Query psy11033
Match_columns 251
No_of_seqs 194 out of 1477
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 16:25:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11033.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11033hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i9v_1 NADH-quinone oxidoreduc 100.0 1.7E-57 5.7E-62 434.4 22.2 199 47-248 96-300 (438)
2 3i9v_1 NADH-quinone oxidoreduc 98.6 1.7E-08 5.7E-13 96.6 4.3 51 1-51 107-157 (438)
3 2j58_A WZA, outer membrane lip 83.6 1.4 4.8E-05 40.5 5.4 36 195-231 151-187 (359)
4 3p42_A Predicted protein; beta 73.4 4.3 0.00015 35.2 5.1 35 195-230 128-162 (236)
5 2j58_A WZA, outer membrane lip 63.2 9.1 0.00031 35.0 5.3 34 196-230 236-270 (359)
6 2o3a_A UPF0106 protein AF_0751 25.6 66 0.0022 26.8 3.9 37 59-97 19-56 (178)
7 3na3_A DNA mismatch repair pro 21.2 42 0.0014 30.6 2.2 32 23-55 258-289 (348)
8 1b63_A MUTL; DNA mismatch repa 20.8 48 0.0017 29.6 2.5 34 22-56 254-287 (333)
9 2ia7_A Tail lysozyme, putative 20.0 1.9E+02 0.0065 21.9 5.5 76 106-183 7-86 (134)
10 2bye_A Phospholipase C, epsilo 19.6 1.1E+02 0.0037 23.6 3.9 32 192-223 7-40 (110)
No 1
>3i9v_1 NADH-quinone oxidoreductase subunit 1; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_1* 2fug_1* 3iam_1* 3ias_1* 3m9s_1*
Probab=100.00 E-value=1.7e-57 Score=434.35 Aligned_cols=199 Identities=47% Similarity=0.797 Sum_probs=192.9
Q ss_pred hhhhccCcHhHHhHhHH------HHHHHHhcCceEEEEeccCcHHHHHHHHHHHHHHHHcCccCcCCCCCCCcccEEEEE
Q psy11033 47 LKIWSIHPPWYITVWTH------GVAGRAMGAKAAYIYIRGEFYNEASNMQVAISEAYQAGLIGKNACGSGYDFDVFMHR 120 (251)
Q Consensus 47 ~~~~~~~d~~l~~~~~~------~i~a~a~gA~~~~I~i~~~~~~a~~~l~~ai~e~~~~g~~g~~~~g~~~~~~I~v~~ 120 (251)
-||++.+|++||+.+|| .|+++++||+++|||||+||++++++|++|+++++++||||+|||||+|+++|+|+.
T Consensus 96 ~EPg~~~Dr~lm~~~p~~vieG~~i~~~a~ga~~~~I~ir~e~~~ai~~l~~Ai~~a~~~g~lg~~i~gs~~~~~i~v~~ 175 (438)
T 3i9v_1 96 SEPGSFKDRYILEDVPHLLIEGMILAGYAIRATVGYIYVRGEYRRAADRLEQAIKEARARGYLGKNLFGTDFSFDLHVHR 175 (438)
T ss_dssp CSTTCCSHHHHHHHCHHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTSSBTTGGGSSCCBEEEEEE
T ss_pred CCccchhhHHHHHHCHHHHHHHHHHHHHHhCCCEEEEEEccCcHHHHHHHHHHHHHHHHcCCCcccccCCCCCceEEEEE
Confidence 58999999999999997 679999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccCChHHHHHHHHcCCCCCCCCCCCCCcccCCCCCCceeecHHHHHHHHHHHHcCHHHHHhcCCCCCCCceEEEee
Q psy11033 121 GAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPEICRRGGAWFASLGRPRNSGTKLFNIS 200 (251)
Q Consensus 121 ~~~~Yp~GeE~aLi~sl~G~~~~P~~kpp~P~~~G~~g~PTvV~NVeTla~V~~a~r~G~pw~~~~g~~~~~GtrLvTVs 200 (251)
++++|||||||+||++++|+++.||.|||+|+++|+||+||+||||||+++|++++++|.+||+++|++.++|+|++|||
T Consensus 176 ~~g~Yp~GeEtaLi~sleGk~~~Pr~~Pp~Pa~~Gl~g~PtvV~NVeTla~v~~iv~~G~~~~~~~G~~~~~gtk~~tvs 255 (438)
T 3i9v_1 176 GAGAYICGEETALMNSLEGLRANPRLKPPFPAQSGLWGKPTTINNVETLASVVPIMERGADWFAQMGTEQSKGMKLYQIS 255 (438)
T ss_dssp CCSCGGGGSHHHHHHHHTTSCCCCCCCSSCTTTSCGGGSCEEEEEHHHHHTHHHHHHSCHHHHHTBBCSSSBSEEEEEEE
T ss_pred cCCcCCCChHHHHHHHHhCCccCCCCCCCCchhcCCcCCceEEECHHHHHHHHHHHHhCcHHHHhcCCCCCCCcEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCceeEEecccCcHHHHHHhhcCCCCCCCcccceEEeCCCCCCCC
Q psy11033 201 GHVNTPCTVEEEMSIPLKELIQRHAGDVIGGWDNLLAIIPGGSSTPLI 248 (251)
Q Consensus 201 G~V~~Pgv~evpiGtpl~~LI~~~aGG~~~~~~~~~~vi~GGpm~G~l 248 (251)
|+|++|++|++|+|||+++||+++|||+.. ++++|++||||++++
T Consensus 256 G~V~~pg~~evp~Gt~l~eli~~~~GG~~~---~~~~vi~GG~sg~~~ 300 (438)
T 3i9v_1 256 GPVKRPGVYELPMGTTFRELIYEWAGGPLE---PIQAIIPGGSSTPPL 300 (438)
T ss_dssp SSBSSCEEEEEETTCBHHHHHHTTTCCBSS---CEEEEECSSSSSCCE
T ss_pred CccCCCceEEEeCCCCHHHHHHHHcCCccc---cCCEEEECCCCCccc
Confidence 999999999999999999999548999874 589999999999887
No 2
>3i9v_1 NADH-quinone oxidoreductase subunit 1; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_1* 2fug_1* 3iam_1* 3ias_1* 3m9s_1*
Probab=98.62 E-value=1.7e-08 Score=96.56 Aligned_cols=51 Identities=37% Similarity=0.619 Sum_probs=47.7
Q ss_pred CCCCchhHhHHHHHHHHHhCCCeEEEEEeccccchhHHHHHHHHHHhhhhc
Q psy11033 1 MRHDPHKLVEGCLVAGRAMGAKAAYIYIRGEFYNEASNMQVAISETLKIWS 51 (251)
Q Consensus 1 ~~~~~~~~~~g~~~~~~~~~a~~~~i~i~~e~~~~~~~~~~a~~~~~~~~~ 51 (251)
|+++||+||||+.|+++++||+++|||||+||.+..++|+.|++|+|+-.+
T Consensus 107 m~~~p~~vieG~~i~~~a~ga~~~~I~ir~e~~~ai~~l~~Ai~~a~~~g~ 157 (438)
T 3i9v_1 107 LEDVPHLLIEGMILAGYAIRATVGYIYVRGEYRRAADRLEQAIKEARARGY 157 (438)
T ss_dssp HHHCHHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHCHHHHHHHHHHHHHHhCCCEEEEEEccCcHHHHHHHHHHHHHHHHcCC
Confidence 678999999999999999999999999999999999999999999986443
No 3
>2j58_A WZA, outer membrane lipoprotein WZA; membrane protein; 2.26A {Escherichia coli} PDB: 2w8i_A 2w8h_A*
Probab=83.56 E-value=1.4 Score=40.52 Aligned_cols=36 Identities=14% Similarity=0.234 Sum_probs=32.3
Q ss_pred eEEEeeecccCceeEEecc-cCcHHHHHHhhcCCCCCC
Q psy11033 195 KLFNISGHVNTPCTVEEEM-SIPLKELIQRHAGDVIGG 231 (251)
Q Consensus 195 rLvTVsG~V~~Pgv~evpi-Gtpl~~LI~~~aGG~~~~ 231 (251)
.-++|.|.|++|+.|.+.- ++++.+.|. .|||++..
T Consensus 151 ~~V~V~GeV~~PG~y~l~~~~~tl~~ai~-~AGG~t~~ 187 (359)
T 2j58_A 151 QKVYVTGEVANSGKQAITNIPLTVMDAIN-AAGGLAAD 187 (359)
T ss_dssp CEEEEEESBSSCEEEECCSSCCBHHHHHH-HTTSBCTT
T ss_pred eEEEEEceecCCeEEEeCCCCCcHHHHHH-HcCCCCcc
Confidence 3589999999999999999 999999998 79998753
No 4
>3p42_A Predicted protein; beta-grAsp, unknown function; HET: MSE; 1.91A {Escherichia coli O127}
Probab=73.41 E-value=4.3 Score=35.23 Aligned_cols=35 Identities=11% Similarity=0.134 Sum_probs=31.7
Q ss_pred eEEEeeecccCceeEEecccCcHHHHHHhhcCCCCC
Q psy11033 195 KLFNISGHVNTPCTVEEEMSIPLKELIQRHAGDVIG 230 (251)
Q Consensus 195 rLvTVsG~V~~Pgv~evpiGtpl~~LI~~~aGG~~~ 230 (251)
..++|.|.|..|+.+.-..|.++++.|+ .|||+..
T Consensus 128 ~tV~V~G~V~~p~~v~~~~g~~~~dYi~-~agg~~~ 162 (236)
T 3p42_A 128 VTITLLGAVSGAGQLPWLAGRSVTDYLQ-DHPRLAG 162 (236)
T ss_dssp SEEEEEESBTTCEEEECCTTCCHHHHHT-TSCBCTT
T ss_pred CEEEEEeecCCcCeEeecCCCCHHHHHH-hCCCCCC
Confidence 4489999999999999999999999998 7999864
No 5
>2j58_A WZA, outer membrane lipoprotein WZA; membrane protein; 2.26A {Escherichia coli} PDB: 2w8i_A 2w8h_A*
Probab=63.20 E-value=9.1 Score=35.03 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=30.5
Q ss_pred EEEeeecccCceeEEec-ccCcHHHHHHhhcCCCCC
Q psy11033 196 LFNISGHVNTPCTVEEE-MSIPLKELIQRHAGDVIG 230 (251)
Q Consensus 196 LvTVsG~V~~Pgv~evp-iGtpl~~LI~~~aGG~~~ 230 (251)
-++|.|.|++|+.|+.+ -+.++.++|. .+||+..
T Consensus 236 ~v~V~GeV~~pg~~~l~~~~~tl~eal~-~AGGi~~ 270 (359)
T 2j58_A 236 KVFVMGEVGKQSTLKMDRSGMTLAEALG-NAEGISQ 270 (359)
T ss_dssp EEEEEESBSSCEEEECBTTBCBHHHHHH-HTTCBCT
T ss_pred eEEeeccccCcceEeecCCCCCHHHHHH-hCCCCCc
Confidence 38999999999999996 6999999998 7999875
No 6
>2o3a_A UPF0106 protein AF_0751; structural genomics, unknown function, PSI-2, protein structure initiative; 2.20A {Archaeoglobus fulgidus} SCOP: c.116.1.8
Probab=25.57 E-value=66 Score=26.81 Aligned_cols=37 Identities=22% Similarity=0.309 Sum_probs=27.0
Q ss_pred hHhHH-HHHHHHhcCceEEEEeccCcHHHHHHHHHHHHHH
Q psy11033 59 TVWTH-GVAGRAMGAKAAYIYIRGEFYNEASNMQVAISEA 97 (251)
Q Consensus 59 ~~~~~-~i~a~a~gA~~~~I~i~~~~~~a~~~l~~ai~e~ 97 (251)
|.-+| ...|+|+||++.++.=.+ +...+.+++-.+..
T Consensus 19 RiTTHV~LtARAfGA~~iil~~~D--~~v~esv~dV~~rw 56 (178)
T 2o3a_A 19 RISTHVALTARAFGAKGIYFDTED--KSVFESVRDVVERW 56 (178)
T ss_dssp HHHHHHHHHHHHTTCSEEEESSCC--HHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHhCCCeeEEeCCC--HHHHHHHHHHHHhc
Confidence 33445 778999999998887664 45777887766654
No 7
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=21.21 E-value=42 Score=30.60 Aligned_cols=32 Identities=9% Similarity=0.197 Sum_probs=27.0
Q ss_pred eEEEEEeccccchhHHHHHHHHHHhhhhccCcH
Q psy11033 23 AAYIYIRGEFYNEASNMQVAISETLKIWSIHPP 55 (251)
Q Consensus 23 ~~~i~i~~e~~~~~~~~~~a~~~~~~~~~~~d~ 55 (251)
.-|+||+|.++... .|..||+++|+.++.+++
T Consensus 258 ~q~~fVNgR~v~~~-~l~~ai~~~y~~~l~~~~ 289 (348)
T 3na3_A 258 IFLLFINHRLVEST-SLRKAIETVYAAYLPKNT 289 (348)
T ss_dssp EEEEEETTEECCCT-THHHHHHHHHHTTSCTTC
T ss_pred cEEEEECCeEecCH-HHHHHHHHHHHHhCcCCC
Confidence 45899999999875 799999999999886543
No 8
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=20.84 E-value=48 Score=29.59 Aligned_cols=34 Identities=15% Similarity=0.173 Sum_probs=28.4
Q ss_pred CeEEEEEeccccchhHHHHHHHHHHhhhhccCcHh
Q psy11033 22 KAAYIYIRGEFYNEASNMQVAISETLKIWSIHPPW 56 (251)
Q Consensus 22 ~~~~i~i~~e~~~~~~~~~~a~~~~~~~~~~~d~~ 56 (251)
+.-|+||++.+++. +.|..||+++|+..+.++++
T Consensus 254 ~~~~~fvNgR~V~~-~~l~~ai~~~y~~~l~~~~~ 287 (333)
T 1b63_A 254 EIQYCYVNGRMMRD-RLINHAIRQACEDKLGADQQ 287 (333)
T ss_dssp GCEEEEETTEECCC-HHHHHHHHHHHHHHSSSCCC
T ss_pred CcEEEEECCEEecC-HHHHHHHHHHHHhhccCCCC
Confidence 46799999999986 57999999999998776554
No 9
>2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
Probab=20.01 E-value=1.9e+02 Score=21.91 Aligned_cols=76 Identities=20% Similarity=0.217 Sum_probs=29.2
Q ss_pred CCCCCCCcccEEEEEcCc-cccCChHHHHHHHHcCCCCCCCCCCCCCcccCCCCCCcee---ecHHHHHHHHHHHHcCHH
Q psy11033 106 NACGSGYDFDVFMHRGAG-AYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTV---SNVETVAVAPEICRRGGA 181 (251)
Q Consensus 106 ~~~g~~~~~~I~v~~~~~-~Yp~GeE~aLi~sl~G~~~~P~~kpp~P~~~G~~g~PTvV---~NVeTla~V~~a~r~G~p 181 (251)
+.+|.|+.+.+.+-...+ ....| ...+-+++.-.---|.+-.+.--+.|+. -|.++ .|..|...+...+++-..
T Consensus 7 ~flg~g~~fp~~~~~~g~~~~~~~-~~~I~qsI~~iL~T~~G~r~~~pdyGs~-l~dli~~~~~~~~~~~i~~~i~~al~ 84 (134)
T 2ia7_A 7 EFLGTGWKFPVAAGADGAMVLSSA-EEDIAESIRIILGTARGERVMRPDFGCG-IHDRVFSVINTTTLGLIENEVKEALI 84 (134)
T ss_dssp -----------------CCCCCCH-HHHHHHHHHHHHTCCTTSSTTCTTCSCG-GGGCCCSCCCHHHHHHHHHHHHHHHH
T ss_pred cccccCccCCceeCCCCCeEEecc-HHHHHHHHHHHHCCCCCCcccCcccCCC-chHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 356778888777764444 34455 4555566543322223322344456642 22222 277777777777765444
Q ss_pred HH
Q psy11033 182 WF 183 (251)
Q Consensus 182 w~ 183 (251)
-+
T Consensus 85 ~~ 86 (134)
T 2ia7_A 85 LW 86 (134)
T ss_dssp HH
T ss_pred Hh
Confidence 33
No 10
>2bye_A Phospholipase C, epsilon 1; RAS association domain, ubiquitin superfold; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=19.58 E-value=1.1e+02 Score=23.59 Aligned_cols=32 Identities=16% Similarity=0.100 Sum_probs=26.5
Q ss_pred CCceEEEeeecc--cCceeEEecccCcHHHHHHh
Q psy11033 192 SGTKLFNISGHV--NTPCTVEEEMSIPLKELIQR 223 (251)
Q Consensus 192 ~GtrLvTVsG~V--~~Pgv~evpiGtpl~~LI~~ 223 (251)
..+.+++|.|.. ..+.++.+..+++.+|||+.
T Consensus 7 ~~tf~v~V~gv~~~ePftI~~~~~~STAkdvl~q 40 (110)
T 2bye_A 7 LQTHRVTVHGVPGPEPFTVFTINGGTKAKQLLQQ 40 (110)
T ss_dssp CCCCEEEESSCSSSSSSEEEECCTTCCHHHHHHH
T ss_pred CcEEEEEEcCCCCCCCcEEEEecCCCcHHHHHHH
Confidence 347889999976 44579999999999999984
Done!