RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11033
         (251 letters)



>d2fug12 c.142.1.1 (1:7-249) NADH-quinone oxidoreductase chain 1,
           Nqo1 {Thermus thermophilus [TaxId: 274]}
          Length = 243

 Score =  163 bits (413), Expect = 2e-50
 Identities = 70/190 (36%), Positives = 101/190 (53%), Gaps = 6/190 (3%)

Query: 10  EGCLVAGRAMGAKAAYIYIRGEFYNEASNMQVAISETLKIWSIHPPWYITVWTHGVA--- 66
              L      G      +      +   +  +  ++  +  S    + +    H +    
Sbjct: 53  RSGLRGRGGAGFPTGLKWSFMPKDDGKQHYLICNADESEPGSFKDRYILEDVPHLLIEGM 112

Query: 67  ---GRAMGAKAAYIYIRGEFYNEASNMQVAISEAYQAGLIGKNACGSGYDFDVFMHRGAG 123
              G A+ A   YIY+RGE+   A  ++ AI EA   G +GKN  G+ + FD+ +HRGAG
Sbjct: 113 ILAGYAIRATVGYIYVRGEYRRAADRLEQAIKEARARGYLGKNLFGTDFSFDLHVHRGAG 172

Query: 124 AYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPEICRRGGAWF 183
           AYICGEETAL+ S+EG +  PRLKPPFPA  G++G PTT++NVET+A    I  RG  WF
Sbjct: 173 AYICGEETALMNSLEGLRANPRLKPPFPAQSGLWGKPTTINNVETLASVVPIMERGADWF 232

Query: 184 ASLGRPRNSG 193
           A +G  ++ G
Sbjct: 233 AQMGTEQSKG 242


>d2fug13 d.15.13.1 (1:250-333) NADH-quinone oxidoreductase chain 1,
           Nqo1 {Thermus thermophilus [TaxId: 274]}
          Length = 84

 Score = 60.6 bits (147), Expect = 7e-13
 Identities = 25/55 (45%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 195 KLFNISGHVNTPCTVEEEMSIPLKELIQRHAGDVIGGWDNLLAIIPGGSSTPLIP 249
           KL+ ISG V  P   E  M    +ELI   AG      + + AIIPGGSSTP +P
Sbjct: 1   KLYQISGPVKRPGVYELPMGTTFRELIYEWAGG---PLEPIQAIIPGGSSTPPLP 52


>d1pmia_ b.82.1.3 (A:) Phosphomannose isomerase {Yeast (Candida
           albicans) [TaxId: 5476]}
          Length = 440

 Score = 29.4 bits (65), Expect = 0.45
 Identities = 7/52 (13%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 199 ISGHVNTPCTVEEEMSIPLKELIQRHAGDVIGGWDNLLAIIPGGSSTPLIPK 250
           +  H + P    +  +  L++L+     + +G  ++++         P + K
Sbjct: 50  MGTHPSVPSKAIDLNNQTLRDLVTAKPQEYLG--ESIITKFGSSKELPFLFK 99


>d2jfga2 c.59.1.1 (A:298-437)
           UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
           {Escherichia coli [TaxId: 562]}
          Length = 140

 Score = 27.6 bits (60), Expect = 0.93
 Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 1/74 (1%)

Query: 48  KIWSIHPPWYITVWTHGVAGRAMGAKAAYIYIRGEFYNEASNMQVAISEAYQAGLIGKNA 107
            +        + ++  G  G  + A    +  + E   +A  +     +     L+   A
Sbjct: 57  PLARYLNGDNVRLYCFGRDGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLLS-PA 115

Query: 108 CGSGYDFDVFMHRG 121
           C S   F  F  RG
Sbjct: 116 CASLDQFKNFEQRG 129


>d1qgja_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress
           (Arabidopsis thaliana), peroxidase N [TaxId: 3702]}
          Length = 300

 Score = 27.0 bits (59), Expect = 2.6
 Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 3/36 (8%)

Query: 159 CPTTVSNVETVAVAPEICRR---GGAWFASLGRPRN 191
           CP  VS  + + +A         G  W  +LGR   
Sbjct: 88  CPGVVSCADILTLAARDSVVLSGGPGWRVALGRKDG 123


>d1saca_ b.29.1.5 (A:) Serum amyloid P component (SAP) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 204

 Score = 26.5 bits (57), Expect = 2.6
 Identities = 11/84 (13%), Positives = 22/84 (26%)

Query: 32  FYNEASNMQVAISETLKIWSIHPPWYITVWTHGVAGRAMGAKAAYIYIRGEFYNEASNMQ 91
              +    + ++       +           H        +  A  +I G    +    Q
Sbjct: 62  LVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQ 121

Query: 92  VAISEAYQAGLIGKNACGSGYDFD 115
               EA    ++G+     G  FD
Sbjct: 122 GYFVEAQPKIVLGQEQDSYGGKFD 145


>d2i00a2 d.108.1.10 (A:10-300) Putative acetyltransferase EF2353
           {Enterococcus faecalis [TaxId: 1351]}
          Length = 291

 Score = 26.1 bits (56), Expect = 5.1
 Identities = 8/33 (24%), Positives = 12/33 (36%)

Query: 150 FPADVGVFGCPTTVSNVETVAVAPEICRRGGAW 182
           +P +V + G    +  V  V   PE    G   
Sbjct: 69  YPCEVNIHGALYKMGGVTGVGTYPEYANHGLMK 101


>d1n8fa_ c.1.10.4 (A:) 3-deoxy-D-arabino-heptulosonate-7-phosphate
           synthase (DAHP synthase, AroG) {Escherichia coli,
           phenylalanine-regulated isozyme [TaxId: 562]}
          Length = 343

 Score = 25.2 bits (55), Expect = 9.2
 Identities = 26/129 (20%), Positives = 40/129 (31%), Gaps = 21/129 (16%)

Query: 38  NMQVAISETLKIWSIHPPWYITVWTHGVAGRAMGAKAAYIYIRGEFYN--EASNMQVAIS 95
            ++VAI       + H    +T W H       G    +I +RG       A ++     
Sbjct: 185 TIKVAIDAINAAGAPHCFLSVTKWGHSAIVNTSGNGDCHIILRGGKEPNYSAKHVAEVKE 244

Query: 96  EAYQAGL-------IGKNACGSGYD------FDVFMHRGAG-AYICGEETALIES--IEG 139
              +AGL                +        DV      G   I G    ++ES  +EG
Sbjct: 245 GLNKAGLPAQVMIDFSHANSSKQFKKQMDVCADVCQQIAGGEKAIIG---VMVESHLVEG 301

Query: 140 KQGKPRLKP 148
            Q     +P
Sbjct: 302 NQSLESGEP 310


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.137    0.432 

Gapped
Lambda     K      H
   0.267   0.0448    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 986,791
Number of extensions: 45467
Number of successful extensions: 119
Number of sequences better than 10.0: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 13
Length of query: 251
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 168
Effective length of database: 1,268,006
Effective search space: 213025008
Effective search space used: 213025008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.5 bits)