BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11032
(514 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 96/220 (43%), Gaps = 48/220 (21%)
Query: 77 MIHSGERHIKCEVCSLALLSKSHLKQHMRVHTGERPHECEVCGKRFAKRSNLNAHKKKVT 136
+ GE+ C C + HL +H R HTGE+P++C CGK F+ + +L H++
Sbjct: 14 ALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRT-- 71
Query: 137 RHTGRDEVPSIKPLKRKRNISFLTGAREGMPLIHECPTCGKKWRTRSELNKHTKTHSDLR 196
HTG KP K CP CGK + R+ L H +TH+ +
Sbjct: 72 -HTGE------KPYK--------------------CPECGKSFSQRANLRAHQRTHTGEK 104
Query: 197 PFVCEICGQGYRTKTHLLVHVGMHNGIHPFTCHFCNKSFTQKTGLERHLTIHNNEKKHQV 256
P+ C CG+ + HL H H G P+ C C KSF+++ L H H EK ++
Sbjct: 105 PYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYK- 163
Query: 257 SGRFSFNRAREGMPLIHECPTCGKKWRTRSELNKHTKTHS 296
CP CGK + R LN H +TH+
Sbjct: 164 ------------------CPECGKSFSRRDALNVHQRTHT 185
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 92/194 (47%), Gaps = 29/194 (14%)
Query: 59 CDLCGKGFIHLKSYQIHKMIHSGERHIKCEVCSLALLSKSHLKQHMRVHTGERPHECEVC 118
C CGK F H+ H+GE+ KC C + K L +H R HTGE+P++C C
Sbjct: 24 CPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPEC 83
Query: 119 GKRFAKRSNLNAHKKKVTRHTGRDEVPSIKPLKRKRNISFLTGAREGMPLIHECPTCGKK 178
GK F++R+NL AH++ HTG KP + CP CGK
Sbjct: 84 GKSFSQRANLRAHQRT---HTGE------KP--------------------YACPECGKS 114
Query: 179 WRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNGIHPFTCHFCNKSFTQK 238
+ + L H +TH+ +P+ C CG+ + + +L H H G P+ C C KSF+++
Sbjct: 115 FSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRR 174
Query: 239 TGLERHLTIHNNEK 252
L H H +K
Sbjct: 175 DALNVHQRTHTGKK 188
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 90/200 (45%), Gaps = 37/200 (18%)
Query: 273 HECPTCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNGIHPFTCH 332
+ CP CGK + L +H +TH+ +P+ C CG+ + K L H H G P+ C
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP 81
Query: 333 FCNKSFTQKTGLERHLTIHNNEKKHQSGRRQKRNQQHDRQRSESDTTLAEEDNLFHSTPI 392
C KSF+Q+ L H H EK
Sbjct: 82 ECGKSFSQRANLRAHQRTHTGEK------------------------------------P 105
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGERRFKCDICGQALTTKPKLNDHMLLHTGEKPHECN 452
+ C CG+ F+ L H+ HTGE+ +KC CG++ + + L+ H HTGEKP++C
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCP 165
Query: 453 VCGARFAKKWNMQVHKQKVH 472
CG F+++ + VH Q+ H
Sbjct: 166 ECGKSFSRRDALNVH-QRTH 184
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 95/234 (40%), Gaps = 55/234 (23%)
Query: 214 LVHVGMHNGIHPFTCHFCNKSFTQKTGLERHLTIHNNEKKHQVSGRFSFNRAREGMPLIH 273
+ + G P+ C C KSF++ L H H EK ++
Sbjct: 10 VAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYK------------------ 51
Query: 274 ECPTCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNGIHPFTCHF 333
CP CGK + + +L +H +TH+ +P+ C CG+ + + +L H H G P+ C
Sbjct: 52 -CPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPE 110
Query: 334 CNKSFTQKTGLERHLTIHNNEKKHQSGRRQKRNQQHDRQRSESDTTLAEEDNLFHSTPIF 393
C KSF+Q L H H EK +
Sbjct: 111 CGKSFSQLAHLRAHQRTHTGEK------------------------------------PY 134
Query: 394 QCHLCGRCFNSPTTLTQHKIVHTGERRFKCDICGQALTTKPKLNDHMLLHTGEK 447
+C CG+ F+ L H+ HTGE+ +KC CG++ + + LN H HTG+K
Sbjct: 135 KCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 79/165 (47%), Gaps = 29/165 (17%)
Query: 58 RCDLCGKGFIHLKSYQIHKMIHSGERHIKCEVCSLALLSKSHLKQHMRVHTGERPHECEV 117
+C CGK F K H+ H+GE+ KC C + +++L+ H R HTGE+P+ C
Sbjct: 51 KCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPE 110
Query: 118 CGKRFAKRSNLNAHKKKVTRHTGRDEVPSIKPLKRKRNISFLTGAREGMPLIHECPTCGK 177
CGK F++ ++L AH++ HTG KP K CP CGK
Sbjct: 111 CGKSFSQLAHLRAHQRT---HTGE------KPYK--------------------CPECGK 141
Query: 178 KWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNG 222
+ L+ H +TH+ +P+ C CG+ + + L VH H G
Sbjct: 142 SFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 402 FNSPTTLTQHKIVHTGERRFKCDICGQALTTKPKLNDHMLLHTGEKPHECNVCGARFAKK 461
F S +++ Q + GE+ + C CG++ + L +H HTGEKP++C CG F+ K
Sbjct: 4 FGSSSSVAQ-AALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDK 62
Query: 462 WNMQVHKQKVH 472
++ H Q+ H
Sbjct: 63 KDLTRH-QRTH 72
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 58 RCDLCGKGFIHLKSYQIHKMIHSGERHIKCEVCSLALLSKSHLKQHMRVHTGER 111
+C CGK F + H+ H+GE+ KC C + + L H R HTG++
Sbjct: 135 KCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 46/78 (58%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGERRFKCDICGQALTTKPKLNDHMLLHTGEKPHECN 452
F C +CG+ F +TL+ H ++H+ R + C CG+ K + H +HTGEKPH+C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 453 VCGARFAKKWNMQVHKQK 470
VCG F++ N+ H +K
Sbjct: 62 VCGKAFSQSSNLITHSRK 79
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 59 CDLCGKGFIHLKSYQIHKMIHSGERHIKCEVCSLALLSKSHLKQHMRVHTGERPHECEVC 118
C +CGK F + H +IHS R C+ C KS +K+H +HTGE+PH+C+VC
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 119 GKRFAKRSNLNAHKKKVTRHTG 140
GK F++ SNL H +K HTG
Sbjct: 64 GKAFSQSSNLITHSRK---HTG 82
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%)
Query: 171 ECPTCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNGIHPFTCHF 230
+C CGK ++ S L+ H HSD RP+ C+ CG+ + K+ + H +H G P C
Sbjct: 3 DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV 62
Query: 231 CNKSFTQKTGLERH 244
C K+F+Q + L H
Sbjct: 63 CGKAFSQSSNLITH 76
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%)
Query: 274 ECPTCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNGIHPFTCHF 333
+C CGK ++ S L+ H HSD RP+ C+ CG+ + K+ + H +H G P C
Sbjct: 3 DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV 62
Query: 334 CNKSFTQKTGLERH 347
C K+F+Q + L H
Sbjct: 63 CGKAFSQSSNLITH 76
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 19/99 (19%)
Query: 198 FVCEICGQGYRTKTHLLVHVGMHNGIHPFTCHFCNKSFTQKTGLERHLTIHNNEKKHQVS 257
F C+ICG+ ++ + L H+ +H+ P+ C +C K F QK+ +++H IH EK
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKP---- 57
Query: 258 GRFSFNRAREGMPLIHECPTCGKKWRTRSELNKHTKTHS 296
H+C CGK + S L H++ H+
Sbjct: 58 ---------------HKCQVCGKAFSQSSNLITHSRKHT 81
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 19/100 (19%)
Query: 226 FTCHFCNKSFTQKTGLERHLTIHNNEKKHQVSGRFSFNRAREGMPLIHECPTCGKKWRTR 285
F C C KSF + + L HL IH++ + + C CGK++ +
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPY-------------------PCQYCGKRFHQK 42
Query: 286 SELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNG 325
S++ KHT H+ +P C++CG+ + ++L+ H H G
Sbjct: 43 SDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 36/117 (30%)
Query: 301 FVCEICGQGYRTKTHLLVHVGMHNGIHPFTCHFCNKSFTQKTGLERHLTIHNNEKKHQSG 360
F C+ICG+ ++ + L H+ +H+ P+ C +C K F QK+ +++H IH EK H
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPH--- 58
Query: 361 RRQKRNQQHDRQRSESDTTLAEEDNLFHSTPIFQCHLCGRCFNSPTTLTQHKIVHTG 417
+C +CG+ F+ + L H HTG
Sbjct: 59 ---------------------------------KCQVCGKAFSQSSNLITHSRKHTG 82
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 46/117 (39%), Gaps = 36/117 (30%)
Query: 329 FTCHFCNKSFTQKTGLERHLTIHNNEKKHQSGRRQKRNQQHDRQRSESDTTLAEEDNLFH 388
F C C KSF + + L HL IH++
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSD----------------------------------- 26
Query: 389 STPIFQCHLCGRCFNSPTTLTQHKIVHTGERRFKCDICGQALTTKPKLNDHMLLHTG 445
T + C CG+ F+ + + +H +HTGE+ KC +CG+A + L H HTG
Sbjct: 27 -TRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 29/109 (26%)
Query: 114 ECEVCGKRFAKRSNLNAHKKKVTRHTGRDEVPSIKPLKRKRNISFLTGAREGMPLIHECP 173
+C++CGK F + S L+ H + H+ P C
Sbjct: 3 DCKICGKSFKRSSTLSTH---LLIHSDTRPYP--------------------------CQ 33
Query: 174 TCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNG 222
CGK++ +S++ KHT H+ +P C++CG+ + ++L+ H H G
Sbjct: 34 YCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%)
Query: 48 LLINEIAKYTRCDLCGKGFIHLKSYQIHKMIHSGERHIKCEVCSLALLSKSHLKQHMRVH 107
LLI+ + C CGK F + H IH+GE+ KC+VC A S+L H R H
Sbjct: 21 LLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH 80
Query: 108 TG 109
TG
Sbjct: 81 TG 82
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%)
Query: 166 MPLIHECPTCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNGIHP 225
M ++CP CGK + S L KH +TH+ +P+ C CG+ + + L H H G P
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 226 FTCHFCNKSFTQKTGLERHLTIHNNEK 252
+ C C KSF++ L RH H N+K
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%)
Query: 269 MPLIHECPTCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNGIHP 328
M ++CP CGK + S L KH +TH+ +P+ C CG+ + + L H H G P
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 329 FTCHFCNKSFTQKTGLERHLTIHNNEK 355
+ C C KSF++ L RH H N+K
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 48/81 (59%)
Query: 53 IAKYTRCDLCGKGFIHLKSYQIHKMIHSGERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
+ K +C CGK F + Q H+ H+GE+ KC C + S L++H R HTGE+P
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 113 HECEVCGKRFAKRSNLNAHKK 133
++C CGK F++ +L+ H++
Sbjct: 61 YKCPECGKSFSRSDHLSRHQR 81
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGERRFKCDICGQALTTKPKLNDHMLLHTGEKPHECN 452
++C CG+ F+ + L +H+ HTGE+ +KC CG++ + L H HTGEKP++C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 453 VCGARFAKKWNMQVHKQKVH 472
CG F++ ++ H Q+ H
Sbjct: 65 ECGKSFSRSDHLSRH-QRTH 83
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 29/115 (25%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERPHECEVCGKRFAKRSNLNAHKKKVTRHTGR 141
E+ KC C + S+L++H R HTGE+P++C CGK F++ S+L H++ HTG
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRT---HTGE 58
Query: 142 DEVPSIKPLKRKRNISFLTGAREGMPLIHECPTCGKKWRTRSELNKHTKTHSDLR 196
KP K CP CGK + L++H +TH + +
Sbjct: 59 ------KPYK--------------------CPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 19/104 (18%)
Query: 196 RPFVCEICGQGYRTKTHLLVHVGMHNGIHPFTCHFCNKSFTQKTGLERHLTIHNNEKKHQ 255
+P+ C CG+ + ++L H H G P+ C C KSF+Q + L++H H EK
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEK--- 59
Query: 256 VSGRFSFNRAREGMPLIHECPTCGKKWRTRSELNKHTKTHSDLR 299
++CP CGK + L++H +TH + +
Sbjct: 60 ----------------PYKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 36/120 (30%)
Query: 328 PFTCHFCNKSFTQKTGLERHLTIHNNEKKHQSGRRQKRNQQHDRQRSESDTTLAEEDNLF 387
P+ C C KSF+Q + L++H H EK
Sbjct: 4 PYKCPECGKSFSQSSNLQKHQRTHTGEK-------------------------------- 31
Query: 388 HSTPIFQCHLCGRCFNSPTTLTQHKIVHTGERRFKCDICGQALTTKPKLNDHMLLHTGEK 447
++C CG+ F+ + L +H+ HTGE+ +KC CG++ + L+ H H +K
Sbjct: 32 ----PYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKPHECNVCGARFAKKWNMQVHKQKVH 472
E+ +KC CG++ + L H HTGEKP++C CG F++ ++Q H Q+ H
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKH-QRTH 55
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 299 RPFVCEICGQGYRTKTHLLVHVGMHNGIHPFTCHFCNKSFTQKTGLERHLTIHNNEKKHQ 358
+P+ C CG+ + ++L H H G P+ C C KSF+Q + L++H H EK ++
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 58 RCDLCGKGFIHLKSYQIHKMIHSGERHIKCEVCSLALLSKSHLKQHMRVHTGER 111
+C CGK F Q H+ H+GE+ KC C + HL +H R H ++
Sbjct: 34 KCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 446 EKPHECNVCGARFAKKWNMQVHKQKVHGPDVRGTTESQLGMQVSSGGEKKDRAVTKQKFW 505
EKP++C CG F++ N+Q H++ G E SS +K R T +K +
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 506 Q 506
+
Sbjct: 62 K 62
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 58/132 (43%), Gaps = 24/132 (18%)
Query: 231 CNKSFTQKTGLERHLTIHNNEKKHQVSGRFSFNRAREGMPLIHECPTCGKKWRTRSELNK 290
C K F + + +HL H P +H C CGK + S+L +
Sbjct: 13 CTKMFRDNSAMRKHLHTHG--------------------PRVHVCAECGKAFVESSKLKR 52
Query: 291 HTKTHSDLRPFVC--EICGQGYRTKTHLLVHVGMHNGIHPFTCHF--CNKSFTQKTGLER 346
H H+ +PF C E CG+ + +L HV +H G P+ C F CNK F Q T L+
Sbjct: 53 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKS 112
Query: 347 HLTIHNNEKKHQ 358
H+ H K +Q
Sbjct: 113 HILTHAKAKNNQ 124
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 167 PLIHECPTCGKKWRTRSELNKHTKTHSDLRPFVC--EICGQGYRTKTHLLVHVGMHNGIH 224
P +H C CGK + S+L +H H+ +PF C E CG+ + +L HV +H G
Sbjct: 32 PRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDR 91
Query: 225 PFTCHF--CNKSFTQKTGLERHLTIHNNEKKHQ 255
P+ C F CNK F Q T L+ H+ H K +Q
Sbjct: 92 PYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 4/77 (5%)
Query: 59 CDLCGKGFIHLKSYQIHKMIHSGERHIKC--EVCSLALLSKSHLKQHMRVHTGERPHEC- 115
C CGK F+ + H+++H+GE+ +C E C +L+ H+R+HTG+RP+ C
Sbjct: 37 CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCP 96
Query: 116 -EVCGKRFAKRSNLNAH 131
+ C K+FA+ +NL +H
Sbjct: 97 FDGCNKKFAQSTNLKSH 113
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 388 HSTPIFQCHLCGRCFNSPTTLTQHKIVHTGERRFKCDI--CGQALTTKPKLNDHMLLHTG 445
H + C CG+ F + L +H++VHTGE+ F+C CG+ + L H+ +HTG
Sbjct: 30 HGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTG 89
Query: 446 EKPHEC--NVCGARFAKKWNMQVH 467
++P+ C + C +FA+ N++ H
Sbjct: 90 DRPYVCPFDGCNKKFAQSTNLKSH 113
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 398 CGRCFNSPTTLTQHKIVHTGERRFKCDICGQALTTKPKLNDHMLLHTGEKPHECNV--CG 455
C + F + + +H H G R C CG+A KL H L+HTGEKP +C CG
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 456 ARFAKKWNMQVH 467
RF+ +N++ H
Sbjct: 72 KRFSLDFNLRTH 83
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 62 CGKGFIHLKSYQIHKMIHSGERHIKCEVCSLALLSKSHLKQHMRVHTGERPHEC--EVCG 119
C K F + + H H H+ C C A + S LK+H VHTGE+P +C E CG
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHV-CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 120 KRFAKRSNLNAHKKKVTRHTGRDEVPSIKPL 150
KRF+ NL H V HTG + P + P
Sbjct: 72 KRFSLDFNLRTH---VRIHTG--DRPYVCPF 97
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%)
Query: 175 CGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNGIHPFTCHFCNKS 234
CGK + +S+ ++H H LRP+ C +CG+ ++ K HL+ H+ +H GI P+ C+ C K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 235 FTQKTGLERHLT 246
F + RH+T
Sbjct: 75 FMWRDSFHRHVT 86
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%)
Query: 278 CGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNGIHPFTCHFCNKS 337
CGK + +S+ ++H H LRP+ C +CG+ ++ K HL+ H+ +H GI P+ C+ C K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 338 FTQKTGLERHLT 349
F + RH+T
Sbjct: 75 FMWRDSFHRHVT 86
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 62 CGKGFIHLKSYQIHKMIHSGERHIKCEVCSLALLSKSHLKQHMRVHTGERPHECEVCGKR 121
CGK F H H +H G R C VC K HL HM++HTG +P+EC +C KR
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 122 FAKRSNLNAHKKKVTRHTGRDEVPSIKPLKRKRNISFLTGAREG 165
F R + + H T+ S + K ++N + +G G
Sbjct: 75 FMWRDSFHRHVTSCTK--------SYEAAKAEQNTTEASGPSSG 110
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 392 IFQCHLCGRCFNSPTTLTQHKIVHTGERRFKCDICGQALTTKPKLNDHMLLHTGEKPHEC 451
++ C CG+ F + +H +H G R + C +CG+ K L HM +HTG KP+EC
Sbjct: 10 LYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYEC 68
Query: 452 NVCGARFAKKWNMQVHK 468
N+C RF W H+
Sbjct: 69 NICAKRFM--WRDSFHR 83
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 19/90 (21%)
Query: 231 CNKSFTQKTGLERHLTIHNNEKKHQVSGRFSFNRAREGMPLIHECPTCGKKWRTRSELNK 290
C KSFT K+ +RH+++H + + C CGKK++ + L
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYG-------------------CGVCGKKFKMKHHLVG 55
Query: 291 HTKTHSDLRPFVCEICGQGYRTKTHLLVHV 320
H K H+ ++P+ C IC + + + HV
Sbjct: 56 HMKIHTGIKPYECNICAKRFMWRDSFHRHV 85
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 19/92 (20%)
Query: 203 CGQGYRTKTHLLVHVGMHNGIHPFTCHFCNKSFTQKTGLERHLTIHNNEKKHQVSGRFSF 262
CG+ + K+ H+ MH G+ P+ C C K F K L H+ IH K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP--------- 65
Query: 263 NRAREGMPLIHECPTCGKKWRTRSELNKHTKT 294
+EC C K++ R ++H +
Sbjct: 66 ----------YECNICAKRFMWRDSFHRHVTS 87
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 151 KRKRNISFLTGAREGMPLIHECPTCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTK 210
+R R++S G R + C CGKK++ + L H K H+ ++P+ C IC + + +
Sbjct: 24 QRDRHMSMHLGLRP-----YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWR 78
Query: 211 THLLVHV 217
HV
Sbjct: 79 DSFHRHV 85
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%)
Query: 306 CGQGYRTKTHLLVHVGMHNGIHPFTCHFCNKSFTQKTGLERHLTIHNNEKKHQSGRRQKR 365
CG+ + K+ H+ MH G+ P+ C C K F K L H+ IH K ++ KR
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 366 NQQHD 370
D
Sbjct: 75 FMWRD 79
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 36/107 (33%)
Query: 334 CNKSFTQKTGLERHLTIHNNEKKHQSGRRQKRNQQHDRQRSESDTTLAEEDNLFHSTPIF 393
C KSFT K+ +RH+++H + +
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRP------------------------------------Y 38
Query: 394 QCHLCGRCFNSPTTLTQHKIVHTGERRFKCDICGQALTTKPKLNDHM 440
C +CG+ F L H +HTG + ++C+IC + + + H+
Sbjct: 39 GCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV 85
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 40/76 (52%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGERRFKCDICGQALTTKPKLNDHMLLHTGEKPHECN 452
F C CGR F L H+ HT ER + CDIC +A + L DH +H+ EKP +C
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 453 VCGARFAKKWNMQVHK 468
CG F + + VHK
Sbjct: 78 ECGKGFCQSRTLAVHK 93
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 41/77 (53%)
Query: 172 CPTCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNGIHPFTCHFC 231
C CG+ + L H +TH+D RP+ C+IC + +R + HL H +H+ PF C C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 232 NKSFTQKTGLERHLTIH 248
K F Q L H T+H
Sbjct: 80 GKGFCQSRTLAVHKTLH 96
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 41/77 (53%)
Query: 275 CPTCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNGIHPFTCHFC 334
C CG+ + L H +TH+D RP+ C+IC + +R + HL H +H+ PF C C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 335 NKSFTQKTGLERHLTIH 351
K F Q L H T+H
Sbjct: 80 GKGFCQSRTLAVHKTLH 96
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 59 CDLCGKGFIHLKSYQIHKMIHSGERHIKCEVCSLALLSKSHLKQHMRVHTGERPHECEVC 118
C CG+ F + IH+ H+ ER C++C A + HL+ H +H+ E+P +C+ C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 119 GKRFAKRSNLNAHK 132
GK F + L HK
Sbjct: 80 GKGFCQSRTLAVHK 93
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 196 RPFVCEICGQGYRTKTHLLVHVGMHNGIHPFTCHFCNKSFTQKTGLERHLTIHNNEK 252
+ F+C+ CG+ + +LL+H H P+TC C+K+F ++ L H IH+ EK
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEK 72
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 299 RPFVCEICGQGYRTKTHLLVHVGMHNGIHPFTCHFCNKSFTQKTGLERHLTIHNNEK 355
+ F+C+ CG+ + +LL+H H P+TC C+K+F ++ L H IH+ EK
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEK 72
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 19/98 (19%)
Query: 226 FTCHFCNKSFTQKTGLERHLTIHNNEKKHQVSGRFSFNRAREGMPLIHECPTCGKKWRTR 285
F C FC + FT+ L H H +E+ + C C K +R +
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYT-------------------CDICHKAFRRQ 58
Query: 286 SELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMH 323
L H HS +PF C+ CG+G+ L VH +H
Sbjct: 59 DHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 42/106 (39%), Gaps = 29/106 (27%)
Query: 115 CEVCGKRFAKRSNLNAHKKKVTRHTGRDEVPSIKPLKRKRNISFLTGAREGMPLIHECPT 174
C+ CG+ F K NL H++ T DE P + C
Sbjct: 20 CKFCGRHFTKSYNLLIHER-----THTDERP------------------------YTCDI 50
Query: 175 CGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMH 220
C K +R + L H HS +PF C+ CG+G+ L VH +H
Sbjct: 51 CHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 38/115 (33%), Gaps = 36/115 (31%)
Query: 329 FTCHFCNKSFTQKTGLERHLTIHNNEKKHQSGRRQKRNQQHDRQRSESDTTLAEEDNLFH 388
F C FC + FT+ L H H +E+
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERP-------------------------------- 45
Query: 389 STPIFQCHLCGRCFNSPTTLTQHKIVHTGERRFKCDICGQALTTKPKLNDHMLLH 443
+ C +C + F L H+ +H+ E+ FKC CG+ L H LH
Sbjct: 46 ----YTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKPHECNVCGARFAKKWNMQVHK 468
++ F C CG+ T L H HT E+P+ C++C F ++ +++ H+
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHR 65
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 59 CDLCGKGFIHLKSYQIHKMIHSGERHIKCEVCSLALLSKSHLKQHMRVH 107
CD+C K F + H+ IHS E+ KC+ C L H +H
Sbjct: 48 CDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 3 FAGKNNNLVKIYLLVIDEKVLIVRK--LVDNGHKIFLCNTEPGMPDSLLINEIAKYTRCD 60
F G++ K Y L+I E+ + D HK F + + D I+ K +C
Sbjct: 22 FCGRH--FTKSYNLLIHERTHTDERPYTCDICHKAF--RRQDHLRDHRYIHSKEKPFKCQ 77
Query: 61 LCGKGFIHLKSYQIHKMIH 79
CGKGF ++ +HK +H
Sbjct: 78 ECGKGFCQSRTLAVHKTLH 96
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 166 MPLIHECP--TCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNGI 223
M + CP +C +++ +EL +H + H+ +PF C IC + + HL H+ H G
Sbjct: 1 MERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 224 HPFTCHFCNKSFTQKTGLERHLTIHNNEK 252
PF C C + F + +RH IH +K
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 269 MPLIHECP--TCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNGI 326
M + CP +C +++ +EL +H + H+ +PF C IC + + HL H+ H G
Sbjct: 1 MERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 327 HPFTCHFCNKSFTQKTGLERHLTIHNNEK 355
PF C C + F + +RH IH +K
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 398 CGRCFNSPTTLTQHKIVHTGERRFKCDICGQALTTKPKLNDHMLLHTGEKPHECNVCGAR 457
C R F+ LT+H +HTG++ F+C IC + + L H+ HTGEKP C++CG +
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 458 FAKKWNMQVHKQKVH 472
FA+ + H K+H
Sbjct: 72 FARSDERKRH-TKIH 85
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%)
Query: 62 CGKGFIHLKSYQIHKMIHSGERHIKCEVCSLALLSKSHLKQHMRVHTGERPHECEVCGKR 121
C + F H IH+G++ +C +C HL H+R HTGE+P C++CG++
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 122 FAKRSNLNAHKK 133
FA+ H K
Sbjct: 72 FARSDERKRHTK 83
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 46/122 (37%), Gaps = 38/122 (31%)
Query: 328 PFTCHF--CNKSFTQKTGLERHLTIHNNEKKHQSGRRQKRNQQHDRQRSESDTTLAEEDN 385
P+ C C++ F++ L RH+ IH +K
Sbjct: 4 PYACPVESCDRRFSRSAELTRHIRIHTGQKP----------------------------- 34
Query: 386 LFHSTPIFQCHLCGRCFNSPTTLTQHKIVHTGERRFKCDICGQALTTKPKLNDHMLLHTG 445
FQC +C R F+ LT H HTGE+ F CDICG+ + H +H
Sbjct: 35 -------FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLR 87
Query: 446 EK 447
+K
Sbjct: 88 QK 89
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 31/113 (27%)
Query: 82 ERHIKC--EVCSLALLSKSHLKQHMRVHTGERPHECEVCGKRFAKRSNLNAHKKKVTRHT 139
ER C E C + L +H+R+HTG++P +C +C + F++ +L H + HT
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH---IRTHT 58
Query: 140 GRDEVPSIKPLKRKRNISFLTGAREGMPLIHECPTCGKKWRTRSELNKHTKTH 192
G KP C CG+K+ E +HTK H
Sbjct: 59 GE------KPF--------------------ACDICGRKFARSDERKRHTKIH 85
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 21/101 (20%)
Query: 225 PFTCHF--CNKSFTQKTGLERHLTIHNNEKKHQVSGRFSFNRAREGMPLIHECPTCGKKW 282
P+ C C++ F++ L RH+ IH +K Q C C + +
Sbjct: 4 PYACPVESCDRRFSRSAELTRHIRIHTGQKPFQ-------------------CRICMRNF 44
Query: 283 RTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMH 323
L H +TH+ +PF C+ICG+ + H +H
Sbjct: 45 SRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 21/49 (42%)
Query: 59 CDLCGKGFIHLKSYQIHKMIHSGERHIKCEVCSLALLSKSHLKQHMRVH 107
C +C + F H H+GE+ C++C K+H ++H
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 166 MPLIHECP--TCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNGI 223
M + CP +C +++ EL +H + H+ +PF C IC + + HL H+ H G
Sbjct: 1 MERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 224 HPFTCHFCNKSFTQKTGLERHLTIHNNEK 252
PF C C + F + +RH IH +K
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 269 MPLIHECP--TCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNGI 326
M + CP +C +++ EL +H + H+ +PF C IC + + HL H+ H G
Sbjct: 1 MERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 327 HPFTCHFCNKSFTQKTGLERHLTIHNNEK 355
PF C C + F + +RH IH +K
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 398 CGRCFNSPTTLTQHKIVHTGERRFKCDICGQALTTKPKLNDHMLLHTGEKPHECNVCGAR 457
C R F+ LT+H +HTG++ F+C IC + + L H+ HTGEKP C++CG +
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 458 FAKKWNMQVHKQKVH 472
FA+ + H K+H
Sbjct: 72 FARSDERKRH-TKIH 85
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%)
Query: 62 CGKGFIHLKSYQIHKMIHSGERHIKCEVCSLALLSKSHLKQHMRVHTGERPHECEVCGKR 121
C + F H IH+G++ +C +C HL H+R HTGE+P C++CG++
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 122 FAKRSNLNAHKK 133
FA+ H K
Sbjct: 72 FARSDERKRHTK 83
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 46/122 (37%), Gaps = 38/122 (31%)
Query: 328 PFTCHF--CNKSFTQKTGLERHLTIHNNEKKHQSGRRQKRNQQHDRQRSESDTTLAEEDN 385
P+ C C++ F++ L RH+ IH +K
Sbjct: 4 PYACPVESCDRRFSRSDELTRHIRIHTGQKP----------------------------- 34
Query: 386 LFHSTPIFQCHLCGRCFNSPTTLTQHKIVHTGERRFKCDICGQALTTKPKLNDHMLLHTG 445
FQC +C R F+ LT H HTGE+ F CDICG+ + H +H
Sbjct: 35 -------FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLR 87
Query: 446 EK 447
+K
Sbjct: 88 QK 89
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 31/113 (27%)
Query: 82 ERHIKC--EVCSLALLSKSHLKQHMRVHTGERPHECEVCGKRFAKRSNLNAHKKKVTRHT 139
ER C E C L +H+R+HTG++P +C +C + F++ +L H + HT
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH---IRTHT 58
Query: 140 GRDEVPSIKPLKRKRNISFLTGAREGMPLIHECPTCGKKWRTRSELNKHTKTH 192
G KP C CG+K+ E +HTK H
Sbjct: 59 GE------KPF--------------------ACDICGRKFARSDERKRHTKIH 85
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 21/101 (20%)
Query: 225 PFTCHF--CNKSFTQKTGLERHLTIHNNEKKHQVSGRFSFNRAREGMPLIHECPTCGKKW 282
P+ C C++ F++ L RH+ IH +K Q C C + +
Sbjct: 4 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQ-------------------CRICMRNF 44
Query: 283 RTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMH 323
L H +TH+ +PF C+ICG+ + H +H
Sbjct: 45 SRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 21/49 (42%)
Query: 59 CDLCGKGFIHLKSYQIHKMIHSGERHIKCEVCSLALLSKSHLKQHMRVH 107
C +C + F H H+GE+ C++C K+H ++H
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 61/144 (42%), Gaps = 27/144 (18%)
Query: 80 SGERHIKCEVCSLALLSKSHLKQHMRVHTGERPHECEVCGKRFAKRSNLNAHKKKVTRHT 139
SG ++C C LSK +LK H R HTGE+P EC CGK + ++ NL H+ + +
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 140 GRDEVPSIKPLKRKRNISFLTGAREGMPLIHECPTCGKKWRTRSELNKHTKTHSDLRPFV 199
+ C C + +R R EL H +H+ P+
Sbjct: 63 SEQ--------------------------VFTCSVCQETFRRRMELRLHMVSHTGEMPYK 96
Query: 200 CEICGQGYRTKTHLLVH-VGMHNG 222
C C Q + K L H + +H+G
Sbjct: 97 CSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 393 FQCHLCGRCFNSPTTLTQHKI---VHTGERRFKCDICGQALTTKPKLNDHMLLHTGEKPH 449
F+C CG+C+ L +H+ ++ E+ F C +C + + +L HM+ HTGE P+
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPY 95
Query: 450 ECNVCGARFAKKWNMQVHKQKVH-GPD 475
+C+ C +F +K ++Q H K+H GP
Sbjct: 96 KCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 23/130 (17%)
Query: 171 ECPTCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVG---MHNGIHPFT 227
ECPTC KK+ ++ L H + H+ +PF C CG+ Y K +LL H M+ FT
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 228 CHFCNKSFTQKTGLERHLTIHNNEKKHQVSGRFSFNRAREGMPLIHECPTCGKKWRTRSE 287
C C ++F ++ L H+ H E MP ++C +C +++ + +
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGE-----------------MP--YKCSSCSQQFMQKKD 109
Query: 288 LNKH-TKTHS 296
L H K HS
Sbjct: 110 LQSHMIKLHS 119
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 274 ECPTCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVG---MHNGIHPFT 330
ECPTC KK+ ++ L H + H+ +PF C CG+ Y K +LL H M+ FT
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 331 CHFCNKSFTQKTGLERHLTIHNNEKKHQ-SGRRQKRNQQHDRQ 372
C C ++F ++ L H+ H E ++ S Q+ Q+ D Q
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQ 111
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 56/144 (38%), Gaps = 34/144 (23%)
Query: 303 CEICGQGYRTKTHLLVHVGMHNGIHPFTCHFCNKSFTQKTGLERHLTIHNNEKKHQSGRR 362
C C + + +K +L VH H G PF C C K + +K L H
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH--------------- 54
Query: 363 QKRNQQHDRQRSESDTTLAEEDNLFHSTPIFQCHLCGRCFNSPTTLTQHKIVHTGERRFK 422
+ RN + RSE +F C +C F L H + HTGE +K
Sbjct: 55 EARNCMN---RSEQ---------------VFTCSVCQETFRRRMELRLHMVSHTGEMPYK 96
Query: 423 CDICGQALTTKPKLNDHML-LHTG 445
C C Q K L HM+ LH+G
Sbjct: 97 CSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 22/131 (16%)
Query: 221 NGIHPFTCHFCNKSFTQKTGLERHLTIHNNEKKHQVSGRFSFNRAREGMPLIHECPTCGK 280
+G C C+K F K L+ H H EK P ECP CGK
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEK-----------------PF--ECPKCGK 43
Query: 281 KWRTRSELNKHTKTHSDLRP---FVCEICGQGYRTKTHLLVHVGMHNGIHPFTCHFCNKS 337
+ + L +H + R F C +C + +R + L +H+ H G P+ C C++
Sbjct: 44 CYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQ 103
Query: 338 FTQKTGLERHL 348
F QK L+ H+
Sbjct: 104 FMQKKDLQSHM 114
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 59 CDLCGKGFI---HLKSYQIHKMIHSGERHIKCEVCSLALLSKSHLKQHMRVHTGERPHEC 115
C CGK + +L ++ ++ E+ C VC + L+ HM HTGE P++C
Sbjct: 38 CPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKC 97
Query: 116 EVCGKRFAKRSNLNAHKKKVTRHTG 140
C ++F ++ +L +H K+ H+G
Sbjct: 98 SSCSQQFMQKKDLQSHMIKL--HSG 120
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 13/108 (12%)
Query: 416 TGERRFKCDICGQALTTKPKLNDHMLLHTGEKPHECNVCGARFAKKWNM----------- 464
+G +C C + +K L H HTGEKP EC CG + +K N+
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 465 --QVHKQKVHGPDVRGTTESQLGMQVSSGGEKKDRAVTKQKFWQKYDM 510
QV V R E +L M +G + Q+F QK D+
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDL 110
Score = 35.0 bits (79), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 50 INEIAKYTRCDLCGKGFIHLKSYQIHKMIHSGERHIKCEVCSLALLSKSHLKQHM-RVHT 108
+N + C +C + F ++H + H+GE KC CS + K L+ HM ++H+
Sbjct: 60 MNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS 119
Query: 109 G 109
G
Sbjct: 120 G 120
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 50/111 (45%), Gaps = 29/111 (26%)
Query: 112 PHECEVCGKRFAKRSNLNAHKKKVTRHTGRDEVPSIKPLKRKRNISFLTGAREGMPLIHE 171
PH+CEVCGK F+++ L H + HTG +KP K
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRC---HTG------VKPYK-------------------- 38
Query: 172 CPTCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNG 222
C TC S LNKH + HSD RPF C+IC R + L VH+ H G
Sbjct: 39 CKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTG 89
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 58 RCDLCGKGFIHLKSYQIHKMIHSGERHIKCEVCSLALLSKSHLKQHMRVHTGERPHECEV 117
+C++CGK F + H H+G + KC+ C A S L +H+R+H+ ERP +C++
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 118 CGKRFAKRSNLNAHKKKVTRHTGRDEVPS 146
C S L H + HTG D PS
Sbjct: 70 CPYASRNSSQLTVH---LRSHTG-DSGPS 94
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 394 QCHLCGRCFNSPTTLTQHKIVHTGERRFKCDICGQALTTKPKLNDHMLLHTGEKPHECNV 453
+C +CG+CF+ L H HTG + +KC C A LN H+ +H+ E+P +C +
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 454 CGARFAKKWNMQVH 467
C + VH
Sbjct: 70 CPYASRNSSQLTVH 83
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 46/129 (35%), Gaps = 47/129 (36%)
Query: 197 PFVCEICGQGYRTKTHLLVHVGMHNGIHPFTCHFCNKSFTQKTGLERHLTIHNNEKKHQV 256
P CE+CG+ + K L H+ H G+ P+ C C+ + + L +HL IH++E
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE----- 62
Query: 257 SGRFSFNRAREGMPLIHECPTCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHL 316
RPF C+IC R + L
Sbjct: 63 ------------------------------------------RPFKCQICPYASRNSSQL 80
Query: 317 LVHVGMHNG 325
VH+ H G
Sbjct: 81 TVHLRSHTG 89
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%)
Query: 267 EGMPLIHECPTCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNGI 326
G H+C CGK + + +L H + H+ ++P+ C+ C + L H+ +H+
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62
Query: 327 HPFTCHFCNKSFTQKTGLERHLTIHNNEKKHQSG 360
PF C C + + L HL H + SG
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLRSHTGDSGPSSG 96
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%)
Query: 164 EGMPLIHECPTCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNGI 223
G H+C CGK + + +L H + H+ ++P+ C+ C + L H+ +H+
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62
Query: 224 HPFTCHFCNKSFTQKTGLERHLTIHNNE 251
PF C C + + L HL H +
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 43/126 (34%), Gaps = 36/126 (28%)
Query: 321 GMHNGIHPFTCHFCNKSFTQKTGLERHLTIHNNEKKHQSGRRQKRNQQHDRQRSESDTTL 380
G P C C K F++K L+ H+ H K
Sbjct: 1 GSSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKP------------------------ 36
Query: 381 AEEDNLFHSTPIFQCHLCGRCFNSPTTLTQHKIVHTGERRFKCDICGQALTTKPKLNDHM 440
++C C ++L +H +H+ ER FKC IC A +L H+
Sbjct: 37 ------------YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHL 84
Query: 441 LLHTGE 446
HTG+
Sbjct: 85 RSHTGD 90
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 166 MPLIHECP--TCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNGI 223
M + CP +C +++ ++L +H + H+ +PF C IC + + HL H+ H G
Sbjct: 1 MERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 224 HPFTCHFCNKSFTQKTGLERHLTIHNNEK 252
PF C C + F + +RH IH +K
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 269 MPLIHECP--TCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNGI 326
M + CP +C +++ ++L +H + H+ +PF C IC + + HL H+ H G
Sbjct: 1 MERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 327 HPFTCHFCNKSFTQKTGLERHLTIHNNEK 355
PF C C + F + +RH IH +K
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 398 CGRCFNSPTTLTQHKIVHTGERRFKCDICGQALTTKPKLNDHMLLHTGEKPHECNVCGAR 457
C R F+ LT+H +HTG++ F+C IC + + L H+ HTGEKP C++CG +
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 458 FAKKWNMQVHKQKVH 472
FA+ + H K+H
Sbjct: 72 FARSDERKRH-TKIH 85
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%)
Query: 62 CGKGFIHLKSYQIHKMIHSGERHIKCEVCSLALLSKSHLKQHMRVHTGERPHECEVCGKR 121
C + F H IH+G++ +C +C HL H+R HTGE+P C++CG++
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 122 FAKRSNLNAHKK 133
FA+ H K
Sbjct: 72 FARSDERKRHTK 83
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 46/122 (37%), Gaps = 38/122 (31%)
Query: 328 PFTCHF--CNKSFTQKTGLERHLTIHNNEKKHQSGRRQKRNQQHDRQRSESDTTLAEEDN 385
P+ C C++ F++ L RH+ IH +K
Sbjct: 4 PYACPVESCDRRFSRSADLTRHIRIHTGQKP----------------------------- 34
Query: 386 LFHSTPIFQCHLCGRCFNSPTTLTQHKIVHTGERRFKCDICGQALTTKPKLNDHMLLHTG 445
FQC +C R F+ LT H HTGE+ F CDICG+ + H +H
Sbjct: 35 -------FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLR 87
Query: 446 EK 447
+K
Sbjct: 88 QK 89
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 31/113 (27%)
Query: 82 ERHIKC--EVCSLALLSKSHLKQHMRVHTGERPHECEVCGKRFAKRSNLNAHKKKVTRHT 139
ER C E C + L +H+R+HTG++P +C +C + F++ +L H + HT
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH---IRTHT 58
Query: 140 GRDEVPSIKPLKRKRNISFLTGAREGMPLIHECPTCGKKWRTRSELNKHTKTH 192
G KP C CG+K+ E +HTK H
Sbjct: 59 GE------KPF--------------------ACDICGRKFARSDERKRHTKIH 85
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 21/101 (20%)
Query: 225 PFTCHF--CNKSFTQKTGLERHLTIHNNEKKHQVSGRFSFNRAREGMPLIHECPTCGKKW 282
P+ C C++ F++ L RH+ IH +K Q C C + +
Sbjct: 4 PYACPVESCDRRFSRSADLTRHIRIHTGQKPFQ-------------------CRICMRNF 44
Query: 283 RTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMH 323
L H +TH+ +PF C+ICG+ + H +H
Sbjct: 45 SRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 21/49 (42%)
Query: 59 CDLCGKGFIHLKSYQIHKMIHSGERHIKCEVCSLALLSKSHLKQHMRVH 107
C +C + F H H+GE+ C++C K+H ++H
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 166 MPLIHECP--TCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNGI 223
M + CP +C +++ S L +H + H+ +PF C IC + + HL H+ H G
Sbjct: 1 MERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 224 HPFTCHFCNKSFTQKTGLERHLTIHNNEK 252
PF C C + F + +RH IH +K
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 269 MPLIHECP--TCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNGI 326
M + CP +C +++ S L +H + H+ +PF C IC + + HL H+ H G
Sbjct: 1 MERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 327 HPFTCHFCNKSFTQKTGLERHLTIHNNEK 355
PF C C + F + +RH IH +K
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 398 CGRCFNSPTTLTQHKIVHTGERRFKCDICGQALTTKPKLNDHMLLHTGEKPHECNVCGAR 457
C R F+ + LT+H +HTG++ F+C IC + + L H+ HTGEKP C++CG +
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 458 FAKKWNMQVHKQKVH 472
FA+ + H K+H
Sbjct: 72 FARSDERKRH-TKIH 85
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%)
Query: 62 CGKGFIHLKSYQIHKMIHSGERHIKCEVCSLALLSKSHLKQHMRVHTGERPHECEVCGKR 121
C + F + H IH+G++ +C +C HL H+R HTGE+P C++CG++
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 122 FAKRSNLNAHKK 133
FA+ H K
Sbjct: 72 FARSDERKRHTK 83
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 46/122 (37%), Gaps = 38/122 (31%)
Query: 328 PFTCHF--CNKSFTQKTGLERHLTIHNNEKKHQSGRRQKRNQQHDRQRSESDTTLAEEDN 385
P+ C C++ F+ + L RH+ IH +K
Sbjct: 4 PYACPVESCDRRFSDSSNLTRHIRIHTGQKP----------------------------- 34
Query: 386 LFHSTPIFQCHLCGRCFNSPTTLTQHKIVHTGERRFKCDICGQALTTKPKLNDHMLLHTG 445
FQC +C R F+ LT H HTGE+ F CDICG+ + H +H
Sbjct: 35 -------FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLR 87
Query: 446 EK 447
+K
Sbjct: 88 QK 89
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 31/113 (27%)
Query: 82 ERHIKC--EVCSLALLSKSHLKQHMRVHTGERPHECEVCGKRFAKRSNLNAHKKKVTRHT 139
ER C E C S+L +H+R+HTG++P +C +C + F++ +L H + HT
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH---IRTHT 58
Query: 140 GRDEVPSIKPLKRKRNISFLTGAREGMPLIHECPTCGKKWRTRSELNKHTKTH 192
G KP C CG+K+ E +HTK H
Sbjct: 59 GE------KPF--------------------ACDICGRKFARSDERKRHTKIH 85
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 21/101 (20%)
Query: 225 PFTCHF--CNKSFTQKTGLERHLTIHNNEKKHQVSGRFSFNRAREGMPLIHECPTCGKKW 282
P+ C C++ F+ + L RH+ IH +K Q C C + +
Sbjct: 4 PYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQ-------------------CRICMRNF 44
Query: 283 RTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMH 323
L H +TH+ +PF C+ICG+ + H +H
Sbjct: 45 SRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 21/49 (42%)
Query: 59 CDLCGKGFIHLKSYQIHKMIHSGERHIKCEVCSLALLSKSHLKQHMRVH 107
C +C + F H H+GE+ C++C K+H ++H
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 39/62 (62%)
Query: 398 CGRCFNSPTTLTQHKIVHTGERRFKCDICGQALTTKPKLNDHMLLHTGEKPHECNVCGAR 457
C R F+ T L H +HTG++ F+C IC + + + LN H+ HTGEKP C++CG +
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRK 71
Query: 458 FA 459
FA
Sbjct: 72 FA 73
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 166 MPLIHECP--TCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNGI 223
M + CP +C +++ ++ L+ H + H+ +PF C IC + + + L H+ H G
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE 60
Query: 224 HPFTCHFCNKSFTQKTGLERHLTIHNNEK 252
PF C C + F RH IH +K
Sbjct: 61 KPFACDICGRKFATLHTRTRHTKIHLRQK 89
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 269 MPLIHECP--TCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNGI 326
M + CP +C +++ ++ L+ H + H+ +PF C IC + + + L H+ H G
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE 60
Query: 327 HPFTCHFCNKSFTQKTGLERHLTIHNNEK 355
PF C C + F RH IH +K
Sbjct: 61 KPFACDICGRKFATLHTRTRHTKIHLRQK 89
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%)
Query: 62 CGKGFIHLKSYQIHKMIHSGERHIKCEVCSLALLSKSHLKQHMRVHTGERPHECEVCGKR 121
C + F + H IH+G++ +C +C ++ L H+R HTGE+P C++CG++
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRK 71
Query: 122 FA 123
FA
Sbjct: 72 FA 73
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 21/90 (23%)
Query: 225 PFTCHF--CNKSFTQKTGLERHLTIHNNEKKHQVSGRFSFNRAREGMPLIHECPTCGKKW 282
P+ C C++ F+QKT L+ H+ IH +K Q C C + +
Sbjct: 4 PYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQ-------------------CRICMRNF 44
Query: 283 RTRSELNKHTKTHSDLRPFVCEICGQGYRT 312
++ LN H +TH+ +PF C+ICG+ + T
Sbjct: 45 SQQASLNAHIRTHTGEKPFACDICGRKFAT 74
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 31/113 (27%)
Query: 82 ERHIKCEV--CSLALLSKSHLKQHMRVHTGERPHECEVCGKRFAKRSNLNAHKKKVTRHT 139
ER C V C K++L H+R+HTG++P +C +C + F+++++LNAH + HT
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAH---IRTHT 58
Query: 140 GRDEVPSIKPLKRKRNISFLTGAREGMPLIHECPTCGKKWRTRSELNKHTKTH 192
G KP C CG+K+ T +HTK H
Sbjct: 59 GE------KPF--------------------ACDICGRKFATLHTRTRHTKIH 85
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 48/122 (39%), Gaps = 38/122 (31%)
Query: 328 PFTCHF--CNKSFTQKTGLERHLTIHNNEKKHQSGRRQKRNQQHDRQRSESDTTLAEEDN 385
P+ C C++ F+QKT L+ H+ IH +K
Sbjct: 4 PYACPVESCDRRFSQKTNLDTHIRIHTGQKP----------------------------- 34
Query: 386 LFHSTPIFQCHLCGRCFNSPTTLTQHKIVHTGERRFKCDICGQALTTKPKLNDHMLLHTG 445
FQC +C R F+ +L H HTGE+ F CDICG+ T H +H
Sbjct: 35 -------FQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIHLR 87
Query: 446 EK 447
+K
Sbjct: 88 QK 89
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 23/50 (46%)
Query: 58 RCDLCGKGFIHLKSYQIHKMIHSGERHIKCEVCSLALLSKSHLKQHMRVH 107
+C +C + F S H H+GE+ C++C + +H ++H
Sbjct: 36 QCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIH 85
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 59 CDLCGKGFIHLKSYQIHKMIHSGERHIKCEVCSLALLSKSHLKQHMRVHTGE--RPHECE 116
C++CGK F + HK+ HSGE+ C VC L K + H+R H G +P+ C+
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 117 VCGKRFAKRSNLNAHKKKVTRHTG 140
CGK F++ +LN H K+V H+G
Sbjct: 70 SCGKGFSRPDHLNGHIKQV--HSG 91
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 395 CHLCGRCFNSPTTLTQHKIVHTGERRFKCDICGQALTTKPKLNDHMLLHTGE--KPHECN 452
C +CG+ F L +HK+ H+GE+ + C +CG K +++ H+ H G KP+ C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 453 VCGARFAKKWNMQVHKQKVH-GP 474
CG F++ ++ H ++VH GP
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSGP 92
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 171 ECPTCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNGI--HPFTC 228
C CGK +R LN+H +HS +P+ C +CG ++ K + HV H+G P+ C
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 229 HFCNKSFTQKTGLERHL 245
C K F++ L H+
Sbjct: 69 QSCGKGFSRPDHLNGHI 85
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 274 ECPTCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNGI--HPFTC 331
C CGK +R LN+H +HS +P+ C +CG ++ K + HV H+G P+ C
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 332 HFCNKSFTQKTGLERHL 348
C K F++ L H+
Sbjct: 69 QSCGKGFSRPDHLNGHI 85
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%)
Query: 416 TGERRFKCDICGQALTTKPKLNDHMLLHTGEKPHECNVCGARFAKKWNMQVH 467
+G C+ICG+ LN H L H+GEKP+ C VCG RF +K M H
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYH 54
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 44/111 (39%), Gaps = 27/111 (24%)
Query: 80 SGERHIKCEVCSLALLSKSHLKQHMRVHTGERPHECEVCGKRFAKRSNLNAHKKKVTRHT 139
SG + CE+C HL +H H+GE+P+ C VCG RF ++ ++ H V H
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYH---VRSHD 59
Query: 140 GRDEVPSIKPLKRKRNISFLTGAREGMPLIHECPTCGKKWRTRSELNKHTK 190
G P I C +CGK + LN H K
Sbjct: 60 GSVGKPYI------------------------CQSCGKGFSRPDHLNGHIK 86
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 21/102 (20%)
Query: 221 NGIHPFTCHFCNKSFTQKTGLERHLTIHNNEKKHQVSGRFSFNRAREGMPLIHECPTCGK 280
+G C C K F L RH H+ EK + CP CG
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPY-------------------SCPVCGL 43
Query: 281 KWRTRSELNKHTKTH--SDLRPFVCEICGQGYRTKTHLLVHV 320
+++ + ++ H ++H S +P++C+ CG+G+ HL H+
Sbjct: 44 RFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHI 85
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 31/112 (27%)
Query: 108 TGERPHECEVCGKRFAKRSNLNAHKKKVTRHTGRDEVPSIKPLKRKRNISFLTGAREGMP 167
+G CE+CGK F +LN HK H+G KP
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHK---LSHSGE------KP------------------ 35
Query: 168 LIHECPTCGKKWRTRSELNKHTKTH--SDLRPFVCEICGQGYRTKTHLLVHV 217
+ CP CG +++ + ++ H ++H S +P++C+ CG+G+ HL H+
Sbjct: 36 --YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHI 85
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 17/95 (17%)
Query: 199 VCEICGQGYRTKTHLLVHVGMHNGIHPFTCHFCNKSFTQKTGLERHLTIHNNEKKHQVSG 258
CEICG+ +R HL H H+G P++C C F +K + H+ H+
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS------- 61
Query: 259 RFSFNRAREGMPLIHECPTCGKKWRTRSELNKHTK 293
G P I C +CGK + LN H K
Sbjct: 62 --------VGKPYI--CQSCGKGFSRPDHLNGHIK 86
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 302 VCEICGQGYRTKTHLLVHVGMHNGIHPFTCHFCNKSFTQKTGLERHLTIHNNE 354
CEICG+ +R HL H H+G P++C C F +K + H+ H+
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 13/98 (13%)
Query: 324 NGIHPFTCHFCNKSFTQKTGLERHLTIHNNEKKHQ---SGRRQKRNQQHDRQRSESDTTL 380
+G C C K F L RH H+ EK + G R KR + D ++
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 381 AEEDNLFHSTPIFQCHLCGRCFNSPTTLTQH-KIVHTG 417
+ + C CG+ F+ P L H K VH+G
Sbjct: 63 GKP---------YICQSCGKGFSRPDHLNGHIKQVHSG 91
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 170 HECP--TCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNGIHPFT 227
+ CP +C +++ EL +H + H+ +PF C IC + + HL H+ H G PF
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 228 CHFCNKSFTQKTGLERHLTIH 248
C C + F + +RH IH
Sbjct: 64 CDICGRKFARSDERKRHTKIH 84
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 273 HECP--TCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNGIHPFT 330
+ CP +C +++ EL +H + H+ +PF C IC + + HL H+ H G PF
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 331 CHFCNKSFTQKTGLERHLTIH 351
C C + F + +RH IH
Sbjct: 64 CDICGRKFARSDERKRHTKIH 84
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 398 CGRCFNSPTTLTQHKIVHTGERRFKCDICGQALTTKPKLNDHMLLHTGEKPHECNVCGAR 457
C R F+ LT+H +HTG++ F+C IC + + L H+ HTGEKP C++CG +
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 70
Query: 458 FAKKWNMQVHKQKVH 472
FA+ + H K+H
Sbjct: 71 FARSDERKRH-TKIH 84
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%)
Query: 62 CGKGFIHLKSYQIHKMIHSGERHIKCEVCSLALLSKSHLKQHMRVHTGERPHECEVCGKR 121
C + F H IH+G++ +C +C HL H+R HTGE+P C++CG++
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 70
Query: 122 FAKRSNLNAHKK 133
FA+ H K
Sbjct: 71 FARSDERKRHTK 82
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 21/102 (20%)
Query: 196 RPFVC--EICGQGYRTKTHLLVHVGMHNGIHPFTCHFCNKSFTQKTGLERHLTIHNNEKK 253
RP+ C E C + + L H+ +H G PF C C ++F++ L H+ H EK
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK- 60
Query: 254 HQVSGRFSFNRAREGMPLIHECPTCGKKWRTRSELNKHTKTH 295
P C CG+K+ E +HTK H
Sbjct: 61 ----------------PFA--CDICGRKFARSDERKRHTKIH 84
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 44/118 (37%), Gaps = 38/118 (32%)
Query: 328 PFTC--HFCNKSFTQKTGLERHLTIHNNEKKHQSGRRQKRNQQHDRQRSESDTTLAEEDN 385
P+ C C++ F++ L RH+ IH +K
Sbjct: 3 PYACPVESCDRRFSRSDELTRHIRIHTGQKP----------------------------- 33
Query: 386 LFHSTPIFQCHLCGRCFNSPTTLTQHKIVHTGERRFKCDICGQALTTKPKLNDHMLLH 443
FQC +C R F+ LT H HTGE+ F CDICG+ + H +H
Sbjct: 34 -------FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 84
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 31/113 (27%)
Query: 82 ERHIKC--EVCSLALLSKSHLKQHMRVHTGERPHECEVCGKRFAKRSNLNAHKKKVTRHT 139
ER C E C L +H+R+HTG++P +C +C + F++ +L H + HT
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH---IRTHT 57
Query: 140 GRDEVPSIKPLKRKRNISFLTGAREGMPLIHECPTCGKKWRTRSELNKHTKTH 192
G KP C CG+K+ E +HTK H
Sbjct: 58 GE------KPF--------------------ACDICGRKFARSDERKRHTKIH 84
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 299 RPFVC--EICGQGYRTKTHLLVHVGMHNGIHPFTCHFCNKSFTQKTGLERHLTIHNNEK 355
RP+ C E C + + L H+ +H G PF C C ++F++ L H+ H EK
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 21/49 (42%)
Query: 59 CDLCGKGFIHLKSYQIHKMIHSGERHIKCEVCSLALLSKSHLKQHMRVH 107
C +C + F H H+GE+ C++C K+H ++H
Sbjct: 36 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 84
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 398 CGRCFNSPTTLTQHKIVHTGERRFKCDICGQALTTKPKLNDHMLLHTGEKPHECNVCGAR 457
C R F+ +LT+H +HTG++ F+C IC + + L H+ HTGEKP C++CG +
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 458 FAKKWNMQVHKQKVH 472
FA+ + H K+H
Sbjct: 72 FARSDERKRH-TKIH 85
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 166 MPLIHECP--TCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNGI 223
M + CP +C +++ L +H + H+ +PF C IC + + HL H+ H G
Sbjct: 1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 224 HPFTCHFCNKSFTQKTGLERHLTIHNNEK 252
PF C C + F + +RH IH +K
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 269 MPLIHECP--TCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNGI 326
M + CP +C +++ L +H + H+ +PF C IC + + HL H+ H G
Sbjct: 1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 327 HPFTCHFCNKSFTQKTGLERHLTIHNNEK 355
PF C C + F + +RH IH +K
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%)
Query: 62 CGKGFIHLKSYQIHKMIHSGERHIKCEVCSLALLSKSHLKQHMRVHTGERPHECEVCGKR 121
C + F S H IH+G++ +C +C HL H+R HTGE+P C++CG++
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 122 FAKRSNLNAHKK 133
FA+ H K
Sbjct: 72 FARSDERKRHTK 83
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 46/122 (37%), Gaps = 38/122 (31%)
Query: 328 PFTCHF--CNKSFTQKTGLERHLTIHNNEKKHQSGRRQKRNQQHDRQRSESDTTLAEEDN 385
P+ C C++ F+Q L RH+ IH +K
Sbjct: 4 PYACPVESCDRRFSQSGSLTRHIRIHTGQKP----------------------------- 34
Query: 386 LFHSTPIFQCHLCGRCFNSPTTLTQHKIVHTGERRFKCDICGQALTTKPKLNDHMLLHTG 445
FQC +C R F+ LT H HTGE+ F CDICG+ + H +H
Sbjct: 35 -------FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLR 87
Query: 446 EK 447
+K
Sbjct: 88 QK 89
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 21/101 (20%)
Query: 225 PFTCHF--CNKSFTQKTGLERHLTIHNNEKKHQVSGRFSFNRAREGMPLIHECPTCGKKW 282
P+ C C++ F+Q L RH+ IH +K Q C C + +
Sbjct: 4 PYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQ-------------------CRICMRNF 44
Query: 283 RTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMH 323
L H +TH+ +PF C+ICG+ + H +H
Sbjct: 45 SRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 31/113 (27%)
Query: 82 ERHIKC--EVCSLALLSKSHLKQHMRVHTGERPHECEVCGKRFAKRSNLNAHKKKVTRHT 139
ER C E C L +H+R+HTG++P +C +C + F++ +L H + HT
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH---IRTHT 58
Query: 140 GRDEVPSIKPLKRKRNISFLTGAREGMPLIHECPTCGKKWRTRSELNKHTKTH 192
G KP C CG+K+ E +HTK H
Sbjct: 59 GE------KPF--------------------ACDICGRKFARSDERKRHTKIH 85
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 26/60 (43%)
Query: 48 LLINEIAKYTRCDLCGKGFIHLKSYQIHKMIHSGERHIKCEVCSLALLSKSHLKQHMRVH 107
+ I+ K +C +C + F H H+GE+ C++C K+H ++H
Sbjct: 26 IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 170 HECP--TCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNGIHPFT 227
+ CP +C +++ EL +H + H+ +PF C IC + + HL H+ H G PF
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 228 CHFCNKSFTQKTGLERHLTIH 248
C C + F + +RH IH
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 273 HECP--TCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNGIHPFT 330
+ CP +C +++ EL +H + H+ +PF C IC + + HL H+ H G PF
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 331 CHFCNKSFTQKTGLERHLTIH 351
C C + F + +RH IH
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 398 CGRCFNSPTTLTQHKIVHTGERRFKCDICGQALTTKPKLNDHMLLHTGEKPHECNVCGAR 457
C R F+ LT+H +HTG++ F+C IC + + L H+ HTGEKP C++CG +
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 458 FAKKWNMQVHKQKVH 472
FA+ + H K+H
Sbjct: 72 FARSDERKRH-TKIH 85
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%)
Query: 62 CGKGFIHLKSYQIHKMIHSGERHIKCEVCSLALLSKSHLKQHMRVHTGERPHECEVCGKR 121
C + F H IH+G++ +C +C HL H+R HTGE+P C++CG++
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 122 FAKRSNLNAHKK 133
FA+ H K
Sbjct: 72 FARSDERKRHTK 83
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 21/102 (20%)
Query: 196 RPFVC--EICGQGYRTKTHLLVHVGMHNGIHPFTCHFCNKSFTQKTGLERHLTIHNNEKK 253
RP+ C E C + + L H+ +H G PF C C ++F++ L H+ H EK
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK- 61
Query: 254 HQVSGRFSFNRAREGMPLIHECPTCGKKWRTRSELNKHTKTH 295
P C CG+K+ E +HTK H
Sbjct: 62 ----------------PFA--CDICGRKFARSDERKRHTKIH 85
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 44/118 (37%), Gaps = 38/118 (32%)
Query: 328 PFTC--HFCNKSFTQKTGLERHLTIHNNEKKHQSGRRQKRNQQHDRQRSESDTTLAEEDN 385
P+ C C++ F++ L RH+ IH +K
Sbjct: 4 PYACPVESCDRRFSRSDELTRHIRIHTGQKP----------------------------- 34
Query: 386 LFHSTPIFQCHLCGRCFNSPTTLTQHKIVHTGERRFKCDICGQALTTKPKLNDHMLLH 443
FQC +C R F+ LT H HTGE+ F CDICG+ + H +H
Sbjct: 35 -------FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 31/113 (27%)
Query: 82 ERHIKC--EVCSLALLSKSHLKQHMRVHTGERPHECEVCGKRFAKRSNLNAHKKKVTRHT 139
ER C E C L +H+R+HTG++P +C +C + F++ +L H + HT
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH---IRTHT 58
Query: 140 GRDEVPSIKPLKRKRNISFLTGAREGMPLIHECPTCGKKWRTRSELNKHTKTH 192
G KP C CG+K+ E +HTK H
Sbjct: 59 GE------KPF--------------------ACDICGRKFARSDERKRHTKIH 85
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 299 RPFVC--EICGQGYRTKTHLLVHVGMHNGIHPFTCHFCNKSFTQKTGLERHLTIHNNEK 355
RP+ C E C + + L H+ +H G PF C C ++F++ L H+ H EK
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 26/60 (43%)
Query: 48 LLINEIAKYTRCDLCGKGFIHLKSYQIHKMIHSGERHIKCEVCSLALLSKSHLKQHMRVH 107
+ I+ K +C +C + F H H+GE+ C++C K+H ++H
Sbjct: 26 IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 38/62 (61%)
Query: 398 CGRCFNSPTTLTQHKIVHTGERRFKCDICGQALTTKPKLNDHMLLHTGEKPHECNVCGAR 457
C R F+ T L H +HTG++ F+C IC + + LN H+ HTGEKP C++CG +
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK 71
Query: 458 FA 459
FA
Sbjct: 72 FA 73
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 62 CGKGFIHLKSYQIHKMIHSGERHIKCEVCSLALLSKSHLKQHMRVHTGERPHECEVCGKR 121
C + F + H IH+G++ +C +C + L QH+R HTGE+P C++CG++
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK 71
Query: 122 FAKRSNLNAHKK 133
FA + H K
Sbjct: 72 FATLHTRDRHTK 83
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 166 MPLIHECP--TCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNGI 223
M + CP +C +++ ++ L+ H + H+ +PF C IC + + T L H+ H G
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE 60
Query: 224 HPFTCHFCNKSFTQKTGLERHLTIHNNEK 252
PF C C + F +RH IH +K
Sbjct: 61 KPFACDICGRKFATLHTRDRHTKIHLRQK 89
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 269 MPLIHECP--TCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNGI 326
M + CP +C +++ ++ L+ H + H+ +PF C IC + + T L H+ H G
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE 60
Query: 327 HPFTCHFCNKSFTQKTGLERHLTIHNNEK 355
PF C C + F +RH IH +K
Sbjct: 61 KPFACDICGRKFATLHTRDRHTKIHLRQK 89
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 50/122 (40%), Gaps = 38/122 (31%)
Query: 328 PFTCHF--CNKSFTQKTGLERHLTIHNNEKKHQSGRRQKRNQQHDRQRSESDTTLAEEDN 385
P+ C C++ F+QKT L+ H+ IH +K
Sbjct: 4 PYACPVESCDRRFSQKTNLDTHIRIHTGQKP----------------------------- 34
Query: 386 LFHSTPIFQCHLCGRCFNSPTTLTQHKIVHTGERRFKCDICGQALTTKPKLNDHMLLHTG 445
FQC +C R F+ T L QH HTGE+ F CDICG+ T + H +H
Sbjct: 35 -------FQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIHLR 87
Query: 446 EK 447
+K
Sbjct: 88 QK 89
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 21/90 (23%)
Query: 225 PFTCHF--CNKSFTQKTGLERHLTIHNNEKKHQVSGRFSFNRAREGMPLIHECPTCGKKW 282
P+ C C++ F+QKT L+ H+ IH +K Q C C + +
Sbjct: 4 PYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQ-------------------CRICMRNF 44
Query: 283 RTRSELNKHTKTHSDLRPFVCEICGQGYRT 312
+ LN+H +TH+ +PF C+ICG+ + T
Sbjct: 45 SQHTGLNQHIRTHTGEKPFACDICGRKFAT 74
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 31/113 (27%)
Query: 82 ERHIKCEV--CSLALLSKSHLKQHMRVHTGERPHECEVCGKRFAKRSNLNAHKKKVTRHT 139
ER C V C K++L H+R+HTG++P +C +C + F++ + LN H + HT
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQH---IRTHT 58
Query: 140 GRDEVPSIKPLKRKRNISFLTGAREGMPLIHECPTCGKKWRTRSELNKHTKTH 192
G KP C CG+K+ T ++HTK H
Sbjct: 59 GE------KPF--------------------ACDICGRKFATLHTRDRHTKIH 85
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 21/131 (16%)
Query: 225 PFTCHF--CNKSFTQKTGLERHLTIHNNEKKHQVSGRFSFNRAREGMPLIHECPTCGKKW 282
PF C + CNK + + + L+ H H EK +Q + C +++
Sbjct: 6 PFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFK-----------------DCERRF 48
Query: 283 RTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNGIHPFTCHF--CNKSFTQ 340
+L +H + H+ ++PF C+ C + + HL H H G PF+C + C K F +
Sbjct: 49 SRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFAR 108
Query: 341 KTGLERHLTIH 351
L RH +H
Sbjct: 109 SDELVRHHNMH 119
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 55/136 (40%), Gaps = 19/136 (13%)
Query: 162 AREGMPLIHECPTCGKKWRTRSELNKHTKTHSDLRPFVCEI--CGQGYRTKTHLLVHVGM 219
A E P + P C K++ S L H++ H+ +P+ C+ C + + L H
Sbjct: 1 ASEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR 60
Query: 220 HNGIHPFTCHFCNKSFTQKTGLERHLTIHNNEKKHQVSGRFSFNRAREGMPLIHECPTCG 279
H G+ PF C C + F++ L+ H H EK P P+C
Sbjct: 61 HTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEK-----------------PFSCRWPSCQ 103
Query: 280 KKWRTRSELNKHTKTH 295
KK+ EL +H H
Sbjct: 104 KKFARSDELVRHHNMH 119
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 60/145 (41%), Gaps = 31/145 (21%)
Query: 108 TGERPHECEV--CGKRFAKRSNLNAHKKKVTRHTGRDEVPSIKPLKRKRNISFLTGAREG 165
+ +RP C C KR+ K S+L H +K HTG
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRK---HTGEK----------------------- 35
Query: 166 MPLIHECPTCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNGIHP 225
P + C +++ +L +H + H+ ++PF C+ C + + HL H H G P
Sbjct: 36 -PYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKP 94
Query: 226 FTCHF--CNKSFTQKTGLERHLTIH 248
F+C + C K F + L RH +H
Sbjct: 95 FSCRWPSCQKKFARSDELVRHHNMH 119
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 265 AREGMPLIHECPTCGKKWRTRSELNKHTKTHSDLRPFVCEI--CGQGYRTKTHLLVHVGM 322
A E P + P C K++ S L H++ H+ +P+ C+ C + + L H
Sbjct: 1 ASEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR 60
Query: 323 HNGIHPFTCHFCNKSFTQKTGLERHLTIHNNEK 355
H G+ PF C C + F++ L+ H H EK
Sbjct: 61 HTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEK 93
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 62 CGKGFIHLKSYQIHKMIHSGERHIKCEV--CSLALLSKSHLKQHMRVHTGERPHECEVCG 119
C K + L Q+H H+GE+ +C+ C LK+H R HTG +P +C+ C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 120 KRFAKRSNLNAHKKKVTRHTG 140
++F++ +L H + HTG
Sbjct: 74 RKFSRSDHLKTHTRT---HTG 91
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 59 CDL--CGKGFIHLKSYQIHKMIHSGERHIKCEVCSLALLSKSHLKQHMRVHTGERPHECE 116
CD C + F + H+ H+G + +C+ C HLK H R HTGE+P C
Sbjct: 39 CDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCR 98
Query: 117 --VCGKRFAKRSNLNAH 131
C K+FA+ L H
Sbjct: 99 WPSCQKKFARSDELVRH 115
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 55/154 (35%), Gaps = 42/154 (27%)
Query: 296 SDLRPFVCEI--CGQGYRTKTHLLVHVGMHNGIHPFTCHF--CNKSFTQKTGLERHLTIH 351
S+ RPF+C C + Y +HL +H H G P+ C F C + F++ L+RH H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 352 NNEKKHQSGRRQKRNQQHDRQRSESDTTLAEEDNLFHSTPIFQCHLCGRCFNSPTTLTQH 411
K FQC C R F+ L H
Sbjct: 62 TGVK------------------------------------PFQCKTCQRKFSRSDHLKTH 85
Query: 412 KIVHTGERRFKC--DICGQALTTKPKLNDHMLLH 443
HTGE+ F C C + +L H +H
Sbjct: 86 TRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 393 FQCHL--CGRCFNSPTTLTQHKIVHTGERRFKCDICGQALTTKPKLNDHMLLHTGEKPHE 450
+QC C R F+ L +H+ HTG + F+C C + + L H HTGEKP
Sbjct: 37 YQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFS 96
Query: 451 CN--VCGARFAK 460
C C +FA+
Sbjct: 97 CRWPSCQKKFAR 108
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 398 CGRCFNSPTTLTQHKIVHTGERRFKCDI--CGQALTTKPKLNDHMLLHTGEKPHECNVCG 455
C + + + L H HTGE+ ++CD C + + +L H HTG KP +C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 456 ARFAKKWNMQVH 467
+F++ +++ H
Sbjct: 74 RKFSRSDHLKTH 85
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 436 LNDHMLLHTGEKPHECNV--CGARFAKKWNMQVHKQKVHG 473
L H HTGEKP++C+ C RF++ ++ H+++ G
Sbjct: 24 LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTG 63
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 171 ECPTCGKKWRTRSELNKHTKTHSDLRPFVCEI--CGQGYRTKTHLLVHVGMHNGIHPFTC 228
ECP GK ++ + +L H + H+ +PF C CG+ + +L +H H G PF C
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 229 HF--CNKSFTQKTGLERHLTIHNNEKKHQVSG 258
F C++ F + ++H+ +H ++K SG
Sbjct: 124 EFEGCDRRFANSSDRKKHMHVHTSDKSGPSSG 155
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 274 ECPTCGKKWRTRSELNKHTKTHSDLRPFVCEI--CGQGYRTKTHLLVHVGMHNGIHPFTC 331
ECP GK ++ + +L H + H+ +PF C CG+ + +L +H H G PF C
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 332 HF--CNKSFTQKTGLERHLTIHNNEKKHQS 359
F C++ F + ++H+ +H ++K S
Sbjct: 124 EFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 394 QCHLCGRCFNSPTTLTQHKIVHTGERRFKCDI--CGQALTTKPKLNDHMLLHTGEKPHEC 451
+C G+ F + L H VHTGE+ F C CG+ L H HTGEKP +C
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 452 NV--CGARFA----KKWNMQVHKQKVHGPD 475
C RFA +K +M VH GP
Sbjct: 124 EFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 51 NEIAKYTRCDLCGKGFIHLKSYQIHKMIHSGERHIKCEV--CSLALLSKSHLKQHMRVHT 108
N + + C GK F H +H+GE+ C C +LK H R HT
Sbjct: 57 NHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHT 116
Query: 109 GERPHECEV--CGKRFAKRSNLNAH 131
GE+P +CE C +RFA S+ H
Sbjct: 117 GEKPFKCEFEGCDRRFANSSDRKKH 141
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 62 CGKGFIHLKSYQIHKMIHSGERHIKCEV--CSLALLSKSHLKQHMRVHTGER 111
CGK F ++ +IHK H+GE+ KCE C + S K+HM VHT ++
Sbjct: 98 CGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 66/193 (34%), Gaps = 63/193 (32%)
Query: 268 GMPLIHECPTCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGM-HNGI 326
G P+ E +C KW ++L++ K+ C + + T L+ HV M H G
Sbjct: 7 GQPIKQEL-SC--KWIDEAQLSRPKKS-----------CDRTFSTMHELVTHVTMEHVGG 52
Query: 327 HPFTCHFC--------NKSFTQKTGLERHLTIHNNEKKHQSGRRQKRNQQHDRQRSESDT 378
H C KSF K L H+ +H EK
Sbjct: 53 PEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP---------------------- 90
Query: 379 TLAEEDNLFHSTPIFQCHL--CGRCFNSPTTLTQHKIVHTGERRFKCDI--CGQALTTKP 434
F C CG+ F L HK HTGE+ FKC+ C +
Sbjct: 91 --------------FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSS 136
Query: 435 KLNDHMLLHTGEK 447
HM +HT +K
Sbjct: 137 DRKKHMHVHTSDK 149
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 58 RCDLCGKGFIHLKSYQIHKMIHSGERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
+CD CGK F H H+ H+GE+ KC+ C A + +SHL H RVHTG P
Sbjct: 20 KCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
++C CG+ F+ + L++H+ HTGE+ +KCD CG+A + L H +HTG P
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 83 RHIKCEVCSLALLSKSHLKQHMRVHTGERPHECEVCGKRFAKRSNLNAH 131
R KC+ C + S L +H R HTGE+P++C+ CGK F +RS+L H
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 419 RRFKCDICGQALTTKPKLNDHMLLHTGEKPHECNVCGARFAKKWNMQVH 467
RR+KCD CG++ + L+ H HTGEKP++C+ CG F ++ ++ H
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 37/58 (63%)
Query: 170 HECPTCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNGIHPFT 227
++C CGK + S+L+KH +TH+ +P+ C+ CG+ + ++HL+ H +H G P +
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 37/58 (63%)
Query: 273 HECPTCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNGIHPFT 330
++C CGK + S+L+KH +TH+ +P+ C+ CG+ + ++HL+ H +H G P +
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 194 DLRPFVCEICGQGYRTKTHLLVHVGMHNGIHPFTCHFCNKSFTQKTGLERHLTIHNN 250
+ R + C+ CG+ + + L H H G P+ C C K+F Q++ L H +H
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 297 DLRPFVCEICGQGYRTKTHLLVHVGMHNGIHPFTCHFCNKSFTQKTGLERHLTIHNN 353
+ R + C+ CG+ + + L H H G P+ C C K+F Q++ L H +H
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 19/75 (25%)
Query: 226 FTCHFCNKSFTQKTGLERHLTIHNNEKKHQVSGRFSFNRAREGMPLIHECPTCGKKWRTR 285
+ C C KSF+ + L +H H EK ++ C CGK + R
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYK-------------------CDECGKAFIQR 59
Query: 286 SELNKHTKTHSDLRP 300
S L H + H+ P
Sbjct: 60 SHLIGHHRVHTGSGP 74
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKPHECNVCGARFAKKWNMQVH 467
++ +KCD C + K L H +HTGEKP+ CN+CGA+F + N++ H
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
++C C F L HK VHTGE+ ++C+ICG L H +H+GEKP
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%)
Query: 58 RCDLCGKGFIHLKSYQIHKMIHSGERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
+CD C F + + HK +H+GE+ +C +C ++LK H R+H+GE+P
Sbjct: 19 KCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERPHECEVCGKRFAKRSNLNAHKK 133
++ KC+ C + K +L H VHTGE+P+ C +CG +F + +NL H +
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR 66
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 196 RPFVCEICGQGYRTKTHLLVHVGMHNGIHPFTCHFCNKSFTQKTGLERHLTIHNNEK 252
+P+ C+ C +R K +L H +H G P+ C+ C F + L+ H IH+ EK
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 299 RPFVCEICGQGYRTKTHLLVHVGMHNGIHPFTCHFCNKSFTQKTGLERHLTIHNNEK 355
+P+ C+ C +R K +L H +H G P+ C+ C F + L+ H IH+ EK
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 170 HECPTCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNGIHP 225
++C C +R + L H H+ +P+ C ICG + +L H +H+G P
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 273 HECPTCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNGIHP 328
++C C +R + L H H+ +P+ C ICG + +L H +H+G P
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 32/92 (34%), Gaps = 36/92 (39%)
Query: 328 PFTCHFCNKSFTQKTGLERHLTIHNNEKKHQSGRRQKRNQQHDRQRSESDTTLAEEDNLF 387
P+ C C SF K L H T+H EK
Sbjct: 17 PYKCDRCQASFRYKGNLASHKTVHTGEKP------------------------------- 45
Query: 388 HSTPIFQCHLCGRCFNSPTTLTQHKIVHTGER 419
++C++CG FN P L H +H+GE+
Sbjct: 46 -----YRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 35.0 bits (79), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 19/76 (25%)
Query: 225 PFTCHFCNKSFTQKTGLERHLTIHNNEKKHQVSGRFSFNRAREGMPLIHECPTCGKKWRT 284
P+ C C SF K L H T+H EK ++ C CG ++
Sbjct: 17 PYKCDRCQASFRYKGNLASHKTVHTGEKPYR-------------------CNICGAQFNR 57
Query: 285 RSELNKHTKTHSDLRP 300
+ L HT+ HS +P
Sbjct: 58 PANLKTHTRIHSGEKP 73
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 29/88 (32%)
Query: 110 ERPHECEVCGKRFAKRSNLNAHKKKVTRHTGRDEVPSIKPLKRKRNISFLTGAREGMPLI 169
++P++C+ C F + NL +HK T HTG KP +
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHK---TVHTGE------KPYR------------------ 47
Query: 170 HECPTCGKKWRTRSELNKHTKTHSDLRP 197
C CG ++ + L HT+ HS +P
Sbjct: 48 --CNICGAQFNRPANLKTHTRIHSGEKP 73
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGERRFKCDICGQALTTKPKLNDHMLLHTGEKPHECN 452
+ C +C R + T+L +H +H+ E+++ C C + H + HTGE+ ++C
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL 82
Query: 453 VCGARFAKKWNMQVHKQKVHGPDVRGTTE 481
CG F M H + VH D G ++
Sbjct: 83 ACGKSFINYQFMSSHIKSVHSQDPSGDSK 111
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%)
Query: 49 LINEIAKYTRCDLCGKGFIHLKSYQIHKMIHSGERHIKCEVCSLALLSKSHLKQHMRVHT 108
LI + Y C +C + ++ L S + H IHS E+ C C + +H HT
Sbjct: 15 LIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHT 74
Query: 109 GERPHECEVCGKRFAKRSNLNAHKKKV 135
GER ++C CGK F +++H K V
Sbjct: 75 GERRYQCLACGKSFINYQFMSSHIKSV 101
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 36/112 (32%)
Query: 329 FTCHFCNKSFTQKTGLERHLTIHNNEKKHQSGRRQKRNQQHDRQRSESDTTLAEEDNLFH 388
+ C C +S+ T L RH IH+ EKK
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKK-------------------------------- 50
Query: 389 STPIFQCHLCGRCFNSPTTLTQHKIVHTGERRFKCDICGQALTTKPKLNDHM 440
+ C C + F T+H+I HTGERR++C CG++ ++ H+
Sbjct: 51 ----YPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHI 98
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 19/97 (19%)
Query: 198 FVCEICGQGYRTKTHLLVHVGMHNGIHPFTCHFCNKSFTQKTGLERHLTIHNNEKKHQVS 257
++C +C + Y T L H +H+ + C +C K F +H H E+++Q
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ-- 80
Query: 258 GRFSFNRAREGMPLIHECPTCGKKWRTRSELNKHTKT 294
C CGK + ++ H K+
Sbjct: 81 -----------------CLACGKSFINYQFMSSHIKS 100
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 301 FVCEICGQGYRTKTHLLVHVGMHNGIHPFTCHFCNKSFTQKTGLERHLTIHNNEKKHQ 358
++C +C + Y T L H +H+ + C +C K F +H H E+++Q
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 35/95 (36%), Gaps = 19/95 (20%)
Query: 226 FTCHFCNKSFTQKTGLERHLTIHNNEKKHQVSGRFSFNRAREGMPLIHECPTCGKKWRTR 285
+ C C +S+ T L RH IH+ EKK+ C C K +
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKY-------------------PCRYCEKVFPLA 63
Query: 286 SELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHV 320
KH H+ R + C CG+ + + H+
Sbjct: 64 EYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHI 98
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 75 HKMIHSGERHIKCEVCSLALLSKSHLKQHMRVHTGERPHECEVCGKRFAKRSNLNAHKKK 134
+++I G + C VC + + + L++H +H+ E+ + C C K F H+
Sbjct: 13 YELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHE-- 70
Query: 135 VTRHTGRDEVPSIKPLKRKRNISFLTG 161
HTG + K N F++
Sbjct: 71 -IHHTGERRYQCLACGKSFINYQFMSS 96
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Query: 172 CPTCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNGIHPFTCHFC 231
C C + + + L +H HS + + C C + + + H H G + C C
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLAC 84
Query: 232 NKSFTQKTGLERHL-TIHNNE 251
KSF + H+ ++H+ +
Sbjct: 85 GKSFINYQFMSSHIKSVHSQD 105
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Query: 275 CPTCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNGIHPFTCHFC 334
C C + + + L +H HS + + C C + + + H H G + C C
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLAC 84
Query: 335 NKSFTQKTGLERHL-TIHNNE 354
KSF + H+ ++H+ +
Sbjct: 85 GKSFINYQFMSSHIKSVHSQD 105
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 169 IHEC--PTCGKKWRTRSELNKHTKTHSDLRPFVC--EICGQGYRTKTHLLVHVGMHNGIH 224
IH C P C K + S L H +TH+ +P+ C E C + L H H G
Sbjct: 15 IHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAK 74
Query: 225 PFTCHFCNKSFTQKTGLERHLTIHNN 250
PF C CN+SF++ L H+ H N
Sbjct: 75 PFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 272 IHEC--PTCGKKWRTRSELNKHTKTHSDLRPFVC--EICGQGYRTKTHLLVHVGMHNGIH 327
IH C P C K + S L H +TH+ +P+ C E C + L H H G
Sbjct: 15 IHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAK 74
Query: 328 PFTCHFCNKSFTQKTGLERHLTIHNN 353
PF C CN+SF++ L H+ H N
Sbjct: 75 PFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 59 CDLCGKGFIHLKSYQI--HKMIHSGERHIKC--EVCSLALLSKSHLKQHMRVHTGERPHE 114
CD G ++ KS + H H+GE+ KC E C L +H R HTG +P +
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 115 CEVCGKRFAKRSNLNAHKKK 134
C VC + F++ +L H K+
Sbjct: 78 CGVCNRSFSRSDHLALHMKR 97
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 398 CGRCFNSPTTLTQHKIVHTGERRFKC--DICGQALTTKPKLNDHMLLHTGEKPHECNVCG 455
C + + + L H HTGE+ +KC + C +L H HTG KP +C VC
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 456 ARFAKKWNMQVHKQK 470
F++ ++ +H ++
Sbjct: 83 RSFSRSDHLALHMKR 97
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 17/93 (18%)
Query: 231 CNKSFTQKTGLERHLTIHNNEKKHQVSGRFSFNRAREGMPLIHECPTCGKKWRTRSELNK 290
C K +T+ + L+ HL H EK ++ + EG C ++ EL +
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTW--------EG---------CDWRFARSDELTR 65
Query: 291 HTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMH 323
H + H+ +PF C +C + + HL +H+ H
Sbjct: 66 HYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 47/114 (41%), Gaps = 33/114 (28%)
Query: 111 RPHECEV--CGKRFAKRSNLNAHKKKVTRHTGRDEVPSIKPLKRKRNISFLTGAREGMPL 168
R H C+ C K + K S+L AH + HTG KP K
Sbjct: 14 RIHYCDYPGCTKVYTKSSHLKAH---LRTHTGE------KPYK----------------- 47
Query: 169 IHECPTCGKKWR-TRS-ELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMH 220
C G WR RS EL +H + H+ +PF C +C + + HL +H+ H
Sbjct: 48 ---CTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 87 CEVCSLALLSKSHLKQHMRVHTGERPHECEVCGKRFAKRSNLNAHKKKVTRHTG 140
CEVC+ A + HLK+H R HT E+P+ C +C + F +R L H +K+ H+G
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKI--HSG 56
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 421 FKCDICGQALTTKPKLNDHMLLHTGEKPHECNVCGARFAKKWNMQVHKQKVHGPDV 476
F C++C +A + L H HT EKP+ C +C F ++ + H QK+H ++
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 198 FVCEICGQGYRTKTHLLVHVGMHNGIHPFTCHFCNKSFTQKTGLERH 244
FVCE+C + + + HL H H P+ C CN++FT++ L RH
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 301 FVCEICGQGYRTKTHLLVHVGMHNGIHPFTCHFCNKSFTQKTGLERH 347
FVCE+C + + + HL H H P+ C CN++FT++ L RH
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGERRFKCDICGQALTTKPKLNDHML-LHTG 445
F C +C R F L +H HT E+ + C +C +A T + L H +H+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 172 CPTCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHV-GMHNG 222
C C + + + L +H ++H++ +P+ C +C + + + L+ H +H+G
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 275 CPTCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHV-GMHNG 325
C C + + + L +H ++H++ +P+ C +C + + + L+ H +H+G
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 329 FTCHFCNKSFTQKTGLERHLTIHNNEKKHQSG 360
F C C ++F ++ L+RH H NEK + G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCG 34
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 226 FTCHFCNKSFTQKTGLERHLTIHNNEKKH 254
F C C ++F ++ L+RH H NEK +
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPY 31
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 68/164 (41%), Gaps = 27/164 (16%)
Query: 198 FVCEI--CGQGYRTKTHLLVHVGMHNGIHPFTC--HFCNKSFTQKTGLERHLTIHNNEKK 253
++C CG Y L H+ H G PF C C K FT L RH H EK
Sbjct: 13 YICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK- 71
Query: 254 HQVSGRFSFNRAREGMPLIHECPTCGKKWRTRSELNKHTKTHSDLR--PFVC--EICGQG 309
+F +G C ++ T++ + KH +++ +VC E CG+
Sbjct: 72 -------NFTCDSDG---------CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKA 115
Query: 310 YRTKTHLLVHVGMHNGIHPFTC--HFCNKSFTQKTGLERHLTIH 351
++ L VH H P+ C C+K F+ + L+RH +H
Sbjct: 116 FKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 159
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 398 CGRCFNSPTTLTQHKIVHTGERRFKC--DICGQALTTKPKLNDHMLLHTGEKPHECNV-- 453
CG +N L H HTGE+ F C + C + T+ L H L HTGEK C+
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 454 CGARFAKKWNMQVHKQKVH 472
C RF K NM+ H + H
Sbjct: 80 CDLRFTTKANMKKHFNRFH 98
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 65/166 (39%), Gaps = 19/166 (11%)
Query: 175 CGKKWRTRSELNKHTKTHSDLRPFVC--EICGQGYRTKTHLLVHVGMHNGIHPFTCHF-- 230
CG + +L H H+ +PF C E C +G+ + HL H H G FTC
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 231 CNKSFTQKTGLERHLT-------------IHNNEKKHQVSGRFSFNRAREGMPLIHECP- 276
C+ FT K +++H N K + + ++ L +ECP
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPH 139
Query: 277 -TCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVG 321
C K++ S L +H K H+ + C +T T L HV
Sbjct: 140 EGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVA 185
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 69/184 (37%), Gaps = 34/184 (18%)
Query: 62 CGKGFIHLKSYQIHKMIHSGERHIKC--EVCSLALLSKSHLKQHMRVHTGERPHECEV-- 117
CG + Q H H+GE+ C E C S HL +H HTGE+ C+
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 118 CGKRFAKRSNLNAHKKKVTRHTGRDEVPSIKPLKRKRNISFLTGAREGMPLIHECPTCGK 177
C RF ++N+ H R NI + CGK
Sbjct: 80 CDLRFTTKANMKKH------------------FNRFHNIKICV-------YVCHFENCGK 114
Query: 178 KWRTRSELNKHTKTHSDLRPFVC--EICGQGYRTKTHLLVHVGMHNGI---HPFTCHFCN 232
++ ++L H +H+ P+ C E C + + + L H +H G +C F
Sbjct: 115 AFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVG 174
Query: 233 KSFT 236
K++T
Sbjct: 175 KTWT 178
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 63/181 (34%), Gaps = 41/181 (22%)
Query: 301 FVCEI--CGQGYRTKTHLLVHVGMHNGIHPFTC--HFCNKSFTQKTGLERHLTIHNNEKK 356
++C CG Y L H+ H G PF C C K FT L RH H EK
Sbjct: 13 YICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN 72
Query: 357 HQSGRRQKRNQQHDRQRSESDTTLAEEDNLFHSTPI--FQCHLCGRCFNSPTTLTQHKIV 414
+ R + + + N FH+ I + CH
Sbjct: 73 FTC------DSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHF----------------- 109
Query: 415 HTGERRFKCDICGQALTTKPKLNDHMLLHTGEKPHEC--NVCGARFAKKWNMQVHKQKVH 472
+ CG+A +L H HT + P+EC C RF+ ++ H +KVH
Sbjct: 110 ---------ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH-EKVH 159
Query: 473 G 473
Sbjct: 160 A 160
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 419 RRFKCDI--CGQALTTKPKLNDHMLLHTGEKPHEC 451
+R+ C CG A KL H+ HTGEKP C
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPC 45
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 30/159 (18%)
Query: 175 CGKKWRTRSELNKHTKT---HSDLRPFVCEICG-----QGYRTKTHLLVHVGMHNGIHPF 226
C +++ ++ +L H + H + + FVC G + ++ + L+VH+ H G P
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPH 68
Query: 227 TCHF--CNKSFTQKTGLERHLTIHNNEKKHQVSGRFSFNRAREGMPLIHECPTCGKKWRT 284
C F C KS+++ L+ HL H EK P + E C K +
Sbjct: 69 KCTFEGCRKSYSRLENLKTHLRSHTGEK-----------------PYMCEHEGCSKAFSN 111
Query: 285 RSELNKH-TKTHSDLRPFVCEI--CGQGYRTKTHLLVHV 320
S+ KH +THS+ +P+VC++ C + Y + L HV
Sbjct: 112 ASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHV 150
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 53/122 (43%), Gaps = 30/122 (24%)
Query: 74 IHKMIHSGERHIKC--EVCSLALLSKSHLKQHMRVHTGERPHEC--EVCGKRFAKRSNLN 129
+H H+GE+ KC E C + +LK H+R HTGE+P+ C E C K F+ S+
Sbjct: 57 VHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRA 116
Query: 130 AHKKKVTRHTGRDEVPSIKPLKRKRNISFLTGAREGMPLIHECPTCGKKWRTRSELNKHT 189
H+ + T +E P + L P C K++ S L KH
Sbjct: 117 KHQNR----THSNEKPYVCKL----------------------PGCTKRYTDPSSLRKHV 150
Query: 190 KT 191
KT
Sbjct: 151 KT 152
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 62 CGKGFIHLKSYQIHKMIHSGERHIKC--EVCSLALLSKSHLKQHM-RVHTGERPHECEV- 117
C K + L++ + H H+GE+ C E CS A + S +H R H+ E+P+ C++
Sbjct: 75 CRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLP 134
Query: 118 -CGKRFAKRSNLNAHKKKV 135
C KR+ S+L H K V
Sbjct: 135 GCTKRYTDPSSLRKHVKTV 153
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 393 FQCHLCG-----RCFNSPTTLTQHKIVHTGERRFKCDI--CGQALTTKPKLNDHMLLHTG 445
F CH G R F + L H HTGE+ KC C ++ + L H+ HTG
Sbjct: 35 FVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTG 94
Query: 446 EKPHEC--NVCGARFAKKWNMQVHKQKVHG 473
EKP+ C C F+ + H+ + H
Sbjct: 95 EKPYMCEHEGCSKAFSNASDRAKHQNRTHS 124
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 24/154 (15%)
Query: 278 CGKKWRTRSELNKHTKT---HSDLRPFVCEICG-----QGYRTKTHLLVHVGMHNGIHPF 329
C +++ ++ +L H + H + + FVC G + ++ + L+VH+ H G P
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPH 68
Query: 330 TCHF--CNKSFTQKTGLERHLTIHNNEKKH---QSGRRQKRNQQHDRQRSESDTTLAEED 384
C F C KS+++ L+ HL H EK + G + + DR + ++ T E+
Sbjct: 69 KCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKP 128
Query: 385 NLFHSTPIFQCHL--CGRCFNSPTTLTQH-KIVH 415
+ C L C + + P++L +H K VH
Sbjct: 129 --------YVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 398 CGRCFNSPTTLTQH---KIVHTGERRFKCDICGQALTTKPKLNDHMLL-----HTGEKPH 449
C + F+S L H + +H + F C G + +P +ML+ HTGEKPH
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPH 68
Query: 450 ECNVCGAR--FAKKWNMQVH 467
+C G R +++ N++ H
Sbjct: 69 KCTFEGCRKSYSRLENLKTH 88
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 196 RPFVCEICGQGYRTKTHLLVHVGMHNGIHPFTCHFCNKSFTQKTGLERHLTIHNNE 251
RPF C CG+ YR + L H H G P +C C K F ++ + RHL +H N+
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK 58
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 299 RPFVCEICGQGYRTKTHLLVHVGMHNGIHPFTCHFCNKSFTQKTGLERHLTIHNNE 354
RPF C CG+ YR + L H H G P +C C K F ++ + RHL +H N+
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK 58
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 19/73 (26%)
Query: 225 PFTCHFCNKSFTQKTGLERHLTIHNNEKKHQVSGRFSFNRAREGMPLIHECPTCGKKWRT 284
PF C+FC K++ +GL RH H + CP CGK +R
Sbjct: 4 PFFCNFCGKTYRDASGLSRHRRAHLGYRPR-------------------SCPECGKCFRD 44
Query: 285 RSELNKHTKTHSD 297
+SE+N+H K H +
Sbjct: 45 QSEVNRHLKVHQN 57
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 24/52 (46%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERPHECEVCGKRFAKRSNLNAHKK 133
ER C C S L +H R H G RP C CGK F +S +N H K
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLK 53
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 172 CPTCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMH 220
C CGK +R S L++H + H RP C CG+ +R ++ + H+ +H
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 275 CPTCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMH 323
C CGK +R S L++H + H RP C CG+ +R ++ + H+ +H
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGERRFKCDICGQALTTKPKLNDHMLLH 443
F C+ CG+ + + L++H+ H G R C CG+ + ++N H+ +H
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 29/85 (34%)
Query: 110 ERPHECEVCGKRFAKRSNLNAHKKKVTRHTGRDEVPSIKPLKRKRNISFLTGAREGMPLI 169
ERP C CGK + S L+ H++ H G +P
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRA---HLG------YRP-------------------- 32
Query: 170 HECPTCGKKWRTRSELNKHTKTHSD 194
CP CGK +R +SE+N+H K H +
Sbjct: 33 RSCPECGKCFRDQSEVNRHLKVHQN 57
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKPHECNVCGARFAKKWNMQVHKQKVH 472
ER F C+ CG+ L+ H H G +P C CG F + + H KVH
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRH-LKVH 55
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 59 CDLCGKGFIHLKSYQIHKMIHSGERHIKCEVCSLALLSKSHLKQHMRVH 107
C+ CGK + H+ H G R C C +S + +H++VH
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGERRFKCDICGQALTTKPKLNDHMLLHT 444
+ C CG+ F+ + L QH+ VHTGE+ +KC CG+A + L +H +HT
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERPHECEVCGKRFAKRSNLNAHKK 133
E+ C C A S L QH RVHTGE+P++C CGK F++ S L H++
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 196 RPFVCEICGQGYRTKTHLLVHVGMHNGIHPFTCHFCNKSFTQKTGLERHLTIHNN 250
+P+ C CG+ + + L+ H +H G P+ C C K+F+Q +GL H IH +
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 299 RPFVCEICGQGYRTKTHLLVHVGMHNGIHPFTCHFCNKSFTQKTGLERHLTIHNN 353
+P+ C CG+ + + L+ H +H G P+ C C K+F+Q +GL H IH +
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKPHECNVCGARFAKKWNMQVHKQKVH--GPD 475
E+ + C CG+A + L H +HTGEKP++C CG F++ + ++ Q++H GP
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGL-INHQRIHTSGPS 70
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%)
Query: 59 CDLCGKGFIHLKSYQIHKMIHSGERHIKCEVCSLALLSKSHLKQHMRVHT 108
C CGK F H+ +H+GE+ KC C A S L H R+HT
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 170 HECPTCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMH 220
+ C CGK + S L +H + H+ +P+ C CG+ + + L+ H +H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 273 HECPTCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMH 323
+ C CGK + S L +H + H+ +P+ C CG+ + + L+ H +H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 19/74 (25%)
Query: 224 HPFTCHFCNKSFTQKTGLERHLTIHNNEKKHQVSGRFSFNRAREGMPLIHECPTCGKKWR 283
P+ C C K+F++ + L +H +H EK ++ C CGK +
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYK-------------------CLECGKAFS 53
Query: 284 TRSELNKHTKTHSD 297
S L H + H+
Sbjct: 54 QNSGLINHQRIHTS 67
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 398 CGRCFNSPTTLTQHKIVHTGERRFKC--DICGQALTTKPKLNDHMLLHTGEKPHECNV-- 453
CG +N L H HTGE+ F C + C + T+ L H L HTGEK C+
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 454 CGARFAKKWNMQVHKQKVH 472
C RF K NM+ H + H
Sbjct: 71 CDLRFTTKANMKKHFNRFH 89
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 278 CGKKWRTRSELNKHTKTHSDLRPFVC--EICGQGYRTKTHLLVHVGMHNGIHPFTCHF-- 333
CG + +L H H+ +PF C E C +G+ + HL H H G FTC
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 334 CNKSFTQKTGLERHLTIHNNEK 355
C+ FT K +++H +N K
Sbjct: 71 CDLRFTTKANMKKHFNRFHNIK 92
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 62 CGKGFIHLKSYQIHKMIHSGERHIKC--EVCSLALLSKSHLKQHMRVHTGERPHECEV-- 117
CG + Q H H+GE+ C E C S HL +H HTGE+ C+
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 118 CGKRFAKRSNLNAH 131
C RF ++N+ H
Sbjct: 71 CDLRFTTKANMKKH 84
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 198 FVCEI--CGQGYRTKTHLLVHVGMHNGIHPFTC--HFCNKSFTQKTGLERHLTIHNNEK 252
++C CG Y L H+ H G PF C C K FT L RH H EK
Sbjct: 4 YICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 62
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 301 FVCEI--CGQGYRTKTHLLVHVGMHNGIHPFTC--HFCNKSFTQKTGLERHLTIHNNEK 355
++C CG Y L H+ H G PF C C K FT L RH H EK
Sbjct: 4 YICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 62
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 419 RRFKCDI--CGQALTTKPKLNDHMLLHTGEKPHEC 451
+R+ C CG A KL H+ HTGEKP C
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPC 36
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 59 CDL--CGKGFIHLKSYQIHKMIHSGERHIKCEV--CSLALLSKSHLKQHMRVHTGERPHE 114
CD CGK + + H H+GE+ C+ C L +H R HTG RP +
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 115 CEVCGKRFAKRSNLNAHKKK 134
C+ C + F++ +L H K+
Sbjct: 69 CQKCDRAFSRSDHLALHMKR 88
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 29/118 (24%)
Query: 206 GYRTKTHLLVHVGMHNGIHPFTCHFCNKSFTQKTGLERHLTIHNNEKKHQVSGRFSFNRA 265
G RT TH + G C K++T+ + L+ HL H EK
Sbjct: 1 GSRTATHTCDYAG------------CGKTYTKSSHLKAHLRTHTGEK------------- 35
Query: 266 REGMPLIHECPTCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMH 323
P + CG K+ EL +H + H+ RPF C+ C + + HL +H+ H
Sbjct: 36 ----PYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 398 CGRCFNSPTTLTQHKIVHTGERRFKCDI--CGQALTTKPKLNDHMLLHTGEKPHECNVCG 455
CG+ + + L H HTGE+ + CD CG +L H HTG +P +C C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 456 ARFAKKWNMQVHKQK 470
F++ ++ +H ++
Sbjct: 74 RAFSRSDHLALHMKR 88
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 175 CGKKWRTRSELNKHTKTHSDLRPFVCEI--CGQGYRTKTHLLVHVGMHNGIHPFTCHFCN 232
CGK + S L H +TH+ +P+ C+ CG + L H H G PF C C+
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 233 KSFTQKTGLERHLTIH 248
++F++ L H+ H
Sbjct: 74 RAFSRSDHLALHMKRH 89
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 278 CGKKWRTRSELNKHTKTHSDLRPFVCEI--CGQGYRTKTHLLVHVGMHNGIHPFTCHFCN 335
CGK + S L H +TH+ +P+ C+ CG + L H H G PF C C+
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 336 KSFTQKTGLERHLTIH 351
++F++ L H+ H
Sbjct: 74 RAFSRSDHLALHMKRH 89
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 90 CSLALLSKSHLKQHMRVHTGERPHECEV--CGKRFAKRSNLNAHKKKVTRH 138
C SHLK H+R HTGE+P+ C+ CG +FA+ L H +K T H
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 64
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 46/135 (34%), Gaps = 46/135 (34%)
Query: 309 GYRTKTHLLVHVGMHNGIHPFTCHFCNKSFTQKTGLERHLTIHNNEKKHQSGRRQKRNQQ 368
G RT TH + G C K++T+ + L+ HL H EK +
Sbjct: 1 GSRTATHTCDYAG------------CGKTYTKSSHLKAHLRTHTGEKPYH---------- 38
Query: 369 HDRQRSESDTTLAEEDNLFHSTPIFQCHLCGRCFNSPTTLTQHKIVHTGERRFKCDICGQ 428
+ D CG F LT+H HTG R F+C C +
Sbjct: 39 ------------CDWDG------------CGWKFARSDELTRHYRKHTGHRPFQCQKCDR 74
Query: 429 ALTTKPKLNDHMLLH 443
A + L HM H
Sbjct: 75 AFSRSDHLALHMKRH 89
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 20/48 (41%)
Query: 60 DLCGKGFIHLKSYQIHKMIHSGERHIKCEVCSLALLSKSHLKQHMRVH 107
D CG F H H+G R +C+ C A HL HM+ H
Sbjct: 42 DGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 59 CDL--CGKGFIHLKSYQIHKMIHSGERHIKCEV--CSLALLSKSHLKQHMRVHTGERPHE 114
CD CGK + + H H+GE+ C+ C L +H R HTG RP +
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 115 CEVCGKRFAKRSNLNAHKKK 134
C+ C + F++ +L H K+
Sbjct: 68 CQKCDRAFSRSDHLALHMKR 87
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 398 CGRCFNSPTTLTQHKIVHTGERRFKCDI--CGQALTTKPKLNDHMLLHTGEKPHECNVCG 455
CG+ + + L H HTGE+ + CD CG +L H HTG +P +C C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 456 ARFAKKWNMQVHKQK 470
F++ ++ +H ++
Sbjct: 73 RAFSRSDHLALHMKR 87
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 175 CGKKWRTRSELNKHTKTHSDLRPFVCEI--CGQGYRTKTHLLVHVGMHNGIHPFTCHFCN 232
CGK + S L H +TH+ +P+ C+ CG + L H H G PF C C+
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 233 KSFTQKTGLERHLTIH 248
++F++ L H+ H
Sbjct: 73 RAFSRSDHLALHMKRH 88
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 278 CGKKWRTRSELNKHTKTHSDLRPFVCEI--CGQGYRTKTHLLVHVGMHNGIHPFTCHFCN 335
CGK + S L H +TH+ +P+ C+ CG + L H H G PF C C+
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 336 KSFTQKTGLERHLTIH 351
++F++ L H+ H
Sbjct: 73 RAFSRSDHLALHMKRH 88
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 90 CSLALLSKSHLKQHMRVHTGERPHECEV--CGKRFAKRSNLNAHKKKVTRH 138
C SHLK H+R HTGE+P+ C+ CG +FA+ L H +K T H
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 63
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 29/116 (25%)
Query: 208 RTKTHLLVHVGMHNGIHPFTCHFCNKSFTQKTGLERHLTIHNNEKKHQVSGRFSFNRARE 267
RT TH + G C K++T+ + L+ HL H EK
Sbjct: 2 RTATHTCDYAG------------CGKTYTKSSHLKAHLRTHTGEK--------------- 34
Query: 268 GMPLIHECPTCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMH 323
P + CG K+ EL +H + H+ RPF C+ C + + HL +H+ H
Sbjct: 35 --PYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 20/48 (41%)
Query: 60 DLCGKGFIHLKSYQIHKMIHSGERHIKCEVCSLALLSKSHLKQHMRVH 107
D CG F H H+G R +C+ C A HL HM+ H
Sbjct: 41 DGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 85 IKCEVCSLALLSKSHLKQHMRVHTGERPHECEVCGKRFAKRSNLNAHK 132
+C +C HL H+R HTGE+P C++CG++FA+ H+
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHR 51
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 195 LRPFVCEICGQGYRTKTHLLVHVGMHNGIHPFTCHFCNKSFTQKTGLERHLTI 247
++PF C IC + + HL H+ H G PF C C + F + +RH I
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 298 LRPFVCEICGQGYRTKTHLLVHVGMHNGIHPFTCHFCNKSFTQKTGLERHLTI 350
++PF C IC + + HL H+ H G PF C C + F + +RH I
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 421 FKCDICGQALTTKPKLNDHMLLHTGEKPHECNVCGARFAKKWNMQVHKQKVH 472
F+C IC + + L H+ HTGEKP C++CG +FA+ + H+ H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 23/39 (58%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGERRFKCDICGQALT 431
FQC +C R F+ LT H HTGE+ F CDICG+
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 42
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 171 ECPTCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGY 207
+C C + + L H +TH+ +PF C+ICG+ +
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 41
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 274 ECPTCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGY 310
+C C + + L H +TH+ +PF C+ICG+ +
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 41
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 200 CEICGQGYRTKTHLLVHVGMHNGIHPFTCHFCNKSFTQKTGLERHLTIH 248
C CG+ +R+ +L +H+ H G P+ C FC + QKT L HL H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 303 CEICGQGYRTKTHLLVHVGMHNGIHPFTCHFCNKSFTQKTGLERHLTIH 351
C CG+ +R+ +L +H+ H G P+ C FC + QKT L HL H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 422 KCDICGQALTTKPKLNDHMLLHTGEKPHECNVCGARFAKKWNMQVHKQKVH 472
+C CG+ + LN H+ HTGEKP++C C A+K +++ H ++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 171 ECPTCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMH 220
EC CGK +R+ LN H +TH+ +P+ CE C KT L H+ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 274 ECPTCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMH 323
EC CGK +R+ LN H +TH+ +P+ CE C KT L H+ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 81 GERHIKCEVCSLALLSKSHLKQHMRVHTGERPHECEVCGKRFAKRSNLNAH 131
G +C C S +L H+R HTGE+P++CE C A++++L H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYH 51
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%)
Query: 394 QCHLCGRCFNSPTTLTQHKIVHTGERRFKCDICGQALTTKPKLNDHMLLH 443
+C CG+ F S L H HTGE+ +KC+ C A K L H+ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%)
Query: 59 CDLCGKGFIHLKSYQIHKMIHSGERHIKCEVCSLALLSKSHLKQHMRVH 107
C CGK F IH H+GE+ KCE C A K+ L+ H+ H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
E+ FKCDICG++ + +LN H ++HT EKP
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
E+ KC++C + +S L +H VHT E+P
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 225 PFTCHFCNKSFTQKTGLERHLTIHNNEKKHQVS 257
PF C C KSF ++ L RH +H EK S
Sbjct: 12 PFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 328 PFTCHFCNKSFTQKTGLERHLTIHNNEK 355
PF C C KSF ++ L RH +H EK
Sbjct: 12 PFKCDICGKSFCGRSRLNRHSMVHTAEK 39
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 110 ERPHECEVCGKRFAKRSNLNAH 131
E+P +C++CGK F RS LN H
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRH 31
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGER 419
F+C +CG+ F + L +H +VHT E+
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEK 39
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 172 CPTCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHV 217
C CG + + S L KH +TH+D+RP+ C C ++TK +L H+
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 275 CPTCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHV 320
C CG + + S L KH +TH+D+RP+ C C ++TK +L H+
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 24/47 (51%)
Query: 87 CEVCSLALLSKSHLKQHMRVHTGERPHECEVCGKRFAKRSNLNAHKK 133
CE C + S LK+H+R HT RP+ C C F + NL H K
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 198 FVCEICGQGYRTKTHLLVHVGMHNGIHPFTCHFCNKSFTQKTGLERHLTIHNNEKK 253
++CE CG + + L H+ H + P+ C +CN SF K L +H+ + KK
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 301 FVCEICGQGYRTKTHLLVHVGMHNGIHPFTCHFCNKSFTQKTGLERHLTIHNNEKK 356
++CE CG + + L H+ H + P+ C +CN SF K L +H+ + KK
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 420 RFKCDICGQALTTKPKLNDHMLLHTGEKPHECNVCGARFAKKWNMQVH-KQKVHG 473
++ C+ CG L H+ HT +P+ C C F K N+ H K K H
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS 55
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 21/48 (43%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGERRFKCDICGQALTTKPKLNDHM 440
+ C CG P+ L +H HT R + C C + TK L HM
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 90 CSLALLSKSHLKQHMRVHTGERPHECEV--CGKRFAKRSNLNAHKK 133
C SHLK H R HTGE+P C C +RFA+ L+ H++
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR 70
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 193 SDLRPFVCE--ICGQGYRTKTHLLVHVGMHNGIHPFTCHF--CNKSFTQKTGLERHLTIH 248
S +R +C CG+ Y +HL H H G PF+C + C + F + L RH H
Sbjct: 13 SRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 296 SDLRPFVCE--ICGQGYRTKTHLLVHVGMHNGIHPFTCHF--CNKSFTQKTGLERHLTIH 351
S +R +C CG+ Y +HL H H G PF+C + C + F + L RH H
Sbjct: 13 SRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 173 PTCGKKWRTRSELNKHTKTHSDLRPFVCEICG 204
P CGK + S L HT+TH+ +PF C G
Sbjct: 23 PGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKG 54
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 276 PTCGKKWRTRSELNKHTKTHSDLRPFVCEICG 307
P CGK + S L HT+TH+ +PF C G
Sbjct: 23 PGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKG 54
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 426 CGQALTTKPKLNDHMLLHTGEKPHECNV--CGARFAKKWNMQVHKQ 469
CG+ L H HTGEKP C+ C RFA+ + H++
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR 70
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 416 TGERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
T E+ F+CD C ++ + LN H ++HTGEKP
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 225 PFTCHFCNKSFTQKTGLERHLTIHNNEK 252
PF C C+KSF Q++ L H IH EK
Sbjct: 12 PFRCDTCDKSFRQRSALNSHRMIHTGEK 39
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 328 PFTCHFCNKSFTQKTGLERHLTIHNNEK 355
PF C C+KSF Q++ L H IH EK
Sbjct: 12 PFRCDTCDKSFRQRSALNSHRMIHTGEK 39
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 108 TGERPHECEVCGKRFAKRSNLNAHK 132
T E+P C+ C K F +RS LN+H+
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHR 32
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
E+ +C+ C + +S L H +HTGE+P
Sbjct: 10 EKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 58 RCDLCGKGFIHLKSYQIHKMIHSGER 83
RCD C K F + H+MIH+GE+
Sbjct: 14 RCDTCDKSFRQRSALNSHRMIHTGEK 39
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGER 419
F+C C + F + L H+++HTGE+
Sbjct: 13 FRCDTCDKSFRQRSALNSHRMIHTGEK 39
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
E+ +C+VCS A K+HL QH + HTGE+P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
E+ ++C +C +A T K L H HTGEKP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 225 PFTCHFCNKSFTQKTGLERHLTIHNNEK 252
P+ C C+K+FTQK L +H H EK
Sbjct: 12 PYECKVCSKAFTQKAHLAQHQKTHTGEK 39
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 328 PFTCHFCNKSFTQKTGLERHLTIHNNEK 355
P+ C C+K+FTQK L +H H EK
Sbjct: 12 PYECKVCSKAFTQKAHLAQHQKTHTGEK 39
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 5/37 (13%)
Query: 110 ERPHECEVCGKRFAKRSNLNAHKKKVTRHTGRDEVPS 146
E+P+EC+VC K F ++++L H+K HTG E PS
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQK---THTG--EKPS 41
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 196 RPFVCEICGQGYRTKTHLLVHVGMHNGIHP 225
+P+ C++C + + K HL H H G P
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 299 RPFVCEICGQGYRTKTHLLVHVGMHNGIHP 328
+P+ C++C + + K HL H H G P
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGER 419
++C +C + F L QH+ HTGE+
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEK 39
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 80 SGERHIKCEVCSLALLSKSHLKQHMRVHT---GERPHECEVCGKRFAKRSNLNAHKKK 134
SG ++CE+C K+ L H R H CE CGKRF K ++ AH+ K
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSK 60
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 416 TGERRFKCDICGQALTTKPKLNDHMLLHT---GEKPHECNVCGARFAKKWNMQVHKQKVH 472
+G +C+ICG K LN H H C CG RF K ++ H+ K H
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Query: 473 GPDVRGTTES 482
+ ES
Sbjct: 63 PALLLAPQES 72
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 171 ECPTCGKKWRTRSELNKHTKTHSD----LRPFVCEICGQGYRTKTHLLVH 216
+C CG R ++ LN H + H++ LR F CE CG+ + + H
Sbjct: 9 QCEICGFTCRQKASLNWHQRKHAETVAALR-FPCEFCGKRFEKPDSVAAH 57
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 274 ECPTCGKKWRTRSELNKHTKTHSD----LRPFVCEICGQGYRTKTHLLVH 319
+C CG R ++ LN H + H++ LR F CE CG+ + + H
Sbjct: 9 QCEICGFTCRQKASLNWHQRKHAETVAALR-FPCEFCGKRFEKPDSVAAH 57
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 170 HECP--TCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMH 220
+ CP +C +++ EL +H + H+ +PF C IC + + HL H+ H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 273 HECP--TCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMH 323
+ CP +C +++ EL +H + H+ +PF C IC + + HL H+ H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 69 LKSYQIHKMIHSGERHIKCEV--CSLALLSKSHLKQHMRVHTGERPHECEVCGKRFAKRS 126
L +Y + KM R C V C L +H+R+HTG++P +C +C + F++
Sbjct: 9 LLNYVVPKM-----RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSD 63
Query: 127 NLNAH 131
+L H
Sbjct: 64 HLTTH 68
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 195 LRPFVCEI--CGQGYRTKTHLLVHVGMHNGIHPFTCHFCNKSFTQKTGLERHLTIH 248
+RP+ C + C + + L H+ +H G PF C C ++F++ L H+ H
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 298 LRPFVCEI--CGQGYRTKTHLLVHVGMHNGIHPFTCHFCNKSFTQKTGLERHLTIH 351
+RP+ C + C + + L H+ +H G PF C C ++F++ L H+ H
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 398 CGRCFNSPTTLTQHKIVHTGERRFKCDICGQALTTKPKLNDHMLLHT 444
C R F+ LT+H +HTG++ F+C IC + + L H+ HT
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 419 RRFKCDI--CGQALTTKPKLNDHMLLHTGEKPHECNVCGARFAKKWNMQVH 467
R + C + C + + +L H+ +HTG+KP +C +C F++ ++ H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 68
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 62 CGKGFIHLKSYQIHKMIHSGERHIKCEVCSLALLSKSHLKQHMRVHT 108
C + F H IH+G++ +C +C HL H+R HT
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
E+ ++C ICG++ T K +L+ H +HTGEKP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 446 EKPHECNVCGARFAKKWNMQVHKQ 469
EKP+EC++CG F KK + VH+Q
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQ 33
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 5/37 (13%)
Query: 110 ERPHECEVCGKRFAKRSNLNAHKKKVTRHTGRDEVPS 146
E+P+EC +CGK F K+S L+ H++ HTG E PS
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQ---IHTG--EKPS 41
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 225 PFTCHFCNKSFTQKTGLERHLTIHNNEK 252
P+ C C KSFT+K+ L H IH EK
Sbjct: 12 PYECSICGKSFTKKSQLHVHQQIHTGEK 39
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 328 PFTCHFCNKSFTQKTGLERHLTIHNNEK 355
P+ C C KSFT+K+ L H IH EK
Sbjct: 12 PYECSICGKSFTKKSQLHVHQQIHTGEK 39
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
E+ +C +C + KS L H ++HTGE+P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 196 RPFVCEICGQGYRTKTHLLVHVGMHNGIHP 225
+P+ C ICG+ + K+ L VH +H G P
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 299 RPFVCEICGQGYRTKTHLLVHVGMHNGIHP 328
+P+ C ICG+ + K+ L VH +H G P
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGER 419
++C +CG+ F + L H+ +HTGE+
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEK 39
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 55 KYTRCDLCGKGFIHLKSYQIHKMIHSGER 83
K C +CGK F +H+ IH+GE+
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEK 39
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 34/93 (36%), Gaps = 26/93 (27%)
Query: 112 PHECEVCGKRFAKRSNLNAHKKKVTRHTGRDEVPSIKPLKRKRNISFLTGAREGMPLIHE 171
P + CG+ F+ R LN HKK H P
Sbjct: 9 PCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPE------------------------- 43
Query: 172 CPTCGKKWRTRSELNKHTKTHSDLRPFVCEICG 204
P CGK + + L +H K HSD R ++CE G
Sbjct: 44 -PACGKSFNFKKHLKEHMKLHSDTRDYICEFSG 75
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 160 TGAREGMPLIHECPTCGKKWRTRSELNKHTK-THSDLRPFVCE--ICGQGYRTKTHLLVH 216
+ GMP + P CG+ + R LN H K H + F C CG+ + K HL H
Sbjct: 2 SSGSSGMPC--DFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEH 59
Query: 217 VGMHNGIHPFTCHFCNKS 234
+ +H+ + C F S
Sbjct: 60 MKLHSDTRDYICEFSGPS 77
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 263 NRAREGMPLIHECPTCGKKWRTRSELNKHTK-THSDLRPFVCE--ICGQGYRTKTHLLVH 319
+ GMP + P CG+ + R LN H K H + F C CG+ + K HL H
Sbjct: 2 SSGSSGMPC--DFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEH 59
Query: 320 VGMHNGIHPFTCHFCNKS 337
+ +H+ + C F S
Sbjct: 60 MKLHSDTRDYICEFSGPS 77
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 398 CGRCFNSPTTLTQHK-IVHTGERRFKCD--ICGQALTTKPKLNDHMLLHTGEKPHECNVC 454
CGR F++ L HK H ++ F C CG++ K L +HM LH+ + + C
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74
Query: 455 G 455
G
Sbjct: 75 G 75
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 59 CDLCGKGFI-----HLKSYQIHKMIHSGERHIKCEVCSLALLSKSHLKQHMRVHTGERPH 113
CD G G I +L ++ ++ IH C + K HLK+HM++H+ R +
Sbjct: 10 CDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDY 69
Query: 114 ECEVCG 119
CE G
Sbjct: 70 ICEFSG 75
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
E+R+KC+ CG+ + +L+ H +HTGEKP
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
E+ KC C S L QH ++HTGE+P
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 21/27 (77%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGER 419
++C+ CG+ F+ + L+QH+ +HTGE+
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEK 39
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
E+ KC+VC SHL+ H RVHTGE+P
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
E+ +KCD+CG+ + L H +HTGEKP
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 58 RCDLCGKGFIHLKSYQIHKMIHSGER 83
+CD+CGK F Q H+ +H+GE+
Sbjct: 14 KCDVCGKEFSQSSHLQTHQRVHTGEK 39
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 5/37 (13%)
Query: 110 ERPHECEVCGKRFAKRSNLNAHKKKVTRHTGRDEVPS 146
E+ ++C+VCGK F++ S+L H++ HTG E PS
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQR---VHTG--EKPS 41
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGER 419
++C +CG+ F+ + L H+ VHTGE+
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEK 39
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
E+ KC+VC A SHL QH VH+GERP
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 196 RPFVCEICGQGYRTKTHLLVHVGMHNGIHP 225
+P+ C++CG+ +R +HL+ H +H+G P
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 299 RPFVCEICGQGYRTKTHLLVHVGMHNGIHP 328
+P+ C++CG+ +R +HL+ H +H+G P
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
E+ +KC +CG+A L H +H+GE+P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGER 419
++C +CG+ F + L QH VH+GER
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGER 39
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
E+ +KC+ CG+A + KL H +HTGEKP
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
E+ KC C A S L +H R+HTGE+P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 225 PFTCHFCNKSFTQKTGLERHLTIHNNEK 252
P+ C+ C K+F+Q + L RH IH EK
Sbjct: 12 PYKCNECGKAFSQTSKLARHQRIHTGEK 39
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 328 PFTCHFCNKSFTQKTGLERHLTIHNNEK 355
P+ C+ C K+F+Q + L RH IH EK
Sbjct: 12 PYKCNECGKAFSQTSKLARHQRIHTGEK 39
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGER 419
++C+ CG+ F+ + L +H+ +HTGE+
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEK 39
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 22/28 (78%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGERR 420
++C+ CG+ F + + LT H+++HTGE+R
Sbjct: 13 YKCYECGKAFRTRSNLTTHQVIHTGEKR 40
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 416 TGERRFKCDICGQALTTKPKLNDHMLLHTGEK 447
T E+ +KC CG+A T+ L H ++HTGEK
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 108 TGERPHECEVCGKRFAKRSNLNAHK 132
T E+P++C CGK F RSNL H+
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQ 32
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 225 PFTCHFCNKSFTQKTGLERHLTIHNNEKKHQVS 257
P+ C+ C K+F ++ L H IH EK+ S
Sbjct: 12 PYKCYECGKAFRTRSNLTTHQVIHTGEKRSGPS 44
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 328 PFTCHFCNKSFTQKTGLERHLTIHNNEKK 356
P+ C+ C K+F ++ L H IH EK+
Sbjct: 12 PYKCYECGKAFRTRSNLTTHQVIHTGEKR 40
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 196 RPFVCEICGQGYRTKTHLLVHVGMHNG 222
+P+ C CG+ +RT+++L H +H G
Sbjct: 11 KPYKCYECGKAFRTRSNLTTHQVIHTG 37
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 299 RPFVCEICGQGYRTKTHLLVHVGMHNG 325
+P+ C CG+ +RT+++L H +H G
Sbjct: 11 KPYKCYECGKAFRTRSNLTTHQVIHTG 37
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGER 111
E+ KC C A ++S+L H +HTGE+
Sbjct: 10 EKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 443 HTGEKPHECNVCGARFAKKWNMQVHKQKVHGPDV 476
H+GEKP+EC +C ARF + M++H + H +V
Sbjct: 10 HSGEKPYECYICHARFTQSGTMKMHILQKHTENV 43
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 105 RVHTGERPHECEVCGKRFAKRSNLNAH 131
R H+GE+P+EC +C RF + + H
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMH 34
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 414 VHTGERRFKCDICGQALTTKPKLNDHMLLHTGEKPHE--CNVCGARFAKKWNMQVHKQKV 471
H+GE+ ++C IC T + H+L E + C C A+K ++ VH +K
Sbjct: 9 THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQ 68
Query: 472 H 472
H
Sbjct: 69 H 69
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
ER + C +CG+A T + L H +HTGEKP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 23/37 (62%), Gaps = 5/37 (13%)
Query: 110 ERPHECEVCGKRFAKRSNLNAHKKKVTRHTGRDEVPS 146
ERP+ C VCGK F RSNL H+K HTG E PS
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKI---HTG--EKPS 41
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
ER C VC A +S+L +H ++HTGE+P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 196 RPFVCEICGQGYRTKTHLLVHVGMHNGIHP 225
RP++C +CG+ + +++L+ H +H G P
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 299 RPFVCEICGQGYRTKTHLLVHVGMHNGIHP 328
RP++C +CG+ + +++L+ H +H G P
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 225 PFTCHFCNKSFTQKTGLERHLTIHNNEK 252
P+ C C K+FT ++ L +H IH EK
Sbjct: 12 PYICTVCGKAFTDRSNLIKHQKIHTGEK 39
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 328 PFTCHFCNKSFTQKTGLERHLTIHNNEK 355
P+ C C K+FT ++ L +H IH EK
Sbjct: 12 PYICTVCGKAFTDRSNLIKHQKIHTGEK 39
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGER 419
+ C +CG+ F + L +H+ +HTGE+
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEK 39
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
E+ FKC+ CG+ T +L+ H +HTGEKP
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
E+ KCE C S L H RVHTGE+P
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 5/37 (13%)
Query: 110 ERPHECEVCGKRFAKRSNLNAHKKKVTRHTGRDEVPS 146
E+P +CE CGKRF + S L++H++ HTG E PS
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQR---VHTG--EKPS 41
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 225 PFTCHFCNKSFTQKTGLERHLTIHNNEK 252
PF C C K FTQ + L H +H EK
Sbjct: 12 PFKCEECGKRFTQNSQLHSHQRVHTGEK 39
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 328 PFTCHFCNKSFTQKTGLERHLTIHNNEK 355
PF C C K FTQ + L H +H EK
Sbjct: 12 PFKCEECGKRFTQNSQLHSHQRVHTGEK 39
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
ERH +C C A + KS L H R+H GE+P
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
ER ++C CG+A K L+ H +H GEKP
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGER 419
++C CG+ F +TL+ H+ +H GE+
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEK 39
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 55 KYTRCDLCGKGFIHLKSYQIHKMIHSGER 83
++ C CGK FI + +H+ IH GE+
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIHRGEK 39
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
ERH +C C A KS L H R+HTGE+P
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
ER ++C CG+A K L H +HTGEKP
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGER 419
++C CG+ F +TL H+ +HTGE+
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEK 39
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 5/37 (13%)
Query: 110 ERPHECEVCGKRFAKRSNLNAHKKKVTRHTGRDEVPS 146
ER +EC CGK FA++S L H++ HTG E PS
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRI---HTG--EKPS 41
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
E+ CE C A + S L++H R+HTGE+P
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
E+ + C+ CG+A +L +H +HTGEKP
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 55 KYTRCDLCGKGFIHLKSYQIHKMIHSGER 83
K C+ CGK FIH Q H+ IH+GE+
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEK 39
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 225 PFTCHFCNKSFTQKTGLERHLTIHNNEK 252
P+ C C K+F + L+ H IH EK
Sbjct: 12 PYNCEECGKAFIHDSQLQEHQRIHTGEK 39
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 328 PFTCHFCNKSFTQKTGLERHLTIHNNEK 355
P+ C C K+F + L+ H IH EK
Sbjct: 12 PYNCEECGKAFIHDSQLQEHQRIHTGEK 39
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 35.8 bits (81), Expect = 0.052, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 196 RPFVCEICGQGYRTKTHLLVHVGMHNGI 223
+P+VC CG+ + K+ L+VH G+H G+
Sbjct: 9 KPYVCSDCGKAFTFKSQLIVHQGIHTGV 36
Score = 35.8 bits (81), Expect = 0.052, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 299 RPFVCEICGQGYRTKTHLLVHVGMHNGI 326
+P+VC CG+ + K+ L+VH G+H G+
Sbjct: 9 KPYVCSDCGKAFTFKSQLIVHQGIHTGV 36
Score = 30.0 bits (66), Expect = 2.9, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 416 TGERRFKCDICGQALTTKPKLNDHMLLHTG 445
+GE+ + C CG+A T K +L H +HTG
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 28.9 bits (63), Expect = 8.1, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 108 TGERPHECEVCGKRFAKRSNLNAHK 132
+GE+P+ C CGK F +S L H+
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQ 30
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
ER KC C + + +HL QH R+HTGE+P
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
ER KC+ CG++ L H +HTGEKP
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 110 ERPHECEVCGKRFAKRSNLNAHKK 133
ERPH+C CGK F + ++L H++
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQR 33
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
E+ +KC+ CG+A L H ++HTGEKP
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 21/27 (77%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGER 419
++C+ CG+ F + + LT H+++HTGE+
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEK 39
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
E+ KC C A + S+L H +HTGE+P
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 193 SDLRPFVCEICGQGYRTKTHLLVHVGMHNGIHP 225
S +P+ C CG+ + K+ L+VH G+H G+ P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 296 SDLRPFVCEICGQGYRTKTHLLVHVGMHNGIHP 328
S +P+ C CG+ + K+ L+VH G+H G+ P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 416 TGERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
+GE+ + C+ CG+A T K +L H +HTG KP
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 444 TGEKPHECNVCGARFAKKWNMQVHK 468
+GEKP+ CN CG F K + VHK
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHK 30
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 108 TGERPHECEVCGKRFAKRSNLNAHK 132
+GE+P+ C CGK F +S L HK
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHK 30
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 80 SGERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
SGE+ C C A KS L H VHTG +P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
E+ +C C A K++L QH R+HTGE+P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
E+ ++C CG+A K L H +HTGEKP
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGER 419
++C CG+ F LTQH+ +HTGE+
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEK 39
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 225 PFTCHFCNKSFTQKTGLERHLTIHNNEK 252
P+ C C K+F QK L +H IH EK
Sbjct: 12 PYRCGECGKAFAQKANLTQHQRIHTGEK 39
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 328 PFTCHFCNKSFTQKTGLERHLTIHNNEK 355
P+ C C K+F QK L +H IH EK
Sbjct: 12 PYRCGECGKAFAQKANLTQHQRIHTGEK 39
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 5/37 (13%)
Query: 110 ERPHECEVCGKRFAKRSNLNAHKKKVTRHTGRDEVPS 146
E+P+ C CGK FA+++NL H++ HTG E PS
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRI---HTG--EKPS 41
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 446 EKPHECNVCGARFAKKWNMQVHKQKVH 472
EKP+ C CG FA+K N+ H Q++H
Sbjct: 10 EKPYRCGECGKAFAQKANLTQH-QRIH 35
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 195 LRPFVCEICGQGYRTKTHLLVHVGMHNG 222
++P+VC CG+ +R+K++L++H H G
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHTG 37
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 298 LRPFVCEICGQGYRTKTHLLVHVGMHNG 325
++P+VC CG+ +R+K++L++H H G
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHTG 37
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
E+ +KC+ CG+ T L +H +HTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
E+ KC C SHL H R+HTGE+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 225 PFTCHFCNKSFTQKTGLERHLTIHNNEK 252
P+ C+ C K FTQ + L H IH EK
Sbjct: 12 PYKCNECGKVFTQNSHLTNHWRIHTGEK 39
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 328 PFTCHFCNKSFTQKTGLERHLTIHNNEK 355
P+ C+ C K FTQ + L H IH EK
Sbjct: 12 PYKCNECGKVFTQNSHLTNHWRIHTGEK 39
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGER 419
++C+ CG+ F + LT H +HTGE+
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEK 39
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
E+ FKC CG+ + + LN H LHTGEKP
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 5/37 (13%)
Query: 110 ERPHECEVCGKRFAKRSNLNAHKKKVTRHTGRDEVPS 146
E+P +C CGK F++RS LN H K HTG E PS
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHK---LHTG--EKPS 41
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 196 RPFVCEICGQGYRTKTHLLVHVGMHNGIHP 225
+PF C CG+G+ ++ L VH +H G P
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 299 RPFVCEICGQGYRTKTHLLVHVGMHNGIHP 328
+PF C CG+G+ ++ L VH +H G P
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.4 bits (80), Expect = 0.075, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 80 SGERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
SG + C C A SKS+L HMR HTGE+P
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 35.4 bits (80), Expect = 0.083, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 193 SDLRPFVCEICGQGYRTKTHLLVHVGMHNGIHP 225
S ++P+ C CG+ +R+K++L++H+ H G P
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 35.4 bits (80), Expect = 0.083, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 296 SDLRPFVCEICGQGYRTKTHLLVHVGMHNGIHP 328
S ++P+ C CG+ +R+K++L++H+ H G P
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 33.1 bits (74), Expect = 0.42, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 416 TGERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
+G + + C CG+A +K L HM HTGEKP
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
E+ KCE C SK +L H +VHTGERP
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
E+ +KC+ CG+ +K L+ H +HTGE+P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 196 RPFVCEICGQGYRTKTHLLVHVGMHNGIHP 225
+P+ CE CG+GY +K +L +H +H G P
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 299 RPFVCEICGQGYRTKTHLLVHVGMHNGIHP 328
+P+ CE CG+GY +K +L +H +H G P
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGER 419
++C CG+ +NS L H+ VHTGER
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGER 39
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 110 ERPHECEVCGKRFAKRSNLNAHKKKVTRHTG-RDEVPS 146
E+P++CE CGK + + NL+ H+K HTG R PS
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQK---VHTGERPSGPS 44
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 446 EKPHECNVCGARFAKKWNMQVHKQKVH 472
EKP++C CG + K+N+ +H QKVH
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMH-QKVH 35
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 226 FTCHFCNKSFTQKTGLERHLTIHNNEK 252
FTC +CNK F K L+ HL IH NEK
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 329 FTCHFCNKSFTQKTGLERHLTIHNNEK 355
FTC +CNK F K L+ HL IH NEK
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
E+ +C+ C A +HL QH RVHTGE+P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGER 419
++C CG+ F+ T L QH+ VHTGE+
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEK 39
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
E+ ++C CG+A + L H +HTGEKP
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 196 RPFVCEICGQGYRTKTHLLVHVGMHNGIHP 225
+P+ C+ CG+ + THL+ H +H G P
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 299 RPFVCEICGQGYRTKTHLLVHVGMHNGIHP 328
+P+ C+ CG+ + THL+ H +H G P
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 225 PFTCHFCNKSFTQKTGLERHLTIHNNEK 252
P+ C C K+F+Q T L +H +H EK
Sbjct: 12 PYECKECGKAFSQTTHLIQHQRVHTGEK 39
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 328 PFTCHFCNKSFTQKTGLERHLTIHNNEK 355
P+ C C K+F+Q T L +H +H EK
Sbjct: 12 PYECKECGKAFSQTTHLIQHQRVHTGEK 39
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
E+ ++C+ CG+A + + L H +HTG+KP
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Query: 110 ERPHECEVCGKRFAKRSNLNAHKKKVTRHTGR 141
E+P+EC CGK F+ RS+L H+ HTG+
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQ---AIHTGK 38
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 21/27 (77%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGER 419
++C+ CG+ F+ ++LT H+ +HTG++
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKK 39
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 446 EKPHECNVCGARFAKKWNMQVHKQKVH 472
EKP+ECN CG F+ + ++ H Q +H
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTH-QAIH 35
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
E+ +CE C SHL H RVHTGE+P
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
E+ F+C+ CG+ T L+ H +HTGEKP
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 5/37 (13%)
Query: 110 ERPHECEVCGKRFAKRSNLNAHKKKVTRHTGRDEVPS 146
E+P +CE CGKRF + S+L++H++ HTG E PS
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRV---HTG--EKPS 41
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 225 PFTCHFCNKSFTQKTGLERHLTIHNNEK 252
PF C C K FTQ + L H +H EK
Sbjct: 12 PFQCEECGKRFTQNSHLHSHQRVHTGEK 39
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 328 PFTCHFCNKSFTQKTGLERHLTIHNNEK 355
PF C C K FTQ + L H +H EK
Sbjct: 12 PFQCEECGKRFTQNSHLHSHQRVHTGEK 39
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGER 419
FQC CG+ F + L H+ VHTGE+
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEK 39
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 196 RPFVCEICGQGYRTKTHLLVHVGMHNGIHP 225
+PF CE CG+ + +HL H +H G P
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 299 RPFVCEICGQGYRTKTHLLVHVGMHNGIHP 328
+PF CE CG+ + +HL H +H G P
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
E+ C C + + KSHL +H R+HTGE+P
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 225 PFTCHFCNKSFTQKTGLERHLTIHNNEK 252
P+ C+ C KSF QK+ L RH IH EK
Sbjct: 12 PYICNECGKSFIQKSHLNRHRRIHTGEK 39
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 328 PFTCHFCNKSFTQKTGLERHLTIHNNEK 355
P+ C+ C KSF QK+ L RH IH EK
Sbjct: 12 PYICNECGKSFIQKSHLNRHRRIHTGEK 39
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
E+ + C+ CG++ K LN H +HTGEKP
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 5/37 (13%)
Query: 110 ERPHECEVCGKRFAKRSNLNAHKKKVTRHTGRDEVPS 146
E+P+ C CGK F ++S+LN H++ HTG E PS
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRI---HTG--EKPS 41
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 196 RPFVCEICGQGYRTKTHLLVHVGMHNGIHP 225
+P++C CG+ + K+HL H +H G P
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 299 RPFVCEICGQGYRTKTHLLVHVGMHNGIHP 328
+P++C CG+ + K+HL H +H G P
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
E+ KC+ C A HL H+R+HTGE+P
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
E+ FKC CG+A L H+ +HTGEKP
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 196 RPFVCEICGQGYRTKTHLLVHVGMHNGIHP 225
+PF C+ CG+ +R HL H+ +H G P
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 299 RPFVCEICGQGYRTKTHLLVHVGMHNGIHP 328
+PF C+ CG+ +R HL H+ +H G P
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 225 PFTCHFCNKSFTQKTGLERHLTIHNNEK 252
PF C C K+F Q L HL IH EK
Sbjct: 12 PFKCKECGKAFRQNIHLASHLRIHTGEK 39
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 328 PFTCHFCNKSFTQKTGLERHLTIHNNEK 355
PF C C K+F Q L HL IH EK
Sbjct: 12 PFKCKECGKAFRQNIHLASHLRIHTGEK 39
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 419 RRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
+ F+C CG+A T K L+ H +HTGEKP
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 83 RHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
+H +C C A KS L H ++HTGE+P
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGER 419
F+C CG+ F +TL+ H+ +HTGE+
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEK 39
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 226 FTCHFCNKSFTQKTGLERHLTIHNNEK 252
F C C K+FT+K+ L H IH EK
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEK 39
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 329 FTCHFCNKSFTQKTGLERHLTIHNNEK 355
F C C K+FT+K+ L H IH EK
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEK 39
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
E+ KC C + + HL QH RVHTGE+P
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
E+ FKC CG++ + L H +HTGEKP
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGER 419
F+C CG+ +N LTQH+ VHTGE+
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEK 39
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 225 PFTCHFCNKSFTQKTGLERHLTIHNNEK 252
PF C C KS+ Q+ L +H +H EK
Sbjct: 12 PFKCGECGKSYNQRVHLTQHQRVHTGEK 39
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 328 PFTCHFCNKSFTQKTGLERHLTIHNNEK 355
PF C C KS+ Q+ L +H +H EK
Sbjct: 12 PFKCGECGKSYNQRVHLTQHQRVHTGEK 39
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 196 RPFVCEICGQGYRTKTHLLVHVGMHNGIHP 225
+PF C CG+ Y + HL H +H G P
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 299 RPFVCEICGQGYRTKTHLLVHVGMHNGIHP 328
+PF C CG+ Y + HL H +H G P
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 86 KCEVCSLALLSKSHLKQHMRVHTGERP 112
+C C KSHL QH R+HTGE+P
Sbjct: 14 QCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 422 KCDICGQALTTKPKLNDHMLLHTGEKP 448
+C CG+ T K LN H +HTGEKP
Sbjct: 14 QCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 394 QCHLCGRCFNSPTTLTQHKIVHTGER 419
QCH CGR F + L QH+ +HTGE+
Sbjct: 14 QCHECGRGFTLKSHLNQHQRIHTGEK 39
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
E+ ++C CG+A T + L H +HTGEKP
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
E+ +C C A +S+L H ++HTGE+P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Query: 110 ERPHECEVCGKRFAKRSNLNAHKKKVTRHTGRDEVPS 146
E+P+ C CGK F RSNL H+K HTG E PS
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKI---HTG--EKPS 41
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 225 PFTCHFCNKSFTQKTGLERHLTIHNNEK 252
P+ C C K+FT ++ L H IH EK
Sbjct: 12 PYRCAECGKAFTDRSNLFTHQKIHTGEK 39
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 328 PFTCHFCNKSFTQKTGLERHLTIHNNEK 355
P+ C C K+FT ++ L H IH EK
Sbjct: 12 PYRCAECGKAFTDRSNLFTHQKIHTGEK 39
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 54/110 (49%), Gaps = 8/110 (7%)
Query: 8 NNLVKIYLLVIDEKVLIVRKLVDNGHKIFLCNTEPGMPD--SLLINEIAKYTRCDLCGKG 65
N +K+ ++ D K+L RK ++N H + EP P+ +L++ + + + D +
Sbjct: 317 NEFLKLNSVLGDTKLLPQRKKIENPHPLLQTTVEPSKPEQREMLLDALLEISDSDPLLRY 376
Query: 66 FIHLKSYQIHKMIHSGERHIKCEVCSLALLSKSHLKQHMR---VHTGERP 112
++ + H++I S ++ EV S L K H++ ++ V ERP
Sbjct: 377 YVDSTT---HEIILSFLGKVQMEVISALLQEKYHVEIELKEPTVIYMERP 423
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
E+ F+C CG++ + +L H +HTGEKP
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
E+ +C C + S L H R+HTGE+P
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGER 419
F+C CG+ F+ + L H+ +HTGE+
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEK 39
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 225 PFTCHFCNKSFTQKTGLERHLTIHNNEK 252
PF C C KSF+ + L H IH EK
Sbjct: 12 PFECAECGKSFSISSQLATHQRIHTGEK 39
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 328 PFTCHFCNKSFTQKTGLERHLTIHNNEK 355
PF C C KSF+ + L H IH EK
Sbjct: 12 PFECAECGKSFSISSQLATHQRIHTGEK 39
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 419 RRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
+ + C+ CG+A + L H ++HTGEKP
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 21/27 (77%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGER 419
+ C+ CG+ F+ ++LT H+++HTGE+
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEK 39
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 223 IHPFTCHFCNKSFTQKTGLERHLTIHNNEK 252
+ P+ C+ C K+F+ + L H IH EK
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGEK 39
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 326 IHPFTCHFCNKSFTQKTGLERHLTIHNNEK 355
+ P+ C+ C K+F+ + L H IH EK
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGEK 39
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
E+ F C CG+A + LN H +HTGEKP
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 225 PFTCHFCNKSFTQKTGLERHLTIHNNEKKHQVS 257
PF C C K+F+ GL +H IH EK S
Sbjct: 12 PFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 328 PFTCHFCNKSFTQKTGLERHLTIHNNEK 355
PF C C K+F+ GL +H IH EK
Sbjct: 12 PFDCIDCGKAFSDHIGLNQHRRIHTGEK 39
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGER 419
F C CG+ F+ L QH+ +HTGE+
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEK 39
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
E+ C C A L QH R+HTGE+P
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 110 ERPHECEVCGKRFAKRSNLNAHKK 133
E+P+EC VCGK F+ R +L+ H++
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQR 33
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
E+ ++C +CG+A + + L+ H +H+G+KP
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 55 KYTRCDLCGKGFIHLKSYQIHKMIHSGER 83
K C +CGK F H +S +H+ IHSG++
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKK 39
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Query: 446 EKPHECNVCGARFAKKWNMQVHKQKVH 472
EKP+EC+VCG F+ + ++ VH Q++H
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVH-QRIH 35
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
E+ +C VC A + L H R+H+G++P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 196 RPFVCEICGQGYRTKTHLLVHVGMHNGIHP 225
+P+ C +CG+ + + L VH +H+G P
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 299 RPFVCEICGQGYRTKTHLLVHVGMHNGIHP 328
+P+ C +CG+ + + L VH +H+G P
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
E+ +KC+ CG+A + L H H+GEKP
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 196 RPFVCEICGQGYRTKTHLLVHVGMHNGIHP 225
+P+ C CG+ +R ++ L +H H+G P
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 299 RPFVCEICGQGYRTKTHLLVHVGMHNGIHP 328
+P+ C CG+ +R ++ L +H H+G P
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 170 HECPTCGKKWRTRSELNKHTKTHSDLRP 197
++C CGK +R RS L H THS +P
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 273 HECPTCGKKWRTRSELNKHTKTHSDLRP 300
++C CGK +R RS L H THS +P
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 55 KYTRCDLCGKGFIHLKSYQIHKMIHSGER 83
K +C+ CGK F S IH+ HSGE+
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEK 39
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
E+ KC C A ++S L H H+GE+P
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGER 419
++C+ CG+ F + ++L H+ H+GE+
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEK 39
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 21/26 (80%)
Query: 108 TGERPHECEVCGKRFAKRSNLNAHKK 133
+GE+P++C+ CGK F++R +L H++
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHER 31
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 20/26 (76%)
Query: 444 TGEKPHECNVCGARFAKKWNMQVHKQ 469
+GEKP++C CG F+++ ++ VH++
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHER 31
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 416 TGERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
+GE+ ++C CG++ + + L H LHTG P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 419 RRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
+ ++C+ CG+A + KL H +HTGEKP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGER 419
+QC+ CG+ F+ + L +H+ VHTGE+
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEK 39
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 225 PFTCHFCNKSFTQKTGLERHLTIHNNEK 252
P+ C+ C K+F+Q + L RH +H EK
Sbjct: 12 PYQCNECGKAFSQTSKLARHQRVHTGEK 39
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 328 PFTCHFCNKSFTQKTGLERHLTIHNNEK 355
P+ C+ C K+F+Q + L RH +H EK
Sbjct: 12 PYQCNECGKAFSQTSKLARHQRVHTGEK 39
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 83 RHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
+ +C C A S L +H RVHTGE+P
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
E+ ++CD+C +A + L H +H+GEKP
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
E+ +C+VC A + L QH RVH+GE+P
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGER 419
++C +C + F+ +LTQH+ VH+GE+
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEK 39
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 55 KYTRCDLCGKGFIHLKSYQIHKMIHSGER 83
K CD+C K F H S H+ +HSGE+
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEK 39
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 225 PFTCHFCNKSFTQKTGLERHLTIHNNEK 252
P+ C C K+F+ L +H +H+ EK
Sbjct: 12 PYECDVCRKAFSHHASLTQHQRVHSGEK 39
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 328 PFTCHFCNKSFTQKTGLERHLTIHNNEK 355
P+ C C K+F+ L +H +H+ EK
Sbjct: 12 PYECDVCRKAFSHHASLTQHQRVHSGEK 39
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 33.5 bits (75), Expect = 0.30, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
E+ + CD CG+A +L H +HTGEKP
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 29.6 bits (65), Expect = 3.7, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 225 PFTCHFCNKSFTQKTGLERHLTIHNNEK 252
P+ C +C K+F L RH IH EK
Sbjct: 12 PYVCDYCGKAFGLSAELVRHQRIHTGEK 39
Score = 29.6 bits (65), Expect = 3.7, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 328 PFTCHFCNKSFTQKTGLERHLTIHNNEK 355
P+ C +C K+F L RH IH EK
Sbjct: 12 PYVCDYCGKAFGLSAELVRHQRIHTGEK 39
Score = 29.3 bits (64), Expect = 5.3, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
E+ C+ C A + L +H R+HTGE+P
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 28.5 bits (62), Expect = 9.8, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 196 RPFVCEICGQGYRTKTHLLVHVGMHNGIHP 225
+P+VC+ CG+ + L+ H +H G P
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 28.5 bits (62), Expect = 9.8, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 299 RPFVCEICGQGYRTKTHLLVHVGMHNGIHP 328
+P+VC+ CG+ + L+ H +H G P
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 416 TGERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
T E FKC+ CG+ + L+ H L+H GE P
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGER 419
F+C+ CG+ F+ L++H+++H GE
Sbjct: 13 FKCNECGKTFSHSAHLSKHQLIHAGEN 39
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 224 HPFTCHFCNKSFTQKTGLERHLTIHNNE 251
HPF C+ C K+F+ L +H IH E
Sbjct: 11 HPFKCNECGKTFSHSAHLSKHQLIHAGE 38
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 327 HPFTCHFCNKSFTQKTGLERHLTIHNNE 354
HPF C+ C K+F+ L +H IH E
Sbjct: 11 HPFKCNECGKTFSHSAHLSKHQLIHAGE 38
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
E+ ++CD CG+A + K L H+ +HTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 196 RPFVCEICGQGYRTKTHLLVHVGMHNGIHP 225
+P+ C+ CG+ + K L+VH+ +H G P
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 299 RPFVCEICGQGYRTKTHLLVHVGMHNGIHP 328
+P+ C+ CG+ + K L+VH+ +H G P
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
E+ +C+ C A K L H+RVHTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Query: 110 ERPHECEVCGKRFAKRSNLNAHKKKVTRHTG 140
E+P+ C+ CGK F+++ +L H + HTG
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVH---IRVHTG 36
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
E+ +KC+ CG+ T L H +HTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 225 PFTCHFCNKSFTQKTGLERHLTIHNNEK 252
P+ C+ C K FTQ + L RH IH EK
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTGEK 39
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 328 PFTCHFCNKSFTQKTGLERHLTIHNNEK 355
P+ C+ C K FTQ + L RH IH EK
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTGEK 39
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
E+ KC C SHL +H +HTGE+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGER 419
++C+ CG+ F + L +H+ +HTGE+
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEK 39
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 196 RPFVCEICGQGYRTKTHLLVHVGMHNGIHP 225
+P+ C CG+ + +HL H G+H G P
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 299 RPFVCEICGQGYRTKTHLLVHVGMHNGIHP 328
+P+ C CG+ + +HL H G+H G P
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
E+ +KC+ CG+ + L H ++HTGEKP
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 55 KYTRCDLCGKGFIHLKSYQIHKMIHSGER 83
K +C+ CGKGFI + H M+H+GE+
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGEK 39
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
E+ KCE C + + L H VHTGE+P
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 190 KTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNGIH----PFTCHFCNKSFTQKTGLERHL 245
+TH+ +P+ C C + +R K L +H ++ + F C C K+FT++ + RH
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 293 KTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNGIH----PFTCHFCNKSFTQKTGLERHL 348
+TH+ +P+ C C + +R K L +H ++ + F C C K+FT++ + RH
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 25/85 (29%)
Query: 105 RVHTGERPHECEVCGKRFAKRSNLNAHKKKVTRHTGRDEVPSIKPLKRKRNISFLTGARE 164
R HTGE+P+ C C K F ++ L+ H KR + +F+
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMH------------------FKRYHDPNFV----- 44
Query: 165 GMPLIHECPTCGKKWRTRSELNKHT 189
P C CGK + R+ + +H
Sbjct: 45 --PAAFVCSKCGKTFTRRNTMARHA 67
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 443 HTGEKPHECNVCGARFAKKWNMQVHKQKVHGPDV 476
HTGEKP+ C+ C F +K + +H ++ H P+
Sbjct: 10 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNF 43
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 15/73 (20%)
Query: 220 HNGIHPFTCHFCNKSFTQKTGLERHLTIHNNEKKHQVSGRFSFNRAREGMPLIHECPTCG 279
H G P+ C C+K+F QK L+ H +++ +P C CG
Sbjct: 10 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNF---------------VPAAFVCSKCG 54
Query: 280 KKWRTRSELNKHT 292
K + R+ + +H
Sbjct: 55 KTFTRRNTMARHA 67
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 414 VHTGERRFKCDICGQALTTKPKLNDHMLLHTG----EKPHECNVCGARFAKKWNMQVHKQ 469
HTGE+ + C C + K L+ H + C+ CG F ++ M H
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHAD 68
Query: 470 KVHGPD 475
GPD
Sbjct: 69 NCAGPD 74
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
E+ +KCD+C ++ L H +HTGEKP
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
E+ KC+VC + S L H R+HTGE+P
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 58 RCDLCGKGFIHLKSYQIHKMIHSGER 83
+CD+C K F + S +H+ IH+GE+
Sbjct: 14 KCDVCHKSFRYGSSLTVHQRIHTGEK 39
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 108 TGERPHECEVCGKRFAKRSNLNAHKKKVTRHTG 140
+GE+P+EC CGK F +S L H++ T +G
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGESG 38
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 444 TGEKPHECNVCGARFAKKWNMQVHKQKVH 472
+GEKP+EC CG F K + +H Q+ H
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIH-QRTH 33
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 416 TGERRFKCDICGQALTTKPKLNDHMLLHTGE 446
+GE+ ++C CG+A K +L H HTGE
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 80 SGERHIKCEVCSLALLSKSHLKQHMRVHTGE 110
SGE+ +C C A KS L H R HTGE
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 33.1 bits (74), Expect = 0.39, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 199 VCEICGQGYRTKTHLLVHVGMHNGIHPFTCHFCNKSFTQKTGLERHL 245
+C +CG+ + +K H+ + + F C +C +F GL RH+
Sbjct: 30 LCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI 76
Score = 33.1 bits (74), Expect = 0.39, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 302 VCEICGQGYRTKTHLLVHVGMHNGIHPFTCHFCNKSFTQKTGLERHL 348
+C +CG+ + +K H+ + + F C +C +F GL RH+
Sbjct: 30 LCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI 76
Score = 29.3 bits (64), Expect = 6.0, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 170 HECPTCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNGIHP 225
H CP CG+ + ++ +H + + F C+ C + + L H+ N HP
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI---NKCHP 81
Score = 29.3 bits (64), Expect = 6.0, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 273 HECPTCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNGIHP 328
H CP CG+ + ++ +H + + F C+ C + + L H+ N HP
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI---NKCHP 81
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 80 SGERHIKCEVCSLALLSKSHLKQHMRVHTGE 110
SGE+ C C A + KSH H R+HTGE
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGE 36
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 193 SDLRPFVCEICGQGYRTKTHLLVHVGMHNG 222
S +P+VC CG+ + K+H + H +H G
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTG 35
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 296 SDLRPFVCEICGQGYRTKTHLLVHVGMHNG 325
S +P+VC CG+ + K+H + H +H G
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTG 35
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 108 TGERPHECEVCGKRFAKRSNLNAHKKKVTRHTG 140
+GE+P+ C CGK F ++S+ H++ T +G
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGESG 38
>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule
W259
Length = 287
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 10 LVKIYLLVIDEKVLIVRKLVDNGHKIFLCNTEPGMPDSLLINEIAKYTRCDLCGKGFIHL 69
LV++Y +V E + I+ + ++NG + T G+ L IN++ G FI
Sbjct: 78 LVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGI--KLTINKLLDMAAQIAEGMAFIEE 135
Query: 70 KSYQIHKMIHSG----ERHIKCEVCSLAL 94
++Y IH+ + + + C++ L
Sbjct: 136 RNY-IHRDLRAANILVSDTLSCKIADFGL 163
>pdb|2PL0|A Chain A, Lck Bound To Imatinib
Length = 289
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 10 LVKIYLLVIDEKVLIVRKLVDNGHKIFLCNTEPGMPDSLLINEIAKYTRCDLCGKGFIHL 69
LV++Y +V E + I+ + ++NG + T G+ L IN++ G FI
Sbjct: 80 LVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGI--KLTINKLLDMAAQIAEGMAFIEE 137
Query: 70 KSYQIHKMIHSG----ERHIKCEVCSLAL 94
++Y IH+ + + + C++ L
Sbjct: 138 RNY-IHRDLRAANILVSDTLSCKIADFGL 165
>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase
Domain Of Human Lck, (Auto-Phosphorylated On Tyr394)
pdb|2ZM4|A Chain A, Crystal Structure Of Imidazo Quinoxaline 1 Bound To The
Kinase Domain Of Human Lck, Activated Form (Auto-
Phosphorylated On Tyr394)
pdb|2ZYB|A Chain A, Crystal Structure Of Phenylimidazo Pyrazin 2 Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC1|A Chain A, Crystal Structure Of Pyrazin Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC2|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC3|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC4|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC5|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC8|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACJ|A Chain A, Crystal Structure Of Imidazo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACK|A Chain A, Crystal Structure Of Pyrrolo Pyrazine Derivative Bound To
The Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD4|A Chain A, Crystal Structure Of Methoxy Benzofuran Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AD5|A Chain A, Crystal Structure Of Triazolone Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD6|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
Length = 285
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 10 LVKIYLLVIDEKVLIVRKLVDNGHKIFLCNTEPGMPDSLLINEIAKYTRCDLCGKGFIHL 69
LV++Y +V E + I+ + ++NG + T G+ L IN++ G FI
Sbjct: 76 LVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGI--KLTINKLLDMAAQIAEGMAFIEE 133
Query: 70 KSYQIHKMIHSG----ERHIKCEVCSLAL 94
++Y IH+ + + + C++ L
Sbjct: 134 RNY-IHRDLRAANILVSDTLSCKIADFGL 161
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGE 110
E+ C VC A + +HL QH+RVHT E
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGE 446
E+ + C++CG+A LN H+ +HT E
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 110 ERPHECEVCGKRFAKRSNLNAHKKKVTRHT 139
E+P+ C VCGK F ++LN H + T+ T
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQET 39
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 225 PFTCHFCNKSFTQKTGLERHLTIHNNE 251
P++C+ C K+F L +HL +H E
Sbjct: 12 PYSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 328 PFTCHFCNKSFTQKTGLERHLTIHNNE 354
P++C+ C K+F L +HL +H E
Sbjct: 12 PYSCNVCGKAFVLSAHLNQHLRVHTQE 38
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.7 bits (73), Expect = 0.48, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
E+ C C A SKS+L HMR H+GE+P
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 32.3 bits (72), Expect = 0.64, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
E+ + C CG+A ++K L HM H+GEKP
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 21/30 (70%)
Query: 196 RPFVCEICGQGYRTKTHLLVHVGMHNGIHP 225
+P+ C CG+ + +K++L++H+ H+G P
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 21/30 (70%)
Query: 299 RPFVCEICGQGYRTKTHLLVHVGMHNGIHP 328
+P+ C CG+ + +K++L++H+ H+G P
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
E+ FKC+ CG+ T + H H+GEKP
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
E+ KCE C + S H R H+GE+P
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 196 RPFVCEICGQGYRTKTHLLVHVGMHNGIHP 225
+PF CE CG+G+ T + H H+G P
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 299 RPFVCEICGQGYRTKTHLLVHVGMHNGIHP 328
+PF CE CG+G+ T + H H+G P
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 80 SGERHIKCEVCSLALLSKSHLKQHMRVHTGER 111
SGE+ C C SKS+L H R+HTGE+
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 444 TGEKPHECNVCGARFAKKWNMQVHKQKVH 472
+GEKP+ CN CG F+ K + VH Q++H
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVH-QRIH 33
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 416 TGERRFKCDICGQALTTKPKLNDHMLLHTGEK 447
+GE+ + C+ CG+ ++K L H +HTGEK
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 189 TKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNG 222
+ S +P+ C CG+ + +K++L+VH +H G
Sbjct: 2 SSGSSGEKPYGCNECGKDFSSKSYLIVHQRIHTG 35
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 292 TKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNG 325
+ S +P+ C CG+ + +K++L+VH +H G
Sbjct: 2 SSGSSGEKPYGCNECGKDFSSKSYLIVHQRIHTG 35
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 108 TGERPHECEVCGKRFAKRSNLNAHKK 133
+GE+P+ C CGK F+ +S L H++
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQR 31
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGER 419
+ C+ CG+ F+S + L H+ +HTGE+
Sbjct: 11 YGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 221 NGIHPFTCHFCNKSFTQKTGLERHLTIHNNEK 252
+G P+ C+ C K F+ K+ L H IH EK
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 324 NGIHPFTCHFCNKSFTQKTGLERHLTIHNNEK 355
+G P+ C+ C K F+ K+ L H IH EK
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
E+ +KC+ CG+ T L H +HTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 225 PFTCHFCNKSFTQKTGLERHLTIHNNEK 252
P+ C+ C K FTQ + L RH IH EK
Sbjct: 12 PYKCNECGKVFTQNSHLVRHRGIHTGEK 39
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 328 PFTCHFCNKSFTQKTGLERHLTIHNNEK 355
P+ C+ C K FTQ + L RH IH EK
Sbjct: 12 PYKCNECGKVFTQNSHLVRHRGIHTGEK 39
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
E+ KC C SHL +H +HTGE+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 196 RPFVCEICGQGYRTKTHLLVHVGMHNGIHP 225
+P+ C CG+ + +HL+ H G+H G P
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 299 RPFVCEICGQGYRTKTHLLVHVGMHNGIHP 328
+P+ C CG+ + +HL+ H G+H G P
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGER 419
++C+ CG+ F + L +H+ +HTGE+
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEK 39
>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule
Inhibitor
Length = 288
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 10 LVKIYLLVIDEKVLIVRKLVDNGHKIFLCNTEPGMPDSLLINEIAKYTRCDLCGKGFIHL 69
LV++Y +V E + I+ + ++NG + T G+ L IN++ G FI
Sbjct: 79 LVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGI--KLTINKLLDMAAQIAEGMAFIEE 136
Query: 70 KSYQIHKMIHSG----ERHIKCEVCSLAL 94
++Y IH+ + + + C++ L
Sbjct: 137 RNY-IHRDLRAANILVSDTLSCKIADFGL 164
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Query: 110 ERPHECEVCGKRFAKRSNLNAHKKKVTRHTG 140
E+P++CE CG RF + ++L AH V HTG
Sbjct: 9 EKPYKCETCGARFVQVAHLRAH---VLIHTG 36
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
E+ KCE C + +HL+ H+ +HTG P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
E+ +KC+ CG L H+L+HTG P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 446 EKPHECNVCGARFAKKWNMQVH 467
EKP++C CGARF + +++ H
Sbjct: 9 EKPYKCETCGARFVQVAHLRAH 30
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 196 RPFVCEICGQGYRTKTHLLVHVGMHNGIHP 225
+P+ CE CG + HL HV +H G P
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 299 RPFVCEICGQGYRTKTHLLVHVGMHNGIHP 328
+P+ CE CG + HL HV +H G P
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
E+ +KC CG+ L H L+HTGEKP
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGER 419
++CH CG+ F + L +H+++HTGE+
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEK 39
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 225 PFTCHFCNKSFTQKTGLERHLTIHNNEK 252
P+ CH C K F + + L RH IH EK
Sbjct: 12 PYKCHECGKVFRRNSHLARHQLIHTGEK 39
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 328 PFTCHFCNKSFTQKTGLERHLTIHNNEK 355
P+ CH C K F + + L RH IH EK
Sbjct: 12 PYKCHECGKVFRRNSHLARHQLIHTGEK 39
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
E+ KC C SHL +H +HTGE+P
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
E+ +KC+ CG+ T L +H +HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
E+ KC C SHL H R+HTG +P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
pdb|1QPJ|A Chain A, Crystal Structure Of The Lymphocyte-Specific Kinase Lck In
Complex With Staurosporine.
pdb|1QPC|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 10 LVKIYLLVIDEKVLIVRKLVDNGHKIFLCNTEPGMPDSLLINEIAKYTRCDLCGKGFIHL 69
LV++Y +V E + I+ + ++NG + T G+ L IN++ G FI
Sbjct: 70 LVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGI--KLTINKLLDMAAQIAEGMAFIEE 127
Query: 70 KSYQIHKMIHSG----ERHIKCEVCSLAL 94
++Y IH+ + + + C++ L
Sbjct: 128 RNY-IHRDLRAANILVSDTLSCKIADFGL 155
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
E+ KC C SHL +H RVHTG +P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
E+ +KC+ CG+ T L H +HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 225 PFTCHFCNKSFTQKTGLERHLTIHNNEK 252
P+ C+ C K FTQ + L RH +H K
Sbjct: 12 PYKCNECGKVFTQNSHLARHRRVHTGGK 39
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 328 PFTCHFCNKSFTQKTGLERHLTIHNNEK 355
P+ C+ C K FTQ + L RH +H K
Sbjct: 12 PYKCNECGKVFTQNSHLARHRRVHTGGK 39
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 324 NGIHPFTCHFCNKSFTQKTGLERHLTIHNNEKKHQSG 360
+G P+ C C K+FTQ + L H +H E SG
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGESGPSSG 42
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 108 TGERPHECEVCGKRFAKRSNLNAHKKKVTRHTG 140
+GE+P+ C+ CGK F + S L+ H++ T +G
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGESG 38
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 221 NGIHPFTCHFCNKSFTQKTGLERHLTIHNNEK 252
+G P+ C C K+FTQ + L H +H E
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGES 37
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 416 TGERRFKCDICGQALTTKPKLNDHMLLHTGEK 447
+GE+ + C CG+A T L+ H +HTGE
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGES 37
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 80 SGERHIKCEVCSLALLSKSHLKQHMRVHTGE 110
SGE+ C+ C A S L H RVHTGE
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Query: 110 ERPHECEVCGKRFAKRSNLNAHKKKVTRHTGRD 142
E+P+EC CGK F K+S L+ H++ HTG +
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQR---IHTGEN 39
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
E+ +C C + + KS L H R+HTGE P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
E+ ++C CG++ K +L+ H +HTGE P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 446 EKPHECNVCGARFAKKWNMQVHKQKVH 472
EKP+EC+ CG F KK + VH Q++H
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVH-QRIH 35
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
E+ KC C A +HL +H R+HTG RP
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
E+ +KC CG+A LN+H +HTG +P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck
In Complex With Non-selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 10 LVKIYLLVIDEKVLIVRKLVDNGHKIFLCNTEPGMPDSLLINEIAKYTRCDLCGKGFIHL 69
LV++Y +V E + I+ + ++NG + T G+ L IN++ G FI
Sbjct: 70 LVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGI--KLTINKLLDMAAQIAEGMAFIEE 127
Query: 70 KSYQIHKMIHSG----ERHIKCEVCSLAL 94
++Y IH+ + + + C++ L
Sbjct: 128 RNY-IHRDLRAANILVSDTLSCKIADFGL 155
>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b
pdb|3BYU|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Reverse
Amide 23
Length = 277
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 10 LVKIYLLVIDEKVLIVRKLVDNGHKIFLCNTEPGMPDSLLINEIAKYTRCDLCGKGFIHL 69
LV++Y +V E + I+ + ++NG + T G+ L IN++ G FI
Sbjct: 76 LVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGI--KLTINKLLDMAAQIAEGMAFIEE 133
Query: 70 KSYQIHKMIHSG----ERHIKCEVCSLAL 94
++Y IH+ + + + C++ L
Sbjct: 134 RNY-IHRDLRAANILVSDTLSCKIADFGL 161
>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|2OFV|B Chain B, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|3B2W|A Chain A, Crystal Structure Of Pyrimidine Amide 11 Bound To Lck
Length = 277
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 10 LVKIYLLVIDEKVLIVRKLVDNGHKIFLCNTEPGMPDSLLINEIAKYTRCDLCGKGFIHL 69
LV++Y +V E + I+ + ++NG + T G+ L IN++ G FI
Sbjct: 75 LVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGI--KLTINKLLDMAAQIAEGMAFIEE 132
Query: 70 KSYQIHKMIHSG----ERHIKCEVCSLAL 94
++Y IH+ + + + C++ L
Sbjct: 133 RNY-IHRDLRAANILVSDTLSCKIADFGL 160
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
ER +C C L S+ QH R+HTGE+P
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 32.3 bits (72), Expect = 0.70, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 444 TGEKPHECNVCGARFAKKWNMQVH 467
+GEKP+ C VCG RF +K M H
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYH 29
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 108 TGERPHECEVCGKRFAKRSNLNAH 131
+GE+P+ C VCG RF ++ ++ H
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYH 29
>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43
Bound To Lck
Length = 273
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 10 LVKIYLLVIDEKVLIVRKLVDNGHKIFLCNTEPGMPDSLLINEIAKYTRCDLCGKGFIHL 69
LV++Y +V E + I+ + ++NG + T G+ L IN++ G FI
Sbjct: 72 LVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGI--KLTINKLLDMAAQIAEGMAFIEE 129
Query: 70 KSYQIHKMIHSG----ERHIKCEVCSLAL 94
++Y IH+ + + + C++ L
Sbjct: 130 RNY-IHRDLRAANILVSDTLSCKIADFGL 157
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 12/74 (16%)
Query: 88 EVCSLALLSKSHLKQHMRVHTGERPHEC--EVCGKRFAKRSNLNAHKKKVTRHTGRDEVP 145
E C A + LK H HT + P+EC E C KRF+ S L H+K H G
Sbjct: 7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK---VHAGY---- 59
Query: 146 SIKPLKRKRNISFL 159
P K+ + SF+
Sbjct: 60 ---PCKKDDSCSFV 70
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 198 FVC--EICGQGYRTKTHLLVHVGMHNGIHPFTC--HFCNKSFTQKTGLERHLTIH 248
+VC E CG+ ++ L VH H P+ C C+K F+ + L+RH +H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 301 FVC--EICGQGYRTKTHLLVHVGMHNGIHPFTC--HFCNKSFTQKTGLERHLTIH 351
+VC E CG+ ++ L VH H P+ C C+K F+ + L+RH +H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
E+ +C C A +KS+L H R HTGE+P
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
E+ F+C C +A TK L H HTGEKP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 196 RPFVCEICGQGYRTKTHLLVHVGMHNGIHP 225
+PF C C + + TK++L+VH H G P
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 299 RPFVCEICGQGYRTKTHLLVHVGMHNGIHP 328
+PF C C + + TK++L+VH H G P
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGER 419
F+C C + FN+ + L H+ HTGE+
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEK 39
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
E+ KC C S+L +H R+HTGE+P
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
E+ +KC+ CG+ L+ H +HTGEKP
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGER 419
++C+ CG+ F + L++H+ +HTGE+
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEK 39
>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1
Bound To Lck
Length = 272
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 10 LVKIYLLVIDEKVLIVRKLVDNGHKIFLCNTEPGMPDSLLINEIAKYTRCDLCGKGFIHL 69
LV++Y +V E + I+ + ++NG + T G+ L IN++ G FI
Sbjct: 71 LVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGI--KLTINKLLDMAAQIAEGMAFIEE 128
Query: 70 KSYQIHKMIHSG----ERHIKCEVCSLAL 94
++Y IH+ + + + C++ L
Sbjct: 129 RNY-IHRDLRAANILVSDTLSCKIADFGL 156
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
E+ + C+ CG+ + K L+ H HTGEKP
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 5/37 (13%)
Query: 110 ERPHECEVCGKRFAKRSNLNAHKKKVTRHTGRDEVPS 146
E+P+ C CGK F+++S L+AH++ HTG E PS
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQR---THTG--EKPS 41
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
E+ C C KS L H R HTGE+P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 225 PFTCHFCNKSFTQKTGLERHLTIHNNEK 252
P+ C+ C K+F+QK+ L H H EK
Sbjct: 12 PYGCNECGKTFSQKSILSAHQRTHTGEK 39
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 328 PFTCHFCNKSFTQKTGLERHLTIHNNEK 355
P+ C+ C K+F+QK+ L H H EK
Sbjct: 12 PYGCNECGKTFSQKSILSAHQRTHTGEK 39
>pdb|2M0D|A Chain A, Solution Structure Of Miz-1 Zinc Finger 5
Length = 30
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 223 IHPFTCHFCNKSFTQKTGLERHLTIHNNEK 252
+ P+ C +C +SF+ T RHL H+ +K
Sbjct: 1 MKPYQCDYCGRSFSDPTSKMRHLETHDTDK 30
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 326 IHPFTCHFCNKSFTQKTGLERHLTIHNNEK 355
+ P+ C +C +SF+ T RHL H+ +K
Sbjct: 1 MKPYQCDYCGRSFSDPTSKMRHLETHDTDK 30
>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine
Length = 267
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 10 LVKIYLLVIDEKVLIVRKLVDNGHKIFLCNTEPGMPDSLLINEIAKYTRCDLCGKGFIHL 69
LV++Y +V E + I+ + ++NG + T G+ L IN++ G FI
Sbjct: 66 LVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGI--KLTINKLLDMAAQIAEGMAFIEE 123
Query: 70 KSYQIHKMIHSG----ERHIKCEVCSLAL 94
++Y IH+ + + + C++ L
Sbjct: 124 RNY-IHRNLRAANILVSDTLSCKIADFGL 151
>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck),
Activated Form (Auto-Phosphorylated On Tyr394)
pdb|3BYO|A Chain A, X-Ray Co-Crystal Structure Of 2-Amino-6-Phenylpyrimido[5',
4':5,6]pyrimido[1,2-A]benzimidazol-5(6h)-One 25 Bound To
Lck
Length = 271
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 10 LVKIYLLVIDEKVLIVRKLVDNGHKIFLCNTEPGMPDSLLINEIAKYTRCDLCGKGFIHL 69
LV++Y +V E + I+ + ++NG + T G+ L IN++ G FI
Sbjct: 70 LVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGI--KLTINKLLDMAAQIAEGMAFIEE 127
Query: 70 KSYQIHKMIHSG----ERHIKCEVCSLAL 94
++Y IH+ + + + C++ L
Sbjct: 128 RNY-IHRDLRAANILVSDTLSCKIADFGL 155
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 225 PFTCHFCNKSFTQKTGLERHLTIHNNEK 252
P+ C+ C K FTQ + L RH IH EK
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTGEK 39
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 328 PFTCHFCNKSFTQKTGLERHLTIHNNEK 355
P+ C+ C K FTQ + L RH IH EK
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTGEK 39
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
++ +KC+ CG+ T L H +HTGEKP
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 86 KCEVCSLALLSKSHLKQHMRVHTGERP 112
KC C SHL +H +HTGE+P
Sbjct: 14 KCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGER 419
++C+ CG+ F + L +H+ +HTGE+
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEK 39
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 196 RPFVCEICGQGYRTKTHLLVHVGMHNGIHP 225
+P+ C CG+ + +HL H G+H G P
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 299 RPFVCEICGQGYRTKTHLLVHVGMHNGIHP 328
+P+ C CG+ + +HL H G+H G P
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck
pdb|2OF4|A Chain A, Crystal Structure Of Furanopyrimidine 1 Bound To Lck
Length = 271
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 10 LVKIYLLVIDEKVLIVRKLVDNGHKIFLCNTEPGMPDSLLINEIAKYTRCDLCGKGFIHL 69
LV++Y +V E + I+ + ++NG + T G+ L IN++ G FI
Sbjct: 70 LVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGI--KLTINKLLDMAAQIAEGMAFIEE 127
Query: 70 KSYQIHKMIHSG----ERHIKCEVCSLAL 94
++Y IH+ + + + C++ L
Sbjct: 128 RNY-IHRDLRAANILVSDTLSCKIADFGL 155
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEK 447
E+ +KC CG+A T K L+ H HTGE+
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 110 ERPHECEVCGKRFAKRSNLNAHKKKVT--RHTG 140
E+P++C CGK F ++S L+ H++ T RH+G
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSG 42
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 225 PFTCHFCNKSFTQKTGLERHLTIHNNEK 252
P+ C C K+FT+K+GL H H E+
Sbjct: 12 PYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 328 PFTCHFCNKSFTQKTGLERHLTIHNNEK 355
P+ C C K+FT+K+GL H H E+
Sbjct: 12 PYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 446 EKPHECNVCGARFAKKWNMQVHKQ 469
EKP++C+ CG F +K + +H+Q
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQ 33
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 55 KYTRCDLCGKGFIHLKSYQIHKMIHSGERH 84
K +C CGK F IH+ H+GERH
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGERH 40
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 12/74 (16%)
Query: 88 EVCSLALLSKSHLKQHMRVHTGERPHEC--EVCGKRFAKRSNLNAHKKKVTRHTGRDEVP 145
E C A + LK H HT + P+EC E C KRF+ S L H+K H G
Sbjct: 7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK---VHAGY---- 59
Query: 146 SIKPLKRKRNISFL 159
P K+ + SF+
Sbjct: 60 ---PCKKDDSCSFV 70
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 198 FVC--EICGQGYRTKTHLLVHVGMHNGIHPFTC--HFCNKSFTQKTGLERHLTIH 248
+VC E CG+ ++ L VH H P+ C C+K F+ + L+RH +H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 301 FVC--EICGQGYRTKTHLLVHVGMHNGIHPFTC--HFCNKSFTQKTGLERHLTIH 351
+VC E CG+ ++ L VH H P+ C C+K F+ + L+RH +H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 225 PFTCHFCNKSFTQKTGLERHLTIHNNEK 252
P C C K FT L+RHL IH+ EK
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 328 PFTCHFCNKSFTQKTGLERHLTIHNNEK 355
P C C K FT L+RHL IH+ EK
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 85 IKCEVCSLALLSKSHLKQHMRVHTGER 111
+KC C + +LK+H+R+H+GE+
Sbjct: 3 LKCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 421 FKCDICGQALTTKPKLNDHMLLHTGEK 447
KC CG+ TT L H+ +H+GEK
Sbjct: 3 LKCRECGKQFTTSGNLKRHLRIHSGEK 29
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 87 CEVCSLALLSKSHLKQHMR-VHTGERPHECEV 117
C+ C HL H++ VHT ERPH+C+V
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 419 RRFKCDICGQALTTKPKLNDHM-LLHTGEKPHECNV 453
+ + C CG+ + LN H+ +HT E+PH+C V
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 111 RPHECEVCGKRFAKRSNLNAHKKKV 135
+P+ C+ CGK F++ +LN H K+V
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQV 35
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 393 FQCHLCGRCFNSPTTLTQH-KIVHTGERRFKCDI 425
+ C CG+ F+ P L H K VHT ER KC +
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 419 RRFKCDICGQALTTKPKLNDHMLLHTGEKPHE 450
++ C+ICG+ LN H L H+GEKP+
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYS 42
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 83 RHIKCEVCSLALLSKSHLKQHMRVHTGERPHE 114
+ + CE+C HL +H H+GE+P+
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYS 42
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
E+ KC C A S QH R+HTG+RP
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGER 419
++C CG+ F ++ TQH+ +HTG+R
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQR 39
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
E+ +KC CG+A H LHTG++P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
pdb|2OG8|B Chain B, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
Length = 265
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 10 LVKIYLLVIDEKVLIVRKLVDNGHKIFLCNTEPGMPDSLLINEIAKYTRCDLCGKGFIHL 69
LV++Y +V E + I+ + ++NG + T G+ L IN++ G FI
Sbjct: 65 LVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGI--KLTINKLLDMAAQIAEGMAFIEE 122
Query: 70 KSYQIHKMIHSG----ERHIKCEVCSLAL 94
++Y IH+ + + + C++ L
Sbjct: 123 RNY-IHRDLRAANILVSDTLSCKIADFGL 150
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 87 CEVCSLALLSKSHLKQHMRVHTGER 111
CEVC+ A + HLK+H R HT E+
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEK 29
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEK 447
E+ +KC CG++ T K +L H HTGE+
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 110 ERPHECEVCGKRFAKRSNLNAHKKKVT--RHTG 140
E+P++C CGK F +S L H+K T RH+G
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSG 42
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGER 111
E+ KC C + KS L+ H + HTGER
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 55 KYTRCDLCGKGFIHLKSYQIHKMIHSGERH 84
K +C CGK F +IH+ H+GERH
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGERH 40
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
+R ++C CG+A TK L H HTGEKP
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 196 RPFVCEICGQGYRTKTHLLVHVGMHNGIHP 225
RP+ C CG+ ++TK+ L+ H H G P
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 299 RPFVCEICGQGYRTKTHLLVHVGMHNGIHP 328
RP+ C CG+ ++TK+ L+ H H G P
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 5/37 (13%)
Query: 110 ERPHECEVCGKRFAKRSNLNAHKKKVTRHTGRDEVPS 146
+RP+EC CGK F +S+L H++ HTG E PS
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRS---HTG--EKPS 41
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 221 NGIHPFTCHFCNKSFTQKTGLERHLTIHNN 250
+G PF C C +FT K RHL +H +
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVHTD 32
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 324 NGIHPFTCHFCNKSFTQKTGLERHLTIHNN 353
+G PF C C +FT K RHL +H +
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVHTD 32
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 416 TGERRFKCDICGQALTTKPKLNDHMLLHT 444
+G+R F C IC A TTK H+ +HT
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVHT 31
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 19/24 (79%)
Query: 110 ERPHECEVCGKRFAKRSNLNAHKK 133
E+P++CE CGK + +R NL+ H++
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQR 33
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 196 RPFVCEICGQGYRTKTHLLVHVGMHNG 222
+P+ CE CG+GY + +L +H +H G
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMG 37
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 299 RPFVCEICGQGYRTKTHLLVHVGMHNG 325
+P+ CE CG+GY + +L +H +H G
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMG 37
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
E+ + C CG++ + P L H LH+GEKP
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 197 PFVCEICGQGYRTKTHLLVHVGMHNGIHP 225
PF+C CG+ + KT+L++H +H G P
Sbjct: 12 PFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 300 PFVCEICGQGYRTKTHLLVHVGMHNGIHP 328
PF+C CG+ + KT+L++H +H G P
Sbjct: 12 PFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
E F C CG+ T K L H +HTGE+P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 59 CDLCGKGFIHLKSYQIHKMIHSGER 83
C CGK F H + IH+ IH+GER
Sbjct: 15 CSECGKVFTHKTNLIIHQKIHTGER 39
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGER 419
F C CG+ F T L H+ +HTGER
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGER 39
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 224 HPFTCHFCNKSFTQKTGLERHLTIHNNEK 252
+PF C C K FT KT L H IH E+
Sbjct: 11 NPFICSECGKVFTHKTNLIIHQKIHTGER 39
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 327 HPFTCHFCNKSFTQKTGLERHLTIHNNEK 355
+PF C C K FT KT L H IH E+
Sbjct: 11 NPFICSECGKVFTHKTNLIIHQKIHTGER 39
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 196 RPFVCEICGQGYRTKTHLLVHVGMHN 221
RPF C CG+G+ ++HL H+ +H+
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHS 36
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 299 RPFVCEICGQGYRTKTHLLVHVGMHN 324
RPF C CG+G+ ++HL H+ +H+
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHS 36
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEK 447
ER FKC+ CG+ + L H+ LH+ EK
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREK 39
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 225 PFTCHFCNKSFTQKTGLERHLTIHNNEKKHQVS 257
PF C+ C K F +++ L HL +H+ EK S
Sbjct: 12 PFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 328 PFTCHFCNKSFTQKTGLERHLTIHNNEK 355
PF C+ C K F +++ L HL +H+ EK
Sbjct: 12 PFKCNECGKGFGRRSHLAGHLRLHSREK 39
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 110 ERPHECEVCGKRFAKRSNLNAH 131
ERP +C CGK F +RS+L H
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGH 31
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGER 111
ER KC C +SHL H+R+H+ E+
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREK 39
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 221 NGIHPFTCHFCNKSFTQKTGLERHLTIHNNEK 252
+G P C+ C K+F Q + L +H IH+ EK
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEK 37
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 324 NGIHPFTCHFCNKSFTQKTGLERHLTIHNNEK 355
+G P C+ C K+F Q + L +H IH+ EK
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEK 37
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 80 SGERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
SG++ + C C S L +H R+H+GE+P
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 444 TGEKPHECNVCGARFAKKWNMQVHKQKVH 472
+GEK HECN CG F+ K + +H Q++H
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIH-QRIH 33
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 416 TGERRFKCDICGQALTTKPKLNDHMLLHTGE 446
+GE+ +C+ CG+A + K +L H +HTGE
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 108 TGERPHECEVCGKRFAKRSNLNAHKKKVTRHTG 140
+GE+ HEC CGK F+ +S L H++ T +G
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGESG 38
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 80 SGERHIKCEVCSLALLSKSHLKQHMRVHTGE 110
SGE+ +C C A KS L H R+HTGE
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36
>pdb|2WBT|A Chain A, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
pdb|2WBT|B Chain B, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
Length = 129
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 8/111 (7%)
Query: 336 KSFTQKTGLERHLTIHNNEKKHQSGRRQKRNQQHDRQRSESDTTLAEEDN----LFHSTP 391
K + G+ H+T+ ++ HQ QKR + + + L +E + L S
Sbjct: 12 KYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKA 71
Query: 392 I--FQCHLCGRCFNSPTTLTQHKIVHTGERRFKCDICGQALTTKPKLNDHM 440
I F C LC F+S +L QH + E C +C + T+ DH+
Sbjct: 72 ISQFVCPLCLMPFSSSVSLKQH--IRYTEHTKVCPVCKKEFTSTDSALDHV 120
>pdb|2EN8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
171- 203) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 59 CDLCGKGFIHLKSYQIHKMIHSGER 83
CD CGK F ++ + +IH+ +H GE+
Sbjct: 15 CDECGKNFCYISALRIHQRVHMGEK 39
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGER 419
+QC CG+ F+ LTQH I HT E+
Sbjct: 13 YQCSECGKSFSGSYRLTQHWITHTREK 39
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 419 RRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
+ ++C CG++ + +L H + HT EKP
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKP 40
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 108 TGERPHECEVCGKRFAKRSNLNAHKKKVTRHTG 140
+GE P+EC CGK F ++ L +H++ +G
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGESG 38
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
++ FKC+ C + T L H +HTGEKP
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 392 IFQCHLCGRCFNSPTTLTQHKIVHTGER 419
+F+C+ C + F ++LT H+ +HTGE+
Sbjct: 12 LFKCNECKKTFTQSSSLTVHQRIHTGEK 39
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 85 IKCEVCSLALLSKSHLKQHMRVHTGERP 112
KC C S L H R+HTGE+P
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 226 FTCHFCNKSFTQKTGLERHLTIHNNEK 252
F C+ C K+FTQ + L H IH EK
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEK 39
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 329 FTCHFCNKSFTQKTGLERHLTIHNNEK 355
F C+ C K+FTQ + L H IH EK
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEK 39
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 225 PFTCHFCNKSFTQKTGLERHLTIHNNEK 252
P+ C C + F L+RH+ IH EK
Sbjct: 3 PYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 328 PFTCHFCNKSFTQKTGLERHLTIHNNEK 355
P+ C C + F L+RH+ IH EK
Sbjct: 3 PYVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 189 TKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNG 222
+ S +P+VC CG+ + K+ L++H +H G
Sbjct: 2 SSGSSGQKPYVCNECGKAFGLKSQLIIHERIHTG 35
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 292 TKTHSDLRPFVCEICGQGYRTKTHLLVHVGMHNG 325
+ S +P+VC CG+ + K+ L++H +H G
Sbjct: 2 SSGSSGQKPYVCNECGKAFGLKSQLIIHERIHTG 35
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 416 TGERRFKCDICGQALTTKPKLNDHMLLHTGE 446
+G++ + C+ CG+A K +L H +HTGE
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 108 TGERPHECEVCGKRFAKRSNLNAHKKKVTRHTG 140
+G++P+ C CGK F +S L H++ T +G
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGESG 38
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 324 NGIHPFTCHFCNKSFTQKTGLERHLTIHNNEKKHQSG 360
+G P+ C+ C K+F K+ L H IH E SG
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGESGPSSG 42
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 97 KSHLKQHMRVHTGERPHECEVCGKRFAKRSNLNAHKKKV 135
K+ L+ H R+H +RP +C C + SNL+ H KK
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 71 SYQIHKMIHSGERHIKCEVCSLALLSKSHLKQHMRVHTGE 110
+ +IH+ IH +R KC CS S+L +HM+ G+
Sbjct: 24 ALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 433 KPKLNDHMLLHTGEKPHECNVCGARFAKKWNMQVHKQKVHGPDVRGTTE 481
K L H +H ++P +CN C + N+ H +K HG D+ G +
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG-DMSGPSS 69
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 16/34 (47%)
Query: 225 PFTCHFCNKSFTQKTGLERHLTIHNNEKKHQVSG 258
PF C C KSF K L H IH EK SG
Sbjct: 12 PFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSSG 45
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 110 ERPHECEVCGKRFAKRSNLNAHKKKVTRHTGRDEVPS 146
++P EC CGK F + NL H++ HTG PS
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRI---HTGEKSGPS 43
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 196 RPFVCEICGQGYRTKTHLLVHVGMHNG 222
+PF C CG+ +R K +L+ H +H G
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTG 37
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 299 RPFVCEICGQGYRTKTHLLVHVGMHNG 325
+PF C CG+ +R K +L+ H +H G
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTG 37
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 15/32 (46%)
Query: 328 PFTCHFCNKSFTQKTGLERHLTIHNNEKKHQS 359
PF C C KSF K L H IH EK S
Sbjct: 12 PFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGER 419
F+C CG+ F + L H+ +HTGE+
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEK 447
++ F+C CG++ K L H +HTGEK
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 416 TGERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
+G+R ++C CG++ K L H +HTG P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 80 SGERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
SG+R +C+ C + K L H R+HTG P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 392 IFQCHLCGRCFNSPTTLTQHKIVHTG 417
+++C CG+ F +LT H+ +HTG
Sbjct: 10 VYECQECGKSFRQKGSLTLHERIHTG 35
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 108 TGERPHECEVCGKRFAKRSNLNAHKK 133
+G+R +EC+ CGK F ++ +L H++
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHER 31
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 86 KCEVCSLALLSKSHLKQHMRVHTGER 111
+C+ C + HL QH RVHTGER
Sbjct: 14 ECKECRKTFIQIGHLNQHKRVHTGER 39
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
E ++C CG+A + K +L H H GEKP
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGER 419
++CH CG+ F+ L H+ H GE+
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEK 39
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 80 SGERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
SGE+ C C A SKS+L H + H E+P
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 87 CEVCSLALLSKSHLKQHMRVHTGER 111
CEVC+ A + +LK+H R HT E+
Sbjct: 5 CEVCTRAFARQEYLKRHYRSHTNEK 29
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 225 PFTCHFCNKSFTQKTGLERHLTIHNNEK 252
F C C ++F ++ L+RH H NEK
Sbjct: 2 SFVCEVCTRAFARQEYLKRHYRSHTNEK 29
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 328 PFTCHFCNKSFTQKTGLERHLTIHNNEK 355
F C C ++F ++ L+RH H NEK
Sbjct: 2 SFVCEVCTRAFARQEYLKRHYRSHTNEK 29
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 110 ERPHECEVCGKRFAKRSNLNAHKKKVTRHTGRD 142
E+PHEC CGK F+ S L H++ HTG +
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRI---HTGEN 39
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 225 PFTCHFCNKSFTQKTGLERHLTIHNNEK 252
F C C ++F ++ L+RH H NEK
Sbjct: 2 SFVCEVCTRAFARQEALKRHYRSHTNEK 29
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 328 PFTCHFCNKSFTQKTGLERHLTIHNNEK 355
F C C ++F ++ L+RH H NEK
Sbjct: 2 SFVCEVCTRAFARQEALKRHYRSHTNEK 29
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 87 CEVCSLALLSKSHLKQHMRVHTGER 111
CEVC+ A + LK+H R HT E+
Sbjct: 5 CEVCTRAFARQEALKRHYRSHTNEK 29
>pdb|2DMI|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Like Domains Of Human Teashirt Homolog 3
Length = 115
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 7/98 (7%)
Query: 318 VHVGMHNGIHPFTCHFCNKSFTQKTGLERHL--TIHNNEKKHQSGRRQKRNQQHDRQRSE 375
++ + G F C C+ ++ L H+ T H + H++ + R+RS
Sbjct: 9 LYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRS- 67
Query: 376 SDTTLAEEDNLFHSTPIFQCHLCGRCFNSPTTLTQHKI 413
L E + + + +C CG F S L+ H I
Sbjct: 68 ----LLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMI 101
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 110 ERPHECEVCGKRFAKRSNLNAHKKKVTRHTG 140
E+P+EC C K F +SNL H++ T +G
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGESG 40
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 446 EKPHECNVCGARFAKKWNMQVHKQKVH 472
EKP+ECN C F K N+ VH Q+ H
Sbjct: 10 EKPYECNECQKAFNTKSNLMVH-QRTH 35
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGE 110
E+ +C C A +KS+L H R HTGE
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGE 38
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 110 ERPHECEVCGKRFAKRSNLNAHKK 133
E+P+ C CGK F RSNL H+K
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQK 33
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 418 ERRFKCDICGQALTTKPKLNDHMLLHTGEKP 448
E+ + C CG+A T + L H +HT +KP
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
>pdb|2AB3|A Chain A, Solution Structures And Characterization Of Hiv Rre Iib
Rna Targeting Zinc Finger Proteins
Length = 29
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 392 IFQCHL--CGRCFNSPTTLTQHKIVHTG 417
++ CH CGR FN L +HK +HTG
Sbjct: 2 VYVCHFENCGRSFNDRRKLNRHKKIHTG 29
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 110 ERPHECEVCGKRFAKRSNLNAHKKKVTRHTG 140
E+P+EC CGK F + S L H++ + +G
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRTHSGESG 40
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 111 RPHECEVCGKRFAKRSNLNAHKKKVTRHTG 140
RP+ C VCGKRF+ + + H + HTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRV---HTG 28
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 447 KPHECNVCGARFAKKWNMQVH 467
+P+ C+VCG RF+ K M+ H
Sbjct: 2 RPYSCSVCGKRFSLKHQMETH 22
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 80 SGERHIKCEVCSLALLSKSHLKQHMRVHTGER 111
S + KC +C A SKS+LK HM H+ E+
Sbjct: 5 SSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
>pdb|1ZNF|A Chain A, Three-Dimensional Solution Structure Of A Single Zinc
Finger Dna-Binding Domain
Length = 27
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 226 FTCHFCNKSFTQKTGLERHLTIHNN 250
+ C C +SF +K+ L RH +H N
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHKN 26
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 329 FTCHFCNKSFTQKTGLERHLTIHNN 353
+ C C +SF +K+ L RH +H N
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHKN 26
>pdb|3IUF|A Chain A, Crystal Structure Of The C2h2-Type Zinc Finger Domain Of
Human Ubi-D4
Length = 48
Score = 29.3 bits (64), Expect = 5.7, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 110 ERPHECEVCGKRFAKRSNLNAH--KKKVTRHTGRDEVPSIKP 149
++P+ C++CGKR+ R L+ H + G D+ S P
Sbjct: 5 DKPYACDICGKRYKNRPGLSYHYAHSHLAEEEGEDKEDSQPP 46
>pdb|2ELR|A Chain A, Solution Structure Of The 15th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 395 CHLCGRCFNSPTTLTQHKIVHTGE 418
C +CG+ F S TL HK++HT +
Sbjct: 12 CDMCGKKFKSKGTLKSHKLLHTAD 35
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 195 LRPFVCEICGQGYRTKTHLLVHVGMHNGIHP 225
++P+ C C + + K+ L+VH H G+ P
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 298 LRPFVCEICGQGYRTKTHLLVHVGMHNGIHP 328
++P+ C C + + K+ L+VH H G+ P
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 110 ERPHECEVCGKRFAKRSNLNAHKKKVTRHTG 140
E P+EC CGK F+++ L +H+K + +G
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSGQSG 40
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
E+ KC C + S L+ H VH GE+P
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKP 40
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 82 ERHIKCEVCSLALLSKSHLKQHMRVHTGERP 112
E+ CE+C LK H+R+HTG P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,994,762
Number of Sequences: 62578
Number of extensions: 662215
Number of successful extensions: 3771
Number of sequences better than 100.0: 205
Number of HSP's better than 100.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1543
Number of HSP's gapped (non-prelim): 1915
length of query: 514
length of database: 14,973,337
effective HSP length: 103
effective length of query: 411
effective length of database: 8,527,803
effective search space: 3504927033
effective search space used: 3504927033
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)