BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11033
(251 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FUG|1 Chain 1, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|A Chain A, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|J Chain J, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|S Chain S, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|3I9V|1 Chain 1, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3I9V|A Chain A, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3IAM|1 Chain 1, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAM|A Chain A, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAS|1 Chain 1, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|A Chain A, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|J Chain J, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|S Chain S, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3M9S|1 Chain 1, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|3M9S|A Chain A, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|2YBB|1 Chain 1, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|4HEA|1 Chain 1, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
pdb|4HEA|B Chain B, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
Length = 438
Score = 179 bits (454), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 93/185 (50%), Positives = 120/185 (64%), Gaps = 3/185 (1%)
Query: 65 VAGRAMGAKAAYIYIRGEFYNEASNMQVAISEAYQAGLIGKNACGSGYDFDVFMHRGAGA 124
+AG A+ A YIY+RGE+ A ++ AI EA G +GKN G+ + FD+ +HRGAGA
Sbjct: 120 LAGYAIRATVGYIYVRGEYRRAADRLEQAIKEARARGYLGKNLFGTDFSFDLHVHRGAGA 179
Query: 125 YICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPEICRRGGAWFA 184
YICGEETAL+ S+EG + PRLKPPFPA G++G PTT++NVET+A I RG WFA
Sbjct: 180 YICGEETALMNSLEGLRANPRLKPPFPAQSGLWGKPTTINNVETLASVVPIMERGADWFA 239
Query: 185 SLGRPRNSGTKLFNISGHVNTPCTVEEEMSIPLKELIQRHAGDVIGGWDNLLAIIPGGSS 244
+G ++ G KL+ ISG V P E M +ELI AG G + + AIIPGGSS
Sbjct: 240 QMGTEQSKGMKLYQISGPVKRPGVYELPMGTTFRELIYEWAG---GPLEPIQAIIPGGSS 296
Query: 245 TPLIP 249
TP +P
Sbjct: 297 TPPLP 301
>pdb|1LM7|A Chain A, Structures Of Two Intermediate Filament-Binding Fragments
Of Desmoplakin Reveal A Unique Repeat Motif Structure
pdb|1LM7|B Chain B, Structures Of Two Intermediate Filament-Binding Fragments
Of Desmoplakin Reveal A Unique Repeat Motif Structure
Length = 248
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 13/73 (17%)
Query: 32 FYNEASNMQVAISETLKIWSIHPPWYITVWTHGVAGRAMGAKAAYIYIRGEFYNEASNMQ 91
YNE + ++ I E +KI + P G A + A+AA +I + SN++
Sbjct: 55 IYNETTKQKLGIYEAMKIGLVRP---------GTALELLEAQAATGFI----VDPVSNLR 101
Query: 92 VAISEAYQAGLIG 104
+ + EAY+ GL+G
Sbjct: 102 LPVEEAYKRGLVG 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,995,583
Number of Sequences: 62578
Number of extensions: 334832
Number of successful extensions: 980
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 971
Number of HSP's gapped (non-prelim): 7
length of query: 251
length of database: 14,973,337
effective HSP length: 96
effective length of query: 155
effective length of database: 8,965,849
effective search space: 1389706595
effective search space used: 1389706595
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)