~k~ 249 (520)
++|.|+||+|||++|+.|++..
T Consensus 48 vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHS
T ss_pred EEEECCCCccHHHHHHHHHHhC
Confidence 9999999999999999999876
No 346
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.88 E-value=0.045 Score=56.02 Aligned_cols=28 Identities=32% Similarity=0.408 Sum_probs=24.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCCCCe
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWT 253 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~g~~ 253 (520)
..++.|+|++||||||+++.|+..+ ...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~-~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF-NTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT-TCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh-CCC
Confidence 5789999999999999999999886 443
No 347
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.87 E-value=0.048 Score=57.72 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
+|.+|++.|++||||||.|.+|+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 5789999999999999999999863
No 348
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.86 E-value=0.057 Score=52.19 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=23.8
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
-....++.|+|+.||||||+.+.|+.-+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3457789999999999999999997643
No 349
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.83 E-value=0.057 Score=49.56 Aligned_cols=28 Identities=11% Similarity=0.063 Sum_probs=23.3
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
.....+|+|+|.+|+||||++.+|....
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 4557889999999999999999998753
No 350
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.82 E-value=0.19 Score=44.84 Aligned_cols=122 Identities=8% Similarity=0.034 Sum_probs=64.3
Q ss_pred ccCcccCcHHHHHHHHHHccC-------CCCCCCCHHHHHHHHHHHHhcCCCCCcE-EEe---CCCCCHHhHHHHHHhcC
Q psy11031 12 LDFPSHRNPLKMFNLFVSEEV-------KDFSFLSSKTVTEVLMLEMKMSPAAKAF-LIS---GYPRNMRDVVEYSDKIK 80 (520)
Q Consensus 12 ~~~~~h~s~G~~l~~~i~~G~-------~~g~lVPdelv~~ll~~~l~~~~~~~G~-ILD---GFPRt~~QA~~~~~~~~ 80 (520)
|+++ +++.+..++..+ |. ..|..+..++..+++...+. ...+ |++ |+|.. +. ..
T Consensus 31 lg~~-~id~D~~~~~~~--g~~~~~~~~~~g~~~~~~~~~~~l~~~~~----~~~~~Vi~~g~g~~~~-~~-------l~ 95 (168)
T 1zuh_A 31 LKLE-VLDTDMIISERV--GLSVREIFEELGEDNFRMFEKNLIDELKT----LKTPHVISTGGGIVMH-EN-------LK 95 (168)
T ss_dssp HTCC-EEEHHHHHHHHH--TSCHHHHHHHTCHHHHHHHHHHHHHHHHT----CSSCCEEECCGGGGGC-GG-------GT
T ss_pred hCCC-EEEChHHHHHHh--CCCHHHHHHHhCHHHHHHHHHHHHHHHHh----cCCCEEEECCCCEech-hH-------Hh
Confidence 4566 777777666543 22 01223333444444444332 2344 664 46655 22 23
Q ss_pred CcCEEEEEEcCHHHHHHHhh-hCccCCccc---hHHHHHHHHHHHhccchHHHHhhhCCcEEEEeCCCChHHHHHHHHHH
Q psy11031 81 TINGVILIAWRQSLLERQID-YGAKLGHVI---LSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTA 156 (520)
Q Consensus 81 ~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d---~e~i~~Rl~~Y~~~t~pvi~~Y~~~~~l~~Ida~~~~eeV~~~i~~~ 156 (520)
.++.+|+|+||.+++.+|+. |+. ..|.. .+.+.+++. ... .+|.+.. -+.||.+.+++++.++|.+.
T Consensus 96 ~~~~vi~l~~~~e~~~~Rl~~r~~-~~r~~~~~~~~~~~~~~----~r~---~~~~~~a-~~~Id~~~~~e~~~~~I~~~ 166 (168)
T 1zuh_A 96 GLGTTFYLKMDFETLIKRLNQKER-EKRPLLNNLTQAKELFE----KRQ---ALYEKNA-SFIIDARGGLNNSLKQVLQF 166 (168)
T ss_dssp TSEEEEEEECCHHHHHHHHCC---------CCTTHHHHHHHH----HHH---HHHHHTC-SEEEEGGGCHHHHHHHHHHC
T ss_pred cCCEEEEEECCHHHHHHHHhccCC-CCCCCccCHHHHHHHHH----HHH---HHHHHHC-CEEEECCCCHHHHHHHHHHH
Confidence 47899999999999999994 410 12221 222332222 222 3454421 35678888999999998765
Q ss_pred H
Q psy11031 157 V 157 (520)
Q Consensus 157 l 157 (520)
+
T Consensus 167 l 167 (168)
T 1zuh_A 167 I 167 (168)
T ss_dssp -
T ss_pred h
Confidence 4
No 351
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.82 E-value=0.044 Score=57.83 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
.|.+|++.|++||||||.+.+|+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999853
No 352
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.77 E-value=0.063 Score=46.90 Aligned_cols=24 Identities=25% Similarity=0.363 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
..+|+|+|.+|+||||+..++...
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 467999999999999999999864
No 353
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=92.74 E-value=0.072 Score=52.82 Aligned_cols=33 Identities=15% Similarity=0.121 Sum_probs=28.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhCCCCeeeehhh
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGK 259 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gd 259 (520)
..++|.|++|+||||+++.+++.. ++.++++..
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~-~~~~~~~~~ 64 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNER-PGILIDCRE 64 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHS-SEEEEEHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHc-CcEEEEeec
Confidence 689999999999999999999986 777777654
No 354
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.73 E-value=0.058 Score=52.84 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=23.2
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
-....++.|+|+.||||||+.+.|+.-
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 345678999999999999999998754
No 355
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.72 E-value=0.061 Score=57.68 Aligned_cols=27 Identities=26% Similarity=0.462 Sum_probs=23.7
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
...+.+|.|+|+.||||||++++|+..
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHH
Confidence 345789999999999999999999864
No 356
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.72 E-value=0.054 Score=47.40 Aligned_cols=24 Identities=13% Similarity=0.332 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
..+|+|+|.+||||||+..++...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999999864
No 357
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.71 E-value=0.063 Score=47.07 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
..+|+|+|.+|+||||+..+|...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 467999999999999999999864
No 358
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=92.71 E-value=0.058 Score=48.55 Aligned_cols=28 Identities=14% Similarity=0.148 Sum_probs=22.3
Q ss_pred CCCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 221 ERNTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 221 ~~~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
...+..+|+|+|.+|+||||+..+|...
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcC
Confidence 3455688999999999999999999865
No 359
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.68 E-value=0.063 Score=47.73 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
....+|+|+|.+|+||||+..+|....
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCC
Confidence 346789999999999999999998653
No 360
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.66 E-value=0.055 Score=48.00 Aligned_cols=26 Identities=15% Similarity=0.390 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....+|+|+|.+|+||||++.+|...
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC
Confidence 34578999999999999999999754
No 361
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.66 E-value=0.057 Score=54.24 Aligned_cols=23 Identities=26% Similarity=0.576 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
+. ++|.||+|+||||+++.|+..
T Consensus 37 ~~-~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 37 PH-LLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CC-EEEECSTTSSHHHHHHTHHHH
T ss_pred Ce-EEEECCCCCCHHHHHHHHHHH
Confidence 44 999999999999999999985
No 362
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.65 E-value=0.059 Score=48.57 Aligned_cols=27 Identities=11% Similarity=0.017 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
....+|+|+|.+|+||||+++.|...+
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhc
Confidence 345789999999999999999888765
No 363
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.64 E-value=0.061 Score=53.00 Aligned_cols=28 Identities=29% Similarity=0.251 Sum_probs=23.8
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
-....++.|+|+.||||||+.+.|+.-+
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4456789999999999999999997643
No 364
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=92.64 E-value=0.07 Score=50.20 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=20.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
+.++++.|+||||||+.|..+...
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHH
Confidence 458999999999999999876443
No 365
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.63 E-value=0.064 Score=48.42 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....+|+|+|.+|+||||++.++...
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcC
Confidence 34578999999999999999999875
No 366
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.61 E-value=0.068 Score=48.02 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
..+|+|+|.+|+||||+..+|+..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999864
No 367
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.60 E-value=0.059 Score=47.36 Aligned_cols=25 Identities=12% Similarity=0.201 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
...+|+|+|.+|+||||+..++...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3568999999999999999999864
No 368
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.60 E-value=0.068 Score=47.67 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
...+|+|+|.+|+||||++.+|...
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHhhC
Confidence 4578999999999999999999864
No 369
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.59 E-value=0.058 Score=53.38 Aligned_cols=26 Identities=27% Similarity=0.288 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....++.|+||.||||||+++.|+.-
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 45678999999999999999999754
No 370
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.56 E-value=0.063 Score=52.73 Aligned_cols=27 Identities=30% Similarity=0.199 Sum_probs=23.2
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
-....++.|+|+.||||||+.+.|+.-
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 345678999999999999999998754
No 371
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.56 E-value=0.067 Score=47.95 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
...+|+|+|.+||||||++.+|...
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 4578999999999999999999864
No 372
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=92.56 E-value=0.062 Score=48.75 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=22.8
Q ss_pred CCCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 221 ERNTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 221 ~~~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
.....++|+|+|.+|+||||+..+|...
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3456789999999999999999999764
No 373
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.54 E-value=0.05 Score=47.65 Aligned_cols=25 Identities=12% Similarity=0.288 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
...+|+|+|.+|+||||+..+|...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 3568999999999999999999864
No 374
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.53 E-value=0.062 Score=52.17 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=23.0
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
-....++.|+|+.||||||+.+.|+.-
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 345678999999999999999998754
No 375
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.52 E-value=0.065 Score=52.43 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=23.8
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
-....++.|+|+.||||||+.+.|+.-+
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3456789999999999999999997643
No 376
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.51 E-value=0.062 Score=48.54 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
...+|+|+|.+|+||||++..|...
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcC
Confidence 3578999999999999999999865
No 377
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.50 E-value=0.059 Score=52.76 Aligned_cols=24 Identities=21% Similarity=0.165 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQ 247 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~ 247 (520)
...++.|.|++||||||++..|+.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999998875
No 378
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.49 E-value=0.07 Score=46.92 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHhh
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k 248 (520)
.+|+|+|.+|+||||++.++...
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 47999999999999999999743
No 379
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.48 E-value=0.059 Score=54.29 Aligned_cols=22 Identities=18% Similarity=0.404 Sum_probs=20.6
Q ss_pred EEEEcCCCCChhHHHHHHHhhC
Q psy11031 228 VWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 228 I~vlG~PGSGKsT~a~~La~k~ 249 (520)
+++.||||+||||+++.+++..
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999874
No 380
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=92.48 E-value=0.087 Score=51.99 Aligned_cols=25 Identities=12% Similarity=0.445 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
...|++.||||+|||++|..|+..+
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhh
Confidence 3469999999999999999999865
No 381
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.48 E-value=0.071 Score=46.71 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
..+|+|+|.+|+||||+..+|....
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4689999999999999999998753
No 382
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.48 E-value=0.069 Score=48.43 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....+|+|+|.+|+||||+..+|...
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcC
Confidence 44578999999999999999999875
No 383
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.47 E-value=0.063 Score=48.08 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
..+|+|+|.+|+||||+..+|...
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhC
Confidence 468999999999999999999865
No 384
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.46 E-value=0.064 Score=51.74 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....++.|+|+.||||||+.+.|+.-
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45678999999999999999999754
No 385
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.45 E-value=0.073 Score=52.25 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=22.9
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQ 247 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~ 247 (520)
-....++.|+|+.||||||+.+.|+.
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34567899999999999999999985
No 386
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.45 E-value=0.071 Score=51.75 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQ 247 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~ 247 (520)
....++.|+|+.||||||+.+.|+.
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4567899999999999999999985
No 387
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.43 E-value=0.065 Score=52.27 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....++.|+|+.||||||+.+.|+.-
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45678999999999999999998753
No 388
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.42 E-value=0.073 Score=46.62 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHhh
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k 248 (520)
.+|+|+|.+|+||||++.++...
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEEECCCCCCHHHHHHHHcCc
Confidence 57999999999999999998753
No 389
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.41 E-value=0.068 Score=52.26 Aligned_cols=27 Identities=11% Similarity=0.116 Sum_probs=23.1
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
-....++.|+|+.||||||+.+.|+.-
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 345678999999999999999999754
No 390
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.40 E-value=0.22 Score=44.73 Aligned_cols=90 Identities=12% Similarity=0.138 Sum_probs=54.5
Q ss_pred CCcEEEe-CCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHhh-hCccCCccchHHHHHHHHHHHhccchHHHHhhhC
Q psy11031 57 AKAFLIS-GYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQID-YGAKLGHVILSLARMELANFYQNVTPVTDFFDQR 134 (520)
Q Consensus 57 ~~G~ILD-GFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~ 134 (520)
..++||+ |++.-.. . .+ ...+.+|+|++|.+++.+|+. +... .|...+. ..++....+ ....+|.+.
T Consensus 73 ~~~~vi~~g~~~~~~-~-~l----~~~~~~i~l~~~~e~~~~R~~~r~~~-~r~~~~~-~~~i~~~~~---~r~~~y~~~ 141 (175)
T 1via_A 73 CEKACIATGGGFVNV-S-NL----EKAGFCIYLKADFEYLKKRLDKDEIS-KRPLFYD-EIKAKKLYN---ERLSKYEQK 141 (175)
T ss_dssp CCSEEEECCTTGGGS-T-TG----GGGCEEEEEECCHHHHTTCCCGGGTT-TSCTTCC-HHHHHHHHH---HHHHHHHHH
T ss_pred cCCEEEECCCCEehh-h-HH----hcCCEEEEEeCCHHHHHHHHhcccCC-CCCCccc-HHHHHHHHH---HHHHHHHhc
Confidence 3567777 7665443 2 12 234789999999999999983 4211 3432110 122222222 223556542
Q ss_pred CcEEEEeCC-CChHHHHHHHHHHHH
Q psy11031 135 GMLIAVNGE-RNPVEVYADFRTAVL 158 (520)
Q Consensus 135 ~~l~~Ida~-~~~eeV~~~i~~~l~ 158 (520)
. .+.||++ .+++++.+.|.+.+.
T Consensus 142 ~-~~~Idt~~~~~eev~~~I~~~l~ 165 (175)
T 1via_A 142 A-NFILNIENKNIDELLSEIKKVIK 165 (175)
T ss_dssp C-SEEEECTTCCHHHHHHHHHHHHC
T ss_pred C-CEEEECCCCCHHHHHHHHHHHHH
Confidence 2 5789999 899999999988875
No 391
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.39 E-value=0.061 Score=48.72 Aligned_cols=22 Identities=27% Similarity=0.620 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHh
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQ 247 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~ 247 (520)
.+|+|+|++|+||||+..+++.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999986
No 392
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=92.38 E-value=0.074 Score=52.34 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChhHHHHHHHhhC
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
.++|.|+||+||||+|+.+++.+
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 49999999999999999999874
No 393
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.38 E-value=0.088 Score=47.68 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....+|+|+|.+|+||||+..+|...
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcC
Confidence 44678999999999999999999864
No 394
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.37 E-value=0.076 Score=53.96 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQ 247 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~ 247 (520)
....++.|+|+|||||||+.+.|+.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999985
No 395
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.36 E-value=0.066 Score=52.64 Aligned_cols=27 Identities=19% Similarity=0.210 Sum_probs=23.0
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
-....++.|+|+.||||||+.+.|+.-
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 345678999999999999999999753
No 396
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.35 E-value=0.059 Score=48.14 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQ 247 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~ 247 (520)
....+|+|+|.+|+||||+..++..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4578999999999999999998874
No 397
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=92.33 E-value=0.064 Score=54.79 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
+...++.|+|+|||||||+|..|+..+
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999999999999998764
No 398
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.30 E-value=0.067 Score=47.34 Aligned_cols=24 Identities=13% Similarity=0.299 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
..+|+|+|.+|+||||++.+|...
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 478999999999999999999854
No 399
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.30 E-value=0.061 Score=51.19 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....++.|+|+.||||||+.+.|+.-
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34568999999999999999998754
No 400
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.27 E-value=0.077 Score=53.16 Aligned_cols=38 Identities=13% Similarity=0.159 Sum_probs=27.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCC---C--CeeeehhhHHh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYP---N--WTQISLGKLLR 262 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~---g--~~~is~gdLlr 262 (520)
...++|.|+||+|||++|..|+.... | +..+++.+++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~ 194 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAI 194 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHH
Confidence 46799999999999999999886431 2 23456666555
No 401
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.24 E-value=0.071 Score=51.05 Aligned_cols=27 Identities=15% Similarity=0.342 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
....++.|+|+.||||||+.+.|+..+
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999999999997543
No 402
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.24 E-value=0.085 Score=48.06 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
...+|+|+|.+||||||+..+|...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4578999999999999999999864
No 403
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.23 E-value=0.077 Score=47.97 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
....+|+|+|.+|+||||++.+|....
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCC
Confidence 345789999999999999999998753
No 404
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.20 E-value=0.08 Score=47.58 Aligned_cols=26 Identities=15% Similarity=0.248 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....+|+|+|.+|+||||+..++...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 45688999999999999999999754
No 405
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.20 E-value=0.044 Score=50.50 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....+|.|+|++||||||+.+.|+..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 44678999999999999999987643
No 406
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.19 E-value=0.086 Score=47.61 Aligned_cols=26 Identities=8% Similarity=0.300 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....+|+|+|.+|+||||+..++...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 45688999999999999999999865
No 407
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.19 E-value=0.07 Score=47.46 Aligned_cols=26 Identities=19% Similarity=0.385 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....+|+|+|.+|+||||+..++...
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcC
Confidence 34578999999999999999999864
No 408
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.16 E-value=0.091 Score=47.74 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....+|+|+|.+|+||||+..++...
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 44578999999999999999887764
No 409
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.16 E-value=0.076 Score=52.07 Aligned_cols=27 Identities=33% Similarity=0.276 Sum_probs=23.0
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
-....++.|+|+.||||||+.+.|+.-
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 345678999999999999999998753
No 410
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.10 E-value=0.094 Score=47.31 Aligned_cols=26 Identities=15% Similarity=0.171 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
.+..+|+|+|.+|+||||+..+|...
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34678999999999999999999854
No 411
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.10 E-value=0.087 Score=53.77 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
...+|.|+|+|||||||+...|...
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4688999999999999999999863
No 412
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=92.06 E-value=0.083 Score=54.35 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=21.8
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHH
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVL 246 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La 246 (520)
..+..+|+|+|.+||||||+++.+.
T Consensus 30 ~~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 30 SARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred hcCccEEEEECCCCCcHHHHHHHHH
Confidence 3567899999999999999999874
No 413
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.05 E-value=0.073 Score=54.90 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
.....|+|+|++||||||+.+.|+..+
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 345689999999999999999998754
No 414
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=92.04 E-value=0.066 Score=49.25 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=21.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQ 247 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~ 247 (520)
....+|+|+|.+|+||||+..++..
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHh
Confidence 4567899999999999999999863
No 415
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.03 E-value=0.083 Score=48.27 Aligned_cols=25 Identities=12% Similarity=0.271 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
...+|+|+|.+|+||||+..+|...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3578999999999999999999864
No 416
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.01 E-value=0.078 Score=51.63 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....++.|+|+.||||||+.+.|+.-
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 34678999999999999999998754
No 417
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=91.98 E-value=0.091 Score=52.43 Aligned_cols=36 Identities=14% Similarity=0.195 Sum_probs=27.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhCC----CCeeeehhhH
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDYP----NWTQISLGKL 260 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~~----g~~~is~gdL 260 (520)
+.-|+|.|+||+|||++|+.|++... .+..++++.+
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~ 64 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAAL 64 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSC
T ss_pred CCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCC
Confidence 34589999999999999999988421 3566665543
No 418
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=91.94 E-value=0.081 Score=51.86 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHHhhC
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
.++|.|+||+|||++|+.+++.+
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHh
Confidence 39999999999999999999874
No 419
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.93 E-value=0.089 Score=47.80 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=22.2
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
.....+|+|+|.+|+||||+..++...
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhC
Confidence 345678999999999999999998764
No 420
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.91 E-value=0.089 Score=48.07 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....+|+|+|.+|+||||+..+|...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 34678999999999999999999865
No 421
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=91.91 E-value=0.089 Score=48.10 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=22.5
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
.....+|+|+|.+|+||||+.+.+..++
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcC
Confidence 4456789999999999999999887764
No 422
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.88 E-value=0.081 Score=47.46 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHhh
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k 248 (520)
.+|+|+|.+|+||||+..++...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCc
Confidence 46999999999999999999864
No 423
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.82 E-value=0.097 Score=45.72 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHHHHHhh
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k 248 (520)
+|+|+|.+|+||||++.++...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999999764
No 424
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.81 E-value=0.083 Score=52.30 Aligned_cols=27 Identities=11% Similarity=-0.045 Sum_probs=22.9
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
-....++.|+|+.||||||+.+.|+.-
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 345678999999999999999998754
No 425
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.80 E-value=0.083 Score=51.48 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....++.|+|+.||||||+.+.|+.-
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34678999999999999999999754
No 426
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.80 E-value=0.085 Score=53.84 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
...++|.|+|.||+||||++..|+..
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 45788999999999999999999754
No 427
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=91.80 E-value=0.092 Score=47.90 Aligned_cols=25 Identities=12% Similarity=0.137 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
+..+|+|+|.+|+||||+..++...
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3568999999999999999999874
No 428
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.79 E-value=0.095 Score=47.38 Aligned_cols=26 Identities=12% Similarity=0.215 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....+|+|+|.+|+||||+..+|...
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcC
Confidence 34678999999999999999999754
No 429
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.78 E-value=0.084 Score=53.34 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
..+.+|.|+|++||||||.+..|+..+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 347889999999999999999998653
No 430
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=91.78 E-value=0.11 Score=47.75 Aligned_cols=28 Identities=14% Similarity=0.027 Sum_probs=23.7
Q ss_pred CCCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 221 ERNTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 221 ~~~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
......+|+|+|.+|+||||+..++...
T Consensus 5 ~~~~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 5 SVSKFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp SCCCEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcCceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3345678999999999999999999864
No 431
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.77 E-value=0.088 Score=47.71 Aligned_cols=26 Identities=15% Similarity=0.164 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....+|+|+|.+|+||||+..+|...
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcC
Confidence 44578999999999999999999864
No 432
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.75 E-value=0.09 Score=51.64 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhHHHHHHHhhC
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
.++|.|+||+||||+|+.+++.+
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 39999999999999999999874
No 433
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=91.69 E-value=0.12 Score=48.57 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....+|+|+|.+|+||||+..+|...
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45689999999999999999999764
No 434
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.68 E-value=0.087 Score=55.99 Aligned_cols=28 Identities=18% Similarity=0.215 Sum_probs=24.0
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
.....++.|+|+.||||||+++.|+..+
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 3457889999999999999999998743
No 435
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.67 E-value=0.084 Score=48.03 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....+|+|+|.+|+||||+..+|...
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcC
Confidence 44678999999999999999999865
No 436
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.65 E-value=0.11 Score=47.24 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....+|+|+|.+|+||||+..+|...
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcC
Confidence 44578999999999999999999865
No 437
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=91.61 E-value=0.087 Score=54.14 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
...++.|.|+|||||||+|..++..
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998764
No 438
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.61 E-value=0.099 Score=46.60 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
..+|+|+|.+|+||||+..++...
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999999854
No 439
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=91.58 E-value=0.1 Score=52.95 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=24.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhC-CCCeeeeh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDY-PNWTQISL 257 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~-~g~~~is~ 257 (520)
...++|.|+|||||||+|..++... ....++++
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 4568999999999999999998641 02345555
No 440
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.57 E-value=0.072 Score=56.19 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
.|.+|+|+|++||||||+|..|+..+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998753
No 441
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.54 E-value=0.087 Score=54.00 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
....+.|+|+.||||||+++.|+..+
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 45689999999999999999999865
No 442
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=91.53 E-value=0.11 Score=52.24 Aligned_cols=26 Identities=12% Similarity=0.180 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
.+..++|.|+||+||||+++.+++.+
T Consensus 37 ~~~~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 37 IHHAYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp CCSEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999999875
No 443
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=91.50 E-value=0.11 Score=48.09 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=21.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
.+..+|+|+|.+|+||||+..++...
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34678999999999999999999865
No 444
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=91.49 E-value=0.11 Score=47.45 Aligned_cols=27 Identities=11% Similarity=0.160 Sum_probs=21.4
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
.....+|+|+|.+|+||||+..++...
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhC
Confidence 455788999999999999999998754
No 445
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=91.49 E-value=0.1 Score=55.42 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
....++|+|+||+|||++|+.|++..
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 34568999999999999999999873
No 446
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.44 E-value=0.11 Score=53.57 Aligned_cols=27 Identities=11% Similarity=0.306 Sum_probs=23.1
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
-...-++.|+||.||||||+.+.|+--
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhcC
Confidence 345678999999999999999999853
No 447
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=91.42 E-value=0.045 Score=62.22 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=29.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhCCCC--eeeehhhHHh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNW--TQISLGKLLR 262 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~~g~--~~is~gdLlr 262 (520)
..+..++|.||||+||||+|+.|+..+ +. ..++.++++.
T Consensus 509 ~~~~~vLL~GppGtGKT~Lakala~~~-~~~~i~v~~~~l~~ 549 (806)
T 1ypw_A 509 TPSKGVLFYGPPGCGKTLLAKAIANEC-QANFISIKGPELLT 549 (806)
T ss_dssp CCCCCCCCBCCTTSSHHHHHHHHHHHH-TCCCCCCCCSSSTT
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHHh-CCCEEEEechHhhh
Confidence 345679999999999999999999875 44 4455555554
No 448
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=91.39 E-value=0.1 Score=49.55 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
....+|+|+|.+|+||||+...|....
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCC
Confidence 456789999999999999999998753
No 449
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.37 E-value=0.091 Score=51.58 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=22.5
Q ss_pred CCCCCeEEEEEcCCCCChhHHHHHHHh
Q psy11031 221 ERNTPLVVWVVGGPGSSKSEMCQKVLQ 247 (520)
Q Consensus 221 ~~~~p~~I~vlG~PGSGKsT~a~~La~ 247 (520)
.-. ..++.|+|+.||||||+.+.|+.
T Consensus 27 ~i~-Ge~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 27 EVN-GEKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp EEC-SSEEEEECCTTSSHHHHHHHHTT
T ss_pred EEC-CEEEEEECCCCCCHHHHHHHHhC
Confidence 345 67899999999999999999874
No 450
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.36 E-value=0.11 Score=53.38 Aligned_cols=27 Identities=15% Similarity=0.073 Sum_probs=23.1
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
-....++.|+||.||||||+.+.|+.-
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHCC
Confidence 345678999999999999999999853
No 451
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.36 E-value=0.099 Score=47.46 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=23.2
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
.....+|+|+|.+|+||||+..++...
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcC
Confidence 345678999999999999999999875
No 452
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=91.33 E-value=0.098 Score=47.65 Aligned_cols=26 Identities=23% Similarity=0.480 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....+|+|+|.+|+||||+..+|...
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC-
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34568999999999999999998754
No 453
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.30 E-value=0.1 Score=53.56 Aligned_cols=25 Identities=32% Similarity=0.311 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
.-.|+|+||.||||||+.+.|+..+
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4489999999999999999887643
No 454
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=91.29 E-value=0.083 Score=47.81 Aligned_cols=27 Identities=19% Similarity=0.227 Sum_probs=21.7
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
..+..+|+|+|.+|+||||+..+|...
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 345678999999999999999998754
No 455
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=91.25 E-value=0.11 Score=49.95 Aligned_cols=26 Identities=12% Similarity=0.115 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
...++++.|+|||||||.+-.++.++
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 35789999999999999998877654
No 456
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.21 E-value=0.1 Score=51.33 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
..+.|+|++||||||+.+.|+...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998643
No 457
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.16 E-value=0.12 Score=53.23 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=23.2
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
-....++.|+||.||||||+.+.|+.-
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcC
Confidence 345678999999999999999999854
No 458
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.15 E-value=0.12 Score=50.29 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
..+|.|+|.|||||||+...|....
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 4679999999999999999998653
No 459
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=91.15 E-value=0.13 Score=57.73 Aligned_cols=36 Identities=14% Similarity=0.349 Sum_probs=30.2
Q ss_pred EEEEEcCCCCChhHHHHHHHhhC----CCCeeeehhhHHh
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDY----PNWTQISLGKLLR 262 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~----~g~~~is~gdLlr 262 (520)
.++|.||||+|||++|+.|++.+ ..+..++++++..
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~ 562 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME 562 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccc
Confidence 69999999999999999999863 2477788877765
No 460
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.13 E-value=0.12 Score=53.58 Aligned_cols=27 Identities=22% Similarity=0.185 Sum_probs=23.2
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
-...-++.|+||.||||||+.+.|+--
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcC
Confidence 345678999999999999999999853
No 461
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=91.09 E-value=0.1 Score=47.94 Aligned_cols=26 Identities=19% Similarity=0.423 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....+|+|+|.+|+||||++.+|...
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC
Confidence 45678999999999999999999754
No 462
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.08 E-value=0.14 Score=48.96 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=23.3
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
..+..++++.|.+|+||||++..|+..
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 345788999999999999999999843
No 463
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.07 E-value=0.13 Score=47.10 Aligned_cols=26 Identities=19% Similarity=0.460 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....+|+|+|.+|+||||+..+|...
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 34678999999999999999999854
No 464
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.07 E-value=0.11 Score=53.37 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....++.|+||.||||||+.+.|+--
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 34678999999999999999999854
No 465
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.06 E-value=0.12 Score=46.81 Aligned_cols=27 Identities=11% Similarity=0.239 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
....+|+|+|.+|+||||++.+|....
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCC
Confidence 446789999999999999999998753
No 466
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=91.04 E-value=0.12 Score=48.04 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
.+..+|+|+|.+|+||||++.+|...
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcC
Confidence 34678999999999999999999853
No 467
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=91.03 E-value=0.14 Score=46.82 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
.+..+|+|+|.+|+||||++.++...
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhC
Confidence 45688999999999999999999754
No 468
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.03 E-value=0.11 Score=51.64 Aligned_cols=27 Identities=15% Similarity=0.313 Sum_probs=23.1
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
-....++.|+|+.||||||+.+.|+.-
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 345678999999999999999998754
No 469
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=91.00 E-value=0.09 Score=56.50 Aligned_cols=23 Identities=26% Similarity=0.577 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHHhhC
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
-|+|.|+||+|||++|+.|+...
T Consensus 43 ~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 43 SVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp EEEEECCSSSSHHHHHHHGGGGB
T ss_pred eeEeecCchHHHHHHHHHHHHHH
Confidence 59999999999999999999865
No 470
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=90.99 E-value=0.13 Score=53.24 Aligned_cols=27 Identities=11% Similarity=0.112 Sum_probs=23.2
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
-....++.|+||.||||||+.+.|+--
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcC
Confidence 345678999999999999999999854
No 471
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=90.96 E-value=0.11 Score=55.99 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
..+.+|.|+|.|||||||++.+|+..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYY 124 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35778999999999999999999953
No 472
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=90.96 E-value=0.14 Score=46.16 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
...+|+|+|.+|+||||+..+|...
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 3578999999999999999999865
No 473
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.93 E-value=0.084 Score=53.09 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=24.1
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
-....++.|+|+.||||||+.+.|+.-+
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 4557889999999999999999998654
No 474
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=90.87 E-value=0.12 Score=48.72 Aligned_cols=23 Identities=22% Similarity=0.497 Sum_probs=20.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHH
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVL 246 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La 246 (520)
....++|.|+||||||++|..++
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHH
Confidence 35689999999999999998765
No 475
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.79 E-value=0.11 Score=47.19 Aligned_cols=25 Identities=24% Similarity=0.175 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
...+|+|+|.+|+||||+..++...
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999864
No 476
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=90.76 E-value=0.13 Score=47.69 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....+|+|+|.+|+||||++.++...
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34578999999999999999999875
No 477
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=90.75 E-value=0.44 Score=43.52 Aligned_cols=90 Identities=9% Similarity=0.059 Sum_probs=59.8
Q ss_pred CCcEEEeCCCCCHHhHHHHHHhcCCcCEEEEEEcCHHHHHHHhh-hCccCCccchHHHHHHHHHHHhccchHHHHhhhCC
Q psy11031 57 AKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQID-YGAKLGHVILSLARMELANFYQNVTPVTDFFDQRG 135 (520)
Q Consensus 57 ~~G~ILDGFPRt~~QA~~~~~~~~~pd~VI~L~~pd~~l~~Rl~-rg~~~~r~d~e~i~~Rl~~Y~~~t~pvi~~Y~~~~ 135 (520)
....|+|+.|+...++. .....+..|+++..+.+++.+|+. |+ +.+++.+.+|+..+... .+++....
T Consensus 97 g~~vi~d~~~~~~~~~~---~~~~~~~~v~~~~~~~e~l~~Rl~~R~----~~~~~~i~~rl~~~~~~----~~~~~~~d 165 (205)
T 3tr0_A 97 GRDVLLEIDWQGARQIR---ELFPPALSIFILPPSIEALRERLIKRR----QDDTAIIEQRLALAREE----MAHYKEFD 165 (205)
T ss_dssp TCEEEEECCHHHHHHHH---HHCTTCEEEEEECSCHHHHHHHHHTCT----TSCSSTHHHHHHHHHHH----HTTGGGCS
T ss_pred CCeEEEEECHHHHHHHH---HhCCCcEEEEEECcCHHHHHHHHHHhC----CCCHHHHHHHHHHHHHH----HhcccCCC
Confidence 35689999888777763 233344445455556899999994 43 33456778899888544 34454443
Q ss_pred cEEEEeCCCChHHHHHHHHHHHHHH
Q psy11031 136 MLIAVNGERNPVEVYADFRTAVLKI 160 (520)
Q Consensus 136 ~l~~Ida~~~~eeV~~~i~~~l~~~ 160 (520)
++.+|. +.+++++++.+++...
T Consensus 166 -~vi~n~--~~~~~~~~l~~~i~~~ 187 (205)
T 3tr0_A 166 -YLVVND--NFDQAVQNLIHIISAE 187 (205)
T ss_dssp -EEEECS--SHHHHHHHHHHHHHHH
T ss_pred -EEEECC--CHHHHHHHHHHHHHHH
Confidence 333444 8999999999998753
No 478
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=90.74 E-value=0.11 Score=52.99 Aligned_cols=25 Identities=16% Similarity=0.233 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
...++.|.|+|||||||+|..++..
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999988753
No 479
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=90.73 E-value=0.12 Score=53.33 Aligned_cols=26 Identities=12% Similarity=0.155 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....++.|+||.||||||+.+.|+--
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcC
Confidence 34678999999999999999999853
No 480
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=90.72 E-value=0.12 Score=53.97 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHH
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVL 246 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La 246 (520)
...++.|+|+|||||||+|..|+
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHH
Confidence 35689999999999999999776
No 481
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.68 E-value=0.13 Score=47.70 Aligned_cols=26 Identities=15% Similarity=0.348 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....+|+|+|.+|+||||++.+|...
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhC
Confidence 34578999999999999999998864
No 482
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=90.67 E-value=0.14 Score=57.36 Aligned_cols=35 Identities=11% Similarity=0.267 Sum_probs=28.3
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCC--eeeehhhHHh
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNW--TQISLGKLLR 262 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~--~~is~gdLlr 262 (520)
.++|.|+||+|||++|+.|++.+ +. ..++++++..
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l-~~~~~~i~~s~~~~ 526 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL-GIELLRFDMSEYME 526 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-TCEEEEEEGGGCSS
T ss_pred EEEEECCCCCcHHHHHHHHHHHh-cCCEEEEechhhcc
Confidence 69999999999999999999986 64 4556666544
No 483
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=90.66 E-value=0.15 Score=51.83 Aligned_cols=26 Identities=8% Similarity=0.132 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
+...++.|.|+|||||||+|..++..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999999999875
No 484
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=90.64 E-value=0.1 Score=52.92 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
...+.|+|+.||||||+.+.|+..+
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999998765
No 485
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.63 E-value=0.12 Score=47.70 Aligned_cols=25 Identities=20% Similarity=0.141 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
...+|+|+|.+|+||||+..+|...
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcC
Confidence 4578999999999999999999875
No 486
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=90.62 E-value=0.13 Score=47.14 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
...+|+|+|.+|+||||+..+|...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 3578999999999999999999864
No 487
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=90.60 E-value=0.13 Score=47.18 Aligned_cols=24 Identities=8% Similarity=0.070 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQ 247 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~ 247 (520)
+..+|+|+|.+|+||||+..++..
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999875
No 488
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=90.54 E-value=0.15 Score=46.93 Aligned_cols=26 Identities=15% Similarity=0.156 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....+|+|+|.+|+||||++.++...
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 45678999999999999999999864
No 489
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.53 E-value=0.15 Score=46.11 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 226 LVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 226 ~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
.+.+|+|+.||||||+.+.|.--+
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999997654
No 490
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.51 E-value=0.1 Score=53.45 Aligned_cols=27 Identities=11% Similarity=0.107 Sum_probs=23.1
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
-....++.|+||.||||||+.+.|+--
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcC
Confidence 345678999999999999999999853
No 491
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}
Probab=90.50 E-value=1.7 Score=43.54 Aligned_cols=139 Identities=15% Similarity=0.139 Sum_probs=73.8
Q ss_pred EEEEEcCCCCChhHHHHHHHhhCCCCeeeehhhHHhhhhcccccCCcchHHHHhhhhcCCccchHHHHHHHHHHHhcccc
Q psy11031 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKY 306 (520)
Q Consensus 227 ~I~vlG~PGSGKsT~a~~La~k~~g~~~is~gdLlr~~~~~~~~~t~~g~~i~~~l~~G~~vPd~lv~~ll~~~l~~~~~ 306 (520)
-|+|+|| ||+|+.++|.+.|++..-+++. +-+ -+.+|+.+|-+.|.+++ .
T Consensus 147 PvVl~GP---~k~~l~~~L~~~~P~~F~~~v~-~~r------------------~i~~~~fis~~~V~~vl----~---- 196 (308)
T 3kfv_A 147 PVVILGP---VADIAMQKLTAEMPDQFEIAET-VSR------------------TDSPSKIIKLDTVRVIA----E---- 196 (308)
T ss_dssp CEEEEST---THHHHHHHHHHHCTTTEEECCC-C--------------------------CCCHHHHHHHH----H----
T ss_pred eEEEeCc---cHHHHHHHHHHhCccccccccc-ccc------------------cccCCCeecHHHHHHHH----H----
Confidence 3788898 7999999999988765555442 111 14567777766665554 3
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHhhcCCCCCEEEecCChh-hhh--ccC-CCCCHHHHHHHHHHHHHHhHHHHHHhhhCCC
Q psy11031 307 TEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKL-VLH--KGQ-IDNSVSAFRRRLELFRERTLPMLRAMDVETR 382 (520)
Q Consensus 307 ~~~~G~ILDGFPrt~~Qae~l~~~~~~p~~VI~Ld~~~~-~~~--r~R-~dD~~e~~~~Rl~~f~~~~~~l~~~y~~~~~ 382 (520)
.++.+|||==+.. |+.+..... .+.+|||.-|.. .+. ++| ..++++.++++++.-. .+...|...-.
T Consensus 197 -~Gk~~ILDId~QG---a~~lk~~~~-~pi~IFI~PPS~eeL~~rr~R~~~esee~~~r~~~aa~----eiE~~~~~~FD 267 (308)
T 3kfv_A 197 -KDKHALLDVTPSA---IERLNYVQY-YPIVVFFIPESRPALKALRQWLAPASRRSTRRLYAQAQ----KLRKHSSHLFT 267 (308)
T ss_dssp -TTCEEEECCCHHH---HHHHHHTTC-CCEEEEEEESCHHHHHHHHHHHSTTCCCCHHHHHHHHH----HHHHHHGGGCS
T ss_pred -CCCcEEEEECHHH---HHHHHhcCC-CCEEEEEeCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH----HHHHhhhccCc
Confidence 4778999966444 344444333 346778776542 222 223 2344555666555422 22222322212
Q ss_pred EEEEECCCCHHHHHHHHHHHHHH
Q psy11031 383 LTIVDGDTQLPQVREEFERVLKK 405 (520)
Q Consensus 383 l~~IDa~~~~e~V~~~I~~~I~~ 405 (520)
.+. +.+.+.+.-++++.++|..
T Consensus 268 ~vI-~VNDdle~A~~~L~~iI~~ 289 (308)
T 3kfv_A 268 ATI-PLNGTSDTWYQELKAIIRE 289 (308)
T ss_dssp EEE-EECSSSTHHHHHHHHHHHH
T ss_pred EEE-EcCCCHHHHHHHHHHHHHH
Confidence 333 3344556667777766654
No 492
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=90.50 E-value=0.15 Score=46.72 Aligned_cols=26 Identities=15% Similarity=0.128 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....+|+|+|.+|+||||++.++...
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhC
Confidence 34678999999999999999999864
No 493
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=90.48 E-value=0.15 Score=48.97 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....+|+|+|.+||||||+..+|...
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCC
Confidence 34678999999999999999999865
No 494
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=90.43 E-value=0.15 Score=47.61 Aligned_cols=26 Identities=27% Similarity=0.132 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhhC
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQDY 249 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k~ 249 (520)
...++++.|++||||||.+-.++.++
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 35789999999999999998888765
No 495
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=90.39 E-value=0.12 Score=51.54 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 225 PLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 225 p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
+.+|.++|++||||||++..|+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 788999999999999999999864
No 496
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=90.28 E-value=0.14 Score=47.06 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....+|+|+|.+|+||||++.+|...
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhC
Confidence 34578999999999999999999864
No 497
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=90.27 E-value=0.097 Score=46.81 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=11.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 224 TPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 224 ~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
...+|+|+|.+|+||||+..++...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEEECCCCC------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3578999999999999999998754
No 498
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.26 E-value=0.16 Score=52.34 Aligned_cols=27 Identities=22% Similarity=0.188 Sum_probs=23.3
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
-....++.|+|+.||||||+.+.|+.-
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcC
Confidence 455778999999999999999999853
No 499
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.26 E-value=0.16 Score=52.87 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=23.0
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHh
Q psy11031 222 RNTPLVVWVVGGPGSSKSEMCQKVLQ 247 (520)
Q Consensus 222 ~~~p~~I~vlG~PGSGKsT~a~~La~ 247 (520)
-....++.|+||.||||||+.+.|+.
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhC
Confidence 45578899999999999999999985
No 500
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=90.22 E-value=0.16 Score=51.44 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHhh
Q psy11031 223 NTPLVVWVVGGPGSSKSEMCQKVLQD 248 (520)
Q Consensus 223 ~~p~~I~vlG~PGSGKsT~a~~La~k 248 (520)
....+|.++|+||+||||++..|+..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 45688999999999999999999753
Done!