RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11031
(520 letters)
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces
cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Length = 203
Score = 106 bits (266), Expect = 1e-26
Identities = 45/206 (21%), Positives = 99/206 (48%), Gaps = 12/206 (5%)
Query: 211 SEPYRKIKSVERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDD 270
+ + + V++V+GGPG+ K C+K+++DY ++ +S G LLR A
Sbjct: 1 TAATTSQPAFSPDQVSVIFVLGGPGAGKGTQCEKLVKDY-SFVHLSAGDLLR--AEQGRA 57
Query: 271 GEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENK 330
G IK+ + G V +++ L ++ + +IDGFPR+M Q I FE
Sbjct: 58 GSQYGELIKNCIKEGQIVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERD 117
Query: 331 YQIHPPMILIDCSKLVLHK---------GQIDNSVSAFRRRLELFRERTLPMLRAMDVET 381
++ DC + ++ + G+ D+++ + ++R F+E ++P++ + ++
Sbjct: 118 IVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKS 177
Query: 382 RLTIVDGDTQLPQVREEFERVLKKII 407
++ V D + V ++ + ++ +
Sbjct: 178 KVVRVRCDRSVEDVYKDVQDAIRDSL 203
Score = 45.7 bits (109), Expect = 8e-06
Identities = 30/132 (22%), Positives = 50/132 (37%), Gaps = 29/132 (21%)
Query: 48 MLEMKMSPAAKA----FLISGYPRNMRDVVEYSDKIKTINGVILI-----AWRQSLLERQ 98
+L +S KA FLI G+PR M + + I ++ + LLER
Sbjct: 83 LLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERG 142
Query: 99 IDYG---------AKLGHVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEV 149
G K R F + PV ++F+ + ++ V +R+ +V
Sbjct: 143 KTSGRSDDNIESIKK---------RFNT--FKETSMPVIEYFETKSKVVRVRCDRSVEDV 191
Query: 150 YADFRTAVLKIL 161
Y D + A+ L
Sbjct: 192 YKDVQDAIRDSL 203
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET:
AMP; 2.3A {Homo sapiens}
Length = 199
Score = 104 bits (261), Expect = 5e-26
Identities = 47/196 (23%), Positives = 94/196 (47%), Gaps = 18/196 (9%)
Query: 223 NTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSV 282
+++++GGPGS K C+K+++ Y +T +S G+LLR + + E + I+ +
Sbjct: 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY-GFTHLSTGELLR--EELASESE-RSKLIRDIM 65
Query: 283 SAGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPP--MILI 340
GD V +VL+++ M + G +IDG+PRE+ Q +F +I P +I +
Sbjct: 66 ERGDLVPSGIVLELLKEAMVA-SLGDTRGFLIDGYPREVKQGEEFGR--RIGDPQLVICM 122
Query: 341 DCSKLVLHK---------GQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQ 391
DCS + +D++ +RLE + ++P++ + +T+L ++ +
Sbjct: 123 DCSADTMTNRLLQMSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYETKTQLHKINAEGT 182
Query: 392 LPQVREEFERVLKKII 407
V + + I
Sbjct: 183 PEDVFLQLCTAIDSIF 198
Score = 52.5 bits (127), Expect = 4e-08
Identities = 27/124 (21%), Positives = 48/124 (38%), Gaps = 14/124 (11%)
Query: 48 MLEMKMS---PAAKAFLISGYPRNMRDVVEYSDKIKTINGVILI-AWRQSLLERQIDYGA 103
+L+ M + FLI GYPR ++ E+ +I VI + ++ R +
Sbjct: 79 LLKEAMVASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSR 138
Query: 104 KLGH------VILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAV 157
I L +Y+ PV +++ + L +N E P +V+ TA+
Sbjct: 139 SSLPVDDTTKTI----AKRLEAYYRASIPVIAYYETKTQLHKINAEGTPEDVFLQLCTAI 194
Query: 158 LKIL 161
I
Sbjct: 195 DSIF 198
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate
kinase); nucleoside monophosphate kinase, NMP kinase;
HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP:
c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Length = 194
Score = 102 bits (257), Expect = 1e-25
Identities = 41/199 (20%), Positives = 90/199 (45%), Gaps = 19/199 (9%)
Query: 220 VERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIK 279
+E++ P VV+V+GGPGS K C +++D+ W +S G LLR + + I
Sbjct: 1 MEKSKPNVVFVLGGPGSGKGTQCANIVRDF-GWVHLSAGDLLR--QEQQSGSK-DGEMIA 56
Query: 280 SSVSAGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPP--- 336
+ + G+ V V + ++ + + ++DGFPR +E +
Sbjct: 57 TMIKNGEIVPSIVTVKLLKNAIDANQ---GKNFLVDGFPRNEENNNSWEENMKDFVDTKF 113
Query: 337 MILIDCSKLVLHK---------GQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVD 387
++ DC + V+ + G+ D+++ + ++R F +T ++ + ++ I+
Sbjct: 114 VLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIP 173
Query: 388 GDTQLPQVREEFERVLKKI 406
+ + +V + E + K +
Sbjct: 174 ANRDVNEVYNDVENLFKSM 192
Score = 44.4 bits (106), Expect = 2e-05
Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 15/124 (12%)
Query: 48 MLEMKMS-PAAKAFLISGYPRNMRDVVEYSDKIKT---INGVILI-AWRQSLLERQIDYG 102
+L+ + K FL+ G+PRN + + + +K V+ + + +R + G
Sbjct: 73 LLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRG 132
Query: 103 AKLG------HVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTA 156
G I R F V D +++ + + R+ EVY D
Sbjct: 133 ESSGRSDDNIESIKK--RFNT--FNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENL 188
Query: 157 VLKI 160
+
Sbjct: 189 FKSM 192
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase,
transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens}
PDB: 1z83_A* 3adk_A
Length = 196
Score = 102 bits (256), Expect = 3e-25
Identities = 48/195 (24%), Positives = 94/195 (48%), Gaps = 18/195 (9%)
Query: 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSA 284
+++VVGGPGS K C+K++Q Y +T +S G LLR + + ++ +
Sbjct: 9 TNIIFVVGGPGSGKGTQCEKIVQKY-GYTHLSTGDLLR--SEVSSGSA-RGKKLSEIMEK 64
Query: 285 GDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPP--MILIDC 342
G V + VLD++ M K + G +IDG+PRE+ Q +FE +I P ++ +D
Sbjct: 65 GQLVPLETVLDMLRDAMVA-KVNTSKGFLIDGYPREVQQGEEFER--RIGQPTLLLYVDA 121
Query: 343 SKLVLHK---------GQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLP 393
+ + G++D++ ++RLE + + T P++ + + V+ + +
Sbjct: 122 GPETMTQRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVD 181
Query: 394 QVREEFERVLKKIID 408
V + L +++
Sbjct: 182 SVFSQVCTHLDALLN 196
Score = 53.7 bits (130), Expect = 1e-08
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 14/125 (11%)
Query: 48 MLEMKMS---PAAKAFLISGYPRNMRDVVEYSDKIKTINGVILI-AWRQSLLERQIDYGA 103
ML M +K FLI GYPR ++ E+ +I ++ + A +++ +R + G
Sbjct: 76 MLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRGE 135
Query: 104 KLGH------VILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAV 157
G I + L +Y+ PV F+++RG++ VN E + V++ T +
Sbjct: 136 TSGRVDDNEETI----KKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDSVFSQVCTHL 191
Query: 158 LKILN 162
+LN
Sbjct: 192 DALLN 196
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region,
conformational changes, transferase; 2.10A {Homo
sapiens} SCOP: c.37.1.1
Length = 196
Score = 101 bits (255), Expect = 4e-25
Identities = 42/196 (21%), Positives = 91/196 (46%), Gaps = 17/196 (8%)
Query: 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS 283
PLVV+V+GGPG+ K C ++++ Y +T +S G+LLR ++ I+ +
Sbjct: 2 KPLVVFVLGGPGAGKGTQCARIVEKY-GYTHLSAGELLR--DERKNPDSQYGELIEKYIK 58
Query: 284 AGDFVNRDVVLDIVYAEMKKT--KYTEADGIVIDGFPREMSQLIDFENKYQIHPP---MI 338
G V ++ + ++ EM +T + + +IDGFPR L + ++
Sbjct: 59 EGKIVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVL 118
Query: 339 LIDCSKLVLHK---------GQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGD 389
DC+ + + G+ D++ + +R++ + + T P++ + ++ +D
Sbjct: 119 FFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDAS 178
Query: 390 TQLPQVREEFERVLKK 405
+ +V +E ++ K
Sbjct: 179 KSVDEVFDEVVQIFDK 194
Score = 41.8 bits (99), Expect = 2e-04
Identities = 23/131 (17%), Positives = 58/131 (44%), Gaps = 18/131 (13%)
Query: 43 VTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYSDKIKT---INGVILI-AWRQSLLERQ 98
+ + M + FLI G+PRN ++ ++ + ++ V+ + +ER
Sbjct: 72 LKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERC 131
Query: 99 IDYGAKLG------HVILSLARMELANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYAD 152
++ G G + R++ + Q+ P+ D +++ G + ++ ++ EV+ +
Sbjct: 132 LERGKSSGRSDDNRESLEK--RIQT--YLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDE 187
Query: 153 FRTAVLKILNK 163
V++I +K
Sbjct: 188 ----VVQIFDK 194
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 69.9 bits (170), Expect = 1e-12
Identities = 51/371 (13%), Positives = 103/371 (27%), Gaps = 119/371 (32%)
Query: 143 ERNPVEVYADFRTAVLK-----ILNKNNVVPGSKPLVNGNAIPVPETLPPQVQSIAATVH 197
E+ F VL+ +++ ++ I + L Q
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF----- 126
Query: 198 SPPKHFTRPNGVVSEPYRKIKSV---ERNTPLVVWVVGGPGSSKSEMCQKVLQDY----- 249
+ +R +PY K++ R V+ + G GS K+ + V Y
Sbjct: 127 -AKYNVSRL-----QPYLKLRQALLELRPAKNVL-IDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 250 -PN---WTQISLGK------------------------LLRYFANIEDDGEGLNSRIKSS 281
W ++L + +NI+ + + ++
Sbjct: 180 MDFKIFW--LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 282 VSAGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGF---------PREMSQLIDF-ENKY 331
+ + + N +VL V + + F R Q+ DF
Sbjct: 238 LKSKPYENCLLVLLNVQ-----------NAKAWNAFNLSCKILLTTRF-KQVTDFLSAAT 285
Query: 332 QIHPPMILIDCSKLVLHKGQIDNSVSAFRRRLELFRERTLP------------MLRAMDV 379
H + D + L D S + L+ R + LP ++
Sbjct: 286 TTHISL---DHHSMTLTP---DEVKSLLLKYLDC-RPQDLPREVLTTNPRRLSIIAESIR 338
Query: 380 ETRLTIVDGDTQLPQVR-EEFERVLKKIIDDLENTARPRDKRNH-TALSLDNDNTVVHDL 437
+ T V ++ +++ ++ LE P + R LS+ +
Sbjct: 339 DGLATW----DNWKHVNCDKLTTIIESSLNVLE----PAEYRKMFDRLSVFPPS------ 384
Query: 438 EGGAGEPVNIP 448
+IP
Sbjct: 385 -------AHIP 388
Score = 57.9 bits (139), Expect = 6e-09
Identities = 73/550 (13%), Positives = 161/550 (29%), Gaps = 172/550 (31%)
Query: 18 RNPLKMFNLFVSEEV-KDFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRNMRDVVEYS 76
+M FV E + ++ FL S TE M + + I R D ++
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT----RMY-IEQRDRLYNDNQVFA 127
Query: 77 D-----------------KIKTINGVIL-------------IAWRQSLLERQIDYGA--- 103
+++ V++ ++ ++D+
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 104 KLGHVILSLARME-LANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTA------ 156
L + +E L + P + R + N + + A+ R
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPN---WTSRS-DHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 157 -----VL------KILNKNNVVPGSKPLVNGNAIPVPETLPPQVQSIAATVHSPPKHFTR 205
VL K N N+ K L+ V + L + + H T
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNL--SCKILLTTRFKQVTDFLSAATTTHISLDH-HSMTLTP 300
Query: 206 PNG------VVSEPYRKI-KSVERNTPLVVWVVGGPGSSKSEMCQKVLQDYPN-WTQISL 257
+ + + + V P + ++ + ++D W
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA-----------ESIRDGLATWD---- 345
Query: 258 GKLLRYFANIEDDGEGLNSRIKSSVSA----------GDFV--NRDV-----VLDIVYAE 300
+ ++ D L + I+SS++ +L +++ +
Sbjct: 346 -----NWKHVNCDK--LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398
Query: 301 MKKTKYTEADGIV--------IDGFPREM-----SQLIDF----ENKYQIHPPMI----- 338
+ ++ +V ++ P+E S ++ EN+Y +H ++
Sbjct: 399 VI---KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 339 -----LIDCSKLVL----------HKGQIDNS--VSAFRRR-LEL-FRERTLPMLRAMDV 379
D L H I++ ++ FR L+ F E+ + R
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI---RHDST 512
Query: 380 ETRLTIVDGDTQLPQVR----------EEFERVLKKIIDDLENTARPRDKRNHTAL---S 426
+ +T L Q++ ++ER++ I+D L +T L +
Sbjct: 513 AWNASGSILNT-LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571
Query: 427 LDNDNTVVHD 436
L ++ + +
Sbjct: 572 LMAEDEAIFE 581
Score = 39.1 bits (90), Expect = 0.004
Identities = 42/282 (14%), Positives = 75/282 (26%), Gaps = 111/282 (39%)
Query: 5 PLYATSL--LDFPSHRNPLKMFN-----LFVSEEVKDFSFLSSKTVTEVLM--------- 48
Y L L + FN L + + FLS+ T T + +
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 49 ----------LEMKMS---PAAKA---FLISGYPRNMRDVV---EY-----SDKIKTIN- 83
L+ + +S ++RD + + DK+ TI
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 84 -----------------------------GVILIAW----------------RQSLLERQ 98
++ + W + SL+E+Q
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 99 IDYGAKLGHVILSLARMELAN----------FYQN---------VTPVTD--FFDQRG-- 135
I +++L N Y + P D F+ G
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480
Query: 136 MLIAVNGERNPV--EVYADFRTAVLKILNKNNVVPGSKPLVN 175
+ + ER + V+ DFR KI + + S ++N
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism,
ATP-binding, nucleotide biosynthesis,
nucleotide-binding, transferase; HET: ADP; 1.9A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Length = 201
Score = 65.7 bits (161), Expect = 2e-12
Identities = 51/206 (24%), Positives = 90/206 (43%), Gaps = 21/206 (10%)
Query: 211 SEPYRKIKSVERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDD 270
+ V R + + V ++G PG+ K K+ + QIS G+L R NIE+
Sbjct: 6 HHHHHSSGLVPRGSHMRVLLLGPPGAGKGTQAVKLAEKL-GIPQISTGELFR--RNIEEG 62
Query: 271 GEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ---LIDF 327
+ L K + AGD V D+ ++V + A+G ++DG+PR + Q L +
Sbjct: 63 TK-LGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDA--ANGFILDGYPRSVEQAKALHEM 119
Query: 328 --ENKYQIHPPMILIDCSKLVLHK-----GQIDNSVSAFRRRLELFRERTLPMLRAMDV- 379
I ++ S+ VL + G+ D++ R++++R+ T P+L +
Sbjct: 120 LERRGTDIDA-VLEFRVSEEVLLERLKGRGRADDTDDVILNRMKVYRDETAPLL---EYY 175
Query: 380 ETRLTIVDGDTQLPQVREEFERVLKK 405
+L VD + +V R L K
Sbjct: 176 RDQLKTVDAVGTMDEVFARALRALGK 201
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG,
structural genomics, midwest center for structural
genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB:
3h0k_A
Length = 179
Score = 64.1 bits (156), Expect = 3e-12
Identities = 29/188 (15%), Positives = 69/188 (36%), Gaps = 17/188 (9%)
Query: 226 LVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAG 285
V+ + G PGS KSE K+L++ I + ++R + + + +
Sbjct: 2 KVILITGMPGSGKSEFA-KLLKER-GAKVIVMSDVVR--KRYSIEAKPGERLMDFAKRLR 57
Query: 286 DFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKL 345
+ VV + E+ + D +V DG R ++++ +F+ ++ +
Sbjct: 58 EIYGDGVVARLCVEELGTSN---HDLVVFDGV-RSLAEVEEFKRLLGDSVYIVAVHSPPK 113
Query: 346 VLHKGQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTI------VDGDTQLPQVREEF 399
+ +K I+ S + + R + + I + D+ + +
Sbjct: 114 IRYKRMIERLRSDDSKEISELIRR---DREELKLGIGEVIAMADYIITNDSNYEEFKRRC 170
Query: 400 ERVLKKII 407
E V +++
Sbjct: 171 EEVTDRVL 178
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding,
human, structura genomics, structural genomics
consortium, SGC, transferase; HET: GP5; 2.05A {Homo
sapiens} PDB: 2ar7_A* 3ndp_A
Length = 246
Score = 59.6 bits (145), Expect = 4e-10
Identities = 40/219 (18%), Positives = 76/219 (34%), Gaps = 43/219 (19%)
Query: 231 VGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNR 290
+G PGS K +CQ++ Q++ +S G LR NI+ E + K + V
Sbjct: 33 LGPPGSGKGTVCQRIAQNF-GLQHLSSGHFLR--ENIKASTE-VGEMAKQYIEKSLLVPD 88
Query: 291 DVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIH-------PPMILID-- 341
V+ ++ +E++ ++DGFPR + Q + ++ P L D
Sbjct: 89 HVITRLMMSELENR---RGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRL 145
Query: 342 -----C--SKLVLHKG-------------------QIDNSVSAFRRRLELFRERTLPMLR 375
S V + Q D+ A RL +++ P++
Sbjct: 146 SRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAKPVIE 205
Query: 376 AMDVETRLTIVDGDTQLPQVREEFERVLKKIIDDLENTA 414
L G T+ ++ + I +++
Sbjct: 206 LYKSRGVLHQFSG-TETNKIWPYVYTLFSNKITPIQSKE 243
Score = 33.4 bits (77), Expect = 0.12
Identities = 8/47 (17%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 117 LANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLKILNK 163
L + PV + + RG+L +G +++ T +
Sbjct: 193 LRQYKDVAKPVIELYKSRGVLHQFSGTE-TNKIWPYVYTLFSNKITP 238
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP
phosphotransferase, myokinase, structural genomics,
structural genomics consortium, SGC; 1.48A {Homo
sapiens} PDB: 2ak3_A*
Length = 227
Score = 57.6 bits (140), Expect = 1e-09
Identities = 40/215 (18%), Positives = 75/215 (34%), Gaps = 43/215 (20%)
Query: 231 VGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNR 290
+G PGS K + ++ + +S G LLR N+ E + K+ + G +
Sbjct: 13 MGAPGSGKGTVSSRITTHF-ELKHLSSGDLLR--DNMLRGTE-IGVLAKAFIDQGKLIPD 68
Query: 291 DVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIH-------PPMILID-- 341
DV+ + E+K ++DGFPR + Q + YQI P ++
Sbjct: 69 DVMTRLALHELKNLT---QYSWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRL 125
Query: 342 -----C--SKLVLHKG-------------------QIDNSVSAFRRRLELFRERTLPMLR 375
S V + + D+ +RL+ + ++T P+L
Sbjct: 126 TARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQREDDKPETVIKRLKAYEDQTKPVLE 185
Query: 376 AMDVETRLTIVDGDTQLPQVREEFERVLKKIIDDL 410
+ L G T+ ++ L+ +
Sbjct: 186 YYQKKGVLETFSG-TETNKIWPYVYAFLQTKVPQR 219
Score = 35.3 bits (82), Expect = 0.028
Identities = 7/56 (12%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 117 LANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLKILNKNNVVPGSKP 172
L + PV +++ ++G+L +G +++ + + + + P
Sbjct: 173 LKAYEDQTKPVLEYYQKKGVLETFSGTE-TNKIWPYVYAFLQTKVPQRSQKASVTP 227
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis,
nucleotide-binding, transferase, structural genomics;
1.80A {Thermus thermophilus}
Length = 186
Score = 56.0 bits (136), Expect = 2e-09
Identities = 44/186 (23%), Positives = 86/186 (46%), Gaps = 26/186 (13%)
Query: 232 GGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRD 291
G PG+ K ++ Q+ + ++S G +LR ++ L R++ + GD V D
Sbjct: 11 GPPGAGKGTQASRLAQEL-GFKKLSTGDILR--DHVARGTP-LGERVRPIMERGDLVPDD 66
Query: 292 VVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ---LIDF--ENKYQIHPPMILIDCSKLV 346
++L+++ E+ + ++ DGFPR ++Q L E ++ ++L++ +
Sbjct: 67 LILELIREELAE-------RVIFDGFPRTLAQAEALDRLLSETGTRLLG-VVLVEVPEEE 118
Query: 347 LHK---------GQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVRE 397
L + G+ D++ RRRLE++RE+T P++ + L VDG +V
Sbjct: 119 LVRRILRRAELEGRSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRVDGLGTPDEVYA 178
Query: 398 EFERVL 403
L
Sbjct: 179 RIRAAL 184
Score = 30.6 bits (70), Expect = 0.73
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 19/114 (16%)
Query: 57 AKAFLISGYPRNMRDVVEYSDKI-----KTINGVILI-AWRQSLLERQIDYGAKLG---- 106
A+ + G+PR + E D++ + GV+L+ + L+ R + G
Sbjct: 77 AERVIFDGFPRTL-AQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAELEGRSDD 135
Query: 107 --HVILSLARMELANFYQNVT-PVTDFFDQRGMLIAVNGERNPVEVYADFRTAV 157
+ R+E+ Y+ T P+ +++ RG+L V+G P EVYA R A+
Sbjct: 136 NEETVRR--RLEV---YREKTEPLVGYYEARGVLKRVDGLGTPDEVYARIRAAL 184
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET:
AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Length = 222
Score = 55.7 bits (135), Expect = 4e-09
Identities = 47/219 (21%), Positives = 78/219 (35%), Gaps = 47/219 (21%)
Query: 232 GGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRD 291
G P S K C+ + Y IS G LLR A I E R K + G V +
Sbjct: 12 GAPASGKGTQCELIKTKY-QLAHISAGDLLR--AEIAAGSE-NGKRAKEFMEKGQLVPDE 67
Query: 292 VVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ-------------LIDFE---------- 328
+V+++V +++ E +G ++DG+PR SQ I +
Sbjct: 68 IVVNMVKERLRQPDAQE-NGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERV 126
Query: 329 ----------NKYQI--HPPMILIDCSKLVLHKGQIDNSVSAFRRRLELFRERTLPMLRA 376
Y + PP S+L D++ + RLE + + +L
Sbjct: 127 VGRRLDPVTGKIYHLKYSPPENEEIASRLTQRF---DDTEEKVKLRLETYYQNIESLL-- 181
Query: 377 MDV-ETRLTIVDGDTQLPQVREEFERVLKKIIDDLENTA 414
E + V GD + V + + +L I++
Sbjct: 182 -STYENIIVKVQGDATVDAVFAKIDELLGSILEKKNEMV 219
Score = 34.5 bits (80), Expect = 0.048
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 117 LANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLKILNKNN 165
L +YQN+ + + +++ V G+ V+A + IL K N
Sbjct: 170 LETYYQNIESLLSTY--ENIIVKVQGDATVDAVFAKIDELLGSILEKKN 216
>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding,
nucleo binding, transferase; HET: AP5; 1.90A {Aquifex
aeolicus} PDB: 2rh5_A
Length = 206
Score = 55.7 bits (135), Expect = 4e-09
Identities = 39/208 (18%), Positives = 85/208 (40%), Gaps = 42/208 (20%)
Query: 231 VGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNR 290
+G PG+ K +++ ++ + IS G +LR ++ L + K + G+ V
Sbjct: 6 LGPPGAGKGTQAKRLAKEK-GFVHISTGDILR--EAVQKGTP-LGKKAKEYMERGELVPD 61
Query: 291 DVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ---LIDFENKYQIH---------PPMI 338
D+++ ++ + + + ++ DGFPR + Q L + K + P +
Sbjct: 62 DLIIALI-----EEVFPKHGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEV 116
Query: 339 LID-------C--SKLVLHK------------GQIDNSVSAFRRRLELFRERTLPMLRAM 377
+I+ + V H + D+ ++RLE++RE+T P++
Sbjct: 117 VIERLSGRRINPETGEVYHVKYNPPPPGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYY 176
Query: 378 DVETRLTIVDGDTQLPQVREEFERVLKK 405
+ L I+D + +V + V+
Sbjct: 177 KKKGILRIIDASKPVEEVYRQVLEVIGD 204
Score = 37.2 bits (87), Expect = 0.006
Identities = 10/49 (20%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 117 LANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLKILNKNN 165
L + + P+ +++ ++G+L ++ + EVY VL+++ N
Sbjct: 162 LEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQ----VLEVIGDGN 206
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics
consortium, SGC, RO fold, transferase, ATP binding,
phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium
falciparum}
Length = 243
Score = 56.1 bits (136), Expect = 5e-09
Identities = 46/236 (19%), Positives = 92/236 (38%), Gaps = 47/236 (19%)
Query: 209 VVSEPYRKIKSVERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIE 268
+++E R+ + + + +G PGS K + + + + +S G LLR E
Sbjct: 14 LLNELKRRYACLSKPDGRYI-FLGAPGSGKGTQSLNLKKSH-CYCHLSTGDLLR--EAAE 69
Query: 269 DDGEGLNSRIKSSVSAGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ---LI 325
E L +IK+ ++ G V+ +VL +V ++K + G ++DG+PR + Q L
Sbjct: 70 KKTE-LGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQC--KKGFILDGYPRNVKQAEDLN 126
Query: 326 DFENKYQIHPPMIL---IDCSKLV-------LHK--GQI--------------------- 352
K Q + + LV +HK G+I
Sbjct: 127 KLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNEPL 186
Query: 353 ----DNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLK 404
D++ ++RL +F+ T P++ + L +D + ++ + +
Sbjct: 187 IQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQHID 242
Score = 35.7 bits (83), Expect = 0.024
Identities = 5/46 (10%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 117 LANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLKILN 162
L F +P+ ++ + +LI ++ + ++ + + ++
Sbjct: 201 LTVFKSETSPLISYYKNKNLLINLDATQPANDLEKK----ISQHID 242
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A
{Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A*
1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Length = 214
Score = 54.9 bits (133), Expect = 9e-09
Identities = 46/222 (20%), Positives = 84/222 (37%), Gaps = 65/222 (29%)
Query: 232 GGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRD 291
G P + K Q +++ Y QIS G +LR A ++ E L + K + AG V +
Sbjct: 7 GAPVAGKGTQAQFIMEKY-GIPQISTGDMLR--AAVKSGSE-LGKQAKDIMDAGKLVTDE 62
Query: 292 VVLDIVYAEMKKTKYTEADGIVIDGFPR---------EMSQLIDFENKYQIHPPMILIDC 342
+V+ +V + + +G ++DGFPR E +D+ ++ D
Sbjct: 63 LVIALVKERIAQEDC--RNGFLLDGFPRTIPQADAMKEAGINVDY---------VLEFDV 111
Query: 343 SKLVL---------HK--GQI-------------------------DNSVSAFRRRLELF 366
++ H G++ D+ R+RL +
Sbjct: 112 PDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEY 171
Query: 367 RERTLPML-----RAMDVETRLTIVDGDTQLPQVREEFERVL 403
+ T P++ A T+ VDG + +VR + E++L
Sbjct: 172 HQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL 213
Score = 29.8 bits (68), Expect = 1.8
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 117 LANFYQNVTPVTDFFDQRGM-----LIAVNGERNPVEVYADFRTAV 157
L ++Q P+ ++ + V+G + EV AD +
Sbjct: 168 LVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL 213
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide
biosynthesis, nucleotide-BIND transferase, structural
genomics; 2.10A {Burkholderia pseudomallei 1710B}
Length = 230
Score = 52.2 bits (126), Expect = 8e-08
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 232 GGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRD 291
G PG+ K + + + QIS G +LR A ++ L K+ + G V
Sbjct: 15 GAPGAGKGTQANFIKEKF-GIPQISTGDMLR--AAVKAGTP-LGVEAKTYMDEGKLVPDS 70
Query: 292 VVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
+++ +V +K+ A+G + DGFPR ++Q
Sbjct: 71 LIIGLVKERLKEADC--ANGYLFDGFPRTIAQ 100
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein
inhibitors, nucleotide-binding, transferase; HET: AP5;
1.60A {Cryptosporidium parvum iowa II}
Length = 217
Score = 51.8 bits (125), Expect = 8e-08
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 231 VGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNR 290
+G PGS K C+ + ++Y +S G +LR I++ + + KS + +G+FV
Sbjct: 11 IGAPGSGKGTQCEFIKKEY-GLAHLSTGDMLR--EAIKNGTK-IGLEAKSIIESGNFVGD 66
Query: 291 DVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
++VL +V + +G V+DGFPR + Q
Sbjct: 67 EIVLGLVKEKFDLGVC--VNGFVLDGFPRTIPQ 97
Score = 34.8 bits (81), Expect = 0.043
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 117 LANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAV 157
L F++ P+ F++ G+L VN + P EV + +
Sbjct: 177 LDVFHKQTAPLVKFYEDLGILKRVNAKLPPKEVTEQIKKIL 217
Score = 28.3 bits (64), Expect = 5.2
Identities = 12/51 (23%), Positives = 29/51 (56%)
Query: 353 DNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVL 403
D++ A + RL++F ++T P+++ + L V+ +V E+ +++L
Sbjct: 167 DDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKLPPKEVTEQIKKIL 217
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase,
transferase (phosphotransferase); HET: AP5; 1.63A
{Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB:
2aky_A* 3aky_A* 1dvr_A*
Length = 220
Score = 51.8 bits (125), Expect = 1e-07
Identities = 21/93 (22%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 231 VGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNR 290
+G PG+ K + + + + ++ G +LR + I + L K + G V+
Sbjct: 10 IGPPGAGKGTQAPNLQERF-HAAHLATGDMLR--SQIAKGTQ-LGLEAKKIMDQGGLVSD 65
Query: 291 DVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
D++++++ E+ +G ++DGFPR + Q
Sbjct: 66 DIMVNMIKDELTNNPAC-KNGFILDGFPRTIPQ 97
Score = 39.8 bits (94), Expect = 0.001
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 117 LANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLKILNKN 164
LA ++ P+ DF+ + G+ V+ + P V+AD +L L KN
Sbjct: 177 LAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWAD----ILNKLGKN 220
Score = 31.0 bits (71), Expect = 0.77
Identities = 11/53 (20%), Positives = 20/53 (37%)
Query: 353 DNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKK 405
D++ A ++RL + +T P++ VD V + L K
Sbjct: 167 DDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLGK 219
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding,
nucleotide-binding, transferase; HET: AP5; 2.00A
{Marinibacillus marinus}
Length = 216
Score = 50.2 bits (121), Expect = 3e-07
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 231 VGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNR 290
+G PG+ K +++++ Y IS G + R A I++ E L + KS + G+ V
Sbjct: 6 MGLPGAGKGTQAEQIIEKY-EIPHISTGDMFR--AAIKNGTE-LGLKAKSFMDQGNLVPD 61
Query: 291 DVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
+V + IV+ + K G ++DGFPR ++Q
Sbjct: 62 EVTIGIVHERLSKDDC--QKGFLLDGFPRTVAQ 92
Score = 35.2 bits (82), Expect = 0.031
Identities = 10/44 (22%), Positives = 24/44 (54%)
Query: 117 LANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLKI 160
L + P+ DF+ Q+G+L ++G+++ +V+ D + +
Sbjct: 172 LDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDLLGGL 215
Score = 30.6 bits (70), Expect = 0.80
Identities = 11/54 (20%), Positives = 25/54 (46%)
Query: 353 DNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKI 406
D+ + RL++ ++T P+L + L +DG + +V + +L +
Sbjct: 162 DDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDLLGGL 215
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase;
HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A*
3l0p_A*
Length = 223
Score = 50.0 bits (120), Expect = 4e-07
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Query: 232 GGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRD 291
G GS K V Y + I G + R +I E L + K + GD V D
Sbjct: 7 GPNGSGKGTQGNLVKDKY-SLAHIESGGIFR--EHIGGGTE-LGKKAKEFIDRGDLVPDD 62
Query: 292 VVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
+ + +V ++ DG ++DGFPR Q
Sbjct: 63 ITIPMVLETLESK---GKDGWLLDGFPRNTVQ 91
Score = 28.4 bits (64), Expect = 4.4
Identities = 8/59 (13%), Positives = 18/59 (30%), Gaps = 8/59 (13%)
Query: 353 DNSVSAFRRRLELFRERTLPML--------RAMDVETRLTIVDGDTQLPQVREEFERVL 403
D A +R +++ L A +DG+ + +++ L
Sbjct: 164 DQDEGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGSIDSIKDTLLAQL 222
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase,
phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1
g.41.2.1 PDB: 2ak2_A 2c9y_A*
Length = 233
Score = 50.3 bits (121), Expect = 4e-07
Identities = 24/92 (26%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 232 GGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRD 291
G PG+ K K+ +++ ++ G +LR A + E L ++K+++ AG V+ +
Sbjct: 23 GPPGAGKGTQAPKLAKNF-CVCHLATGDMLR--AMVASGSE-LGKKLKATMDAGKLVSDE 78
Query: 292 VVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
+VL+++ ++ +G ++DGFPR + Q
Sbjct: 79 MVLELIEKNLETPPC--KNGFLLDGFPRTVRQ 108
Score = 35.6 bits (83), Expect = 0.024
Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 117 LANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLKILNK 163
L ++ TP+ +++ +RG+ A++ + P V+A +L +K
Sbjct: 188 LEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFAS----ILAAFSK 230
Score = 29.5 bits (67), Expect = 1.9
Identities = 10/54 (18%), Positives = 19/54 (35%)
Query: 353 DNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKI 406
D++ A + RLE + +T P++ + +D V K
Sbjct: 178 DDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFSKA 231
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.6 bits (123), Expect = 6e-07
Identities = 95/561 (16%), Positives = 168/561 (29%), Gaps = 170/561 (30%)
Query: 4 PPLYATSLLDFPSHR---NPLKMFNLFVSEEVKDF--SFLSSK---TVTEVLMLEMKMSP 55
L L + S + + F+ ++ + +F +L + L+ E +
Sbjct: 58 AELVG-KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL 116
Query: 56 AAKAFLISGYPRNMRDVVEYSDKIKTINGVILIAWRQSLLERQIDYG-AKL-------GH 107
LI Y + + S L R + G A+L G+
Sbjct: 117 VKTKELIKNY---------I--TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGN 165
Query: 108 VILSLARMELANFYQNVTP-VTDFFDQRGMLIAVNGERNPVEVYADFRTA--VLKILNKN 164
EL + YQ V D ++ R ++ F +L+ L
Sbjct: 166 TDDYFE--ELRDLYQTYHVLVGDLIKFSAETLS-ELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 165 NVVPGSKPLVNGNAIPVPETLPP----QVQSIAATVHS---PPKHF--------TRPNGV 209
+ P L+ +IP+ + P Q+ T P G+
Sbjct: 223 SNTPDKDYLL---SIPI--SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL 277
Query: 210 VS----------EPYRKI--KSVERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISL 257
V+ E + K++ ++ ++ G C + YPN T +
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAIT----VLFFI----GVR----CY---EAYPN-TSLPP 321
Query: 258 GKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIVY---AEMKKTKYTE------ 308
L + ++ EG+ S + S+S + ++ V D V + + K E
Sbjct: 322 SIL----EDSLENNEGVPSPM-LSISN---LTQEQVQDYVNKTNSHLPAGKQVEISLVNG 373
Query: 309 ADGIVIDGFPREMSQLIDFENKYQIHPPMILIDCSKLVLHKGQ----IDNSVSAFRRRLE 364
A +V+ G P+ + L L L K + +D S F R
Sbjct: 374 AKNLVVSGPPQSLYGL-------------------NLTLRKAKAPSGLDQSRIPFSERKL 414
Query: 365 LFRERTLP---------MLRAMD-VETRLTIVD-----GDTQLPQ--------VREEFER 401
F R LP ++ A D + L + D Q+P +R
Sbjct: 415 KFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGS 474
Query: 402 VLKKIIDDLENTARPRD--KRNHTALSLDNDNTVVHDLEGGAGEPVNIPNGFGP-PREN- 457
+ ++I+D + P + H L+ G G +G G N
Sbjct: 475 ISERIVDCI--IRLPVKWETTTQFKAT--------HILDFGPGG----ASGLGVLTHRNK 520
Query: 458 -----RTV--TTLFTKPQDPV 471
R + TL P D
Sbjct: 521 DGTGVRVIVAGTLDINPDDDY 541
Score = 37.0 bits (85), Expect = 0.018
Identities = 44/297 (14%), Positives = 92/297 (30%), Gaps = 91/297 (30%)
Query: 51 MKM-----SPAAKA-------FLISGYPRNMRDVVEYSDKIKTI-----NGVILIAWRQS 93
M M S AA+ Y ++ D+V + TI G +
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKG-------KR 1683
Query: 94 LLERQIDYGAKLGHVILSLARMELANFYQNVTPVT---DFFDQRGML---------IAVN 141
+ E Y A + I+ +++ ++ + + F ++G+L + +
Sbjct: 1684 IREN---YSAMIFETIVD-GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTL- 1738
Query: 142 GERNPVEVYADFRTAVLKILNKNNVVPGSKP-----------LV-NGNAIPVPETLPPQV 189
+E A + L ++P L + + + +
Sbjct: 1739 -----MEK------AAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLV---- 1783
Query: 190 QSIAATVHSPPKHFTRPNGVVSEPYRKIKSVERNTPLVVWVVGGPGSSKSEMCQKVLQDY 249
V F R G+ + + R+ ++ + PG + Q+ LQ
Sbjct: 1784 ----EVV------FYR--GMTMQVAVPRDELGRSNYGMIAI--NPGRVAASFSQEALQYV 1829
Query: 250 PNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIV-YAEMKKTK 305
G L+ N N + V+AGD D V +++ + +++K
Sbjct: 1830 VERVGKRTGWLVEI-VN-------YNVENQQYVAAGDLRALDTVTNVLNFIKLQKID 1878
Score = 33.9 bits (77), Expect = 0.17
Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 27/110 (24%)
Query: 345 LVLHKGQIDNSVS--------AFRRRLELFRERTLPM---LRAMDVETR---------LT 384
L L G +++ + A + + E F + LP A D E L
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQ-EQF-NKILPEPTEGFAADDEPTTPAELVGKFLG 66
Query: 385 IVDGDTQLPQVREEFERVLKKIIDDLENTA-RPRDKRNHT-ALSLDNDNT 432
V + P +F++VL + + EN D H A L +N
Sbjct: 67 YVSSLVE-PSKVGQFDQVLNLCLTEFENCYLEGNDI--HALAAKLLQEND 113
Score = 30.0 bits (67), Expect = 2.6
Identities = 25/117 (21%), Positives = 34/117 (29%), Gaps = 43/117 (36%)
Query: 308 EADGIVID--GFPREMSQL-IDFENKYQIHPPMILIDCSKLVLHKGQIDNSVSAFRRRLE 364
AD D GF S L I N P L +H G +R+
Sbjct: 1648 RADNHFKDTYGF----SILDIVINN-----PV-------NLTIHFGGEKG------KRI- 1684
Query: 365 LFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKII-----DDL---ENT 413
RE M+ TIVDG + ++ +E L + T
Sbjct: 1685 --RENYSAMIFE-------TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT 1732
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination,
ATP-binding, cytoplasm, metal-binding, nucleotide
biosynthesis, nucleotide-binding; HET: AP5; 1.58A
{Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A*
2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A*
1s3g_A*
Length = 216
Score = 49.1 bits (118), Expect = 7e-07
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 231 VGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVNR 290
+G PG+ K +++++ Y IS G + R A ++++ L KS + G+ V
Sbjct: 6 MGLPGAGKGTQGERIVEKY-GIPHISTGDMFR--AAMKEETP-LGLEAKSYIDKGELVPD 61
Query: 291 DVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQ 323
+V + IV + K G ++DGFPR ++Q
Sbjct: 62 EVTIGIVKERLGKDDC--ERGFLLDGFPRTVAQ 92
Score = 35.2 bits (82), Expect = 0.030
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 117 LANFYQNVTPVTDFFDQRGMLIAVNGERNPVEVYADFRTAVLKI 160
L + P+ DF+D++G L+ VNG+++ +VYAD + + +
Sbjct: 172 LEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVLLGGL 215
Score = 31.0 bits (71), Expect = 0.70
Identities = 13/54 (24%), Positives = 27/54 (50%)
Query: 353 DNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKI 406
D++ +RLE+ ++T P+L D + L V+G + V + + +L +
Sbjct: 162 DDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVLLGGL 215
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 40.1 bits (93), Expect = 6e-04
Identities = 21/129 (16%), Positives = 49/129 (37%), Gaps = 19/129 (14%)
Query: 221 ERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKS 280
+ ++ + G PG+ K+ M + + + + + +GKL++ + L++ I
Sbjct: 7 QPKGINIL-ITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHII- 64
Query: 281 SVSAGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPPMILI 340
+ + D +LD + M V+D E+ F ++++
Sbjct: 65 -----EEKDEDRLLDFMEPIMVS-----RGNHVVDYHSSELFPERWFHM-------VVVL 107
Query: 341 DCSKLVLHK 349
S VL +
Sbjct: 108 HTSTEVLFE 116
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 36.8 bits (85), Expect = 0.006
Identities = 23/191 (12%), Positives = 56/191 (29%), Gaps = 32/191 (16%)
Query: 227 VVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGD 286
+ + G G KS C+++ N + G ++ + +
Sbjct: 4 LYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDIINHM-------------VVGGYRPPW 49
Query: 287 FVNR--DVVLDIVYAEMKKTKYTEADGIVIDG--FPREMSQLIDF--ENKYQIHPPMILI 340
+ + + + +V+D FP E L + I++
Sbjct: 50 ESDELLALTWKNITDLTVN-FLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIIL 108
Query: 341 DCSKLVLHKGQIDNSVSAFRRRLELFRERTLPMLRAMDVET--RLTIVDGDTQLPQVREE 398
++ L + A R++ E ER L ++ + + + P
Sbjct: 109 WTNREELLR------RDALRKKDEQMGERCLELVEEFESKGIDERYFYNTSHLQP---TN 159
Query: 399 FERVLKKIIDD 409
++K + +
Sbjct: 160 LNDIVKNLKTN 170
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 37.4 bits (86), Expect = 0.008
Identities = 30/216 (13%), Positives = 62/216 (28%), Gaps = 24/216 (11%)
Query: 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSA 284
++ +G PGS KS ++ + P + I+ + E+ E ++ K +
Sbjct: 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIV- 60
Query: 285 GDFVNRDVVLDIVYAEMKKTKYTEADGIVIDG---FPREMSQLIDFENKYQIHPPMILID 341
+ D + + G++I P F +Y + D
Sbjct: 61 -----TGMQFDTAKSILYGGD--SVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFD 113
Query: 342 CSKLVLHKGQIDNSVSAFRRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFER 401
L K R + +P+ + + G + +
Sbjct: 114 VPWTELVK------------RNSKRGTKAVPIDVLRSMYKSMREYLGLPVYNGTPGKPKA 161
Query: 402 VLKKIIDDLENTARPRDKRNHTALSLDNDNTVVHDL 437
V+ +D R + D N +V +L
Sbjct: 162 VIFD-VDGTLAKMNGRGPYDLEKCDTDVINPMVVEL 196
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 35.1 bits (81), Expect = 0.023
Identities = 20/128 (15%), Positives = 40/128 (31%), Gaps = 11/128 (8%)
Query: 225 PLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSA 284
++ +G PGS KS ++ + P + I+ + E+ E ++ K +
Sbjct: 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIV- 60
Query: 285 GDFVNRDVVLDIVYAEMKKTKYTEADGIVIDG---FPREMSQLIDFENKYQIHPPMILID 341
+ D + + G++I P F +Y + D
Sbjct: 61 -----TGMQFDTAKSILYGGD--SVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFD 113
Query: 342 CSKLVLHK 349
L K
Sbjct: 114 VPWTELVK 121
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins
(A/B), protein binding, transferase, phosphotransferase;
HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A*
3iim_A* 1rkb_A
Length = 180
Score = 35.4 bits (81), Expect = 0.023
Identities = 31/197 (15%), Positives = 65/197 (32%), Gaps = 27/197 (13%)
Query: 217 IKSVERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNS 276
+ S E + + G PG K+ + K L I++G L R + E +
Sbjct: 3 LGSPEFMLLPNILLTGTPGVGKTTLG-KELASKSGLKYINVGDLAREEQLYDGYDEEYDC 61
Query: 277 RIKSSVSAGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPREMSQLIDFENKYQIHPP 336
I ++ D V+D + +M++ G+++D + F
Sbjct: 62 PI---------LDEDRVVDELDNQMRE------GGVIVDYHGCDFFPERWFHIV------ 100
Query: 337 MILIDCSKLVLHKGQIDNSVSAFRRRLELFRERTLPML-RAMDVETRLTIVDGDTQLPQV 395
++ VL++ + + + E + A + + P
Sbjct: 101 -FVLRTDTNVLYERLETRGYNEKKLTDNIQCEIFQVLYEEATASYKEEIVHQLPSNKP-- 157
Query: 396 REEFERVLKKIIDDLEN 412
EE E + +I+ +E
Sbjct: 158 -EELENNVDQILKWIEQ 173
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3
(6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...;
bifunctional enzyme, EDTA complex; HET: F6P EDT ADP;
2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B*
3qpu_A* 3qpv_A* 3qpw_A*
Length = 520
Score = 32.0 bits (72), Expect = 0.53
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 196 VHSPPKHFTRPNGVVSEPYRKIKSVERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQI 255
S + P R N+P V+ +VG P K+ + +K L Y NW +
Sbjct: 6 TQSRVQKIWVPVDHRPSLPRSCGPKLTNSPTVIVMVGLPARGKTYISKK-LTRYLNWIGV 64
Query: 256 S 256
Sbjct: 65 P 65
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase
(phospho), phosphatase, hydrolase (phosp glycolysis,
bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus}
SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A*
1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Length = 469
Score = 31.5 bits (71), Expect = 0.63
Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 11/79 (13%)
Query: 178 AIPVPETLPPQVQSIAATVHSPPKHFTRPNGVVSEPYRKIKSVERNTPLVVWVVGGPGSS 237
A P T P + + P GV N P ++ +VG P
Sbjct: 2 ASPRELTQNPLKKIFMPYSNGRPALHASQRGVCMT----------NCPTLIVMVGLPARG 51
Query: 238 KSEMCQKVLQDYPNWTQIS 256
K+ + +K L Y N+ +
Sbjct: 52 KTYISKK-LTRYLNFIGVP 69
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces
morookaensis} PDB: 3azp_A 3azq_A
Length = 662
Score = 31.0 bits (70), Expect = 1.2
Identities = 17/104 (16%), Positives = 26/104 (25%), Gaps = 15/104 (14%)
Query: 132 DQRGMLIAVNGERNPVEVYA-DFRTAVLKILNKNNVVPGSKPLVNGNAIPVPETLPPQVQ 190
+ R EV D T + + V+ P P+
Sbjct: 345 SGTRAVGVAASPRTAYEVVELDTVTGRARTI-----GARHTDPVDPAYYPEPQIRTFTAP 399
Query: 191 SIAATVHSPPKHFTRPNGVVSEPYRKIKSVERNTPLVVWVVGGP 234
+H+ H P+ + P VV GGP
Sbjct: 400 D-GREIHA---HIYPPHSPDFTG-----PADELPPYVVMAHGGP 434
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 30.5 bits (68), Expect = 1.6
Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 4/81 (4%)
Query: 215 RKIKSVERNTPLVVWVVGGPGSSKSEM----CQKVLQDYPNWTQISLGKLLRYFANIEDD 270
KSV + + VG G KS + + P +L ++++
Sbjct: 32 LVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQES 91
Query: 271 GEGLNSRIKSSVSAGDFVNRD 291
L I S+V GD +N++
Sbjct: 92 NVRLKLTIVSTVGFGDQINKE 112
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 29.2 bits (65), Expect = 2.5
Identities = 15/91 (16%), Positives = 33/91 (36%), Gaps = 13/91 (14%)
Query: 224 TPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVS 283
++W+ G G K+ + + P + E+ G+ L R +
Sbjct: 4 RSPIIWINGPFGVGKTHTAHTLHERLPGS----------FVFEPEEMGQAL--RKLTPGF 51
Query: 284 AGDFVNRDVVLDIVYAEMKKTKYTEADGIVI 314
+GD + + ++ + + EA G +I
Sbjct: 52 SGDPQEHPMWIPLM-LDALQYASREAAGPLI 81
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein,
mostly mixed alpha-beta structures, one domain is
entirely helical; HET: DNA; 2.20A {Thermus aquaticus}
SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A*
1fw6_A* 1ewr_A*
Length = 765
Score = 29.7 bits (68), Expect = 2.8
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 20/80 (25%)
Query: 352 IDNSVSAF-----RRRLELFRERTLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKI 406
+D + +A + L P+L +E RL V+G + +RE R+L ++
Sbjct: 276 LDETRTAPGRRLLQSWLRH------PLLDRGPLEARLDRVEGFVREGALREGVRRLLYRL 329
Query: 407 IDDLE--------NTARPRD 418
DLE A P+D
Sbjct: 330 A-DLERLATRLELGRASPKD 348
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 29.1 bits (64), Expect = 3.4
Identities = 11/135 (8%), Positives = 37/135 (27%), Gaps = 18/135 (13%)
Query: 223 NTPLVVWVVGGPGSSKSEMCQKVLQD-YPNWTQIS---LGKLLRYFANIEDDGEGLNSRI 278
P+ + + G G+ K+ + + ++ N I ++ ++ + +
Sbjct: 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQQEYGKDSVEY 89
Query: 279 KSSVSAGDFVNRDVVLDIVYAEMKKTKYTEADGIVIDGFPR---EMSQLIDFENKYQIHP 335
+ + + + ++I+G R +
Sbjct: 90 TKDFAGK-----------MVESLVTKLSSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEV 138
Query: 336 PMILIDCSKLVLHKG 350
+ LI + +
Sbjct: 139 QLALIATKPELSYLS 153
>1gxs_A P-(S)-hydroxymandelonitrIle lyase chain A; inhibitor complex,
cyanogenesis mechanism; HET: NAG FUL DKA; 2.3A {Sorghum
bicolor} SCOP: c.69.1.5
Length = 270
Score = 28.9 bits (65), Expect = 3.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 223 NTPLVVWVVGGPGSS 237
PLV+W+ GGPG S
Sbjct: 53 AAPLVLWLNGGPGCS 67
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic
hypermutat protein-DNA complex, DNA mispair, cancer;
HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B*
2o8e_B* 2o8f_B*
Length = 1022
Score = 29.3 bits (66), Expect = 4.0
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 352 IDNSVSAFRRRLELFRER-TLPMLRAMDVETRLTIVDGDTQLPQVREEFERVLKKIIDDL 410
+D + F +RL ++ P+ + RL ++ +P E +LKK+ DL
Sbjct: 424 VDTCHTPFGKRL--LKQWLCAPLCNHYAINDRLDAIEDLMVVPDKISEVVELLKKLP-DL 480
Query: 411 E 411
E
Sbjct: 481 E 481
>1cpy_A Serine carboxypeptidase; hydrolase (carboxypeptidase); HET: NAG;
2.60A {Saccharomyces cerevisiae} SCOP: c.69.1.5 PDB:
1wpx_A* 1ysc_A*
Length = 421
Score = 28.8 bits (65), Expect = 4.4
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 223 NTPLVVWVVGGPGSS 237
P+++W+ GGPG S
Sbjct: 43 KDPVILWLNGGPGCS 57
>1ivy_A Human protective protein; carboxypeptidase, serine
carboxypeptidase, protective protei glycoprotein,
zymogen; HET: NAG NDG; 2.20A {Homo sapiens} SCOP:
c.69.1.5
Length = 452
Score = 29.0 bits (65), Expect = 4.4
Identities = 9/15 (60%), Positives = 13/15 (86%)
Query: 223 NTPLVVWVVGGPGSS 237
N+P+V+W+ GGPG S
Sbjct: 47 NSPVVLWLNGGPGCS 61
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 28.6 bits (63), Expect = 6.0
Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 8/85 (9%)
Query: 215 RKIKSVERNTPLVVWVVGGPGSSKSEM--------CQKVLQDYPNWTQISLGKLLRYFAN 266
KSV+R + VVG G KS + P+ ++ +
Sbjct: 21 VYRKSVKRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVL 80
Query: 267 IEDDGEGLNSRIKSSVSAGDFVNRD 291
I++ G L I + GD V+
Sbjct: 81 IKEGGVQLLLTIVDTPGFGDAVDNS 105
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.8 bits (61), Expect = 6.1
Identities = 9/65 (13%), Positives = 20/65 (30%), Gaps = 15/65 (23%)
Query: 62 ISGYPRNMRDVVEYSDKIKTINGVILIAWRQS---LLERQIDYGAKLGHVILSLARMELA 118
I+ R + + + I+ WR+ L+ + A+ +L
Sbjct: 74 IAQADR----LTQEPESIR--------KWREEQRKRLQELDAASKVMEQEWREKAKKDLE 121
Query: 119 NFYQN 123
+ Q
Sbjct: 122 EWNQR 126
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural
genomics, APC84050.2, PS protein structure initiative;
HET: MSE; 1.82A {Neisseria meningitidis MC58}
Length = 199
Score = 28.1 bits (62), Expect = 6.4
Identities = 15/112 (13%), Positives = 36/112 (32%), Gaps = 11/112 (9%)
Query: 230 VVGGPGSSKSEMCQKVLQDYPNWTQISLGKLLRYFANIEDDGEGLNSRIKSSVSAGDFVN 289
+ G PGS K+ ++ + + G + F NI +GL + +
Sbjct: 10 ITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNI----KGLKIPHTYIETDAKKLP 65
Query: 290 RDVVLDIVYAEMKKTKYTEADG---IVIDGFPREMSQLIDFENKYQIHPPMI 338
+ + +M + + +++D E + + P +
Sbjct: 66 KSTDEQLSAHDMYEWIKKPENIGSIVIVD----EAQDVWPARSAGSKIPENV 113
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA
glycosylase, transition state analog, DNA repair; HET:
NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A*
1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Length = 369
Score = 28.1 bits (63), Expect = 6.9
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 379 VETRLTIVDGDTQLPQVREEFERVLKKIIDDLENTARPRD 418
V +RL +V D P R+ FE+++++I+ P
Sbjct: 153 VLSRLFLVTDDIAKPSTRKRFEQIVREIMAY----ENPGA 188
>1whs_A Serine carboxypeptidase II; HET: NAG FUC; 2.00A {Triticum aestivum}
SCOP: c.69.1.5 PDB: 1bcs_A* 1bcr_A* 1wht_A* 3sc2_A*
Length = 255
Score = 28.0 bits (63), Expect = 7.3
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 223 NTPLVVWVVGGPGSS 237
PLV+W+ GGPG S
Sbjct: 47 PAPLVLWLNGGPGCS 61
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 27.8 bits (61), Expect = 7.8
Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 9/92 (9%)
Query: 215 RKIKSVERNTPLVVWVVGGPGSSKS----EMCQKVLQDYPNWTQISL-----GKLLRYFA 265
KSV++ + VVG G KS + L + + ++
Sbjct: 8 VHRKSVKKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTV 67
Query: 266 NIEDDGEGLNSRIKSSVSAGDFVNRDVVLDIV 297
IE+ G L + + GD +N +
Sbjct: 68 EIEERGVKLRLTVVDTPGYGDAINCRDCFKTI 99
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane
protein, structural protein; 2.70A {Staphylococcus
epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Length = 729
Score = 28.0 bits (62), Expect = 8.2
Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 18/96 (18%)
Query: 34 DFSFLSSKTVTEVLMLEMKMSPAAKAFLISGYPRN-----MRDVVEYSDKIKTING---- 84
D+ ++ TE+ M + L GYPRN + EY D+I+T
Sbjct: 480 DYLISPNRYSTEIFRSAFWMDE--ERILEIGYPRNDVLVNRANDQEYLDEIRTHLNLPSD 537
Query: 85 --VILIA--WRQSLLERQIDYGAKLGHVILSLARME 116
VI+ A WR + Y +L + L +
Sbjct: 538 KKVIMYAPTWRDDEFVSKGKYLFEL---KIDLDNLY 570
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 28.3 bits (63), Expect = 8.2
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 2/63 (3%)
Query: 199 PPKHFTRPNGVVSEPYRKIKSVERNTPLVVWVVGGPGSSKSEMCQKVLQDYPNWTQISLG 258
P TR +V +K+ + V + G G KS + + ++D+ G
Sbjct: 123 PVIFVTRKK-LVHAIQQKLWKLNGEPGWV-TIYGMAGCGKSVLAAEAVRDHSLLEGCFSG 180
Query: 259 KLL 261
+
Sbjct: 181 GVH 183
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 27.7 bits (62), Expect = 8.3
Identities = 7/33 (21%), Positives = 17/33 (51%)
Query: 215 RKIKSVERNTPLVVWVVGGPGSSKSEMCQKVLQ 247
+ I +++ LV+ + G S K+ + ++ Q
Sbjct: 12 KTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.394
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,073,256
Number of extensions: 506012
Number of successful extensions: 1224
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1174
Number of HSP's successfully gapped: 102
Length of query: 520
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 422
Effective length of database: 3,965,535
Effective search space: 1673455770
Effective search space used: 1673455770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.9 bits)