RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11033
(251 letters)
>3i9v_1 NADH-quinone oxidoreductase subunit 1; electron transport,
respiratory chain, cell flavoprotein, FMN, iron,
iron-sulfur, membrane; HET: FMN; 3.10A {Thermus
thermophilus} PDB: 2ybb_1* 2fug_1* 3iam_1* 3ias_1*
3m9s_1*
Length = 438
Score = 342 bits (880), Expect = e-118
Identities = 98/250 (39%), Positives = 128/250 (51%), Gaps = 54/250 (21%)
Query: 1 MRHDPHKLVEGCLVAGRAMGAKAAYIYIRGEFYNEASNMQVAISETLKIWSIHPPWYITV 60
+ PH L+EG ++AG A+ A YIY+RGE+ A ++ AI E
Sbjct: 107 LEDVPHLLIEGMILAGYAIRATVGYIYVRGEYRRAADRLEQAIKE--------------- 151
Query: 61 WTHGVAGRAMGAKAAYIYIRGEFYNEASNMQVAISEAYQAGLIGKNACGSGYDFDVFMHR 120
A G +GKN G+ + FD+ +HR
Sbjct: 152 ------------------------------------ARARGYLGKNLFGTDFSFDLHVHR 175
Query: 121 GAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPEICRRGG 180
GAGAYICGEETAL+ S+EG + PRLKPPFPA G++G PTT++NVET+A I RG
Sbjct: 176 GAGAYICGEETALMNSLEGLRANPRLKPPFPAQSGLWGKPTTINNVETLASVVPIMERGA 235
Query: 181 AWFASLGRPRNSGTKLFNISGHVNTPCTVEEEMSIPLKELIQRHAGDVIGGWDNLLAIIP 240
WFA +G ++ G KL+ ISG V P E M +ELI AG G + + AIIP
Sbjct: 236 DWFAQMGTEQSKGMKLYQISGPVKRPGVYELPMGTTFRELIYEWAG---GPLEPIQAIIP 292
Query: 241 GGSSTPLIPK 250
GGSSTP +P
Sbjct: 293 GGSSTPPLPF 302
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.017
Identities = 36/209 (17%), Positives = 58/209 (27%), Gaps = 92/209 (44%)
Query: 39 MQVAISETLKIWSIHPPWYITVWTHGVAGRAMGAKAAYIYIR---GEFYNEASNMQVAIS 95
M+ A E LK + P AG GE
Sbjct: 1739 MEKAAFEDLKSKGLIPADAT------FAG-------------HSLGE------------- 1766
Query: 96 EAYQAGLIGKNACGSGY-DFD-----VFMHRGAGAYICGEETALIESIEGKQGKPRLKPP 149
Y A L A + + VF +RG T + + G+
Sbjct: 1767 --YAA-L----ASLADVMSIESLVEVVF-YRG--------MTMQVAVPRDELGR------ 1804
Query: 150 FPADVGVFGC-PTTVS---NVETV-AVAPEICRRGGAWFASLGRPRNSGTKLFN------ 198
++ G+ P V+ + E + V + +R G W N +N
Sbjct: 1805 --SNYGMIAINPGRVAASFSQEALQYVVERVGKRTG-WLVE---IVN-----YNVENQQY 1853
Query: 199 -ISGH---VNTPCTV---EEEMSIPLKEL 220
+G ++T V + I + EL
Sbjct: 1854 VAAGDLRALDTVTNVLNFIKLQKIDIIEL 1882
Score = 33.5 bits (76), Expect = 0.066
Identities = 16/114 (14%), Positives = 28/114 (24%), Gaps = 36/114 (31%)
Query: 8 LVEGCLVAG------RAMGAKAAYI---------YIRGEFYNEASNMQVAISETLKIWSI 52
+ AG A+ + A + + RG A + +I
Sbjct: 1753 IPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAI 1812
Query: 53 HPPWYITVWTHGVAGRAMGAKAAYIYIR------GEF-----YNEASNMQVAIS 95
+P G + +A + G YN N Q +
Sbjct: 1813 NP---------GRVAASFSQEALQYVVERVGKRTGWLVEIVNYN-VENQQYVAA 1856
Score = 28.9 bits (64), Expect = 2.2
Identities = 31/173 (17%), Positives = 51/173 (29%), Gaps = 58/173 (33%)
Query: 46 TLKIWSIHPPWYITVWTHGVAGRAMGAKAAYIYIRG-----EFYNEASNMQVAISEAYQA 100
T K+ P + + G G + G A + I F+ AI+ +
Sbjct: 252 TAKLLGFTPG-ELRSYLKGATGHSQGLVTA-VAIAETDSWESFFVSVRK---AITVLFFI 306
Query: 101 GLIGKNACGSGYDFDVFMHRGAGAY--ICGEETALIESIEGKQGKPRLKPPFPADVGVFG 158
G+ R AY + L +S+E +G P
Sbjct: 307 GV-----------------RCYEAYPNTSLPPSILEDSLENNEGVP-------------- 335
Query: 159 CP-TTVSNVETVAVAPEICR------RGGAWFASL--GRPRNSGTKLFNISGH 202
P ++SN+ V + + G SL G +N +SG
Sbjct: 336 SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG-AKN-----LVVSGP 382
Score = 27.3 bits (60), Expect = 6.9
Identities = 6/24 (25%), Positives = 8/24 (33%), Gaps = 6/24 (25%)
Query: 30 GEF-----YNEASNMQVAISETLK 48
G YN N Q + L+
Sbjct: 1838 GWLVEIVNYN-VENQQYVAAGDLR 1860
Score = 26.6 bits (58), Expect = 9.9
Identities = 23/118 (19%), Positives = 37/118 (31%), Gaps = 37/118 (31%)
Query: 129 EETALIESIE----------GKQGKPR-----LK------PPFPADVGVFGCPTTVSNVE 167
+AL ++ G QG L+ D+ F T +
Sbjct: 141 SNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIR 200
Query: 168 TVAVAPEICRRG---GAWFASLGRPRNSGTKLFNISGHVNTPCTVEEEMSIPLKELIQ 222
T A ++ +G W L P N+ K + +S + S PL +IQ
Sbjct: 201 TTLDAEKVFTQGLNILEW---LENPSNTPDKDYLLS------IPI----SCPLIGVIQ 245
>2kxt_A Tellurite resistance protein; KP-TERD, Ca2+ binding protein,
calcium signaling, unknown function; NMR {Klebsiella
pneumoniae} PDB: 2kxv_A
Length = 200
Score = 28.9 bits (64), Expect = 1.3
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 167 ETVAVAPEICRRGGAW-FASLGRPRNSG 193
ET + E+ R G W F ++G+ G
Sbjct: 152 ETAMLFGELYRHNGEWKFRAVGQGYAGG 179
>3ibz_A Putative tellurium resistant like protein TERD; structural
genomics, stress protein, tellurium resistance; 1.78A
{Streptomyces coelicolor A3}
Length = 191
Score = 28.2 bits (62), Expect = 1.8
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 165 NVETVAVAPEICRRGGAW-FASLGRPRNSG 193
+ ET V E+ R G W F ++G+ SG
Sbjct: 150 STETAMVFGELYRHGAEWKFRAIGQGYASG 179
>3o0q_A Ribonucleoside-diphosphate reductase; alpha/beta barrel,
adenosylcobalamin dependent, ribonucle reductase; HET:
TTP GDP ADN; 1.80A {Thermotoga maritima} PDB: 1xjf_A*
1xjg_A* 1xje_A* 1xjk_A* 1xjm_A* 1xjn_A* 3o0n_A* 3o0o_A*
1xjj_A*
Length = 644
Score = 28.4 bits (64), Expect = 2.5
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 7/39 (17%)
Query: 93 AISEAY-QAGLIGKNACGSGYDFDVFMH--RGAGAYICG 128
I EA + LI K G G +F R G+++ G
Sbjct: 145 EIFEAVKEYALITKVGGGVGSNF----SELRPKGSFVAG 179
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 28.1 bits (62), Expect = 4.0
Identities = 11/95 (11%), Positives = 22/95 (23%), Gaps = 17/95 (17%)
Query: 23 AAYIYIRGEFYNEASNMQVAISETLKIWSIHPPWYITVWTHGVAGRAMG----AKAAY-- 76
I G +Q + + + P + + +H +A+
Sbjct: 294 VVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQ 353
Query: 77 -----------IYIRGEFYNEASNMQVAISEAYQA 100
I G +Q + QA
Sbjct: 354 AHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQA 388
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP;
transcription, beta-propeller; HET: PGE PG4 MES 2PE;
2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Length = 795
Score = 27.6 bits (62), Expect = 4.1
Identities = 6/16 (37%), Positives = 9/16 (56%), Gaps = 1/16 (6%)
Query: 46 TLKIWSIHPPWYITVW 61
L+I + P WY T+
Sbjct: 775 ALEI-IVLPIWYKTLE 789
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.432
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,064,604
Number of extensions: 244950
Number of successful extensions: 532
Number of sequences better than 10.0: 1
Number of HSP's gapped: 529
Number of HSP's successfully gapped: 14
Length of query: 251
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 160
Effective length of database: 4,160,982
Effective search space: 665757120
Effective search space used: 665757120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.3 bits)