RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11031
(520 letters)
>gnl|CDD|238713 cd01428, ADK, Adenylate kinase (ADK) catalyzes the reversible
phosphoryl transfer from adenosine triphosphates (ATP)
to adenosine monophosphates (AMP) and to yield adenosine
diphosphates (ADP). This enzyme is required for the
biosynthesis of ADP and is essential for homeostasis of
adenosine phosphates.
Length = 194
Score = 86.9 bits (216), Expect = 9e-20
Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 37/194 (19%)
Query: 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGD 286
+ ++G PGS K +++ + Y IS G LLR I E L + K + +G
Sbjct: 1 RILLLGPPGSGKGTQAERLAKKY-GLPHISTGDLLR--EEIASGTE-LGKKAKEYIDSGK 56
Query: 287 FVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPP---MILIDCS 343
V ++V+ ++ +KK G ++DGFPR + Q + +I +D
Sbjct: 57 LVPDEIVIKLLKERLKKPD--CKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVP 114
Query: 344 KLVL-----------------HKGQIDN-----------SVSAFRRRLELFRERTLPMLR 375
VL H G+ D + ++RLE+++E+T P++
Sbjct: 115 DEVLIERILGRRICPVSGRVYHLGKDDVTGEPLSQRSDDNEETIKKRLEVYKEQTAPLID 174
Query: 376 AMDVETRLTIVDGD 389
+ +L +DG
Sbjct: 175 YYKKKGKLVEIDGS 188
Score = 51.1 bits (123), Expect = 2e-07
Identities = 22/137 (16%), Positives = 50/137 (36%), Gaps = 25/137 (18%)
Query: 38 LSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIK---TINGVILIAWRQSL 94
+ + V ++L +K K F++ G+PR + + + + VI + +
Sbjct: 58 VPDEIVIKLLKERLKKPDCKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEV 117
Query: 95 LERQIDYGAK--------------LGHVILSL--------ARMELANFYQNVTPVTDFFD 132
L +I + LS + L + + P+ D++
Sbjct: 118 LIERILGRRICPVSGRVYHLGKDDVTGEPLSQRSDDNEETIKKRLEVYKEQTAPLIDYYK 177
Query: 133 QRGMLIAVNGERNPVEV 149
++G L+ ++G + EV
Sbjct: 178 KKGKLVEIDGSGDIDEV 194
>gnl|CDD|130427 TIGR01360, aden_kin_iso1, adenylate kinase, isozyme 1 subfamily.
Members of this family are adenylate kinase, EC 2.7.4.3.
This clade is found only in eukaryotes and includes
human adenylate kinase isozyme 1 (myokinase). Within the
adenylate kinase superfamily, this set appears
specifically closely related to a subfamily of
eukaryotic UMP-CMP kinases (TIGR01359), rather than to
the large clade of bacterial, archaeal, and eukaryotic
adenylate kinase family members in TIGR01351.
Length = 188
Score = 86.8 bits (215), Expect = 9e-20
Identities = 50/159 (31%), Positives = 89/159 (55%), Gaps = 18/159 (11%)
Query: 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGD 286
++++VGGPGS K C+K+++ Y +T +S G LLR G ++++ + +GD
Sbjct: 5 IIFIVGGPGSGKGTQCEKIVEKY-GFTHLSTGDLLR---AEVASGSERGKQLQAIMESGD 60
Query: 287 FVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILI--DCS- 343
V D VLD++ M T + G +IDG+PRE+ Q +FE + I PP +++ DCS
Sbjct: 61 LVPLDTVLDLLKDAMVAALGT-SKGFLIDGYPREVKQGEEFERR--IGPPTLVLYFDCSE 117
Query: 344 ----KLVLHKGQ----IDNSVSAFRRRLELFRERTLPML 374
K +L + + +D++ ++RLE + + T P++
Sbjct: 118 DTMVKRLLKRAETSGRVDDNEKTIKKRLETYYKATEPVI 156
Score = 49.0 bits (117), Expect = 8e-07
Identities = 30/127 (23%), Positives = 56/127 (44%), Gaps = 4/127 (3%)
Query: 38 LSSKTVTEVLMLEM-KMSPAAKAFLISGYPRNMRDVVEYSDKIKTINGVILI-AWRQSLL 95
+ TV ++L M +K FLI GYPR ++ E+ +I V+ +++
Sbjct: 62 VPLDTVLDLLKDAMVAALGTSKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMV 121
Query: 96 ERQIDYGAKLGHV--ILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADF 153
+R + G V + L +Y+ PV +++ +G L +N E +V+
Sbjct: 122 KRLLKRAETSGRVDDNEKTIKKRLETYYKATEPVIAYYETKGKLRKINAEGTVDDVFLQV 181
Query: 154 RTAVLKI 160
TA+ K+
Sbjct: 182 CTAIDKL 188
>gnl|CDD|215125 PLN02200, PLN02200, adenylate kinase family protein.
Length = 234
Score = 76.1 bits (187), Expect = 1e-15
Identities = 54/202 (26%), Positives = 101/202 (50%), Gaps = 18/202 (8%)
Query: 210 VSEPYRKIKSVERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIED 269
+ + S + TP + +V+GGPGS K C+K+++ + + +S G LLR I
Sbjct: 28 IITLEERGSSSKEKTPFITFVLGGPGSGKGTQCEKIVETF-GFKHLSAGDLLR--REIAS 84
Query: 270 DGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFEN 329
+ E + I +++ G V +V + ++ EM+ + + +IDGFPR I FE
Sbjct: 85 NSEH-GAMILNTIKEGKIVPSEVTVKLIQKEMESSDNNK---FLIDGFPRTEENRIAFER 140
Query: 330 KYQIHPPMIL-IDCS-----KLVLHK--GQIDNSVSAFRRRLELFRERTLPMLRAMDVET 381
P ++L DC K VL++ G++D+++ ++RL++F LP++ +
Sbjct: 141 IIGAEPNVVLFFDCPEEEMVKRVLNRNQGRVDDNIDTIKKRLKVFNALNLPVIDYYSKKG 200
Query: 382 RLTIVDGDTQLPQVREEFERVL 403
+L ++ + V E FE+V
Sbjct: 201 KLYTINA---VGTVDEIFEQVR 219
>gnl|CDD|130426 TIGR01359, UMP_CMP_kin_fam, UMP-CMP kinase family. This subfamily
of the adenylate kinase superfamily contains examples of
UMP-CMP kinase, as well as others proteins with unknown
specificity, some currently designated adenylate kinase.
All known members are eukaryotic.
Length = 183
Score = 73.2 bits (180), Expect = 5e-15
Identities = 49/191 (25%), Positives = 101/191 (52%), Gaps = 21/191 (10%)
Query: 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRY-FANIEDDGEGLNSRIKSSVSAG 285
VV+V+GGPGS K C K+++++ +T +S G LLR + ++GE + S IK+ G
Sbjct: 1 VVFVLGGPGSGKGTQCAKIVENFG-FTHLSAGDLLRAEIKSGSENGELIESMIKN----G 55
Query: 286 DFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFEN--KYQIHPPMIL-IDC 342
V +V + ++ ++ + +IDGFPR L +E +++ +L DC
Sbjct: 56 KIVPSEVTVKLLKNAIQA---DGSKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDC 112
Query: 343 S-----KLVLHKGQ----IDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLP 393
K +L +GQ +D+++ + ++R + E+TLP++ + + ++ ++ + +
Sbjct: 113 PEEVMIKRLLKRGQSSGRVDDNIESIKKRFRTYNEQTLPVIEHYENKGKVKEINAEGSVE 172
Query: 394 QVREEFERVLK 404
+V E+ E++
Sbjct: 173 EVFEDVEKIFA 183
Score = 38.9 bits (91), Expect = 0.002
Identities = 30/128 (23%), Positives = 59/128 (46%), Gaps = 14/128 (10%)
Query: 43 VTEVLMLEMKM-SPAAKAFLISGYPRNMRDVVEY----SDKIKTINGVILIAWRQSLLER 97
VT V +L+ + + +K FLI G+PRN ++ + +K+ + + +++R
Sbjct: 62 VT-VKLLKNAIQADGSKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKR 120
Query: 98 QIDYGAKLGHV---ILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFR 154
+ G G V I S+ + + + PV + ++ +G + +N E + EV+ D
Sbjct: 121 LLKRGQSSGRVDDNIESI-KKRFRTYNEQTLPVIEHYENKGKVKEINAEGSVEEVFED-- 177
Query: 155 TAVLKILN 162
V KI
Sbjct: 178 --VEKIFA 183
>gnl|CDD|223637 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide
transport and metabolism].
Length = 178
Score = 65.8 bits (161), Expect = 2e-12
Identities = 40/185 (21%), Positives = 86/185 (46%), Gaps = 21/185 (11%)
Query: 230 VVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVN 289
++G PG+ KS + +K+ + + G +LR A I + E L IK + G+ V
Sbjct: 5 ILGPPGAGKSTLAKKLAKKLG-LPHLDTGDILR--AAIAERTE-LGEEIKKYIDKGELVP 60
Query: 290 RDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFEN---KYQIHPPMIL-IDCSKL 345
++V +V + + G ++DGFPR + Q + + + M++ +D +
Sbjct: 61 DEIVNGLVKERLDEAD--CKAGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEE 118
Query: 346 VLHK------GQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEF 399
+L + + D++ ++RL+++ E+T P+ +E +DG ++ +V +
Sbjct: 119 LLLERLLGRRVREDDNEETVKKRLKVYHEQTAPL-----IEYYSVTIDGSGEIEEVLADI 173
Query: 400 ERVLK 404
+ L
Sbjct: 174 LKALS 178
>gnl|CDD|233369 TIGR01351, adk, adenylate kinase. Adenylate kinase (EC 2.7.4.3)
converts ATP + AMP to ADP + ADP, that is, uses ATP as a
phosphate donor for AMP. Most members of this family are
known or believed to be adenylate kinase. However, some
members accept other nucleotide triphosphates as donors,
may be unable to use ATP, and may fail to complement
adenylate kinase mutants. An example of a
nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10)
is a GTP:AMP phosphotransferase. This family is
designated subfamily rather than equivalog for this
reason [Purines, pyrimidines, nucleosides, and
nucleotides, Nucleotide and nucleoside
interconversions].
Length = 210
Score = 66.1 bits (162), Expect = 2e-12
Identities = 46/210 (21%), Positives = 83/210 (39%), Gaps = 42/210 (20%)
Query: 232 GGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRD 291
G PGS K +++ + Y IS G LLR A I+ L + K + G+ V +
Sbjct: 6 GPPGSGKGTQAKRIAEKY-GLPHISTGDLLR--AEIKAGTP-LGKKAKEYMEKGELVPDE 61
Query: 292 VVLDIVYAEMKKTKYTEADGIVIDGFPREMSQL------------------IDFE----- 328
+V +V + + + E +G ++DGFPR +SQ + E
Sbjct: 62 IVNQLVKERLTQNQDNE-NGFILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVER 120
Query: 329 --------------NKYQIHPPMILIDCSKLVLHKGQIDNSVSAFRRRLELFRERTLPML 374
+ P + D L + D++ ++RLE+++E+T P++
Sbjct: 121 LSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQREDDTEEVVKKRLEVYKEQTEPLI 180
Query: 375 RAMDVETRLTIVDGDTQLPQVREEFERVLK 404
L +DG+ + +V + LK
Sbjct: 181 DYYKKRGILVQIDGNGPIDEVWKRILEALK 210
Score = 35.3 bits (82), Expect = 0.046
Identities = 11/46 (23%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 112 LARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAV 157
R+E+ + + P+ D++ +RG+L+ ++G EV+ A+
Sbjct: 166 KKRLEV--YKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRILEAL 209
>gnl|CDD|201213 pfam00406, ADK, Adenylate kinase.
Length = 186
Score = 64.2 bits (157), Expect = 5e-12
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 6/99 (6%)
Query: 230 VVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVN 289
++G PG+ K ++++Q Y +S G LLR A ++ E L K + G+ V
Sbjct: 1 LLGPPGAGKGTQAERIVQKY-GIPHLSTGDLLR--AEVKSGTE-LGKEAKEYMDKGELVP 56
Query: 290 RDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFE 328
+VV+ +V +++ +G ++DGFPR + Q E
Sbjct: 57 DEVVIGLVKERLEQN--DCKNGFLLDGFPRTVPQAEALE 93
>gnl|CDD|179433 PRK02496, adk, adenylate kinase; Provisional.
Length = 184
Score = 60.9 bits (148), Expect = 7e-11
Identities = 46/185 (24%), Positives = 88/185 (47%), Gaps = 21/185 (11%)
Query: 232 GGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRD 291
G PG+ K + + + IS G +LR I++ L + + + G+ V
Sbjct: 8 GPPGAGKGTQAVVLAEHL-HIPHISTGDILR--QAIKEQTP-LGIKAQGYMDKGELVPDQ 63
Query: 292 VVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQ-IH-----------PPMIL 339
+VLD+V +++ A+G ++DGFPR+++Q + Q I P ++
Sbjct: 64 LVLDLVQERLQQPD--AANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVV 121
Query: 340 IDCSKLVLHKGQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEF 399
++ +L +G+ D++ RRRLE++RE+T P++ +L +DG+ + V E
Sbjct: 122 VE---RLLARGRKDDTEEVIRRRLEVYREQTAPLIDYYRDRQKLLTIDGNQSVEAVTTEL 178
Query: 400 ERVLK 404
+ L
Sbjct: 179 KAALA 183
Score = 31.6 bits (72), Expect = 0.57
Identities = 23/114 (20%), Positives = 49/114 (42%), Gaps = 11/114 (9%)
Query: 51 MKMSPAAKAFLISGYPRNMRDVVEYSDKIKTING-----VILIAWRQSLLERQIDYGAK- 104
++ AA +++ G+PR + + ++ I V L ++ER + G K
Sbjct: 73 LQQPDAANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGRKD 132
Query: 105 -LGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAV 157
VI R L + + P+ D++ R L+ ++G ++ V + + A+
Sbjct: 133 DTEEVI----RRRLEVYREQTAPLIDYYRDRQKLLTIDGNQSVEAVTTELKAAL 182
>gnl|CDD|184729 PRK14532, PRK14532, adenylate kinase; Provisional.
Length = 188
Score = 57.9 bits (140), Expect = 9e-10
Identities = 44/186 (23%), Positives = 85/186 (45%), Gaps = 19/186 (10%)
Query: 232 GGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRD 291
G P + K ++++++ Q+S G +LR A I G L R+K + G+ V+ +
Sbjct: 7 GPPAAGKGTQAKRLVEER-GMVQLSTGDMLR--AAIAS-GSELGQRVKGIMDRGELVSDE 62
Query: 292 VVLDIVYAEMKKTKYTEADGIVIDGFPREMSQL-------------IDFENKYQIHPPMI 338
+V+ ++ E + + A G + DGFPR ++Q ID + ++ +
Sbjct: 63 IVIALI--EERLPEAEAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEAL 120
Query: 339 LIDCSKLVLHKGQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREE 398
+ K +G+ D++ F RL+ + +T P+L + +LT VDG + V
Sbjct: 121 IERIVKRFEEQGRPDDNPEVFVTRLDAYNAQTAPLLPYYAGQGKLTEVDGMGSIEAVAAS 180
Query: 399 FERVLK 404
+ L+
Sbjct: 181 IDAALE 186
>gnl|CDD|172997 PRK14531, PRK14531, adenylate kinase; Provisional.
Length = 183
Score = 54.4 bits (131), Expect = 1e-08
Identities = 50/183 (27%), Positives = 90/183 (49%), Gaps = 18/183 (9%)
Query: 231 VGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNR 290
+G PG+ K + L +S G LLR G L ++ ++ G+ V+
Sbjct: 8 LGPPGAGKGTQAAR-LCAAHGLRHLSTGDLLRSEVAA---GSALGQEAEAVMNRGELVSD 63
Query: 291 DVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ------LIDFENKYQIHPPMIL-IDCS 343
+VL IV +++K + G ++DGFPR ++Q L++ E K I ++L +D +
Sbjct: 64 ALVLAIVESQLKAL---NSGGWLLDGFPRTVAQAEALEPLLE-ELKQPIEAVVLLELDDA 119
Query: 344 KLV---LHKGQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFE 400
L+ L +G+ D++ + R RLE++RE+T P++ L V+ + + E E
Sbjct: 120 VLIERLLARGRADDNEAVIRNRLEVYREKTAPLIDHYRQRGLLQSVEAQGSIEAITERIE 179
Query: 401 RVL 403
+VL
Sbjct: 180 KVL 182
>gnl|CDD|237745 PRK14527, PRK14527, adenylate kinase; Provisional.
Length = 191
Score = 49.8 bits (119), Expect = 5e-07
Identities = 49/196 (25%), Positives = 91/196 (46%), Gaps = 25/196 (12%)
Query: 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLR-YFANIEDDGEGLNSRIKSS 281
VV +G PG+ K +++ Q+ ++S G +LR + A G L R K
Sbjct: 4 TKNKVVIFLGPPGAGKGTQAERLAQEL-GLKKLSTGDILRDHVAR----GTELGQRAKPI 58
Query: 282 VSAGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ------LIDFENKYQIHP 335
+ AGD V +++L ++ E+ E ++ DGFPR ++Q L++ +
Sbjct: 59 MEAGDLVPDELILALIRDELAGM---EPVRVIFDGFPRTLAQAEALDRLLEELGARLLAV 115
Query: 336 PMILIDCSKLV-------LHKGQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDG 388
++ + +L+ +G+ D++ RRR +++RE+T P++ + L VDG
Sbjct: 116 VLLEVPDEELIRRIVERARQEGRSDDNEETVRRRQQVYREQTQPLVDYYEARGHLKRVDG 175
Query: 389 DTQLPQVREEFERVLK 404
L E + R+LK
Sbjct: 176 ---LGTPDEVYARILK 188
Score = 30.5 bits (69), Expect = 1.6
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 81 TINGVILI-AWRQSLLERQIDYGAKLGHV--ILSLARMELANFYQNVTPVTDFFDQRGML 137
+ V+L+ + L+ R ++ + G R + + P+ D+++ RG L
Sbjct: 111 RLLAVVLLEVPDEELIRRIVERARQEGRSDDNEETVRRRQQVYREQTQPLVDYYEARGHL 170
Query: 138 IAVNGERNPVEVYADFRTAV 157
V+G P EVYA A+
Sbjct: 171 KRVDGLGTPDEVYARILKAL 190
>gnl|CDD|234711 PRK00279, adk, adenylate kinase; Reviewed.
Length = 215
Score = 46.7 bits (112), Expect = 7e-06
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 12/96 (12%)
Query: 231 VGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNR 290
+G PG+ K + + + Y IS G +LR A ++ E L KS + AG+ V
Sbjct: 6 LGPPGAGKGTQAKFIAEKY-GIPHISTGDMLR--AAVKAGTE-LGKEAKSYMDAGELVPD 61
Query: 291 DVVLDIVYAEMKKTKYTEAD---GIVIDGFPREMSQ 323
++V+ +V K + + D G ++DGFPR + Q
Sbjct: 62 EIVIGLV-----KERLAQPDCKNGFLLDGFPRTIPQ 92
Score = 32.0 bits (74), Expect = 0.57
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 8/52 (15%)
Query: 114 RMELANFYQNVT-PVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLKILNKN 164
R+E+ Y T P+ D++ ++G L ++G + EV+AD +LK L K
Sbjct: 171 RLEV---YHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFAD----ILKALGKL 215
Score = 29.3 bits (67), Expect = 3.9
Identities = 13/54 (24%), Positives = 30/54 (55%)
Query: 353 DNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKI 406
D++ R+RLE++ ++T P++ + +L +DG + +V + + L K+
Sbjct: 162 DDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALGKL 215
>gnl|CDD|178435 PLN02842, PLN02842, nucleotide kinase.
Length = 505
Score = 47.9 bits (114), Expect = 8e-06
Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 14/136 (10%)
Query: 230 VVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVN 289
+ G P S K C+ ++ + IS G LLR + D + R K +++G V
Sbjct: 2 ISGAPASGKGTQCELIVHKF-GLVHISTGDLLRAEVSAGTD---IGKRAKEFMNSGRLVP 57
Query: 290 RDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPM-ILIDCSKLVLH 348
++V+ +V + + E G ++DG+PR +Q E K +I P + IL+D +L
Sbjct: 58 DEIVIAMVTGRLSREDAKEK-GWLLDGYPRSFAQAQSLE-KLKIRPDIFILLDVPDEIL- 114
Query: 349 KGQIDNSVSAFRRRLE 364
ID V RRL+
Sbjct: 115 ---IDRCVG---RRLD 124
>gnl|CDD|172994 PRK14528, PRK14528, adenylate kinase; Provisional.
Length = 186
Score = 45.4 bits (107), Expect = 2e-05
Identities = 48/189 (25%), Positives = 84/189 (44%), Gaps = 25/189 (13%)
Query: 231 VGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNR 290
+G PG+ K K+L + + QIS G +LR + + K + AGD V
Sbjct: 7 MGPPGAGKGTQA-KILCERLSIPQISTGDILREAVK---NQTAMGIEAKRYMDAGDLVPD 62
Query: 291 DVVLDIVYAEMKKTKYTEAD---GIVIDGFPREMSQL-------------IDFENKYQIH 334
VV+ I+ K + EAD G ++DGFPR + Q ID ++
Sbjct: 63 SVVIGII-----KDRIREADCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVP 117
Query: 335 PPMILIDCSKLVLHKGQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQ 394
+L +G+ D++ + + RL+ + ++TLP+L + +L+ V+G L +
Sbjct: 118 DGELLKRLLGRAEIEGRADDNEATIKNRLDNYNKKTLPLLDFYAAQKKLSQVNGVGSLEE 177
Query: 395 VREEFERVL 403
V ++ L
Sbjct: 178 VTSLIQKEL 186
>gnl|CDD|237747 PRK14530, PRK14530, adenylate kinase; Provisional.
Length = 215
Score = 44.4 bits (105), Expect = 4e-05
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 33/132 (25%)
Query: 57 AKAFLISGYPRNMRDVVEYSDKIKTINGVILI-AWRQSLLERQI------DYGAKLGHVI 109
A F++ GYPRN+ + EY + I ++ V+ + + L++R D GA HV
Sbjct: 82 ADGFVLDGYPRNL-EQAEYLESITDLDVVLYLDVSEEELVDRLTGRRVCPDCGANY-HVE 139
Query: 110 LSL------------------------ARMELANFYQNVTPVTDFFDQRGMLIAVNGERN 145
+ R L F +N PV + + +G+L+ V+GE+
Sbjct: 140 FNQPEEEGVCDECGGELIQRDDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQT 199
Query: 146 PVEVYADFRTAV 157
P EV+AD + A+
Sbjct: 200 PDEVWADIQDAI 211
Score = 38.2 bits (89), Expect = 0.005
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 11/99 (11%)
Query: 228 VWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRI---KSSVSA 284
+ ++G PG+ K + +++ ++ G LR AN + D +++ + A
Sbjct: 6 ILLLGAPGAGKGTQSSNLAEEF-GVEHVTTGDALR--ANKQMDISDMDTEYDTPGEYMDA 62
Query: 285 GDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
G+ V VV +IV + ++ADG V+DG+PR + Q
Sbjct: 63 GELVPDAVVNEIV-----EEALSDADGFVLDGYPRNLEQ 96
>gnl|CDD|172992 PRK14526, PRK14526, adenylate kinase; Provisional.
Length = 211
Score = 44.5 bits (105), Expect = 4e-05
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 231 VGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNR 290
+G PGS K + K+L + N+ IS G L R NI + L IK V G V
Sbjct: 6 LGPPGSGKGTI-AKILSNELNYYHISTGDLFR--ENILNS-TPLGKEIKQIVENGQLVPD 61
Query: 291 DVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
+ + IV ++ K D ++DGFPR ++Q
Sbjct: 62 SITIKIVEDKINTIK--NNDNFILDGFPRNINQ 92
>gnl|CDD|240262 PTZ00088, PTZ00088, adenylate kinase 1; Provisional.
Length = 229
Score = 44.0 bits (104), Expect = 6e-05
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Query: 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSA 284
PL + + G PG K + + + N I++G +LR + + I+ V++
Sbjct: 6 PLKIVLFGAPGVGKGTFAEILSKKE-NLKHINMGNILREEIKAKTT---IGKEIQKVVTS 61
Query: 285 GDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ---LIDFEN 329
G+ V ++V+ IV E+ K G ++DGFPR + Q L N
Sbjct: 62 GNLVPDNLVIAIVKDEIAKVTDDCFKGFILDGFPRNLKQCKELGKITN 109
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional.
Length = 333
Score = 39.9 bits (93), Expect = 0.002
Identities = 48/196 (24%), Positives = 90/196 (45%), Gaps = 25/196 (12%)
Query: 230 VVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVN 289
++G PG+ K Q+++Q Y Q+S G +LR A GL + K +++G V
Sbjct: 5 LLGPPGAGKGTQAQRLVQQY-GIVQLSTGDMLRA-AVAAGTPVGLKA--KDIMASGGLVP 60
Query: 290 RDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQL-------------IDFENKYQIHPP 336
+VV+ I+ +++ A+G ++DGFPR + Q +D + +++
Sbjct: 61 DEVVVGIISDRIEQPD--AANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEG 118
Query: 337 MILIDCSKLVLH---KGQ---IDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDT 390
+L V +G+ D++ +RL +R +T P++ + +L VDG
Sbjct: 119 ALLARVETRVAEMRARGEEVRADDTPEVLAKRLASYRAQTEPLVHYYSEKRKLLTVDGMM 178
Query: 391 QLPQVREEFERVLKKI 406
+ +V E RVL +
Sbjct: 179 TIDEVTREIGRVLAAV 194
>gnl|CDD|221983 pfam13207, AAA_17, AAA domain.
Length = 114
Score = 36.9 bits (85), Expect = 0.004
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 5/98 (5%)
Query: 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGD 286
++ + G PGS KS + +K L + ISL LLR E D L+ +
Sbjct: 1 IILITGPPGSGKSTLAKK-LAEKLGIPVISLDDLLREEGLAELDDGELDDIDIDLELLEE 59
Query: 287 FVNR----DVVLDIVYAEMKKTKYTEADGIVIDGFPRE 320
++ + V+D V + + EAD +V P
Sbjct: 60 ILDELAKQEWVIDGVRESTLELRLEEADLVVFLDLPLP 97
>gnl|CDD|178279 PLN02674, PLN02674, adenylate kinase.
Length = 244
Score = 37.6 bits (87), Expect = 0.011
Identities = 29/115 (25%), Positives = 58/115 (50%), Gaps = 7/115 (6%)
Query: 209 VVSEPYRKIKSVERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIE 268
+++E R++K + ++ ++G PGS K +++D ++ G +LR +
Sbjct: 16 LMTELLRRMKCSSKPDKRLI-LIGPPGSGKGTQ-SPIIKDEYCLCHLATGDMLRAAVAAK 73
Query: 269 DDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
L + K ++ G+ V+ D+V+ I+ MKK + G ++DGFPR + Q
Sbjct: 74 TP---LGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQK--GFILDGFPRTVVQ 123
Score = 30.6 bits (69), Expect = 1.4
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
Query: 92 QSLLERQIDYGAKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYA 151
+ L++R+ D A L + L F++ PV D++ ++G++ ++ E+ P EV A
Sbjct: 186 EPLIQRKDDTAAVL--------KSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVTA 237
Query: 152 DFRTAV 157
+ + A+
Sbjct: 238 EVQKAL 243
>gnl|CDD|222000 pfam13238, AAA_18, AAA domain.
Length = 128
Score = 34.3 bits (79), Expect = 0.036
Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 16/122 (13%)
Query: 228 VWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDF 287
+ + G PGS K+ + +++ + LG +LR A L+ I D
Sbjct: 1 ILITGTPGSGKTTLAKELAE--------RLGDVLRDLAKENGLVLELDEEITDESKRLDE 52
Query: 288 VNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVL 347
+LD + E + E + ++IDG + E + +++ L
Sbjct: 53 DKLAKLLDKL--EKIIEELAEGENVIIDGHLA------ELELERFKDLVFVVLRADPEEL 104
Query: 348 HK 349
+
Sbjct: 105 LE 106
>gnl|CDD|215253 PLN02459, PLN02459, probable adenylate kinase.
Length = 261
Score = 34.4 bits (79), Expect = 0.10
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 9/100 (9%)
Query: 227 VVWV-VGGPGSSKSEMCQKV--LQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS 283
V WV +G PG K ++ L P+ I+ G L+R I+ G L +++K V+
Sbjct: 30 VNWVFLGCPGVGKGTYASRLSKLLGVPH---IATGDLVR--EEIKSSGP-LGAQLKEIVN 83
Query: 284 AGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
G V +++ ++ ++ + G ++DGFPR + Q
Sbjct: 84 QGKLVPDEIIFSLLSKRLEAGEEEGESGFILDGFPRTVRQ 123
>gnl|CDD|204138 pfam09107, SelB-wing_3, Elongation factor SelB, winged helix.
Members of this family adopt a winged-helix fold, with
an alpha/beta structure consisting of three
alpha-helices and a twisted three-stranded antiparallel
beta-sheet, with an alpha-beta-alpha-alpha-beta-beta
connectivity. They are involved in both DNA and RNA
binding.
Length = 49
Score = 29.0 bits (66), Expect = 0.58
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 355 SVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDT 390
+V+ FR L L R+ +P+L D T GD
Sbjct: 12 TVAEFRDALGLSRKYAIPLLEYFD-RLGFTRRVGDK 46
>gnl|CDD|129479 TIGR00383, corA, magnesium Mg(2+) and cobalt Co(2+) transport
protein (corA). The article in Microb Comp Genomics
1998;3(3):151-69 (Medline:98448512) discusses this
family and suggests that some members may have functions
other than Mg2+ transport [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 318
Score = 31.2 bits (71), Expect = 1.3
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
Query: 348 HKGQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKII 407
+ + + + R L R P+ ++ R T + Q +VRE + I+
Sbjct: 169 PTSTLMDEILSLRTELLALRRSLWPLRDVLNFLLRKTHLPI--QTEEVREYLRDIYDHIL 226
Query: 408 DDLENTARPRDKRN 421
LE R+ +
Sbjct: 227 SLLEMIETYRELLS 240
>gnl|CDD|189778 pfam00938, Lipoprotein_3, Lipoprotein. This family of
lipoproteins is Mycoplasma specific.
Length = 87
Score = 29.0 bits (65), Expect = 1.7
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 76 SDKIKTINGVILIAWRQSLLERQI 99
S+ KT N ++L AW+QSL + +I
Sbjct: 41 SNPKKTTN-LLLDAWKQSLEDGKI 63
>gnl|CDD|223327 COG0249, MutS, Mismatch repair ATPase (MutS family) [DNA
replication, recombination, and repair].
Length = 843
Score = 31.1 bits (71), Expect = 1.8
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 12/76 (15%)
Query: 352 IDNSVSAFRRRLELFRERTL-PMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDDL 410
+D +V+ RL + L P+L ++E RL V+ P++RE+ +LKK+ DL
Sbjct: 289 LDRTVTPMGSRL--LKRWLLQPLLDKEEIEERLDAVEELKDNPELREKLREMLKKVP-DL 345
Query: 411 E--------NTARPRD 418
E A PRD
Sbjct: 346 ERLLSRLSLGRASPRD 361
>gnl|CDD|237746 PRK14529, PRK14529, adenylate kinase; Provisional.
Length = 223
Score = 30.1 bits (68), Expect = 2.4
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 233 GP-GSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRD 291
GP GS K V + Y + I G + R +I G L + K + GD V D
Sbjct: 7 GPNGSGKGTQGALVKKKY-DLAHIESGAIFR--EHI-GGGTELGKKAKEYIDRGDLVPDD 62
Query: 292 VVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
+ + ++ +K+ +G ++DGFPR Q
Sbjct: 63 ITIPMILETLKQD---GKNGWLLDGFPRNKVQ 91
>gnl|CDD|173193 PRK14731, coaE, dephospho-CoA kinase; Provisional.
Length = 208
Score = 29.6 bits (67), Expect = 2.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 221 ERNTPLVVWVVGGPGSSKSEMC 242
R+ P +V V GG GS KS +C
Sbjct: 1 MRSLPFLVGVTGGIGSGKSTVC 22
>gnl|CDD|206307 pfam14138, COX16, Cytochrome c oxidase assembly protein COX16.
This family represents homologues of COX16 which has
been shown to be involved in assembly of cytochrome
oxidase. Protein in this family are typically between
106 and 134 amino acids in length.
Length = 79
Score = 27.1 bits (61), Expect = 4.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 395 VREEFERVLKKIIDDLENTARPRDK 419
+ EE+ R+ IDD EN PR K
Sbjct: 53 LEEEYYRLQGLDIDDWENVRVPRPK 77
>gnl|CDD|152164 pfam11728, DUF939_C, DUF939 C-terminal domain. This region is a
presumed intracellular domain found in a set of
bacterial presumed transporter proteins. The region is
about 160 amino acids in length.
Length = 167
Score = 28.7 bits (65), Expect = 5.4
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 23/63 (36%)
Query: 353 DNSVSAFRRRLELFRE--RTLPMLRAMDVETRLTIVDGDTQLPQVREEFER--VLKKIID 408
DN+ + RLE RE R +P LP+ REEFE L + ++
Sbjct: 116 DNTAALLLERLEEMREEFREMP-------------------LPKTREEFENRAALFQFLN 156
Query: 409 DLE 411
+LE
Sbjct: 157 ELE 159
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional.
Length = 1355
Score = 29.7 bits (66), Expect = 5.5
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 443 EPVNIPNGFGPPRENRTVTTLFTKPQDPVAPYTKDQ--QDPVSRNVPYMKDQQDP 495
+PV + P++ + +PQ PVAP + Q Q PV+ Y + QQ
Sbjct: 783 QPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPV 837
>gnl|CDD|115072 pfam06391, MAT1, CDK-activating kinase assembly factor MAT1. MAT1
is an assembly/targeting factor for cyclin-dependent
kinase-activating kinase (CAK), which interacts with the
transcription factor TFIIH. The domain found to the
N-terminal side of this domain is a C3HC4 RING finger.
Length = 200
Score = 28.6 bits (64), Expect = 6.0
Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 6/86 (6%)
Query: 347 LHKGQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKI 406
+K I + R E + L + M E RL + + Q ++ +E + ++I
Sbjct: 76 ENKDSIMRNKRRLTREQEELEQA-LEEEKEMKEEKRLHLQK-EEQEQKMAKE--KDKQEI 131
Query: 407 IDDLENTARPRDK--RNHTALSLDND 430
ID+LE + P + H S +
Sbjct: 132 IDELETSNLPANVIIAQHKKQSKQLE 157
>gnl|CDD|222104 pfam13401, AAA_22, AAA domain.
Length = 124
Score = 28.0 bits (63), Expect = 6.5
Identities = 7/34 (20%), Positives = 16/34 (47%)
Query: 222 RNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI 255
R + + G GS K+ + +++ + PN +
Sbjct: 1 RRGAGIGVLTGESGSGKTTLLRRLARQLPNRRVV 34
>gnl|CDD|130127 TIGR01055, parE_Gneg, DNA topoisomerase IV, B subunit,
proteobacterial. Operationally, topoisomerase IV is a
type II topoisomerase required for the decatenation of
chromosome segregation. Not every bacterium has both a
topo II and a topo IV. The topo IV families of the
Gram-positive bacteria and the Gram-negative bacteria
appear not to represent a single clade among the type II
topoisomerases, and are represented by separate models
for this reason. This protein is active as an
alpha(2)beta(2) heterotetramer [DNA metabolism, DNA
replication, recombination, and repair].
Length = 625
Score = 28.7 bits (64), Expect = 7.9
Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 27/122 (22%)
Query: 317 FPREMSQLIDFENKYQIHPPMILIDCSKLVLH------KGQIDNSVSAFRRRLELFRERT 370
F +L++ + Y PP+ ID SK V + K ++ + + + + R +
Sbjct: 505 FFLHFPKLVEEGHVYVAKPPLYRIDLSKEVYYALDEEEKEKLLYKLKKKKGKPNVQRFKG 564
Query: 371 L----PM-LR--AMDVETR----LTIVDGDTQLPQVREEFERVLKKIIDDLENTARPRDK 419
L P LR MD TR LT+ D Q + KI+D L R D+
Sbjct: 565 LGEMNPAQLRETTMDPNTRRLVQLTLDDVQDQR----------VDKIMDMLLAKKRSEDR 614
Query: 420 RN 421
N
Sbjct: 615 FN 616
>gnl|CDD|233018 TIGR00551, nadB, L-aspartate oxidase. L-aspartate oxidase is the B
protein, NadB, of the quinolinate synthetase complex.
Quinolinate synthetase makes a precursor of the pyridine
nucleotide portion of NAD. This model identifies
proteins that cluster as L-aspartate oxidase (a
flavoprotein difficult to separate from the set of
closely related flavoprotein subunits of succinate
dehydrogenase and fumarate reductase) by both UPGMA and
neighbor-joining trees. The most distant protein
accepted as an L-aspartate oxidase (NadB), that from
Pyrococcus horikoshii, not only clusters with other NadB
but is just one gene away from NadA [Biosynthesis of
cofactors, prosthetic groups, and carriers, Pyridine
nucleotides].
Length = 488
Score = 29.0 bits (65), Expect = 8.0
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 12/61 (19%)
Query: 285 GDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSK 344
G+ RD+V + EMK+ AD + +D E F ++ P I C
Sbjct: 266 GELAPRDIVARAIDHEMKRGG---ADCVFLDASGIE-----AFRQRF----PTIYAKCLG 313
Query: 345 L 345
Sbjct: 314 A 314
>gnl|CDD|213647 TIGR01727, oligo_HPY, oligopeptide/dipeptide ABC transporter,
ATP-binding protein, C-terminal domain. This model
represents a domain found in the C-terminal regions of
oligopeptide ABC transporter ATP binding proteins,
immediately following the ATP-binding domain
(pfam00005). All characterized members appear able to be
involved in the transport of oligopeptides or
dipeptides. Some are important for sporulation or
antibiotic resistance. Some dipeptide transporters also
act on the heme precursor delta-aminolevulinic acid
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 87
Score = 26.9 bits (60), Expect = 8.2
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 7/56 (12%)
Query: 456 ENRTVTTLFTKPQDPVAPYTKDQQDPVSRNVPYMKDQQDPVNTISRNVPMTREMPE 511
E +F P P YTK + +P +K + + +I VP +P
Sbjct: 4 ETGPAEEIFKNPLHP---YTK----ALLSAIPTIKKRDRKLISIPGEVPSLINLPS 52
>gnl|CDD|235281 PRK04328, PRK04328, hypothetical protein; Provisional.
Length = 249
Score = 28.5 bits (64), Expect = 8.5
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Query: 221 ERNTPLVVWVVGGPGSSKSEMCQKVL 246
ERN VV + GGPG+ KS Q+ L
Sbjct: 22 ERN---VVLLSGGPGTGKSIFSQQFL 44
>gnl|CDD|116027 pfam07405, DUF1506, Protein of unknown function (DUF1506). This
family consists of several bacterial proteins of around
130 residues in length. Members of this family seem to
be specific to Borrelia burgdorferi (Lyme disease
spirochete). The function of this family is unknown.
Length = 133
Score = 27.7 bits (61), Expect = 8.6
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 303 KTKYTEADGIVIDGFPREMSQLID 326
K KYTE G++ID P+E++ L D
Sbjct: 53 KNKYTEFAGVIIDIKPQELAILYD 76
>gnl|CDD|227205 COG4868, COG4868, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 493
Score = 28.7 bits (64), Expect = 8.8
Identities = 41/174 (23%), Positives = 70/174 (40%), Gaps = 24/174 (13%)
Query: 91 RQSLLERQIDYGAKL-----GHVILSL-ARMELANFYQN--VTPVTDFFDQRGMLIAVNG 142
+LER + KL G ++ L A L F + + + + DQ ++IA+N
Sbjct: 15 SDHILERINQFDGKLYLEFGGKLLEDLHAARVLPGFEPDNKIKLLNELKDQVEIVIAINA 74
Query: 143 ---ERNPVEVYADFRTA----VLKI---LNKNNVVPGSKPLVNGNAIPVPETLPPQVQ-- 190
ER+ + D + V ++ + ++ GS + P + +++
Sbjct: 75 GDIERS--KARGDLGISYDQDVFRLIDKFRELDIKVGSVVITQYEDQPAADAFRTRLERN 132
Query: 191 SIAATVHSPPKHF-TRPNGVVS-EPYRKIKSVERNTPLVVWVVGGPGSSKSEMC 242
I +H P K + T + +VS E K +E LVV GPGS K C
Sbjct: 133 GIKVYLHYPIKGYPTDVDHIVSDEGMGKNAYIETTRNLVVVTAPGPGSGKLATC 186
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.394
Gapped
Lambda K H
0.267 0.0816 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 27,147,321
Number of extensions: 2700015
Number of successful extensions: 2518
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2489
Number of HSP's successfully gapped: 73
Length of query: 520
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 419
Effective length of database: 6,457,848
Effective search space: 2705838312
Effective search space used: 2705838312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.1 bits)