RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11032
(514 letters)
>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain.
Length = 26
Score = 39.7 bits (93), Expect = 6e-05
Identities = 15/25 (60%), Positives = 22/25 (88%)
Query: 99 HLKQHMRVHTGERPHECEVCGKRFA 123
+L++HMR HTGE+P++C VCGK F+
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFS 25
Score = 32.4 bits (74), Expect = 0.020
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 436 LNDHMLLHTGEKPHECNVCGARFA 459
L HM HTGEKP++C VCG F+
Sbjct: 2 LRRHMRTHTGEKPYKCPVCGKSFS 25
Score = 29.7 bits (67), Expect = 0.18
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 408 LTQHKIVHTGERRFKCDICGQALTT 432
L +H HTGE+ +KC +CG++ ++
Sbjct: 2 LRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 28.1 bits (63), Expect = 0.66
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 212 HLLVHVGMHNGIHPFTCHFCNKSFTQ 237
+L H+ H G P+ C C KSF+
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 28.1 bits (63), Expect = 0.66
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 315 HLLVHVGMHNGIHPFTCHFCNKSFTQ 340
+L H+ H G P+ C C KSF+
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 27.4 bits (61), Expect = 1.4
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 184 ELNKHTKTHSDLRPFVCEICGQGYRT 209
L +H +TH+ +P+ C +CG+ + +
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 27.4 bits (61), Expect = 1.4
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 287 ELNKHTKTHSDLRPFVCEICGQGYRT 312
L +H +TH+ +P+ C +CG+ + +
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
>gnl|CDD|227381 COG5048, COG5048, FOG: Zn-finger [General function prediction
only].
Length = 467
Score = 33.9 bits (77), Expect = 0.19
Identities = 43/191 (22%), Positives = 63/191 (32%), Gaps = 24/191 (12%)
Query: 85 IKCEVCSLALLSKSHLKQHMR--VHTGE--RPHEC--EVCGKRFAKRSNLNAHKKKVTRH 138
IK + C+++ S L +H+R H+GE +P C +CGK F++ L H H
Sbjct: 290 IKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHIL---LH 346
Query: 139 TGRDEVPSIKPLKRKRNISFLTGAREGMPLIHECPTCGKKWRTRSELNKHTKTHSDLRPF 198
T K L S L L K+ K L
Sbjct: 347 TSISPAK-EKLLNSSSKFSPLLNNEPPQSLQQYKD------------LKNDKKSETLSNS 393
Query: 199 VCEICGQGYRTKTHLLVHVGMHNGIHPFTCHFCNKSFTQKTGLERHLTIHNNEKKHQVSG 258
+ H++ H+ + C+KSF + L H IH N S
Sbjct: 394 CIRNFKRDSNLSLHIITHLSF--RPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLCSI 451
Query: 259 RFSFNRAREGM 269
SF R +
Sbjct: 452 LKSFRRDLDLS 462
Score = 33.1 bits (75), Expect = 0.39
Identities = 56/362 (15%), Positives = 95/362 (26%), Gaps = 58/362 (16%)
Query: 85 IKCEVCSLALLSKSHLKQHMRVHTGERPHECEVCGKRFAKRSNLNAHKKKVTRHTGRDEV 144
C C+ + HL +H+R HTGE+P +C G + L + T H ++
Sbjct: 34 DSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHNNPSDL 93
Query: 145 PSI-----KPLKRKRNISFLTGAREGMPLIHECPTCGKKWRTRSELNKHTKTHSDLRPFV 199
S ++S + L+ +R + S+LR
Sbjct: 94 NSKSLPLSNSKASSSSLSSSSSNSNDNNLLSSHSLPPS---SRDPQLPDLLSISNLRNNP 150
Query: 200 CEIC-GQGYRTKTHLLVHVGMHNGIHPFTCHFC-------NKSFTQKTGLERHLTIHNNE 251
T +H + N S + + E +
Sbjct: 151 LPGNNSSSVNTPQSNSLHPPLPANSLSKDPSSNLSLLISSNVSTSIPSSSENSPLSSSYS 210
Query: 252 KKHQVSGRFSFNRAREGMPLIHECPTCGKKWRTRSELNKHTKTHSDLRPFVCEICGQGYR 311
S + + +PL + S +
Sbjct: 211 IPSSSS-DQNLENSSSSLPLTTNSQLS----PKSLLSQSPSSLSSSDSSSSASESPRSSL 265
Query: 312 TK------THLLVHVGMHNGI-HPFTCHFCNKSFTQKTGLERHLTIHNNEKKHQSGRRQK 364
+ G P CN SF++ + L RHL
Sbjct: 266 PTASSQSSSPNESDSSSEKGFSLPIKSKQCNISFSRSSPLTRHL---------------- 309
Query: 365 RNQQHDRQRSESDTTLAEEDNLFHSTPIFQCHLCGRCFNSPTTLTQHKIVHTGERRFKCD 424
RS + + E S P LCG+ F+ L +H ++HT K
Sbjct: 310 --------RSVNHS---GESLKPFSCPY---SLCGKLFSRNDALKRHILLHTSISPAKEK 355
Query: 425 IC 426
+
Sbjct: 356 LL 357
>gnl|CDD|234754 PRK00418, PRK00418, DNA gyrase inhibitor; Reviewed.
Length = 62
Score = 30.0 bits (68), Expect = 0.36
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 12/40 (30%)
Query: 166 MPLIHECPTCGKK--WRTRSELNKHTKTHSDLRPFVCEIC 203
+ CPTCGK W E++ RPF + C
Sbjct: 3 ETITVNCPTCGKPVEW---GEISPF-------RPFCSKRC 32
Score = 30.0 bits (68), Expect = 0.36
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 12/40 (30%)
Query: 269 MPLIHECPTCGKK--WRTRSELNKHTKTHSDLRPFVCEIC 306
+ CPTCGK W E++ RPF + C
Sbjct: 3 ETITVNCPTCGKPVEW---GEISPF-------RPFCSKRC 32
>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M
transition [Transcription / Cell division and chromosome
partitioning].
Length = 423
Score = 33.2 bits (75), Expect = 0.38
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 222 GIHPFTCHF--CNKSFTQKTGLERH-LTIHNNEKKHQVSGRFSFNR-AREGMPLIHECPT 277
P+ C CNK + + GL+ H L H N+K H+ N + + P + C
Sbjct: 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKP--YRCEV 403
Query: 278 CGKKWRTRSELNKHTKTHSDL 298
C K+++ + L H + HS
Sbjct: 404 CDKRYKNLNGLKYH-RKHSHD 423
Score = 32.0 bits (72), Expect = 0.87
Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 13/94 (13%)
Query: 104 MRVHTGERPHECEV--CGKRFAKRSNLNAHKKKVTRHTGRDEVPSIKPLKRKRNISFLTG 161
M +P++C V C K++ ++ L H ++ E PS + + F
Sbjct: 341 MLKVKDGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMN-----IFSAK 395
Query: 162 AREGMPLIHECPTCGKKWRTRSELNKHTKTHSDL 195
+ + C C K+++ + L H + HS
Sbjct: 396 DKP-----YRCEVCDKRYKNLNGLKYH-RKHSHD 423
Score = 30.5 bits (68), Expect = 2.1
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 21/74 (28%)
Query: 81 GERHIKCEV--CSLALLSKSHLKQHMR-------------------VHTGERPHECEVCG 119
+ KC V C+ +++ LK HM ++P+ CEVC
Sbjct: 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCD 405
Query: 120 KRFAKRSNLNAHKK 133
KR+ + L H+K
Sbjct: 406 KRYKNLNGLKYHRK 419
Score = 28.5 bits (63), Expect = 9.4
Identities = 19/105 (18%), Positives = 32/105 (30%), Gaps = 17/105 (16%)
Query: 248 HNNEKKHQVSGRFSFNRAREGMPLIHECPTCGKKWRTRSELNKHTK---THSDLRPFVCE 304
H E+ R ++G P C KK++ ++ L H + L
Sbjct: 329 HGGERNIDTPSRMLK--VKDGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSP 386
Query: 305 ICGQGYRTKTHLLVHVGMHNGIHPFTCHFCNKSFTQKTGLERHLT 349
+ K P+ C C+K + GL+ H
Sbjct: 387 EKMNIFSAKDK------------PYRCEVCDKRYKNLNGLKYHRK 419
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 28.6 bits (64), Expect = 0.49
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 226 FTCHFCNKSFTQKTGLERHLTIH 248
+ C C K F K+ L H+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 28.6 bits (64), Expect = 0.49
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 329 FTCHFCNKSFTQKTGLERHLTIH 351
+ C C K F K+ L H+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 27.4 bits (61), Expect = 1.2
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVH 415
++C CG+ F S + L +H H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 25.9 bits (57), Expect = 4.8
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 421 FKCDICGQALTTKPKLNDHMLLH 443
++C CG+ +K L +HM H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 25.5 bits (56), Expect = 7.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 86 KCEVCSLALLSKSHLKQHMRVH 107
+C C SKS L++HMR H
Sbjct: 2 RCPECGKVFKSKSALREHMRTH 23
Score = 25.1 bits (55), Expect = 7.8
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 198 FVCEICGQGYRTKTHLLVHVGMH 220
+ C CG+ +++K+ L H+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 25.1 bits (55), Expect = 7.8
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 301 FVCEICGQGYRTKTHLLVHVGMH 323
+ C CG+ +++K+ L H+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 25.1 bits (55), Expect = 8.5
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 113 HECEVCGKRFAKRSNLNAHKKK 134
+ C CGK F +S L H +
Sbjct: 1 YRCPECGKVFKSKSALREHMRT 22
Score = 25.1 bits (55), Expect = 9.5
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 170 HECPTCGKKWRTRSELNKHTKTH 192
+ CP CGK ++++S L +H +TH
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 25.1 bits (55), Expect = 9.5
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 273 HECPTCGKKWRTRSELNKHTKTH 295
+ CP CGK ++++S L +H +TH
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
>gnl|CDD|206083 pfam13912, zf-C2H2_6, C2H2-type zinc finger.
Length = 27
Score = 28.3 bits (64), Expect = 0.56
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 113 HECEVCGKRFAKRSNLNAHKK 133
H C VCGK F+ L HKK
Sbjct: 2 HTCGVCGKTFSSLQALGGHKK 22
>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type. The C2H2 zinc finger
is the classical zinc finger domain. The two conserved
cysteines and histidines co-ordinate a zinc ion. The
following pattern describes the zinc finger.
#-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can
be any amino acid, and numbers in brackets indicate the
number of residues. The positions marked # are those
that are important for the stable fold of the zinc
finger. The final position can be either his or cys. The
C2H2 zinc finger is composed of two short beta strands
followed by an alpha helix. The amino terminal part of
the helix binds the major groove in DNA binding zinc
fingers. The accepted consensus binding sequence for Sp1
is usually defined by the asymmetric hexanucleotide core
GGGCGG but this sequence does not include, among others,
the GAG (=CTC) repeat that constitutes a high-affinity
site for Sp1 binding to the wt1 promoter.
Length = 22
Score = 27.7 bits (62), Expect = 0.88
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 227 TCHFCNKSFTQKTGLERHLTIH 248
C C KSF++K+ L+RHL H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 27.7 bits (62), Expect = 0.88
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 330 TCHFCNKSFTQKTGLERHLTIH 351
C C KSF++K+ L+RHL H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 26.9 bits (60), Expect = 1.7
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 394 QCHLCGRCFNSPTTLTQHKIVH 415
+C CG+ F+ + L +H H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 26.9 bits (60), Expect = 2.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 114 ECEVCGKRFAKRSNLNAHKKK 134
+C CGK F+++SNL H +
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRT 21
>gnl|CDD|214384 CHL00174, accD, acetyl-CoA carboxylase beta subunit; Reviewed.
Length = 296
Score = 31.4 bits (72), Expect = 1.0
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 9/35 (25%)
Query: 85 IKCEVCSLALLSKSHLKQHMRVHTGERPHECEVCG 119
++CE C L K LK M + CE CG
Sbjct: 39 VQCENCYG-LNYKKFLKSKMNI--------CEQCG 64
>gnl|CDD|217778 pfam03884, DUF329, Domain of unknown function (DUF329). The
function of this short domain is unknown it contains
four conserved cysteines and may therefore be involved
in zinc binding.
Length = 57
Score = 28.1 bits (63), Expect = 1.6
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 8/36 (22%)
Query: 168 LIHECPTCGKKWRTRSELNKHTKTHSDLRPFVCEIC 203
+ +CPTCGK SE N RPF E C
Sbjct: 1 MTVKCPTCGKP-VVWSEENPF-------RPFCSERC 28
Score = 28.1 bits (63), Expect = 1.6
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 8/36 (22%)
Query: 271 LIHECPTCGKKWRTRSELNKHTKTHSDLRPFVCEIC 306
+ +CPTCGK SE N RPF E C
Sbjct: 1 MTVKCPTCGKP-VVWSEENPF-------RPFCSERC 28
>gnl|CDD|223361 COG0284, PyrF, Orotidine-5'-phosphate decarboxylase [Nucleotide
transport and metabolism].
Length = 240
Score = 30.3 bits (69), Expect = 1.8
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 11 VKIYL-LVIDEKVLIVRKLVDNGHKIFL 37
VK+ LV I+ +L G K+FL
Sbjct: 40 VKVGKPLVAFFGADILEELKARGKKVFL 67
>gnl|CDD|238464 cd00924, Cyt_c_Oxidase_Vb, Cytochrome c oxidase subunit Vb.
Cytochrome c oxidase (CcO), the terminal oxidase in the
respiratory chains of eukaryotes and most bacteria, is a
multi-chain transmembrane protein located in the inner
membrane of mitochondria and the cell membrane of
prokaryotes. It catalyzes the reduction of O2 and
simultaneously pumps protons across the membrane. The
number of subunits varies from three to five in bacteria
and up to 13 in mammalian mitochondria. Subunits I, II,
and III of mammalian CcO are encoded within the
mitochondrial genome and the remaining 10 subunits are
encoded within the nuclear genome. Found only in
eukaryotes, subunit Vb is one of three mammalian
subunits that lacks a transmembrane region. Subunit Vb
is located on the matrix side of the membrane and binds
the regulatory subunit of protein kinase A. The
abnormally extended conformation is stable only in the
CcO assembly.
Length = 97
Score = 28.8 bits (65), Expect = 2.0
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 6/44 (13%)
Query: 79 HSGERHIKCEVCSLALLSKSHLKQHMRVHTGERPHECEVCGKRF 122
+R + C C SH M + G+ P C CG F
Sbjct: 52 AFDKRIVGCI-CEPD----SHDVIWMWLEKGK-PKRCPECGHVF 89
>gnl|CDD|201594 pfam01096, TFIIS_C, Transcription factor S-II (TFIIS).
Length = 39
Score = 27.2 bits (61), Expect = 2.2
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 264 RAREGMPLIHECPTCGKKWR 283
A E M L + C CG +WR
Sbjct: 20 SADEPMTLFYVCTKCGHRWR 39
Score = 26.4 bits (59), Expect = 3.9
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
Query: 153 KRNISFLT----GAREGMPLIHECPTCGKKWR 180
R F A E M L + C CG +WR
Sbjct: 8 HREAVFFQLQTRSADEPMTLFYVCTKCGHRWR 39
>gnl|CDD|177301 PHA00733, PHA00733, hypothetical protein.
Length = 128
Score = 29.1 bits (65), Expect = 2.2
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 87 CEVCSLALLSKSHLKQHMRVHTGERPHECEVCGKRFAKRSNLNAH 131
C +C + S LKQH+R E C VCGK F + H
Sbjct: 76 CPLCLMPFSSSVSLKQHIRY--TEHSKVCPVCGKEFRNTDSTLDH 118
Score = 28.3 bits (63), Expect = 5.2
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 393 FQCHLCGRCFNSPTTLTQHKIVHTGERRFKCDICGQALTTKPKLNDHM 440
+ C LC F+S +L QH + E C +CG+ DH+
Sbjct: 74 YVCPLCLMPFSSSVSLKQH--IRYTEHSKVCPVCGKEFRNTDSTLDHV 119
>gnl|CDD|222704 pfam14353, CpXC, CpXC protein. This presumed domain is
functionally uncharacterized. This domain is found in
bacteria and archaea, and is typically between 122 and
134 amino acids in length. It contains four conserved
cysteines forming two CpXC motifs.
Length = 128
Score = 28.9 bits (65), Expect = 2.6
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 9/55 (16%)
Query: 171 ECPTCGKKWRTRSELNKHTKTHSDLRP---------FVCEICGQGYRTKTHLLVH 216
CP+CG ++ + + +LR F C CG +R L H
Sbjct: 3 TCPSCGHEFEAEVWTSVNADEDPELREAILDGTLFTFTCPSCGHEFRLDYPFLYH 57
Score = 28.9 bits (65), Expect = 2.6
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 9/55 (16%)
Query: 274 ECPTCGKKWRTRSELNKHTKTHSDLRP---------FVCEICGQGYRTKTHLLVH 319
CP+CG ++ + + +LR F C CG +R L H
Sbjct: 3 TCPSCGHEFEAEVWTSVNADEDPELREAILDGTLFTFTCPSCGHEFRLDYPFLYH 57
>gnl|CDD|206065 pfam13894, zf-C2H2_4, C2H2-type zinc finger. This family contains
a number of divergent C2H2 type zinc fingers.
Length = 24
Score = 25.7 bits (56), Expect = 5.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 226 FTCHFCNKSFTQKTGLERHLTIH 248
F C C KSF+ K L+RHL H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 25.7 bits (56), Expect = 5.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 329 FTCHFCNKSFTQKTGLERHLTIH 351
F C C KSF+ K L+RHL H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
>gnl|CDD|218591 pfam05443, ROS_MUCR, ROS/MUCR transcriptional regulator protein.
This family consists of several ROS/MUCR transcriptional
regulator proteins. The ros chromosomal gene is present
in octopine and nopaline strains of Agrobacterium
tumefaciens as well as in Rhizobium meliloti. This gene
encodes a 15.5-kDa protein that specifically represses
the virC and virD operons in the virulence region of the
Ti plasmid and is necessary for succinoglycan
production. Sinorhizobium meliloti can produce two types
of acidic exopolysaccharides, succinoglycan and
galactoglucan, that are interchangeable for infection of
alfalfa nodules. MucR from Sinorhizobium meliloti acts
as a transcriptional repressor that blocks the
expression of the exp genes responsible for
galactoglucan production therefore allowing the
exclusive production of succinoglycan.
Length = 130
Score = 27.9 bits (63), Expect = 5.7
Identities = 8/22 (36%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 199 VCEICGQGYRT-KTHLLVHVGM 219
+C G+ ++T K HL H G+
Sbjct: 72 ICLEDGKKFKTLKRHLRTHHGL 93
Score = 27.9 bits (63), Expect = 5.7
Identities = 8/22 (36%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 302 VCEICGQGYRT-KTHLLVHVGM 322
+C G+ ++T K HL H G+
Sbjct: 72 ICLEDGKKFKTLKRHLRTHHGL 93
>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine
Kinases, Lymphocyte-specific kinase and Blk. Protein
Tyrosine Kinase (PTK) family; Lck and Blk kinases;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Lck (lymphocyte-specific
kinase) and Blk are members of the Src subfamily of
proteins, which are cytoplasmic (or non-receptor) tyr
kinases. Src kinases contain an N-terminal SH4 domain
with a myristoylation site, followed by SH3 and SH2
domains, a tyr kinase domain, and a regulatory
C-terminal region containing a conserved tyr. They are
activated by autophosphorylation at the tyr kinase
domain, but are negatively regulated by phosphorylation
at the C-terminal tyr by Csk (C-terminal Src Kinase).
Src proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Lck is expressed in T-cells and natural
killer (NK) cells. It plays a critical role in T-cell
maturation, activation, and T-cell receptor (TCR)
signaling. Lck phosphorylates ITAM (immunoreceptor tyr
activation motif) sequences on several subunits of TCRs,
leading to the activation of different second messenger
cascades. Phosphorylated ITAMs serve as binding sites
for other signaling factor such as Syk and ZAP-70,
leading to their activation and propagation of
downstream events. In addition, Lck regulates
drug-induced apoptosis by interfering with the
mitochondrial death pathway. The apototic role of Lck is
independent of its primary function in T-cell signaling.
Blk is expressed specifically in B-cells. It is involved
in pre-BCR (B-cell receptor) signaling.
Length = 260
Score = 28.7 bits (64), Expect = 7.0
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 6 KNNNLVKIYLLVIDEKVLIVRKLVDNGHKIFLCNTEPG--MPDSLLINEIAKYTRCDLCG 63
++ LV++Y +V E + I+ + ++NG + T G + + LI+ A+ G
Sbjct: 59 QHPRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAE----G 114
Query: 64 KGFIHLKSYQIHK 76
FI K+Y IH+
Sbjct: 115 MAFIERKNY-IHR 126
>gnl|CDD|224510 COG1594, RPB9, DNA-directed RNA polymerase, subunit M/Transcription
elongation factor TFIIS [Transcription].
Length = 113
Score = 27.4 bits (61), Expect = 7.5
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 264 RAREGMPLIHECPTCGKKWRT 284
A E ++C CG +WR
Sbjct: 92 SADEPETRFYKCTRCGYRWRE 112
>gnl|CDD|226202 COG3677, COG3677, Transposase and inactivated derivatives [DNA
replication, recombination, and repair].
Length = 129
Score = 27.4 bits (61), Expect = 8.9
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 5/42 (11%)
Query: 199 VCEICGQGYRTKTHLLVHVGMHNGIHPFTCHFCNKSFTQKTG 240
C C + G+ G + C C +FT +TG
Sbjct: 32 NCPRCKSSNV-----VKIGGIRRGHQRYKCKSCGSTFTVETG 68
Score = 27.4 bits (61), Expect = 8.9
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 5/42 (11%)
Query: 302 VCEICGQGYRTKTHLLVHVGMHNGIHPFTCHFCNKSFTQKTG 343
C C + G+ G + C C +FT +TG
Sbjct: 32 NCPRCKSSNV-----VKIGGIRRGHQRYKCKSCGSTFTVETG 68
>gnl|CDD|238250 cd00443, ADA_AMPD, Adenosine/AMP deaminase. Adenosine deaminases
(ADAs) are present in pro- and eukaryotic organisms and
catalyze the zinc dependent irreversible deamination of
adenosine nucleosides to inosine nucleosides and
ammonia. The eukaryotic AMP deaminase catalyzes a
similar reaction leading to the hydrolytic removal of an
amino group at the 6 position of the adenine nucleotide
ring, a branch point in the adenylate catabolic pathway.
Length = 305
Score = 28.5 bits (64), Expect = 9.2
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 6/44 (13%)
Query: 25 VRKLVDNGHKIFLCNTEPGMPDSLLINE---IAKY---TRCDLC 62
+ G + L +PG+ + L E AK T DLC
Sbjct: 238 FMRFFKAGLPVSLSTDDPGIFGTSLSEEYSLAAKTFGLTFEDLC 281
>gnl|CDD|204841 pfam12171, zf-C2H2_jaz, Zinc-finger double-stranded RNA-binding.
This domain family is found in archaea and eukaryotes,
and is approximately 30 amino acids in length. The
mammalian members of this group occur multiple times
along the protein, joined by flexible linkers, and are
referred to as JAZ - dsRNA-binding ZF protein -
zinc-fingers. The JAZ proteins are expressed in all
tissues tested and localise in the nucleus, particularly
the nucleolus. JAZ preferentially binds to
double-stranded (ds) RNA or RNA/DNA hybrids rather than
DNA. In addition to binding double-stranded RNA, these
zinc-fingers are required for nucleolar localisation.
Length = 27
Score = 25.2 bits (56), Expect = 9.3
Identities = 7/22 (31%), Positives = 8/22 (36%)
Query: 112 PHECEVCGKRFAKRSNLNAHKK 133
C C K F + L H K
Sbjct: 1 QFYCVACDKYFKSENALENHLK 22
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.136 0.436
Gapped
Lambda K H
0.267 0.0655 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,750,579
Number of extensions: 2252284
Number of successful extensions: 2447
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2423
Number of HSP's successfully gapped: 121
Length of query: 514
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 413
Effective length of database: 6,457,848
Effective search space: 2667091224
Effective search space used: 2667091224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (27.4 bits)