BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11033
(251 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P25708|NDUV1_BOVIN NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
OS=Bos taurus GN=NDUFV1 PE=1 SV=2
Length = 464
Score = 354 bits (908), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 179/250 (71%), Positives = 190/250 (76%), Gaps = 51/250 (20%)
Query: 1 MRHDPHKLVEGCLVAGRAMGAKAAYIYIRGEFYNEASNMQVAISETLKIWSIHPPWYITV 60
+RHDPHKLVEGCL
Sbjct: 131 IRHDPHKLVEGCL----------------------------------------------- 143
Query: 61 WTHGVAGRAMGAKAAYIYIRGEFYNEASNMQVAISEAYQAGLIGKNACGSGYDFDVFMHR 120
V GRAMGA+AAYIYIRGEFYNEASN+QVAI EAY+AGLIGKNACGSGYDFDVF+ R
Sbjct: 144 ----VGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVR 199
Query: 121 GAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPEICRRGG 180
GAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTV+NVETVAV+P ICRRGG
Sbjct: 200 GAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGG 259
Query: 181 AWFASLGRPRNSGTKLFNISGHVNTPCTVEEEMSIPLKELIQRHAGDVIGGWDNLLAIIP 240
AWFAS GR RNSGTKLFNISGHVN PCTVEEEMS+PLKELI++HAG V GGWDNLLA+IP
Sbjct: 260 AWFASFGRERNSGTKLFNISGHVNNPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIP 319
Query: 241 GGSSTPLIPK 250
GGSSTPLIPK
Sbjct: 320 GGSSTPLIPK 329
>sp|Q0MQI6|NDUV1_PANTR NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
OS=Pan troglodytes GN=NDUFV1 PE=2 SV=1
Length = 464
Score = 350 bits (899), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 177/250 (70%), Positives = 188/250 (75%), Gaps = 51/250 (20%)
Query: 1 MRHDPHKLVEGCLVAGRAMGAKAAYIYIRGEFYNEASNMQVAISETLKIWSIHPPWYITV 60
+RHDPHKLVEGCL
Sbjct: 131 LRHDPHKLVEGCL----------------------------------------------- 143
Query: 61 WTHGVAGRAMGAKAAYIYIRGEFYNEASNMQVAISEAYQAGLIGKNACGSGYDFDVFMHR 120
V GRAMGA+AAYIYIRGEFYNEASN+QVAI EAY+AGLIGKNACGSGYDFDVF+ R
Sbjct: 144 ----VGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVR 199
Query: 121 GAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPEICRRGG 180
GAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTV+NVETVAV+P ICRRGG
Sbjct: 200 GAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGG 259
Query: 181 AWFASLGRPRNSGTKLFNISGHVNTPCTVEEEMSIPLKELIQRHAGDVIGGWDNLLAIIP 240
WFA GR RNSGTKLFNISGHVN PCTVEEEMS+PLKELI++HAG V GGWDNLLA+IP
Sbjct: 260 TWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIP 319
Query: 241 GGSSTPLIPK 250
GGSSTPLIPK
Sbjct: 320 GGSSTPLIPK 329
>sp|Q8HXQ9|NDUV1_MACFA NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
OS=Macaca fascicularis GN=NDUFV1 PE=2 SV=1
Length = 464
Score = 350 bits (899), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 177/250 (70%), Positives = 188/250 (75%), Gaps = 51/250 (20%)
Query: 1 MRHDPHKLVEGCLVAGRAMGAKAAYIYIRGEFYNEASNMQVAISETLKIWSIHPPWYITV 60
+RHDPHKLVEGCL
Sbjct: 131 IRHDPHKLVEGCL----------------------------------------------- 143
Query: 61 WTHGVAGRAMGAKAAYIYIRGEFYNEASNMQVAISEAYQAGLIGKNACGSGYDFDVFMHR 120
V GRAMGA+AAYIYIRGEFYNEASN+QVAI EAY+AGLIGKNACGSGYDFDVF+ R
Sbjct: 144 ----VGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVR 199
Query: 121 GAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPEICRRGG 180
GAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTV+NVETVAV+P ICRRGG
Sbjct: 200 GAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGG 259
Query: 181 AWFASLGRPRNSGTKLFNISGHVNTPCTVEEEMSIPLKELIQRHAGDVIGGWDNLLAIIP 240
WFA GR RNSGTKLFNISGHVN PCTVEEEMS+PLKELI++HAG V GGWDNLLA+IP
Sbjct: 260 TWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIP 319
Query: 241 GGSSTPLIPK 250
GGSSTPLIPK
Sbjct: 320 GGSSTPLIPK 329
>sp|Q0MQI4|NDUV1_PONPY NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
OS=Pongo pygmaeus GN=NDUFV1 PE=2 SV=1
Length = 464
Score = 350 bits (898), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 177/250 (70%), Positives = 188/250 (75%), Gaps = 51/250 (20%)
Query: 1 MRHDPHKLVEGCLVAGRAMGAKAAYIYIRGEFYNEASNMQVAISETLKIWSIHPPWYITV 60
+RHDPHKLVEGCL
Sbjct: 131 IRHDPHKLVEGCL----------------------------------------------- 143
Query: 61 WTHGVAGRAMGAKAAYIYIRGEFYNEASNMQVAISEAYQAGLIGKNACGSGYDFDVFMHR 120
V GRAMGA+AAYIYIRGEFYNEASN+QVAI EAY+AGLIGKNACGSGYDFDVF+ R
Sbjct: 144 ----VGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVR 199
Query: 121 GAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPEICRRGG 180
GAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTV+NVETVAV+P ICRRGG
Sbjct: 200 GAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGG 259
Query: 181 AWFASLGRPRNSGTKLFNISGHVNTPCTVEEEMSIPLKELIQRHAGDVIGGWDNLLAIIP 240
WFA GR RNSGTKLFNISGHVN PCTVEEEMS+PLKELI++HAG V GGWDNLLA+IP
Sbjct: 260 TWFAGFGRERNSGTKLFNISGHVNYPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIP 319
Query: 241 GGSSTPLIPK 250
GGSSTPLIPK
Sbjct: 320 GGSSTPLIPK 329
>sp|Q91YT0|NDUV1_MOUSE NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
OS=Mus musculus GN=Ndufv1 PE=1 SV=1
Length = 464
Score = 350 bits (897), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 177/250 (70%), Positives = 187/250 (74%), Gaps = 51/250 (20%)
Query: 1 MRHDPHKLVEGCLVAGRAMGAKAAYIYIRGEFYNEASNMQVAISETLKIWSIHPPWYITV 60
MRHDPHKLVEGCL
Sbjct: 131 MRHDPHKLVEGCL----------------------------------------------- 143
Query: 61 WTHGVAGRAMGAKAAYIYIRGEFYNEASNMQVAISEAYQAGLIGKNACGSGYDFDVFMHR 120
V GRAMGA+AAYIYIRGEFYNEASN+QVAI EAY+AGLIGKNACGS YDFDVF+ R
Sbjct: 144 ----VGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSDYDFDVFVVR 199
Query: 121 GAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPEICRRGG 180
GAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTV+NVETVAV+P ICRRGG
Sbjct: 200 GAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGG 259
Query: 181 AWFASLGRPRNSGTKLFNISGHVNTPCTVEEEMSIPLKELIQRHAGDVIGGWDNLLAIIP 240
WFA GR RNSGTKLFNISGHVN PCTVEEEMS+PLKELI++HAG V GGWDNLLA+IP
Sbjct: 260 TWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIP 319
Query: 241 GGSSTPLIPK 250
GGSSTPLIPK
Sbjct: 320 GGSSTPLIPK 329
>sp|P49821|NDUV1_HUMAN NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
OS=Homo sapiens GN=NDUFV1 PE=1 SV=4
Length = 464
Score = 349 bits (896), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 176/250 (70%), Positives = 188/250 (75%), Gaps = 51/250 (20%)
Query: 1 MRHDPHKLVEGCLVAGRAMGAKAAYIYIRGEFYNEASNMQVAISETLKIWSIHPPWYITV 60
+RHDPHKL+EGCL
Sbjct: 131 LRHDPHKLLEGCL----------------------------------------------- 143
Query: 61 WTHGVAGRAMGAKAAYIYIRGEFYNEASNMQVAISEAYQAGLIGKNACGSGYDFDVFMHR 120
V GRAMGA+AAYIYIRGEFYNEASN+QVAI EAY+AGLIGKNACGSGYDFDVF+ R
Sbjct: 144 ----VGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVR 199
Query: 121 GAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPEICRRGG 180
GAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTV+NVETVAV+P ICRRGG
Sbjct: 200 GAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGG 259
Query: 181 AWFASLGRPRNSGTKLFNISGHVNTPCTVEEEMSIPLKELIQRHAGDVIGGWDNLLAIIP 240
WFA GR RNSGTKLFNISGHVN PCTVEEEMS+PLKELI++HAG V GGWDNLLA+IP
Sbjct: 260 TWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIP 319
Query: 241 GGSSTPLIPK 250
GGSSTPLIPK
Sbjct: 320 GGSSTPLIPK 329
>sp|Q0MQI5|NDUV1_GORGO NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
OS=Gorilla gorilla gorilla GN=NDUFV1 PE=2 SV=1
Length = 464
Score = 348 bits (892), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 175/250 (70%), Positives = 188/250 (75%), Gaps = 51/250 (20%)
Query: 1 MRHDPHKLVEGCLVAGRAMGAKAAYIYIRGEFYNEASNMQVAISETLKIWSIHPPWYITV 60
+RHDPHKLVEGCL
Sbjct: 131 LRHDPHKLVEGCL----------------------------------------------- 143
Query: 61 WTHGVAGRAMGAKAAYIYIRGEFYNEASNMQVAISEAYQAGLIGKNACGSGYDFDVFMHR 120
V GRAMGA+AAYIYIRGEFYNEASN+QVAI EAY+AGLIGKNACGSGYDFDVF+ R
Sbjct: 144 ----VGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVR 199
Query: 121 GAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPEICRRGG 180
GAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTV+NVETVAV+P ICRRGG
Sbjct: 200 GAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGG 259
Query: 181 AWFASLGRPRNSGTKLFNISGHVNTPCTVEEEMSIPLKELIQRHAGDVIGGWDNLLAIIP 240
WF+ GR RNSGTKLFNISGHVN PCTVEEEMS+PLKELI++HAG V GGW+NLLA+IP
Sbjct: 260 TWFSGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWENLLAVIP 319
Query: 241 GGSSTPLIPK 250
GGSSTPLIPK
Sbjct: 320 GGSSTPLIPK 329
>sp|P24917|NDUV1_NEUCR NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=nuo-51 PE=2 SV=2
Length = 493
Score = 315 bits (807), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 159/250 (63%), Positives = 176/250 (70%), Gaps = 51/250 (20%)
Query: 1 MRHDPHKLVEGCLVAGRAMGAKAAYIYIRGEFYNEASNMQVAISETLKIWSIHPPWYITV 60
MR DPHKLVEGCL
Sbjct: 143 MRKDPHKLVEGCL----------------------------------------------- 155
Query: 61 WTHGVAGRAMGAKAAYIYIRGEFYNEASNMQVAISEAYQAGLIGKNACGSGYDFDVFMHR 120
VAGRAM A AAYIYIRGEF EA+ +Q AI+EAY GLIGKNACGSGYDFDV++HR
Sbjct: 156 ----VAGRAMNATAAYIYIRGEFIQEAAILQNAINEAYADGLIGKNACGSGYDFDVYLHR 211
Query: 121 GAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPEICRRGG 180
GAGAY+CGEET+LIES+EGK GKPRLKPPFPA VG+FGCP+TV+NVETVAVAP ICRRGG
Sbjct: 212 GAGAYVCGEETSLIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETVAVAPTICRRGG 271
Query: 181 AWFASLGRPRNSGTKLFNISGHVNTPCTVEEEMSIPLKELIQRHAGDVIGGWDNLLAIIP 240
WFA GR RN GTKLF ISGHVN PCTVEEEMSIP++ELI +H G V GGWDNLLA+IP
Sbjct: 272 NWFAGFGRERNQGTKLFCISGHVNNPCTVEEEMSIPMRELIDKHCGGVRGGWDNLLAVIP 331
Query: 241 GGSSTPLIPK 250
GGSSTP++PK
Sbjct: 332 GGSSTPILPK 341
>sp|Q54I90|NDUV1_DICDI NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
OS=Dictyostelium discoideum GN=ndufv1 PE=2 SV=1
Length = 479
Score = 311 bits (797), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 157/250 (62%), Positives = 177/250 (70%), Gaps = 51/250 (20%)
Query: 1 MRHDPHKLVEGCLVAGRAMGAKAAYIYIRGEFYNEASNMQVAISETLKIWSIHPPWYITV 60
MRHDPHKL+EGCL+
Sbjct: 148 MRHDPHKLIEGCLL---------------------------------------------- 161
Query: 61 WTHGVAGRAMGAKAAYIYIRGEFYNEASNMQVAISEAYQAGLIGKNACGSGYDFDVFMHR 120
AG AM A AAYIYIRGEF+ EA ++ AI EAY+AGLIG+NACG+GY FDV++HR
Sbjct: 162 -----AGFAMRACAAYIYIRGEFHYEAKVLEQAIDEAYKAGLIGENACGTGYKFDVYVHR 216
Query: 121 GAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPEICRRGG 180
GAGAYICGEETALIESIEGKQGKPRLKPPFPA G++GCPTTV+NVETVAVAP I RRGG
Sbjct: 217 GAGAYICGEETALIESIEGKQGKPRLKPPFPAMAGLYGCPTTVTNVETVAVAPTILRRGG 276
Query: 181 AWFASLGRPRNSGTKLFNISGHVNTPCTVEEEMSIPLKELIQRHAGDVIGGWDNLLAIIP 240
AWFAS GRP+N+GTKLF ISGHVN PCTVEEEMSIPL+ELI +H G VIGGWDNL +IP
Sbjct: 277 AWFASFGRPKNAGTKLFCISGHVNNPCTVEEEMSIPLRELIDKHCGGVIGGWDNLKGVIP 336
Query: 241 GGSSTPLIPK 250
GGSS P++PK
Sbjct: 337 GGSSVPVLPK 346
>sp|Q92406|NDUV1_ASPNG NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
OS=Aspergillus niger GN=NUO51 PE=3 SV=1
Length = 496
Score = 306 bits (784), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 142/186 (76%), Positives = 164/186 (88%)
Query: 65 VAGRAMGAKAAYIYIRGEFYNEASNMQVAISEAYQAGLIGKNACGSGYDFDVFMHRGAGA 124
V GRAM A AAY+YIRGEFY EA+ +Q AI+EAY+AGLIGKNACG+GYDFDV++HRG GA
Sbjct: 158 VVGRAMNANAAYMYIRGEFYQEATVLQRAINEAYEAGLIGKNACGTGYDFDVYIHRGMGA 217
Query: 125 YICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPEICRRGGAWFA 184
Y+CGEET+LIESIEGK GKPRLKPPFPA VG+FGCP+TV+NVETVAV P I RRG +WF+
Sbjct: 218 YVCGEETSLIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVTPTIMRRGASWFS 277
Query: 185 SLGRPRNSGTKLFNISGHVNTPCTVEEEMSIPLKELIQRHAGDVIGGWDNLLAIIPGGSS 244
S GR RN+GTKLF ISGHVN PCTVEEEMSI L+++I RH G V GGWDNLLA+IPGGSS
Sbjct: 278 SFGRERNAGTKLFCISGHVNNPCTVEEEMSISLRDVIDRHCGGVRGGWDNLLAVIPGGSS 337
Query: 245 TPLIPK 250
TP++PK
Sbjct: 338 TPVLPK 343
>sp|Q9FNN5|NDUV1_ARATH NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
OS=Arabidopsis thaliana GN=At5g08530 PE=2 SV=1
Length = 486
Score = 303 bits (776), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 154/250 (61%), Positives = 173/250 (69%), Gaps = 51/250 (20%)
Query: 1 MRHDPHKLVEGCLVAGRAMGAKAAYIYIRGEFYNEASNMQVAISETLKIWSIHPPWYITV 60
MRHDPHKL+EGCL+
Sbjct: 154 MRHDPHKLLEGCLI---------------------------------------------- 167
Query: 61 WTHGVAGRAMGAKAAYIYIRGEFYNEASNMQVAISEAYQAGLIGKNACGSGYDFDVFMHR 120
AG M A AAYIYIRGE+ NE N++ A EAY AGL+GKNACGSGYDF+V++H
Sbjct: 168 -----AGVGMRASAAYIYIRGEYVNERLNLEKARREAYAAGLLGKNACGSGYDFEVYIHF 222
Query: 121 GAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPEICRRGG 180
GAGAYICGEETAL+ES+EGKQGKPRLKPPFPA+ G++GCPTTV+NVETVAV+P I RRG
Sbjct: 223 GAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGP 282
Query: 181 AWFASLGRPRNSGTKLFNISGHVNTPCTVEEEMSIPLKELIQRHAGDVIGGWDNLLAIIP 240
WF+S GR N+GTKLF ISGHVN PCTVEEEMSIPLKELI+RH G V GGWDNLLAIIP
Sbjct: 283 EWFSSFGRKNNAGTKLFCISGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIP 342
Query: 241 GGSSTPLIPK 250
GGSS PLIPK
Sbjct: 343 GGSSVPLIPK 352
>sp|Q1RHA0|NUOF_RICBR NADH-quinone oxidoreductase subunit F OS=Rickettsia bellii (strain
RML369-C) GN=nuoF PE=3 SV=1
Length = 417
Score = 291 bits (746), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 141/250 (56%), Positives = 174/250 (69%), Gaps = 51/250 (20%)
Query: 1 MRHDPHKLVEGCLVAGRAMGAKAAYIYIRGEFYNEASNMQVAISETLKIWSIHPPWYITV 60
+R++PHKL+EGCL+
Sbjct: 97 LRYEPHKLIEGCLL---------------------------------------------- 110
Query: 61 WTHGVAGRAMGAKAAYIYIRGEFYNEASNMQVAISEAYQAGLIGKNACGSGYDFDVFMHR 120
A A+GA + YIYIRGEFYNEASN+Q A+ EAY+ GLIGKNACGSG++ D+++HR
Sbjct: 111 -----ASFAIGANSCYIYIRGEFYNEASNIQRALDEAYKDGLIGKNACGSGFNCDIYLHR 165
Query: 121 GAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPEICRRGG 180
GAGAYICGEETAL+ES+EGK+G PRLKPPFPA G++GCPTT++NVE++AV P I RRG
Sbjct: 166 GAGAYICGEETALLESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGA 225
Query: 181 AWFASLGRPRNSGTKLFNISGHVNTPCTVEEEMSIPLKELIQRHAGDVIGGWDNLLAIIP 240
+WFAS+G+P N+GTK+F ISGHVN PC VEE M IPLKE+I++HAG V GGWDNL AIIP
Sbjct: 226 SWFASIGKPNNTGTKIFCISGHVNKPCNVEEAMGIPLKEIIEKHAGGVRGGWDNLKAIIP 285
Query: 241 GGSSTPLIPK 250
GGSS PL+PK
Sbjct: 286 GGSSVPLLPK 295
>sp|A8GYE0|NUOF_RICB8 NADH-quinone oxidoreductase subunit F OS=Rickettsia bellii (strain
OSU 85-389) GN=nuoF PE=3 SV=1
Length = 417
Score = 291 bits (746), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 141/250 (56%), Positives = 174/250 (69%), Gaps = 51/250 (20%)
Query: 1 MRHDPHKLVEGCLVAGRAMGAKAAYIYIRGEFYNEASNMQVAISETLKIWSIHPPWYITV 60
+R++PHKL+EGCL+
Sbjct: 97 LRYEPHKLIEGCLL---------------------------------------------- 110
Query: 61 WTHGVAGRAMGAKAAYIYIRGEFYNEASNMQVAISEAYQAGLIGKNACGSGYDFDVFMHR 120
A A+GA + YIYIRGEFYNEASN+Q A+ EAY+ GLIGKNACGSG++ D+++HR
Sbjct: 111 -----ASFAIGANSCYIYIRGEFYNEASNIQRALDEAYKDGLIGKNACGSGFNCDIYLHR 165
Query: 121 GAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPEICRRGG 180
GAGAYICGEETAL+ES+EGK+G PRLKPPFPA G++GCPTT++NVE++AV P I RRG
Sbjct: 166 GAGAYICGEETALLESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGA 225
Query: 181 AWFASLGRPRNSGTKLFNISGHVNTPCTVEEEMSIPLKELIQRHAGDVIGGWDNLLAIIP 240
+WFAS+G+P N+GTK+F ISGHVN PC VEE M IPLKE+I++HAG V GGWDNL AIIP
Sbjct: 226 SWFASIGKPNNTGTKIFCISGHVNKPCNVEEAMGIPLKEIIEKHAGGVRGGWDNLKAIIP 285
Query: 241 GGSSTPLIPK 250
GGSS PL+PK
Sbjct: 286 GGSSVPLLPK 295
>sp|Q68XY3|NUOF_RICTY NADH-quinone oxidoreductase subunit F OS=Rickettsia typhi (strain
ATCC VR-144 / Wilmington) GN=nuoF PE=3 SV=1
Length = 421
Score = 286 bits (733), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 130/186 (69%), Positives = 159/186 (85%)
Query: 65 VAGRAMGAKAAYIYIRGEFYNEASNMQVAISEAYQAGLIGKNACGSGYDFDVFMHRGAGA 124
+A A+GA YIYIRGEFYNEASNMQ A+ EAY GLIGKNACGSG+D ++++HRGAGA
Sbjct: 110 IASFAIGANNCYIYIRGEFYNEASNMQRALDEAYTEGLIGKNACGSGFDCNIYLHRGAGA 169
Query: 125 YICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPEICRRGGAWFA 184
YICGEETAL+ES+EGK+G PRLKPPFPA G++GCPTT++NVE++AV P I RRG +WFA
Sbjct: 170 YICGEETALLESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFA 229
Query: 185 SLGRPRNSGTKLFNISGHVNTPCTVEEEMSIPLKELIQRHAGDVIGGWDNLLAIIPGGSS 244
++G+P N+GTK+F ISGHVN PC +EE M IPLKELI+++AG V GGWDNL AIIPGG+S
Sbjct: 230 AIGKPNNTGTKIFCISGHVNKPCNIEEAMGIPLKELIEKYAGGVRGGWDNLKAIIPGGAS 289
Query: 245 TPLIPK 250
PL+PK
Sbjct: 290 VPLLPK 295
>sp|Q4UKA6|NUOF_RICFE NADH-quinone oxidoreductase subunit F OS=Rickettsia felis (strain
ATCC VR-1525 / URRWXCal2) GN=nuoF PE=3 SV=1
Length = 422
Score = 285 bits (730), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 131/186 (70%), Positives = 159/186 (85%)
Query: 65 VAGRAMGAKAAYIYIRGEFYNEASNMQVAISEAYQAGLIGKNACGSGYDFDVFMHRGAGA 124
+A A+GA YIYIRGEFYNEASN+Q A+ EAY+ GLIGKNACGSG+D ++++HRGAGA
Sbjct: 110 LASFAIGANDCYIYIRGEFYNEASNIQRALDEAYKDGLIGKNACGSGFDCNIYLHRGAGA 169
Query: 125 YICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPEICRRGGAWFA 184
YICGEETAL+ES+EGK+G PRLKPPFPA G++GCPTT++NVE++AV P I RRG +WFA
Sbjct: 170 YICGEETALLESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFA 229
Query: 185 SLGRPRNSGTKLFNISGHVNTPCTVEEEMSIPLKELIQRHAGDVIGGWDNLLAIIPGGSS 244
S+G+P N+GTK+F ISGHVN PC VEE M I LKELI+++AG V GGWDNL AIIPGGSS
Sbjct: 230 SIGKPNNTGTKIFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGGWDNLKAIIPGGSS 289
Query: 245 TPLIPK 250
PL+PK
Sbjct: 290 VPLLPK 295
>sp|Q9ZE33|NUOF_RICPR NADH-quinone oxidoreductase subunit F OS=Rickettsia prowazekii
(strain Madrid E) GN=nuoF PE=3 SV=1
Length = 421
Score = 285 bits (729), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 128/186 (68%), Positives = 160/186 (86%)
Query: 65 VAGRAMGAKAAYIYIRGEFYNEASNMQVAISEAYQAGLIGKNACGSGYDFDVFMHRGAGA 124
+A A+GA YIYIRGEFYNEASNMQ A+ EAY+ GLIGKNACGSG+D ++++HRGAGA
Sbjct: 110 IASFAIGANTCYIYIRGEFYNEASNMQRALDEAYKEGLIGKNACGSGFDCNIYLHRGAGA 169
Query: 125 YICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPEICRRGGAWFA 184
YICGEETAL+ES+EGK+G PRLKPPFPA G++GCPTT++NVE++AV P I RRG +WFA
Sbjct: 170 YICGEETALLESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFA 229
Query: 185 SLGRPRNSGTKLFNISGHVNTPCTVEEEMSIPLKELIQRHAGDVIGGWDNLLAIIPGGSS 244
++G+P N+GTK+F ISGHVN PC +EE M +PLKELI+++AG V GGW+NL AIIPGG+S
Sbjct: 230 AIGKPNNTGTKVFCISGHVNKPCNIEEVMGVPLKELIEKYAGGVRGGWNNLKAIIPGGAS 289
Query: 245 TPLIPK 250
PL+PK
Sbjct: 290 VPLLPK 295
>sp|A8GQT6|NUOF_RICRS NADH-quinone oxidoreductase subunit F OS=Rickettsia rickettsii
(strain Sheila Smith) GN=nuoF PE=2 SV=1
Length = 421
Score = 283 bits (725), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 129/186 (69%), Positives = 158/186 (84%)
Query: 65 VAGRAMGAKAAYIYIRGEFYNEASNMQVAISEAYQAGLIGKNACGSGYDFDVFMHRGAGA 124
+A A+GA YIYIRGEFYNEASN+Q A+ EAY+ GLIGKN+CGSG+D ++++HRGAGA
Sbjct: 110 LASFAIGANNCYIYIRGEFYNEASNIQRALDEAYKEGLIGKNSCGSGFDCNIYLHRGAGA 169
Query: 125 YICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPEICRRGGAWFA 184
YICGEETAL+ES+EGK+G PRLKPPFPA G++GCPTT++NVE++AV P I RRG +WFA
Sbjct: 170 YICGEETALLESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFA 229
Query: 185 SLGRPRNSGTKLFNISGHVNTPCTVEEEMSIPLKELIQRHAGDVIGGWDNLLAIIPGGSS 244
+G+P N+GTK+F ISGHVN PC VEE M I LKELI+++AG V GGWDNL AIIPGGSS
Sbjct: 230 GIGKPNNTGTKIFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGGWDNLKAIIPGGSS 289
Query: 245 TPLIPK 250
PL+PK
Sbjct: 290 VPLLPK 295
>sp|Q92JB2|NUOF_RICCN NADH-quinone oxidoreductase subunit F OS=Rickettsia conorii (strain
ATCC VR-613 / Malish 7) GN=nuoF PE=3 SV=1
Length = 421
Score = 283 bits (725), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 129/186 (69%), Positives = 158/186 (84%)
Query: 65 VAGRAMGAKAAYIYIRGEFYNEASNMQVAISEAYQAGLIGKNACGSGYDFDVFMHRGAGA 124
+A A+GA YIYIRGEFYNEASN+Q A+ EAY+ GLIGKN+CGSG+D ++++HRGAGA
Sbjct: 110 LASFAIGANNCYIYIRGEFYNEASNIQRALDEAYKEGLIGKNSCGSGFDCNIYLHRGAGA 169
Query: 125 YICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPEICRRGGAWFA 184
YICGEETAL+ES+EGK+G PRLKPPFPA G++GCPTT++NVE++AV P I RRG +WFA
Sbjct: 170 YICGEETALLESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFA 229
Query: 185 SLGRPRNSGTKLFNISGHVNTPCTVEEEMSIPLKELIQRHAGDVIGGWDNLLAIIPGGSS 244
+G+P N+GTK+F ISGHVN PC VEE M I LKELI+++AG V GGWDNL AIIPGGSS
Sbjct: 230 GIGKPNNTGTKIFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGGWDNLKAIIPGGSS 289
Query: 245 TPLIPK 250
PL+PK
Sbjct: 290 VPLLPK 295
>sp|A8EXI1|NUOF_RICCK NADH-quinone oxidoreductase subunit F OS=Rickettsia canadensis
(strain McKiel) GN=nuoF PE=3 SV=1
Length = 420
Score = 283 bits (724), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 131/186 (70%), Positives = 158/186 (84%)
Query: 65 VAGRAMGAKAAYIYIRGEFYNEASNMQVAISEAYQAGLIGKNACGSGYDFDVFMHRGAGA 124
+A A+GA YIYIRGEFYNEASN+Q A+ EAY+ GLIGKNACGSG+D ++++H GAGA
Sbjct: 110 LASFAIGANNCYIYIRGEFYNEASNIQRALDEAYKDGLIGKNACGSGFDCNIYLHCGAGA 169
Query: 125 YICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPEICRRGGAWFA 184
YICGEETAL+ES+EGK+G PRLKPPFPA G++GCPTT++NVE++AV P I RRG WFA
Sbjct: 170 YICGEETALLESLEGKKGMPRLKPPFPASFGLYGCPTTINNVESIAVVPTILRRGANWFA 229
Query: 185 SLGRPRNSGTKLFNISGHVNTPCTVEEEMSIPLKELIQRHAGDVIGGWDNLLAIIPGGSS 244
S+G+P N+GTK+F ISGHVN PC VEE M IPLKELI+++AG V GGW+NL AIIPGGSS
Sbjct: 230 SIGKPNNTGTKVFCISGHVNKPCNVEEVMGIPLKELIEKYAGGVQGGWNNLKAIIPGGSS 289
Query: 245 TPLIPK 250
PLIPK
Sbjct: 290 VPLIPK 295
>sp|A8F0M0|NUOF_RICM5 NADH-quinone oxidoreductase subunit F OS=Rickettsia massiliae
(strain Mtu5) GN=nuoF PE=3 SV=1
Length = 421
Score = 282 bits (721), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 129/186 (69%), Positives = 157/186 (84%)
Query: 65 VAGRAMGAKAAYIYIRGEFYNEASNMQVAISEAYQAGLIGKNACGSGYDFDVFMHRGAGA 124
+A A+GA YIYIRGEFYNEASN+Q A+ EAY+ GLIGKNAC SG+D ++++HRGAGA
Sbjct: 110 LASFAIGANNCYIYIRGEFYNEASNIQRALDEAYKEGLIGKNACDSGFDCNIYLHRGAGA 169
Query: 125 YICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPEICRRGGAWFA 184
YICGEETAL+ES+EGK+G PRLKPPFPA G++GCPTT++NVE++AV P I RRG +WFA
Sbjct: 170 YICGEETALLESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFA 229
Query: 185 SLGRPRNSGTKLFNISGHVNTPCTVEEEMSIPLKELIQRHAGDVIGGWDNLLAIIPGGSS 244
+G+P N+GTK+F ISGHVN PC VEE M I LKELI+++AG V GGWDNL AIIPGGSS
Sbjct: 230 GIGKPNNTGTKIFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGGWDNLKAIIPGGSS 289
Query: 245 TPLIPK 250
PL+PK
Sbjct: 290 VPLLPK 295
>sp|O07948|NUOF_RHOCA NADH-quinone oxidoreductase subunit F OS=Rhodobacter capsulatus
GN=nuoF PE=3 SV=1
Length = 431
Score = 281 bits (718), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 129/185 (69%), Positives = 154/185 (83%)
Query: 65 VAGRAMGAKAAYIYIRGEFYNEASNMQVAISEAYQAGLIGKNACGSGYDFDVFMHRGAGA 124
+AG AMGA+AAYIYIRGE+ E +Q AI E Y+AGLIGKNAC S YDFDV++H GAGA
Sbjct: 111 IAGFAMGARAAYIYIRGEYVREKEALQAAIDECYEAGLIGKNACRSDYDFDVYLHHGAGA 170
Query: 125 YICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPEICRRGGAWFA 184
YICGEETAL+ES+EGK+G PR+KPPFPA G++GCPTTV+NVE++AV P I RRGGAWFA
Sbjct: 171 YICGEETALLESLEGKKGMPRMKPPFPAGSGLYGCPTTVNNVESIAVVPTILRRGGAWFA 230
Query: 185 SLGRPRNSGTKLFNISGHVNTPCTVEEEMSIPLKELIQRHAGDVIGGWDNLLAIIPGGSS 244
+GRP N+G KLF +SGHVNTPC VEE MSI +KELI++H G V GGW NL A+IPGG+S
Sbjct: 231 GIGRPNNTGVKLFAMSGHVNTPCVVEEAMSISMKELIEKHGGGVRGGWKNLKAVIPGGAS 290
Query: 245 TPLIP 249
P+IP
Sbjct: 291 CPVIP 295
>sp|A8GM77|NUOF_RICAH NADH-quinone oxidoreductase subunit F OS=Rickettsia akari (strain
Hartford) GN=nuoF PE=3 SV=1
Length = 423
Score = 280 bits (716), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 129/186 (69%), Positives = 157/186 (84%)
Query: 65 VAGRAMGAKAAYIYIRGEFYNEASNMQVAISEAYQAGLIGKNACGSGYDFDVFMHRGAGA 124
+A A+GA YIYIRGEFYNEASN+Q A+ EAY+ LIGKNACGSG+D ++++HRGAGA
Sbjct: 110 LASFAIGANNCYIYIRGEFYNEASNIQRALDEAYKDRLIGKNACGSGFDCNIYLHRGAGA 169
Query: 125 YICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPEICRRGGAWFA 184
YICGEETAL+ES+EGK+G PRLKPPFPA G++GCPTT++NVE++AV P I RR +WFA
Sbjct: 170 YICGEETALLESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRRASWFA 229
Query: 185 SLGRPRNSGTKLFNISGHVNTPCTVEEEMSIPLKELIQRHAGDVIGGWDNLLAIIPGGSS 244
S+G+P N+GTK+F ISGHVN PC VEE M I LKELI+++AG V GGWDNL AIIPGGSS
Sbjct: 230 SIGKPNNTGTKIFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGGWDNLKAIIPGGSS 289
Query: 245 TPLIPK 250
PL+PK
Sbjct: 290 VPLLPK 295
>sp|P29913|NQO1_PARDE NADH-quinone oxidoreductase chain 1 OS=Paracoccus denitrificans
GN=nqo1 PE=1 SV=1
Length = 431
Score = 270 bits (689), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 121/184 (65%), Positives = 150/184 (81%)
Query: 65 VAGRAMGAKAAYIYIRGEFYNEASNMQVAISEAYQAGLIGKNACGSGYDFDVFMHRGAGA 124
+A AMGA AAYIYIRGEF E +Q AI E Y AGL+G+NA GSG+DFD+++H GAGA
Sbjct: 111 IASFAMGAHAAYIYIRGEFIREREALQAAIDECYDAGLLGRNAAGSGWDFDLYLHHGAGA 170
Query: 125 YICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPEICRRGGAWFA 184
YICGEETAL+ES+EGK+G PR+KPPFPA G++GCPTTV+NVE++AV P I RRG WFA
Sbjct: 171 YICGEETALLESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGAEWFA 230
Query: 185 SLGRPRNSGTKLFNISGHVNTPCTVEEEMSIPLKELIQRHAGDVIGGWDNLLAIIPGGSS 244
S GRP N+G KLF ++GHVNTPC VEE MSIP++ELI++H G + GGW NL A+IPGG+S
Sbjct: 231 SFGRPNNAGVKLFGLTGHVNTPCVVEEAMSIPMRELIEKHGGGIRGGWKNLKAVIPGGAS 290
Query: 245 TPLI 248
P++
Sbjct: 291 CPVL 294
>sp|P56912|NUOF1_RHIME NADH-quinone oxidoreductase subunit F 1 OS=Rhizobium meliloti
(strain 1021) GN=nuoF1 PE=3 SV=1
Length = 434
Score = 266 bits (680), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 130/249 (52%), Positives = 161/249 (64%), Gaps = 52/249 (20%)
Query: 1 MRHDPHKLVEGCLVAGRAMGAKAAYIYIRGEFYNEASNMQVAISETLKIWSIHPPWYITV 60
MRHDPH L+EGC+
Sbjct: 98 MRHDPHTLIEGCV----------------------------------------------- 110
Query: 61 WTHGVAGRAMGAKAAYIYIRGEFYNEASNMQVAISEAYQAGLIGKNACGSGYDFDVFMHR 120
+A AMGA AAYIY+RGEF E +Q AI E Y+ GL+GKN GYD D+++H
Sbjct: 111 ----IASFAMGAHAAYIYVRGEFIREREALQAAIDECYEYGLLGKNN-KLGYDIDIYVHH 165
Query: 121 GAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPEICRRGG 180
GAGAYICGEETAL+ES+EGK+G+PRLKPPFPA++G++GCPTTV+NVE++AV P I RRG
Sbjct: 166 GAGAYICGEETALLESLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVTPTILRRGA 225
Query: 181 AWFASLGRPRNSGTKLFNISGHVNTPCTVEEEMSIPLKELIQRHAGDVIGGWDNLLAIIP 240
W+ S GRP N GTKL+++SGHVN PCTVE+ MSIP ELI++H G + GGWDNLLA+IP
Sbjct: 226 GWYTSFGRPNNHGTKLYSVSGHVNRPCTVEDAMSIPFHELIEKHCGGIRGGWDNLLAVIP 285
Query: 241 GGSSTPLIP 249
GGSS P +P
Sbjct: 286 GGSSVPCVP 294
>sp|P56913|NUOF2_RHIME NADH-quinone oxidoreductase subunit F 2 OS=Rhizobium meliloti
(strain 1021) GN=nuoF2 PE=3 SV=2
Length = 421
Score = 190 bits (483), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 94/186 (50%), Positives = 129/186 (69%), Gaps = 1/186 (0%)
Query: 65 VAGRAMGAKAAYIYIRGEFYNEASNMQVAISEAYQAGLIGKNACGSGYDFDVFMHRGAGA 124
V+ A+GA+ AY+YIRGE+ M+ AI+EA++ G +G GSG++F V +HRGAGA
Sbjct: 109 VSAYAIGAETAYVYIRGEYVTAIRRMEQAIAEAHENGYLGIGILGSGFNFMVHIHRGAGA 168
Query: 125 YICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPEICRRGGAWFA 184
YICGEETA++ES+EGK+ +PRLKPPFPA G++ PT ++NVET+A P I RG AWF
Sbjct: 169 YICGEETAMLESLEGKRAQPRLKPPFPAVAGLYASPTVINNVETLACVPHIVMRGSAWFR 228
Query: 185 SLGRPRNSGTKLFNISGHVNTPCTVEEEMSIPLKELIQRHAGDVIGGWDNLLAIIPGGSS 244
+G R+ G KL+ +SG V P E M I L+EL++ HAG + G + A+IPGG S
Sbjct: 229 GIGPDRSPGPKLYCLSGQVRKPGLYELPMGISLRELVEEHAGGPLPG-RKVKAVIPGGVS 287
Query: 245 TPLIPK 250
P+IP+
Sbjct: 288 APVIPE 293
>sp|Q56222|NQO1_THET8 NADH-quinone oxidoreductase subunit 1 OS=Thermus thermophilus
(strain HB8 / ATCC 27634 / DSM 579) GN=nqo1 PE=1 SV=1
Length = 438
Score = 179 bits (454), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 93/185 (50%), Positives = 120/185 (64%), Gaps = 3/185 (1%)
Query: 65 VAGRAMGAKAAYIYIRGEFYNEASNMQVAISEAYQAGLIGKNACGSGYDFDVFMHRGAGA 124
+AG A+ A YIY+RGE+ A ++ AI EA G +GKN G+ + FD+ +HRGAGA
Sbjct: 120 LAGYAIRATVGYIYVRGEYRRAADRLEQAIKEARARGYLGKNLFGTDFSFDLHVHRGAGA 179
Query: 125 YICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPEICRRGGAWFA 184
YICGEETAL+ S+EG + PRLKPPFPA G++G PTT++NVET+A I RG WFA
Sbjct: 180 YICGEETALMNSLEGLRANPRLKPPFPAQSGLWGKPTTINNVETLASVVPIMERGADWFA 239
Query: 185 SLGRPRNSGTKLFNISGHVNTPCTVEEEMSIPLKELIQRHAGDVIGGWDNLLAIIPGGSS 244
+G ++ G KL+ ISG V P E M +ELI AG G + + AIIPGGSS
Sbjct: 240 QMGTEQSKGMKLYQISGPVKRPGVYELPMGTTFRELIYEWAG---GPLEPIQAIIPGGSS 296
Query: 245 TPLIP 249
TP +P
Sbjct: 297 TPPLP 301
>sp|P65567|NUOF_MYCTU NADH-quinone oxidoreductase subunit F OS=Mycobacterium tuberculosis
GN=nuoF PE=3 SV=1
Length = 445
Score = 177 bits (448), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 88/184 (47%), Positives = 125/184 (67%), Gaps = 2/184 (1%)
Query: 65 VAGRAMGAKAAYIYIRGEFYNEASNMQVAISEAYQAGLIGKNACGSGYDFDVFMHRGAGA 124
+A A+ A A++Y+RGE + A++EAY AG +G+N GSG+D ++ +H GAGA
Sbjct: 121 IAAYAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGA 180
Query: 125 YICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPEICRRGGAWFA 184
YICGEETAL++S+EG++G+PRL+PPFPA G++GCPT ++NVET+A P I G WF
Sbjct: 181 YICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFR 240
Query: 185 SLGRPRNSGTKLFNISGHVNTPCTVEEEMSIPLKELIQRHAGDVIGGWDNLLAIIPGGSS 244
S+G ++ G L+++SGHV P E + I L+EL+ +AG V G L PGGSS
Sbjct: 241 SMGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLD-YAGGVRAG-HRLKFWTPGGSS 298
Query: 245 TPLI 248
TPL+
Sbjct: 299 TPLL 302
>sp|P65568|NUOF_MYCBO NADH-quinone oxidoreductase subunit F OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=nuoF PE=3 SV=1
Length = 445
Score = 177 bits (448), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 88/184 (47%), Positives = 125/184 (67%), Gaps = 2/184 (1%)
Query: 65 VAGRAMGAKAAYIYIRGEFYNEASNMQVAISEAYQAGLIGKNACGSGYDFDVFMHRGAGA 124
+A A+ A A++Y+RGE + A++EAY AG +G+N GSG+D ++ +H GAGA
Sbjct: 121 IAAYAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGA 180
Query: 125 YICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPEICRRGGAWFA 184
YICGEETAL++S+EG++G+PRL+PPFPA G++GCPT ++NVET+A P I G WF
Sbjct: 181 YICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFR 240
Query: 185 SLGRPRNSGTKLFNISGHVNTPCTVEEEMSIPLKELIQRHAGDVIGGWDNLLAIIPGGSS 244
S+G ++ G L+++SGHV P E + I L+EL+ +AG V G L PGGSS
Sbjct: 241 SMGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLD-YAGGVRAG-HRLKFWTPGGSS 298
Query: 245 TPLI 248
TPL+
Sbjct: 299 TPLL 302
>sp|O94500|NDUV1_SCHPO NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC18E5.10 PE=3 SV=1
Length = 452
Score = 174 bits (440), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 87/186 (46%), Positives = 122/186 (65%)
Query: 65 VAGRAMGAKAAYIYIRGEFYNEASNMQVAISEAYQAGLIGKNACGSGYDFDVFMHRGAGA 124
+A RA+ A A Y++IR ++Y E MQ I +AY L+GKN G+ ++ +H GAG+
Sbjct: 142 IAARAVEASACYLFIRKDYYEETVMMQKCIIQAYAKKLLGKNLLGTSIGLELLIHPGAGS 201
Query: 125 YICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPEICRRGGAWFA 184
YI GEE+ALI+S++G+ P + G+FG PT V NVETV+ P I ++G +F
Sbjct: 202 YITGEESALIQSLQGEFPVPDIPINNTITSGLFGLPTLVLNVETVSNLPAIIKKGPKFFI 261
Query: 185 SLGRPRNSGTKLFNISGHVNTPCTVEEEMSIPLKELIQRHAGDVIGGWDNLLAIIPGGSS 244
S+GRP N GTKLF+ISG VN P +E MSIPLK+LI+ +AG V GGW+ L+ I PGG
Sbjct: 262 SMGRPNNRGTKLFSISGEVNEPNVIEACMSIPLKDLIENYAGGVRGGWNKLVGIFPGGPC 321
Query: 245 TPLIPK 250
+ ++ K
Sbjct: 322 SGILNK 327
>sp|Q9I0J7|NUOF_PSEAE NADH-quinone oxidoreductase subunit F OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=nuoF PE=3 SV=1
Length = 448
Score = 170 bits (430), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 89/186 (47%), Positives = 119/186 (63%), Gaps = 3/186 (1%)
Query: 65 VAGRAMGAKAAYIYIRGEFYNEASNMQVAISEAYQAGLIGKNACGSGYDFDVFMHRGAGA 124
++ RA+ A YI++RGE+ + A N+ AI EA AGL+GKN GSG+DF++F+H GAG
Sbjct: 126 ISARALKAYRGYIFLRGEYVDAARNLNRAIDEAKAAGLLGKNILGSGFDFELFVHTGAGR 185
Query: 125 YICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPEICRRGGAWFA 184
YICGEETALI S+EG++ PR KPPFPA VGV+G PT V+NVET+ P I G W+
Sbjct: 186 YICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVETLCNVPAIVGNGVDWYK 245
Query: 185 SLGRP--RNSGTKLFNISGHVNTPCTVEEEMSIPLKELIQRHAGDVIGGWDNLLAIIPGG 242
+L RP + GTKL SG V P E + +EL + +AG + G+ L A PGG
Sbjct: 246 TLARPGSEDMGTKLMGFSGKVKNPGLWELPFGVSARELFEDYAGGMRDGF-QLKAWQPGG 304
Query: 243 SSTPLI 248
+ T +
Sbjct: 305 AGTGFL 310
>sp|Q9XAQ9|NUOF_STRCO NADH-quinone oxidoreductase subunit F OS=Streptomyces coelicolor
(strain ATCC BAA-471 / A3(2) / M145) GN=nuoF PE=3 SV=1
Length = 449
Score = 166 bits (421), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 83/184 (45%), Positives = 118/184 (64%), Gaps = 2/184 (1%)
Query: 65 VAGRAMGAKAAYIYIRGEFYNEASNMQVAISEAYQAGLIGKNACGSGYDFDVFMHRGAGA 124
+A A+ + A+IY+RGE + A+ EAY AG +G+N GSG D + +H GAGA
Sbjct: 123 IACYAIRSSHAFIYLRGEVVPVLRRLHEAVREAYAAGFLGENILGSGLDLTLTVHAGAGA 182
Query: 125 YICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPEICRRGGAWFA 184
YICGEETAL++S+EG++G+PRL+PPFPA G++ CPT V+NVE++A P I +G WF
Sbjct: 183 YICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTVVNNVESIASVPAILNKGKDWFR 242
Query: 185 SLGRPRNSGTKLFNISGHVNTPCTVEEEMSIPLKELIQRHAGDVIGGWDNLLAIIPGGSS 244
S+G ++ G L+++SGHV P E + I L++L+ G G L PGGSS
Sbjct: 243 SMGSEKSPGFTLYSLSGHVAGPGQYEAPLGITLRQLLDMSGGMRPG--HRLKFWTPGGSS 300
Query: 245 TPLI 248
TP+
Sbjct: 301 TPMF 304
>sp|P31979|NUOF_ECOLI NADH-quinone oxidoreductase subunit F OS=Escherichia coli (strain
K12) GN=nuoF PE=1 SV=3
Length = 445
Score = 160 bits (406), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 80/184 (43%), Positives = 117/184 (63%), Gaps = 1/184 (0%)
Query: 65 VAGRAMGAKAAYIYIRGEFYNEASNMQVAISEAYQAGLIGKNACGSGYDFDVFMHRGAGA 124
++ A+ A YI++RGE+ A N++ AI+EA +AGL+GKN G+G+DF++F+H GAG
Sbjct: 118 ISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGR 177
Query: 125 YICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPEICRRGGAWFA 184
YICGEETALI S+EG++ PR KPPFPA G +G PT V+NVET+ P I G W+
Sbjct: 178 YICGEETALINSLEGRRANPRSKPPFPATSGAWGKPTCVNNVETLCNVPAILANGVEWYQ 237
Query: 185 SLGRPRNSGTKLFNISGHVNTPCTVEEEMSIPLKELIQRHAGDVIGGWDNLLAIIPGGSS 244
++ + +++GTKL SG V P E +E+++ +AG + G A PGG+
Sbjct: 238 NISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-KFKAWQPGGAG 296
Query: 245 TPLI 248
T +
Sbjct: 297 TDFL 300
>sp|P33901|NUOF_SALTY NADH-quinone oxidoreductase subunit F OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=nuoF PE=3 SV=2
Length = 445
Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 80/184 (43%), Positives = 118/184 (64%), Gaps = 1/184 (0%)
Query: 65 VAGRAMGAKAAYIYIRGEFYNEASNMQVAISEAYQAGLIGKNACGSGYDFDVFMHRGAGA 124
++ A+ A YI++RGE+ A +++ AI+EA +AGL+GKN G+G+DF++F+H GAG
Sbjct: 118 ISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGR 177
Query: 125 YICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPEICRRGGAWFA 184
YICGEETALI S+EG++ PR KPPFPA GV+G PT V+NVET+ P I G W+
Sbjct: 178 YICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQ 237
Query: 185 SLGRPRNSGTKLFNISGHVNTPCTVEEEMSIPLKELIQRHAGDVIGGWDNLLAIIPGGSS 244
++ + +++GTKL SG V P E +E+++ +AG + G A PGG+
Sbjct: 238 NISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-KFKAWQPGGAG 296
Query: 245 TPLI 248
T +
Sbjct: 297 TDFL 300
>sp|O66841|NUOF_AQUAE NADH-quinone oxidoreductase subunit F OS=Aquifex aeolicus (strain
VF5) GN=nuoF PE=3 SV=1
Length = 426
Score = 158 bits (399), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 81/166 (48%), Positives = 111/166 (66%)
Query: 65 VAGRAMGAKAAYIYIRGEFYNEASNMQVAISEAYQAGLIGKNACGSGYDFDVFMHRGAGA 124
++ A+GA AYIYIRGE+ ++ AI EA + G +GKN GSG+D ++++ RGAGA
Sbjct: 120 ISSYAIGANEAYIYIRGEYPAGYYILRDAIEEAKKKGFLGKNILGSGFDLEIYVARGAGA 179
Query: 125 YICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPEICRRGGAWFA 184
YICGEETALIES+EGK+G PRLKPP+P G++G PT V+NVET+A P I G +
Sbjct: 180 YICGEETALIESLEGKRGHPRLKPPYPVQKGLWGKPTVVNNVETIANVPFIISMGWEEYR 239
Query: 185 SLGRPRNSGTKLFNISGHVNTPCTVEEEMSIPLKELIQRHAGDVIG 230
+G +G KLF +SG V P E M+ L+E+I ++AG +G
Sbjct: 240 YIGPSDYAGPKLFPVSGKVKKPGVYELPMNTTLREVIFKYAGGTLG 285
>sp|Q89AU2|NUOF_BUCBP NADH-quinone oxidoreductase subunit F OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=nuoF PE=3 SV=1
Length = 444
Score = 157 bits (396), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 78/184 (42%), Positives = 112/184 (60%), Gaps = 1/184 (0%)
Query: 65 VAGRAMGAKAAYIYIRGEFYNEASNMQVAISEAYQAGLIGKNACGSGYDFDVFMHRGAGA 124
++ A+ +YI++RGE+ N ++ +I EA G +GKN CGS F++F+H GAG
Sbjct: 121 ISAFALSVTKSYIFLRGEYVNTERILKQSIIEATNYGYLGKNVCGSNLTFEIFIHTGAGR 180
Query: 125 YICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPEICRRGGAWFA 184
YICGEETALI S+EG++ PR KPPFPA VG++G PT V+NVET++ P I G W+
Sbjct: 181 YICGEETALINSLEGRRANPRFKPPFPAYVGLWGKPTCVNNVETLSNVPAIFLNGVKWYK 240
Query: 185 SLGRPRNSGTKLFNISGHVNTPCTVEEEMSIPLKELIQRHAGDVIGGWDNLLAIIPGGSS 244
L + ++GTK+ SG V P E I +E+ +R+AG + L PGG+S
Sbjct: 241 GLSKSLDTGTKMMGFSGSVKFPGIWELPFGITAREIFERYAGGMKNN-KKLKVWQPGGAS 299
Query: 245 TPLI 248
T +
Sbjct: 300 TSFL 303
>sp|P57256|NUOF_BUCAI NADH-quinone oxidoreductase subunit F OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=nuoF PE=3 SV=1
Length = 444
Score = 144 bits (362), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 112/184 (60%), Gaps = 1/184 (0%)
Query: 65 VAGRAMGAKAAYIYIRGEFYNEASNMQVAISEAYQAGLIGKNACGSGYDFDVFMHRGAGA 124
++ A+ AYI++RGE+ ++ +I EA G IG N GS ++ ++ +H GAG
Sbjct: 120 LSAYALNVSRAYIFLRGEYVQAEHILKQSIQEAINFGFIGLNILGSNFNIELVLHTGAGR 179
Query: 125 YICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPEICRRGGAWFA 184
YICGEETALI S+EG++ PR KPPFPA G++G PT V+NVET++ P I G +W+
Sbjct: 180 YICGEETALINSLEGRRANPRSKPPFPAVFGLWGKPTCVNNVETLSNVPCIILNGVSWYK 239
Query: 185 SLGRPRNSGTKLFNISGHVNTPCTVEEEMSIPLKELIQRHAGDVIGGWDNLLAIIPGGSS 244
+L + ++GTKL SG+V P E +E+++ +A + G+ +L A PGG+
Sbjct: 240 NLSKSSDTGTKLMGFSGNVRNPGVWELPFGTTAREILEDYAHGMKSGF-SLKAWQPGGAG 298
Query: 245 TPLI 248
T +
Sbjct: 299 TDFL 302
>sp|Q8K9Y3|NUOF_BUCAP NADH-quinone oxidoreductase subunit F OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=nuoF PE=3 SV=1
Length = 447
Score = 142 bits (358), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 111/188 (59%), Gaps = 2/188 (1%)
Query: 65 VAGRAMGAKAAYIYIRGEFYNEASNMQVAISEAYQAGLIGKNACGSGYDFDVFMHRGAGA 124
++ A+ YI++RGE+ ++ +I EA G IG N SG++F++F+H GAG
Sbjct: 118 LSAFALNVSRGYIFLRGEYIKAEYILKKSIQEAINFGFIGSNILNSGFNFELFLHTGAGR 177
Query: 125 YICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPEICRRGGAWFA 184
YICGEETALI S+EG++ PR KPPFPA G++G PT V+NVET++ P I G W+
Sbjct: 178 YICGEETALINSLEGRRANPRAKPPFPAVFGLWGKPTCVNNVETLSNVPSIVLHGVNWYK 237
Query: 185 SLGRPRN-SGTKLFNISGHVNTPCTVEEEMSIPLKELIQRHAGDVIGGWDNLLAIIPGGS 243
L + + +GTKL SG VN P E +E+++ +A + G L + PGG+
Sbjct: 238 KLSKSTDTTGTKLMGFSGKVNNPGVWELPFGTTAREILEDYARGMKSGLF-LKSWQPGGA 296
Query: 244 STPLIPKR 251
T + ++
Sbjct: 297 GTDFLIEK 304
>sp|Q46507|HNDC_DESFR NADP-reducing hydrogenase subunit HndC OS=Desulfovibrio
fructosovorans GN=hndC PE=1 SV=1
Length = 490
Score = 142 bits (357), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 72/162 (44%), Positives = 102/162 (62%)
Query: 60 VWTHGVAGRAMGAKAAYIYIRGEFYNEASNMQVAISEAYQAGLIGKNACGSGYDFDVFMH 119
V + G A+GA +YIR E+ ++ AI +A + GL+G+N GSG+DFD+ +
Sbjct: 110 VEAMAIGGYAIGATRGTVYIRAEYPLAIKRLKKAIDDAREYGLLGENIFGSGFDFDIELK 169
Query: 120 RGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPEICRRG 179
GAGA++CGEETALI S+EGK+G+P KPPFPA G + PT V+NVET A P I G
Sbjct: 170 YGAGAFVCGEETALIRSMEGKRGEPVTKPPFPAQSGYWEKPTIVNNVETFANIPAIIING 229
Query: 180 GAWFASLGRPRNSGTKLFNISGHVNTPCTVEEEMSIPLKELI 221
WF+ +G + GTK+F ++G + +E M I L+E+I
Sbjct: 230 ADWFSGIGTATSKGTKVFALAGKIQNVGLIEVPMGISLREVI 271
>sp|P22317|HOXF_CUPNH NAD-reducing hydrogenase HoxS subunit alpha OS=Cupriavidus necator
(strain ATCC 17699 / H16 / DSM 428 / Stanier 337)
GN=hoxF PE=1 SV=1
Length = 602
Score = 141 bits (356), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 101/158 (63%), Gaps = 1/158 (0%)
Query: 65 VAGRAMGAKAAYIYIRGEFYNEASNMQVAISEAYQAGLIGKNACG-SGYDFDVFMHRGAG 123
+A A+G + +Y+RGE++ ++ + E + GL+G+ G +G+DFD+ + GAG
Sbjct: 275 IAAYAIGCRKGIVYLRGEYFYLKDYLERQLQELREDGLLGRAIGGRAGFDFDIRIQMGAG 334
Query: 124 AYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPEICRRGGAWF 183
AYICG+E+ALIES EGK+G PR+KPPFP G G PT+V+NVET A I G WF
Sbjct: 335 AYICGDESALIESCEGKRGTPRVKPPFPVQQGYLGKPTSVNNVETFAAVSRIMEEGADWF 394
Query: 184 ASLGRPRNSGTKLFNISGHVNTPCTVEEEMSIPLKELI 221
++G P ++GT+L +++G + P E E + L E++
Sbjct: 395 RAMGTPDSAGTRLLSVAGDCSKPGIYEVEWGVTLNEVL 432
>sp|E9Q557|DESP_MOUSE Desmoplakin OS=Mus musculus GN=Dsp PE=3 SV=1
Length = 2883
Score = 36.2 bits (82), Expect = 0.20, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 13/72 (18%)
Query: 33 YNEASNMQVAISETLKIWSIHPPWYITVWTHGVAGRAMGAKAAYIYIRGEFYNEASNMQV 92
YNE + ++ I E +KI + P G A + A+AA +I + SN+++
Sbjct: 2276 YNETTKQKLGIYEAMKIGLVRP---------GTALELLEAQAATGFI----VDPVSNLRL 2322
Query: 93 AISEAYQAGLIG 104
+ EAY+ GL+G
Sbjct: 2323 PVEEAYKRGLVG 2334
>sp|P15924|DESP_HUMAN Desmoplakin OS=Homo sapiens GN=DSP PE=1 SV=3
Length = 2871
Score = 36.2 bits (82), Expect = 0.20, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 13/72 (18%)
Query: 33 YNEASNMQVAISETLKIWSIHPPWYITVWTHGVAGRAMGAKAAYIYIRGEFYNEASNMQV 92
YNE + ++ I E +KI + P G A + A+AA +I + SN+++
Sbjct: 2264 YNETTKQKLGIYEAMKIGLVRP---------GTALELLEAQAATGFI----VDPVSNLRL 2310
Query: 93 AISEAYQAGLIG 104
+ EAY+ GL+G
Sbjct: 2311 PVEEAYKRGLVG 2322
>sp|Q39593|SAC1_CHLRE Putative sulfur deprivation response regulator OS=Chlamydomonas
reinhardtii GN=SAC1 PE=2 SV=1
Length = 585
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 126 ICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVS-NVETVAVAPEICRRGGAWFA 184
I G T LI +Q P+LK PF +VG+ G P TV+ + V +P + R+ A
Sbjct: 133 IIGTSTNLIARGLAQQDDPKLKLPF-VEVGIIGLPLTVAGGIYVVLFSPLLLRKRDTMMA 191
Query: 185 S-LGRPR 190
+ + PR
Sbjct: 192 AVVADPR 198
>sp|Q63U95|ASSY_BURPS Argininosuccinate synthase OS=Burkholderia pseudomallei (strain
K96243) GN=argG PE=3 SV=1
Length = 404
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 205 TPCTVEEEMSIPLKELIQRHAGDVIGGWD 233
TPC VE E S+ +EL+ HAG I G D
Sbjct: 350 TPCAVESEQSLYSRELVTLHAGRAISGED 378
>sp|A6XHF7|MCPB_TRIRU Carboxypeptidase 2 OS=Trichophyton rubrum GN=MCPB PE=2 SV=1
Length = 538
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 8/106 (7%)
Query: 27 YIRGEFYNEASNMQVAISETLKI---WSIHPPWYITVWTHGVAGRAMGAKAAYIYIRGEF 83
Y+ F ++++A +T I ++ P T AGRA G K +IY
Sbjct: 186 YLATNFDPNRDHLKLARQQTRDIKELFAKFSPHIATDMHEFTAGRAFGPKKDFIYAADAL 245
Query: 84 YNEASNMQV-----AISEAYQAGLIGKNACGSGYDFDVFMHRGAGA 124
++ A N+ + +SE A +GK+ +G +D ++ G +
Sbjct: 246 FSAAKNLNIDEGIRQLSEKLFAKRMGKDIEAAGLRWDPYITLGESS 291
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,350,873
Number of Sequences: 539616
Number of extensions: 4271841
Number of successful extensions: 7939
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 7839
Number of HSP's gapped (non-prelim): 95
length of query: 251
length of database: 191,569,459
effective HSP length: 115
effective length of query: 136
effective length of database: 129,513,619
effective search space: 17613852184
effective search space used: 17613852184
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)